BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004805
(729 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 322 bits (826), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 187/461 (40%), Positives = 257/461 (55%), Gaps = 39/461 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--------------WLCRCD 177
E L ++ + + + +L +G TV+E WL
Sbjct: 127 --------ERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQ 178
Query: 178 AD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 SDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+
Sbjct: 239 HGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
+ RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N
Sbjct: 299 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDN 358
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 413
R+A L + D R + C L RY K+ +D F A +R + G
Sbjct: 359 DRVATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSG 409
Query: 414 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
++T+ S +T L + A+K C+ + F D
Sbjct: 410 IQTEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 178/373 (47%), Gaps = 34/373 (9%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R++AH+D D FY QVE + +P AV Q W+G LIAV Y AR + R
Sbjct: 23 NSPLRVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQ---WQG--LIAVNYAARAANISRH 77
Query: 68 MRGDEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK 111
EAK+ CP++ V + K L YR+ ++++I+ +
Sbjct: 78 ETVTEAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKH 137
Query: 112 G-RCERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEEAL--KSHILGLESKDGNDSKA 167
++ASIDE +++LT D +L E P + D ++ +L ++ G
Sbjct: 138 APVVKKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFG---MV 194
Query: 168 TVKEWLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
+E + R D+ D L IV E+R + + ++TCSAG++ N ML+KL S
Sbjct: 195 IEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSS 254
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
NKP +QT + ++++ L SL I ++ LGGK G + N LG ++ D+ S D L +
Sbjct: 255 RNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLID 314
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G G +WN+ GI E+ ++ KS S K+F + +K+ +W +L
Sbjct: 315 KLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDL 373
Query: 344 SERLCSDLEQNKR 356
R +LE +R
Sbjct: 374 RSRFL-ELEGMRR 385
>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1
Length = 717
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 25 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 80 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 133
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 134 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 175
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 176 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 235
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 236 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 294
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 295 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVIR 347
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 348 RY----SDKHCNRESRQCPI 363
>sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3
Length = 740
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 175/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 48 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 101
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 102 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 155
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ +S + D H
Sbjct: 156 DLTEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR-- 197
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 198 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 257
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 258 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 316
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 317 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 369
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 370 IIRRYSSEKHYGRE---SRQCPI 389
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 178/424 (41%), Gaps = 76/424 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I H+DLDCF+V V + + +L P AV + KG I+ Y AR YGVK M
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD--- 484
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
L +V+ E L S I
Sbjct: 485 ----------LSDVETEVLASTI------------------------------------- 497
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ +
Sbjct: 498 ----RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLP 553
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 312 KSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 613 KSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKK 666
Query: 368 FKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 425
K + K C R T D + Q ++ GSF + + G +
Sbjct: 667 RKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQ 726
Query: 426 ITAL 429
++ L
Sbjct: 727 VSKL 730
>sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB
PE=3 SV=1
Length = 351
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3
SV=1
Length = 351
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3
SV=1
Length = 351
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q47155|DPO4_ECOLI DNA polymerase IV OS=Escherichia coli (strain K12) GN=dinB PE=1
SV=1
Length = 351
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B1J100|DPO4_ECOLC DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=dinB PE=3 SV=1
Length = 351
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q83M86|DPO4_SHIFL DNA polymerase IV OS=Shigella flexneri GN=dinB PE=3 SV=1
Length = 351
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 151/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZHZ2|DPO4_ECO24 DNA polymerase IV OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=dinB PE=3 SV=1
Length = 351
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|P59477|DPO4_ECOL6 DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q32J17|DPO4_SHIDS DNA polymerase IV OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=dinB PE=3 SV=1
Length = 351
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZWJ6|DPO4_ECOHS DNA polymerase IV OS=Escherichia coli O9:H4 (strain HS) GN=dinB
PE=3 SV=1
Length = 351
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B2U3S3|DPO4_SHIB3 DNA polymerase IV OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=dinB PE=3 SV=1
Length = 354
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 149/342 (43%), Gaps = 73/342 (21%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 7 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 66 LKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 117
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
C A LI
Sbjct: 118 -----------------------------------------CHGSA----------TLIA 126
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 127 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 186
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L K
Sbjct: 187 V-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRK 244
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
S G ++ + HW CE + ERL +LE+
Sbjct: 245 SVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV OS=Escherichia coli O157:H7 GN=dinB PE=3 SV=1
Length = 351
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 158/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GME--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 157/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V +I R E S+DE YLD+++
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GIE--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|A4TPK8|DPO4_YERPP DNA polymerase IV OS=Yersinia pestis (strain Pestoides F) GN=dinB
PE=3 SV=1
Length = 352
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>sp|Q1CLD4|DPO4_YERPN DNA polymerase IV OS=Yersinia pestis bv. Antiqua (strain Nepal516)
GN=dinB PE=3 SV=1
Length = 352
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>sp|Q8ZBZ9|DPO4_YERPE DNA polymerase IV OS=Yersinia pestis GN=dinB PE=3 SV=1
Length = 352
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>sp|Q1C4D9|DPO4_YERPA DNA polymerase IV OS=Yersinia pestis bv. Antiqua (strain Antiqua)
GN=dinB PE=3 SV=1
Length = 352
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>sp|Q8EQ56|DPO4_OCEIH DNA polymerase IV OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=dinB PE=3 SV=1
Length = 419
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 150/354 (42%), Gaps = 63/354 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RII H+D++CFY VE P L+G P A+ E + G ++ YEAR GVK +M
Sbjct: 10 RIIFHIDMNCFYASVEMAHNPSLKGKPLAIAGNPEERKGIIVTSSYEARGKGVKTTMPIW 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+AK++CP + L+ + + YR A E+ +LA + SIDE Y+D+TD
Sbjct: 70 QAKKLCPDLILM-------RPNFDRYRAASREIFKMLAEITPYVQPVSIDEGYMDITDTI 122
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
A +D L+
Sbjct: 123 YA------------------------------------------------KDPLVTAN-- 132
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+L+ ++L + CS GIA NK LAK+AS M KP T + V+ LL + +++M
Sbjct: 133 ---QLQQRILSGLDIPCSIGIAPNKFLAKMASDMKKPLGITVLRKREVEKLLWPMSVEEM 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K L N + + T+GDL K + +L++ G N G L N A GI V +
Sbjct: 190 YGIGEKTAQKL-NSIEIKTIGDLAKKNVYELKQLLGVN-GERLQNRANGIDNRLVDPEAV 247
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
G S P V + +++L + + R+ K + T+ H
Sbjct: 248 HDFKSIGSSQTLPHDSTDVTELMQLIHELVDNVERRVKRKEAAGKTVQITIRYH 301
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 156/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKY 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>sp|Q5PF76|DPO4_SALPA DNA polymerase IV OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=dinB PE=3 SV=1
Length = 351
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHIDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGAISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>sp|Q5LYC2|DPO4_STRT1 DNA polymerase IV OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=dinB PE=3 SV=1
Length = 367
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ QVE R P L+ P + GG G+++ YEAR YGV +M
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPVIIGNDPRKTGGRGVVSTCNYEARKYGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLT 127
EA E CP + + S YR G ++ I E SIDE YLD+T
Sbjct: 71 SSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LPI
Sbjct: 132 AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>sp|A9MNS1|DPO4_SALAR DNA polymerase IV OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=dinB PE=3 SV=1
Length = 351
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 149/343 (43%), Gaps = 73/343 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E +G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRECRGV-ISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A V I +R E S+DE +LD+TD
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
TP H G L
Sbjct: 112 ------TP--------------HCYG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 122 IAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLESMGLITCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
KS G ++ + W + CE + ERL +LE+
Sbjct: 240 RKSVGVERTL--------AEDIHEWSD--CEAIIERLYPELER 272
>sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1
Length = 359
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + V VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 58 AVRAERLCP--DAVFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T E+ +
Sbjct: 111 AKTGMQLAT------EIAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L LP+
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKLAA-LGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ + L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDA-------LDPHIQRLAEKTWHATRRTERIGRTVVL 284
>sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
8004) GN=dinB PE=3 SV=1
Length = 359
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + V VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 58 AVRAERLCP--DAVFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T E+ +
Sbjct: 111 AKTGMQLAT------EIAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L LP+
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKLAA-LGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ + L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDA-------LDPHIQRLAEKTWHATRRTERIGRTVVL 284
>sp|Q66DZ7|DPO4_YERPS DNA polymerase IV OS=Yersinia pseudotuberculosis serotype I (strain
IP32953) GN=dinB PE=3 SV=1
Length = 352
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T G++ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGEIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>sp|A7FLI9|DPO4_YERP3 DNA polymerase IV OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=dinB PE=3 SV=1
Length = 352
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T G++ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGEIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>sp|Q5XA48|DPO4_STRP6 DNA polymerase IV OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=dinB PE=3 SV=1
Length = 364
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 NNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 NNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|Q6GFG2|DPO4_STAAR DNA polymerase IV OS=Staphylococcus aureus (strain MRSA252) GN=dinB
PE=3 SV=1
Length = 356
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q2YU32|DPO4_STAAB DNA polymerase IV OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=dinB PE=3 SV=1
Length = 328
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,327,810
Number of Sequences: 539616
Number of extensions: 11649567
Number of successful extensions: 26837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 25522
Number of HSP's gapped (non-prelim): 693
length of query: 729
length of database: 191,569,459
effective HSP length: 125
effective length of query: 604
effective length of database: 124,117,459
effective search space: 74966945236
effective search space used: 74966945236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)