Query 004806
Match_columns 729
No_of_seqs 527 out of 2842
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 5.8E-26 1.3E-30 282.0 32.7 279 442-720 11-312 (2102)
2 KOG0166 Karyopherin (importin) 99.9 2.7E-25 5.8E-30 245.5 24.3 279 443-721 108-394 (514)
3 PLN03200 cellulose synthase-in 99.9 1.4E-24 3E-29 269.8 32.9 279 443-722 445-766 (2102)
4 KOG4224 Armadillo repeat prote 99.9 2.8E-24 6E-29 223.2 19.5 275 445-720 127-405 (550)
5 KOG4224 Armadillo repeat prote 99.9 3.3E-24 7.1E-29 222.6 19.8 277 443-721 166-447 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 3E-23 6.6E-28 213.9 15.5 278 443-722 113-400 (526)
7 KOG0166 Karyopherin (importin) 99.9 5.9E-22 1.3E-26 219.1 26.0 280 443-722 151-438 (514)
8 PF04564 U-box: U-box domain; 99.9 7.3E-23 1.6E-27 172.8 5.5 73 137-209 1-73 (73)
9 COG5064 SRP1 Karyopherin (impo 99.9 5.5E-21 1.2E-25 197.3 18.4 278 443-720 156-443 (526)
10 KOG1048 Neural adherens juncti 99.8 5.1E-18 1.1E-22 193.1 20.2 281 444-725 233-600 (717)
11 PF05804 KAP: Kinesin-associat 99.8 1.5E-16 3.2E-21 185.1 29.0 276 443-722 289-651 (708)
12 PF05804 KAP: Kinesin-associat 99.7 3.7E-16 8E-21 181.8 27.5 253 460-720 265-520 (708)
13 smart00504 Ubox Modified RING 99.7 2.2E-17 4.7E-22 135.3 5.6 63 140-203 1-63 (63)
14 KOG2122 Beta-catenin-binding p 99.7 4.2E-16 9.1E-21 182.9 17.7 262 460-722 313-603 (2195)
15 KOG4199 Uncharacterized conser 99.7 2.6E-14 5.6E-19 148.4 25.4 275 446-721 147-445 (461)
16 PF04826 Arm_2: Armadillo-like 99.5 1E-12 2.2E-17 137.0 23.1 191 443-638 11-206 (254)
17 KOG1048 Neural adherens juncti 99.5 3E-13 6.4E-18 154.6 20.1 276 444-721 275-685 (717)
18 KOG4642 Chaperone-dependent E3 99.5 2.1E-13 4.6E-18 136.3 15.0 172 30-211 83-282 (284)
19 KOG4199 Uncharacterized conser 99.5 1.2E-11 2.6E-16 128.7 26.4 267 453-723 116-406 (461)
20 KOG2122 Beta-catenin-binding p 99.5 2.6E-13 5.6E-18 160.0 15.0 224 458-681 365-604 (2195)
21 PF04826 Arm_2: Armadillo-like 99.4 9.6E-12 2.1E-16 129.7 20.7 194 483-680 9-207 (254)
22 PF10508 Proteasom_PSMB: Prote 99.4 8.7E-11 1.9E-15 134.8 28.2 277 442-719 75-365 (503)
23 COG5113 UFD2 Ubiquitin fusion 99.3 7.5E-12 1.6E-16 138.1 11.6 129 48-207 789-921 (929)
24 KOG2042 Ubiquitin fusion degra 99.3 1.4E-11 3E-16 144.5 10.9 121 59-207 813-937 (943)
25 PF10508 Proteasom_PSMB: Prote 99.2 6.8E-09 1.5E-13 119.3 25.4 272 449-724 43-323 (503)
26 cd00020 ARM Armadillo/beta-cat 99.1 6.8E-10 1.5E-14 101.1 13.2 116 482-597 3-120 (120)
27 PF15227 zf-C3HC4_4: zinc fing 99.1 3.2E-11 6.9E-16 90.4 3.2 39 143-181 1-42 (42)
28 KOG1222 Kinesin associated pro 99.1 9E-09 1.9E-13 111.6 22.9 275 443-721 303-664 (791)
29 PLN03208 E3 ubiquitin-protein 99.1 4.2E-11 9.1E-16 117.6 3.8 61 134-194 12-87 (193)
30 KOG4500 Rho/Rac GTPase guanine 99.1 7.9E-09 1.7E-13 111.0 20.9 278 443-721 86-432 (604)
31 cd00020 ARM Armadillo/beta-cat 99.1 3E-09 6.4E-14 96.9 15.1 116 604-719 2-119 (120)
32 cd00256 VATPase_H VATPase_H, r 99.1 2.2E-08 4.7E-13 111.2 24.5 273 446-718 103-423 (429)
33 KOG0168 Putative ubiquitin fus 99.1 3.2E-08 6.9E-13 113.5 25.9 256 443-702 166-437 (1051)
34 TIGR00599 rad18 DNA repair pro 99.1 1.5E-10 3.3E-15 126.5 6.4 68 137-205 23-90 (397)
35 PRK09687 putative lyase; Provi 99.0 2.3E-08 5.1E-13 106.3 21.6 223 444-717 54-279 (280)
36 PRK09687 putative lyase; Provi 99.0 2.6E-08 5.5E-13 106.0 21.1 224 444-718 23-248 (280)
37 KOG1222 Kinesin associated pro 98.9 1E-07 2.2E-12 103.5 21.5 249 462-719 281-533 (791)
38 PF03224 V-ATPase_H_N: V-ATPas 98.9 7.1E-08 1.5E-12 104.4 18.1 230 486-715 55-309 (312)
39 PF03224 V-ATPase_H_N: V-ATPas 98.9 8.9E-08 1.9E-12 103.6 18.8 219 448-667 62-303 (312)
40 KOG4500 Rho/Rac GTPase guanine 98.8 1.5E-07 3.2E-12 101.4 18.8 275 443-718 222-517 (604)
41 PF13923 zf-C3HC4_2: Zinc fing 98.8 5.3E-09 1.1E-13 77.2 3.2 38 143-181 1-39 (39)
42 PRK13800 putative oxidoreducta 98.7 1.4E-06 3E-11 107.1 25.5 225 443-718 620-865 (897)
43 PRK13800 putative oxidoreducta 98.7 1.9E-06 4.1E-11 105.9 25.2 228 443-717 651-896 (897)
44 KOG0946 ER-Golgi vesicle-tethe 98.7 3.2E-06 7E-11 96.9 24.7 267 443-713 21-339 (970)
45 PF11789 zf-Nse: Zinc-finger o 98.7 7.2E-09 1.6E-13 82.9 2.3 44 139-182 10-55 (57)
46 KOG4646 Uncharacterized conser 98.6 4.9E-07 1.1E-11 83.7 11.5 128 443-571 15-144 (173)
47 KOG0287 Postreplication repair 98.6 2E-08 4.4E-13 104.2 2.8 64 139-203 22-85 (442)
48 PF13445 zf-RING_UBOX: RING-ty 98.6 2.9E-08 6.4E-13 74.5 2.4 36 143-179 1-43 (43)
49 cd00256 VATPase_H VATPase_H, r 98.6 6.6E-06 1.4E-10 91.7 21.6 233 445-679 144-426 (429)
50 PF00097 zf-C3HC4: Zinc finger 98.5 5.9E-08 1.3E-12 72.3 3.5 39 143-181 1-41 (41)
51 KOG2759 Vacuolar H+-ATPase V1 98.5 8.6E-06 1.9E-10 88.3 21.0 271 447-718 117-436 (442)
52 KOG0168 Putative ubiquitin fus 98.5 2.8E-06 6.1E-11 98.0 17.5 214 442-659 209-436 (1051)
53 KOG2177 Predicted E3 ubiquitin 98.5 8.3E-08 1.8E-12 101.7 4.6 71 137-210 10-80 (386)
54 PHA02929 N1R/p28-like protein; 98.5 2E-07 4.3E-12 95.8 7.1 49 137-186 171-227 (238)
55 KOG2160 Armadillo/beta-catenin 98.5 7.1E-06 1.5E-10 87.8 18.8 181 539-719 95-282 (342)
56 KOG2160 Armadillo/beta-catenin 98.5 1.5E-05 3.3E-10 85.3 21.2 182 455-637 94-282 (342)
57 PF14835 zf-RING_6: zf-RING of 98.5 3.7E-08 8.1E-13 79.1 1.0 58 140-200 7-65 (65)
58 KOG0823 Predicted E3 ubiquitin 98.5 7E-08 1.5E-12 96.6 3.1 56 139-194 46-103 (230)
59 PF13920 zf-C3HC4_3: Zinc fing 98.5 1.1E-07 2.4E-12 74.2 3.5 47 139-186 1-48 (50)
60 PF01602 Adaptin_N: Adaptin N 98.5 1.3E-05 2.7E-10 92.6 22.1 253 443-720 78-333 (526)
61 KOG2973 Uncharacterized conser 98.4 5.2E-05 1.1E-09 79.4 22.5 270 445-720 4-315 (353)
62 KOG0320 Predicted E3 ubiquitin 98.4 1.5E-07 3.3E-12 90.4 2.7 52 140-192 131-184 (187)
63 COG5432 RAD18 RING-finger-cont 98.3 3.1E-07 6.8E-12 93.7 3.2 65 140-205 25-89 (391)
64 PF01602 Adaptin_N: Adaptin N 98.3 3.1E-05 6.7E-10 89.4 19.9 219 443-678 113-333 (526)
65 KOG2023 Nuclear transport rece 98.3 1.2E-05 2.7E-10 90.8 14.3 275 438-722 122-465 (885)
66 KOG1293 Proteins containing ar 98.2 7.4E-05 1.6E-09 84.9 20.2 170 520-689 370-544 (678)
67 cd00162 RING RING-finger (Real 98.2 1E-06 2.2E-11 66.0 3.8 44 142-185 1-45 (45)
68 PF13639 zf-RING_2: Ring finge 98.2 5E-07 1.1E-11 68.5 2.1 40 142-182 2-44 (44)
69 KOG1293 Proteins containing ar 98.2 7.5E-05 1.6E-09 84.9 19.6 249 455-703 388-655 (678)
70 KOG0317 Predicted E3 ubiquitin 98.2 1.5E-06 3.2E-11 89.7 4.0 55 136-191 234-289 (293)
71 KOG4646 Uncharacterized conser 98.1 1.5E-05 3.2E-10 74.1 9.8 155 564-718 12-168 (173)
72 smart00184 RING Ring finger. E 98.1 2.2E-06 4.7E-11 61.9 3.6 39 143-181 1-39 (39)
73 KOG3678 SARM protein (with ste 98.1 0.00014 3E-09 79.4 17.8 261 443-721 179-453 (832)
74 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00015 3.3E-09 78.8 18.0 231 447-679 159-439 (442)
75 TIGR00570 cdk7 CDK-activating 98.1 4.3E-06 9.4E-11 88.4 6.0 66 139-204 2-76 (309)
76 PHA02926 zinc finger-like prot 98.0 3.4E-06 7.4E-11 84.1 3.7 55 137-193 167-235 (242)
77 KOG2171 Karyopherin (importin) 98.0 0.0016 3.4E-08 78.7 25.8 274 443-720 158-504 (1075)
78 COG5222 Uncharacterized conser 97.9 8.8E-06 1.9E-10 83.6 4.9 67 141-207 275-343 (427)
79 KOG0311 Predicted E3 ubiquitin 97.9 1.9E-06 4.1E-11 90.9 -0.1 67 137-203 40-108 (381)
80 PTZ00429 beta-adaptin; Provisi 97.9 0.0039 8.3E-08 74.8 27.6 148 443-598 139-286 (746)
81 KOG2171 Karyopherin (importin) 97.9 0.00034 7.3E-09 84.2 18.4 234 444-679 348-595 (1075)
82 TIGR02270 conserved hypothetic 97.9 0.001 2.2E-08 74.6 21.0 220 443-720 53-296 (410)
83 PTZ00429 beta-adaptin; Provisi 97.9 0.0015 3.2E-08 78.2 23.3 257 443-719 67-325 (746)
84 PF14634 zf-RING_5: zinc-RING 97.9 1.2E-05 2.5E-10 61.0 3.1 41 142-183 1-44 (44)
85 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0045 9.8E-08 71.9 24.9 247 443-689 60-357 (970)
86 PF05536 Neurochondrin: Neuroc 97.8 0.00089 1.9E-08 77.8 19.6 231 487-718 6-259 (543)
87 KOG2164 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 89.5 3.3 72 137-208 183-262 (513)
88 PF05536 Neurochondrin: Neuroc 97.8 0.00065 1.4E-08 78.9 17.7 192 528-720 6-213 (543)
89 KOG2973 Uncharacterized conser 97.8 0.00045 9.8E-09 72.5 14.4 233 489-726 6-279 (353)
90 COG5574 PEX10 RING-finger-cont 97.7 1.4E-05 3E-10 81.7 2.4 51 139-189 214-265 (271)
91 KOG0978 E3 ubiquitin ligase in 97.7 3.1E-05 6.7E-10 89.7 4.9 53 140-192 643-695 (698)
92 PF00514 Arm: Armadillo/beta-c 97.7 6.8E-05 1.5E-09 55.8 5.1 40 475-514 1-40 (41)
93 KOG0212 Uncharacterized conser 97.7 0.00084 1.8E-08 75.3 14.8 232 442-679 206-445 (675)
94 KOG4413 26S proteasome regulat 97.7 0.004 8.6E-08 65.9 18.9 248 443-691 81-345 (524)
95 PF14664 RICTOR_N: Rapamycin-i 97.6 0.011 2.3E-07 65.6 23.4 272 443-718 24-362 (371)
96 COG5369 Uncharacterized conser 97.6 0.00028 6.1E-09 78.5 10.7 181 463-643 408-600 (743)
97 KOG2734 Uncharacterized conser 97.6 0.013 2.7E-07 64.5 23.0 236 464-701 104-371 (536)
98 KOG0289 mRNA splicing factor [ 97.6 3.1E-05 6.8E-10 83.7 2.5 51 141-192 1-52 (506)
99 KOG4159 Predicted E3 ubiquitin 97.6 5E-05 1.1E-09 83.7 4.0 72 134-206 78-154 (398)
100 KOG3678 SARM protein (with ste 97.6 0.00085 1.8E-08 73.5 13.2 181 478-660 172-359 (832)
101 PF12678 zf-rbx1: RING-H2 zinc 97.6 7.4E-05 1.6E-09 63.1 3.9 44 137-182 17-73 (73)
102 COG5369 Uncharacterized conser 97.5 0.00075 1.6E-08 75.2 12.5 182 519-700 423-617 (743)
103 COG1413 FOG: HEAT repeat [Ener 97.5 0.0087 1.9E-07 65.2 21.1 184 444-676 43-240 (335)
104 PF14664 RICTOR_N: Rapamycin-i 97.5 0.0097 2.1E-07 66.0 21.0 248 468-718 7-267 (371)
105 KOG0297 TNF receptor-associate 97.5 6E-05 1.3E-09 83.9 3.5 66 137-203 18-85 (391)
106 KOG1517 Guanine nucleotide bin 97.5 0.0034 7.3E-08 74.8 17.7 202 483-684 509-738 (1387)
107 PF10165 Ric8: Guanine nucleot 97.5 0.015 3.3E-07 66.2 22.7 239 443-681 21-340 (446)
108 KOG2023 Nuclear transport rece 97.5 0.002 4.3E-08 73.6 14.9 268 442-721 172-506 (885)
109 KOG2660 Locus-specific chromos 97.5 6.6E-05 1.4E-09 79.1 2.8 66 137-203 12-82 (331)
110 COG1413 FOG: HEAT repeat [Ener 97.4 0.006 1.3E-07 66.5 17.8 189 486-718 43-240 (335)
111 PF00514 Arm: Armadillo/beta-c 97.4 0.00029 6.3E-09 52.3 4.8 40 639-678 2-41 (41)
112 KOG2734 Uncharacterized conser 97.4 0.049 1.1E-06 60.0 23.5 238 443-680 124-402 (536)
113 PF10165 Ric8: Guanine nucleot 97.4 0.0062 1.3E-07 69.3 17.6 257 465-722 2-339 (446)
114 TIGR02270 conserved hypothetic 97.3 0.026 5.6E-07 63.4 21.2 151 486-677 54-206 (410)
115 KOG1789 Endocytosis protein RM 97.3 0.024 5.2E-07 67.6 20.6 134 462-596 1743-1882(2235)
116 PF12348 CLASP_N: CLASP N term 97.2 0.0016 3.4E-08 67.0 9.7 179 454-637 17-206 (228)
117 PF13646 HEAT_2: HEAT repeats; 97.2 0.0014 3E-08 56.6 7.8 86 488-593 1-88 (88)
118 COG5240 SEC21 Vesicle coat com 97.2 0.055 1.2E-06 61.2 21.8 252 443-722 263-557 (898)
119 COG5231 VMA13 Vacuolar H+-ATPa 97.1 0.012 2.6E-07 62.3 14.8 225 494-718 157-426 (432)
120 KOG4413 26S proteasome regulat 97.1 0.1 2.2E-06 55.6 21.4 278 443-721 127-440 (524)
121 PF13646 HEAT_2: HEAT repeats; 97.1 0.0036 7.8E-08 53.9 9.1 85 529-633 1-88 (88)
122 KOG1242 Protein containing ada 97.0 0.064 1.4E-06 61.5 20.1 268 443-720 133-445 (569)
123 KOG0212 Uncharacterized conser 97.0 0.035 7.6E-07 62.7 17.6 270 442-718 165-442 (675)
124 KOG0824 Predicted E3 ubiquitin 97.0 0.00036 7.9E-09 72.6 2.0 47 142-188 9-55 (324)
125 PF12348 CLASP_N: CLASP N term 96.9 0.0026 5.7E-08 65.3 8.3 182 537-722 17-208 (228)
126 KOG2259 Uncharacterized conser 96.8 0.0069 1.5E-07 69.3 11.0 212 488-715 200-470 (823)
127 KOG1242 Protein containing ada 96.8 0.067 1.5E-06 61.3 18.3 223 443-679 95-325 (569)
128 KOG1241 Karyopherin (importin) 96.8 0.08 1.7E-06 61.9 18.9 270 443-721 128-436 (859)
129 smart00185 ARM Armadillo/beta- 96.8 0.0033 7.2E-08 45.9 5.4 38 477-514 3-40 (41)
130 KOG1059 Vesicle coat complex A 96.7 0.089 1.9E-06 61.1 18.8 253 442-718 179-441 (877)
131 KOG0802 E3 ubiquitin ligase [P 96.7 0.00068 1.5E-08 79.0 1.9 47 138-185 289-340 (543)
132 KOG1813 Predicted E3 ubiquitin 96.6 0.001 2.2E-08 69.2 2.5 62 141-204 242-303 (313)
133 KOG1002 Nucleotide excision re 96.6 0.00094 2E-08 73.8 2.0 51 139-189 535-589 (791)
134 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0017 3.6E-08 68.6 3.5 65 137-203 110-182 (260)
135 PF09759 Atx10homo_assoc: Spin 96.6 0.0092 2E-07 53.6 7.7 66 625-690 3-71 (102)
136 KOG1061 Vesicle coat complex A 96.5 0.027 5.8E-07 65.9 13.1 72 442-516 119-190 (734)
137 smart00185 ARM Armadillo/beta- 96.4 0.0081 1.8E-07 43.8 5.2 40 517-556 2-41 (41)
138 COG5231 VMA13 Vacuolar H+-ATPa 96.3 0.14 3E-06 54.5 15.8 220 457-678 162-428 (432)
139 COG5181 HSH155 U2 snRNP splice 96.3 0.14 3.1E-06 58.5 16.4 153 443-597 603-759 (975)
140 KOG1517 Guanine nucleotide bin 96.3 0.051 1.1E-06 65.2 13.5 155 567-721 511-672 (1387)
141 KOG4628 Predicted E3 ubiquitin 96.2 0.0029 6.2E-08 68.4 3.0 45 141-185 230-277 (348)
142 KOG1062 Vesicle coat complex A 96.2 0.13 2.8E-06 60.6 16.3 268 443-720 178-544 (866)
143 KOG2259 Uncharacterized conser 96.2 0.056 1.2E-06 62.1 13.2 216 444-674 198-471 (823)
144 KOG3039 Uncharacterized conser 96.2 0.0033 7.2E-08 63.6 2.9 53 139-192 220-276 (303)
145 PF12861 zf-Apc11: Anaphase-pr 96.2 0.0046 9.9E-08 53.3 3.2 47 140-186 32-82 (85)
146 PF11841 DUF3361: Domain of un 96.2 0.067 1.4E-06 51.9 11.6 120 563-682 6-135 (160)
147 PF04063 DUF383: Domain of unk 96.1 0.034 7.4E-07 55.9 9.8 123 579-701 6-157 (192)
148 COG5152 Uncharacterized conser 96.1 0.0024 5.2E-08 62.5 1.2 46 141-187 197-242 (259)
149 KOG1824 TATA-binding protein-i 96.0 0.21 4.5E-06 59.7 16.8 233 442-682 45-290 (1233)
150 KOG1789 Endocytosis protein RM 96.0 0.092 2E-06 62.9 13.8 138 543-680 1741-1885(2235)
151 KOG1248 Uncharacterized conser 96.0 0.84 1.8E-05 56.1 22.2 219 496-720 664-898 (1176)
152 KOG0213 Splicing factor 3b, su 96.0 0.36 7.8E-06 56.4 18.1 153 443-597 798-954 (1172)
153 KOG3039 Uncharacterized conser 96.0 0.0043 9.4E-08 62.8 2.7 37 137-173 40-76 (303)
154 KOG4151 Myosin assembly protei 95.9 0.17 3.8E-06 59.6 15.8 241 475-720 493-741 (748)
155 KOG2979 Protein involved in DN 95.9 0.0072 1.6E-07 62.0 3.9 63 140-202 176-244 (262)
156 COG5243 HRD1 HRD ubiquitin lig 95.8 0.0059 1.3E-07 65.2 3.0 48 138-186 285-345 (491)
157 KOG1059 Vesicle coat complex A 95.8 0.4 8.6E-06 56.0 17.5 241 452-719 117-364 (877)
158 PF05004 IFRD: Interferon-rela 95.8 0.41 8.8E-06 51.9 17.1 178 499-679 56-258 (309)
159 KOG4367 Predicted Zn-finger pr 95.8 0.0037 8.1E-08 67.6 1.4 34 138-171 2-35 (699)
160 KOG3036 Protein involved in ce 95.7 0.54 1.2E-05 48.5 16.1 179 500-678 93-291 (293)
161 KOG1824 TATA-binding protein-i 95.7 0.32 6.9E-06 58.2 16.3 265 448-721 9-287 (1233)
162 COG5096 Vesicle coat complex, 95.6 0.17 3.7E-06 60.2 14.4 143 442-597 53-195 (757)
163 PF13513 HEAT_EZ: HEAT-like re 95.6 0.02 4.4E-07 45.1 4.7 55 541-595 1-55 (55)
164 KOG3036 Protein involved in ce 95.6 0.58 1.3E-05 48.3 15.8 145 462-607 97-257 (293)
165 COG5096 Vesicle coat complex, 95.5 0.26 5.6E-06 58.8 15.1 167 453-638 28-196 (757)
166 PF09759 Atx10homo_assoc: Spin 95.5 0.052 1.1E-06 48.9 7.3 66 461-526 3-71 (102)
167 PF11698 V-ATPase_H_C: V-ATPas 95.5 0.046 9.9E-07 50.5 7.0 72 443-514 42-114 (119)
168 KOG2879 Predicted E3 ubiquitin 95.5 0.01 2.2E-07 61.3 3.0 49 138-186 237-287 (298)
169 PF13513 HEAT_EZ: HEAT-like re 95.3 0.029 6.3E-07 44.2 4.6 55 500-554 1-55 (55)
170 KOG1241 Karyopherin (importin) 95.3 0.97 2.1E-05 53.2 18.3 191 440-637 315-530 (859)
171 COG5215 KAP95 Karyopherin (imp 95.3 1.1 2.4E-05 51.2 18.1 271 442-721 131-438 (858)
172 KOG0826 Predicted E3 ubiquitin 95.3 0.0081 1.8E-07 63.4 1.6 53 137-190 297-350 (357)
173 PF04078 Rcd1: Cell differenti 95.2 0.64 1.4E-05 48.7 15.3 191 457-647 8-228 (262)
174 COG5540 RING-finger-containing 95.2 0.015 3.2E-07 60.8 3.2 47 141-187 324-373 (374)
175 PF04063 DUF383: Domain of unk 95.2 0.086 1.9E-06 53.1 8.5 111 499-609 8-144 (192)
176 KOG1078 Vesicle coat complex C 95.1 1.9 4.2E-05 51.0 20.2 259 444-720 245-532 (865)
177 PF11841 DUF3361: Domain of un 95.1 0.22 4.9E-06 48.3 10.7 118 603-720 5-131 (160)
178 KOG1062 Vesicle coat complex A 95.1 1.8 3.8E-05 51.5 19.7 99 445-555 108-207 (866)
179 PF13764 E3_UbLigase_R4: E3 ub 94.9 1.9 4.1E-05 52.4 20.0 237 482-721 113-407 (802)
180 KOG1060 Vesicle coat complex A 94.5 2.5 5.5E-05 50.1 18.9 207 447-678 38-246 (968)
181 KOG1077 Vesicle coat complex A 94.4 2 4.3E-05 50.3 17.8 106 442-556 109-216 (938)
182 PF04078 Rcd1: Cell differenti 94.4 0.5 1.1E-05 49.4 11.9 171 462-635 68-260 (262)
183 PF05004 IFRD: Interferon-rela 94.2 1.6 3.4E-05 47.4 16.0 183 536-720 52-257 (309)
184 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.28 6E-06 43.9 8.4 68 649-719 27-96 (97)
185 KOG1061 Vesicle coat complex A 94.1 0.28 6.1E-06 57.7 10.5 243 442-704 47-293 (734)
186 KOG0213 Splicing factor 3b, su 94.1 0.97 2.1E-05 53.0 14.4 224 491-720 804-1065(1172)
187 KOG4692 Predicted E3 ubiquitin 94.0 0.068 1.5E-06 56.9 4.9 51 136-187 416-468 (489)
188 KOG1785 Tyrosine kinase negati 94.0 0.023 5E-07 61.2 1.4 47 142-188 371-418 (563)
189 PF07814 WAPL: Wings apart-lik 94.0 1.6 3.4E-05 48.5 15.9 242 442-692 19-313 (361)
190 KOG0804 Cytoplasmic Zn-finger 93.8 0.022 4.7E-07 62.6 0.7 43 141-186 176-222 (493)
191 KOG2817 Predicted E3 ubiquitin 93.7 0.045 9.7E-07 59.6 2.9 43 141-183 335-382 (394)
192 PF14668 RICTOR_V: Rapamycin-i 93.7 0.25 5.4E-06 41.8 6.8 65 585-649 4-70 (73)
193 COG5215 KAP95 Karyopherin (imp 93.5 3.8 8.2E-05 47.1 17.3 257 440-704 317-610 (858)
194 KOG3113 Uncharacterized conser 93.5 0.054 1.2E-06 55.4 2.8 51 139-192 110-164 (293)
195 KOG0567 HEAT repeat-containing 93.3 7.6 0.00017 40.8 18.1 196 484-720 65-280 (289)
196 KOG1645 RING-finger-containing 93.3 0.042 9.2E-07 59.7 1.9 61 141-201 5-71 (463)
197 PF02891 zf-MIZ: MIZ/SP-RING z 93.3 0.092 2E-06 40.9 3.3 44 141-184 3-50 (50)
198 KOG1248 Uncharacterized conser 93.1 4 8.7E-05 50.5 18.1 217 455-679 665-899 (1176)
199 KOG1058 Vesicle coat complex C 93.0 3.7 8E-05 48.6 16.8 133 531-683 321-468 (948)
200 KOG4151 Myosin assembly protei 92.9 0.98 2.1E-05 53.5 12.4 192 517-713 494-692 (748)
201 KOG2999 Regulator of Rac1, req 92.9 1.1 2.5E-05 50.9 12.2 152 529-680 85-244 (713)
202 PF12755 Vac14_Fab1_bd: Vacuol 92.8 0.36 7.8E-06 43.1 6.8 86 504-589 4-89 (97)
203 PF12719 Cnd3: Nuclear condens 92.8 5.2 0.00011 43.0 17.1 168 443-618 25-206 (298)
204 PF12717 Cnd1: non-SMC mitotic 92.8 4.8 0.0001 39.8 15.6 92 457-557 1-93 (178)
205 PF08045 CDC14: Cell division 92.7 1.2 2.7E-05 46.7 11.7 95 624-718 107-205 (257)
206 KOG1240 Protein kinase contain 92.7 3 6.5E-05 51.6 16.1 107 488-596 424-536 (1431)
207 KOG2274 Predicted importin 9 [ 92.6 2.4 5.2E-05 51.0 14.9 217 496-720 460-689 (1005)
208 COG5181 HSH155 U2 snRNP splice 92.6 1.2 2.5E-05 51.4 11.9 105 449-556 651-759 (975)
209 KOG1077 Vesicle coat complex A 92.5 28 0.0006 41.4 25.1 176 464-649 309-500 (938)
210 PF08569 Mo25: Mo25-like; Int 92.5 2 4.4E-05 47.0 13.5 197 443-641 75-287 (335)
211 PF14447 Prok-RING_4: Prokaryo 92.5 0.062 1.4E-06 42.3 1.3 47 140-189 7-53 (55)
212 KOG1788 Uncharacterized conser 92.3 2.3 5E-05 51.6 14.1 252 465-722 663-984 (2799)
213 PF12719 Cnd3: Nuclear condens 92.3 2.1 4.5E-05 46.1 13.2 168 486-660 26-208 (298)
214 KOG1060 Vesicle coat complex A 92.2 25 0.00054 42.2 22.2 247 453-719 152-457 (968)
215 KOG1240 Protein kinase contain 92.1 5 0.00011 49.8 17.0 263 445-723 426-728 (1431)
216 PF14570 zf-RING_4: RING/Ubox 92.0 0.13 2.7E-06 39.7 2.4 43 143-185 1-47 (48)
217 PF06371 Drf_GBD: Diaphanous G 91.9 1.8 3.8E-05 42.8 11.3 110 444-555 66-186 (187)
218 PF08569 Mo25: Mo25-like; Int 91.8 8.1 0.00018 42.4 17.1 197 482-680 72-285 (335)
219 COG5109 Uncharacterized conser 91.7 1.1 2.4E-05 47.4 9.8 43 141-183 337-384 (396)
220 KOG0915 Uncharacterized conser 91.4 2.2 4.8E-05 53.8 13.3 225 445-681 819-1071(1702)
221 PF08045 CDC14: Cell division 91.4 1.8 3.9E-05 45.5 11.1 94 461-554 108-205 (257)
222 KOG4172 Predicted E3 ubiquitin 91.1 0.07 1.5E-06 41.7 0.3 44 142-185 9-53 (62)
223 KOG3800 Predicted E3 ubiquitin 91.0 0.16 3.5E-06 53.2 2.8 49 142-190 2-55 (300)
224 KOG1001 Helicase-like transcri 91.0 0.056 1.2E-06 64.2 -0.6 49 141-190 455-504 (674)
225 smart00744 RINGv The RING-vari 90.9 0.28 6E-06 38.1 3.4 41 142-182 1-49 (49)
226 PF12717 Cnd1: non-SMC mitotic 90.9 7 0.00015 38.7 14.4 92 499-598 1-93 (178)
227 PF11793 FANCL_C: FANCL C-term 90.8 0.061 1.3E-06 45.1 -0.4 47 140-186 2-66 (70)
228 PF05918 API5: Apoptosis inhib 90.5 13 0.00028 43.4 17.8 132 444-593 23-158 (556)
229 KOG1039 Predicted E3 ubiquitin 90.5 0.16 3.5E-06 55.3 2.4 49 138-186 159-221 (344)
230 PF06025 DUF913: Domain of Unk 90.4 7.9 0.00017 43.3 15.7 216 446-662 111-374 (379)
231 KOG0825 PHD Zn-finger protein 90.3 0.073 1.6E-06 61.9 -0.4 47 140-187 123-172 (1134)
232 PF11698 V-ATPase_H_C: V-ATPas 90.3 0.68 1.5E-05 42.9 5.9 70 650-719 44-114 (119)
233 KOG0828 Predicted E3 ubiquitin 90.2 0.16 3.4E-06 56.5 2.0 33 155-187 603-635 (636)
234 KOG0883 Cyclophilin type, U bo 90.2 0.2 4.3E-06 54.3 2.7 53 139-192 39-91 (518)
235 KOG2999 Regulator of Rac1, req 90.0 4.7 0.0001 46.2 13.2 153 568-720 83-242 (713)
236 PF13764 E3_UbLigase_R4: E3 ub 89.7 33 0.00072 42.0 21.1 210 445-660 118-386 (802)
237 KOG0211 Protein phosphatase 2A 89.6 9.6 0.00021 46.2 16.3 263 444-716 236-504 (759)
238 KOG1734 Predicted RING-contain 89.5 0.087 1.9E-06 54.4 -0.6 55 139-193 223-288 (328)
239 KOG0301 Phospholipase A2-activ 89.5 7.7 0.00017 45.4 14.6 165 449-618 549-725 (745)
240 PF08324 PUL: PUL domain; Int 89.0 4 8.7E-05 43.0 11.6 183 488-670 65-266 (268)
241 KOG4464 Signaling protein RIC- 88.6 19 0.00042 40.0 16.2 101 457-557 110-232 (532)
242 KOG3665 ZYG-1-like serine/thre 88.4 9.6 0.00021 46.0 15.4 194 509-718 494-695 (699)
243 KOG4653 Uncharacterized conser 88.4 2.9 6.4E-05 50.0 10.6 177 535-720 735-918 (982)
244 PF12460 MMS19_C: RNAPII trans 88.4 7.4 0.00016 44.0 13.9 187 443-639 188-396 (415)
245 KOG2611 Neurochondrin/leucine- 88.3 52 0.0011 37.5 19.7 186 491-678 16-225 (698)
246 PF06025 DUF913: Domain of Unk 88.3 9.7 0.00021 42.6 14.4 219 463-701 3-254 (379)
247 PF06371 Drf_GBD: Diaphanous G 88.2 1.8 4E-05 42.7 7.9 77 602-678 100-187 (187)
248 KOG4653 Uncharacterized conser 88.1 11 0.00024 45.4 15.0 184 443-637 726-918 (982)
249 KOG2611 Neurochondrin/leucine- 87.9 18 0.00039 41.1 15.6 146 531-676 15-180 (698)
250 KOG2114 Vacuolar assembly/sort 87.6 3.8 8.3E-05 49.0 10.8 39 141-183 841-880 (933)
251 KOG0414 Chromosome condensatio 87.2 4.5 9.8E-05 50.1 11.5 142 443-597 918-1064(1251)
252 KOG0567 HEAT repeat-containing 87.2 18 0.00039 38.2 14.3 195 443-678 66-280 (289)
253 KOG3161 Predicted E3 ubiquitin 87.2 0.33 7.2E-06 55.7 2.0 61 139-202 10-78 (861)
254 COG5175 MOT2 Transcriptional r 86.5 0.46 9.9E-06 50.6 2.5 51 139-190 14-68 (480)
255 KOG1820 Microtubule-associated 86.3 16 0.00034 44.8 15.5 186 445-637 254-443 (815)
256 PF08324 PUL: PUL domain; Int 86.3 3.3 7.1E-05 43.6 9.0 135 580-714 122-268 (268)
257 KOG0827 Predicted E3 ubiquitin 85.9 0.5 1.1E-05 51.3 2.4 52 138-191 2-61 (465)
258 PF02985 HEAT: HEAT repeat; I 85.6 1.4 3E-05 30.4 3.8 29 487-515 1-29 (31)
259 KOG1832 HIV-1 Vpr-binding prot 84.9 17 0.00037 44.0 14.2 119 603-721 595-774 (1516)
260 KOG2274 Predicted importin 9 [ 84.4 34 0.00073 41.7 16.5 229 455-691 461-702 (1005)
261 KOG1571 Predicted E3 ubiquitin 84.1 0.61 1.3E-05 50.5 2.1 48 134-185 299-346 (355)
262 KOG2032 Uncharacterized conser 84.0 86 0.0019 35.9 19.3 261 442-720 256-531 (533)
263 KOG0301 Phospholipase A2-activ 83.9 19 0.0004 42.4 13.8 175 493-672 551-740 (745)
264 KOG2025 Chromosome condensatio 83.4 36 0.00078 40.5 15.8 106 485-594 84-190 (892)
265 PF11707 Npa1: Ribosome 60S bi 83.2 57 0.0012 35.7 17.1 158 443-600 55-240 (330)
266 COG5219 Uncharacterized conser 83.0 0.57 1.2E-05 56.0 1.4 45 142-186 1471-1523(1525)
267 PF05918 API5: Apoptosis inhib 82.7 22 0.00048 41.6 14.0 98 443-552 58-158 (556)
268 KOG4535 HEAT and armadillo rep 82.5 1.1 2.5E-05 50.1 3.4 178 460-637 407-603 (728)
269 KOG1788 Uncharacterized conser 82.5 46 0.00099 41.3 16.3 220 444-680 720-984 (2799)
270 PF02985 HEAT: HEAT repeat; I 82.2 2.8 6E-05 28.9 4.2 29 651-679 2-30 (31)
271 KOG2062 26S proteasome regulat 81.8 19 0.0004 42.9 12.8 132 486-637 519-653 (929)
272 COG5627 MMS21 DNA repair prote 81.6 1.2 2.6E-05 45.3 3.0 66 140-205 189-260 (275)
273 KOG0211 Protein phosphatase 2A 81.5 20 0.00044 43.5 13.6 150 445-597 356-508 (759)
274 PF14500 MMS19_N: Dos2-interac 81.4 58 0.0013 34.5 15.7 214 449-680 4-239 (262)
275 COG5194 APC11 Component of SCF 81.3 1.5 3.4E-05 37.2 3.0 44 142-186 33-81 (88)
276 PF12031 DUF3518: Domain of un 81.2 2.5 5.3E-05 43.8 5.1 79 583-661 139-228 (257)
277 COG5209 RCD1 Uncharacterized p 80.9 8.7 0.00019 39.4 8.7 143 462-605 118-276 (315)
278 smart00638 LPD_N Lipoprotein N 80.7 56 0.0012 38.4 17.1 164 528-715 358-540 (574)
279 PF12460 MMS19_C: RNAPII trans 80.6 55 0.0012 37.0 16.3 128 568-698 271-413 (415)
280 KOG4185 Predicted E3 ubiquitin 80.6 1.4 2.9E-05 47.4 3.2 62 142-203 5-77 (296)
281 KOG2062 26S proteasome regulat 80.6 99 0.0022 37.2 18.0 150 533-705 525-679 (929)
282 KOG1493 Anaphase-promoting com 80.5 0.43 9.3E-06 40.1 -0.5 49 138-186 29-81 (84)
283 KOG3665 ZYG-1-like serine/thre 80.5 43 0.00094 40.5 16.0 190 467-673 494-692 (699)
284 KOG0396 Uncharacterized conser 80.4 0.79 1.7E-05 49.7 1.3 50 140-189 330-382 (389)
285 KOG1943 Beta-tubulin folding c 79.4 94 0.002 38.8 18.0 225 442-675 339-608 (1133)
286 PF11701 UNC45-central: Myosin 79.3 5.3 0.00011 38.9 6.6 134 457-595 18-157 (157)
287 PF12031 DUF3518: Domain of un 79.1 6.2 0.00013 41.0 7.1 128 583-710 81-235 (257)
288 PF10363 DUF2435: Protein of u 78.7 6.3 0.00014 34.8 6.3 70 444-515 3-72 (92)
289 KOG1967 DNA repair/transcripti 78.6 9.4 0.0002 46.3 9.3 150 443-593 866-1020(1030)
290 cd03561 VHS VHS domain family; 77.7 15 0.00032 34.6 9.0 73 443-515 36-112 (133)
291 KOG1058 Vesicle coat complex C 77.6 49 0.0011 39.7 14.5 209 443-679 133-347 (948)
292 cd03569 VHS_Hrs_Vps27p VHS dom 77.3 14 0.00029 35.5 8.6 73 442-514 39-113 (142)
293 KOG0298 DEAD box-containing he 77.3 1.7 3.7E-05 54.0 2.9 45 137-182 1150-1195(1394)
294 PF04641 Rtf2: Rtf2 RING-finge 77.0 2.7 5.8E-05 44.5 4.0 37 139-175 33-70 (260)
295 PRK14707 hypothetical protein; 76.3 1.9E+02 0.0041 39.1 19.9 258 446-707 165-432 (2710)
296 KOG4362 Transcriptional regula 76.3 1.1 2.4E-05 52.7 1.0 64 140-203 21-86 (684)
297 PF14668 RICTOR_V: Rapamycin-i 76.2 13 0.00028 31.5 7.1 66 625-691 4-70 (73)
298 PF11701 UNC45-central: Myosin 76.0 9.4 0.0002 37.1 7.3 142 488-633 5-155 (157)
299 KOG4265 Predicted E3 ubiquitin 75.9 1.7 3.8E-05 47.0 2.3 47 140-187 290-337 (349)
300 KOG4535 HEAT and armadillo rep 75.9 5.8 0.00013 44.8 6.3 160 438-597 427-603 (728)
301 KOG0414 Chromosome condensatio 75.2 18 0.00039 45.1 10.6 136 569-718 920-1062(1251)
302 KOG1814 Predicted E3 ubiquitin 75.2 3.2 6.9E-05 45.8 4.0 60 139-202 183-252 (445)
303 PF05605 zf-Di19: Drought indu 75.1 6.9 0.00015 30.8 5.0 33 139-183 1-39 (54)
304 KOG0915 Uncharacterized conser 75.0 1.9E+02 0.0042 37.7 19.3 212 445-660 957-1183(1702)
305 COG5240 SEC21 Vesicle coat com 74.2 1.9E+02 0.004 34.1 20.9 141 443-594 222-366 (898)
306 cd03568 VHS_STAM VHS domain fa 73.7 19 0.00041 34.6 8.6 74 442-515 35-110 (144)
307 KOG1243 Protein kinase [Genera 73.1 37 0.00081 40.3 12.2 222 482-718 289-513 (690)
308 COG5209 RCD1 Uncharacterized p 72.9 20 0.00044 36.8 8.7 144 503-646 117-277 (315)
309 KOG2933 Uncharacterized conser 72.5 29 0.00063 37.4 10.2 144 442-596 86-233 (334)
310 PF06416 DUF1076: Protein of u 72.5 2.8 6E-05 38.0 2.3 58 133-191 32-96 (113)
311 KOG4275 Predicted E3 ubiquitin 72.4 0.96 2.1E-05 47.5 -0.6 40 139-185 299-341 (350)
312 PF05883 Baculo_RING: Baculovi 71.6 3.6 7.9E-05 38.7 3.0 52 140-192 26-86 (134)
313 PF01347 Vitellogenin_N: Lipop 71.3 22 0.00049 42.1 10.4 165 527-715 395-584 (618)
314 KOG1078 Vesicle coat complex C 70.6 1.3E+02 0.0027 36.5 15.6 68 486-557 245-312 (865)
315 KOG1820 Microtubule-associated 70.5 68 0.0015 39.4 14.1 176 537-718 263-441 (815)
316 PLN02189 cellulose synthase 70.3 2.8 6.1E-05 51.7 2.5 46 141-186 35-87 (1040)
317 smart00288 VHS Domain present 69.2 28 0.00062 32.8 8.6 73 442-514 35-110 (133)
318 cd03561 VHS VHS domain family; 69.2 21 0.00046 33.5 7.7 74 650-723 38-115 (133)
319 PF07814 WAPL: Wings apart-lik 69.0 1.9E+02 0.0042 32.0 16.6 92 487-578 22-116 (361)
320 PF10367 Vps39_2: Vacuolar sor 68.7 8.5 0.00018 34.3 4.7 36 133-168 71-108 (109)
321 KOG2025 Chromosome condensatio 68.5 76 0.0016 37.9 13.2 101 526-630 84-186 (892)
322 PLN02195 cellulose synthase A 67.9 4.3 9.4E-05 49.8 3.4 47 142-188 8-61 (977)
323 KOG2956 CLIP-associating prote 67.8 1.6E+02 0.0035 33.6 15.1 143 529-679 331-478 (516)
324 PF05290 Baculo_IE-1: Baculovi 67.8 14 0.00031 34.6 6.0 51 138-188 78-134 (140)
325 cd03569 VHS_Hrs_Vps27p VHS dom 67.5 22 0.00047 34.1 7.5 73 650-722 42-116 (142)
326 KOG1566 Conserved protein Mo25 67.1 1.4E+02 0.0031 32.4 13.9 198 443-640 78-289 (342)
327 cd03567 VHS_GGA VHS domain fam 67.1 35 0.00077 32.5 8.8 72 443-514 37-115 (139)
328 PF01347 Vitellogenin_N: Lipop 66.8 1.7E+02 0.0038 34.6 16.7 205 445-673 348-584 (618)
329 cd03568 VHS_STAM VHS domain fa 66.6 21 0.00045 34.3 7.2 72 650-721 38-111 (144)
330 PF12530 DUF3730: Protein of u 66.4 1.7E+02 0.0036 30.4 17.0 135 488-636 2-150 (234)
331 KOG1943 Beta-tubulin folding c 66.4 2.8E+02 0.0061 34.9 17.8 139 454-597 554-705 (1133)
332 PF08167 RIX1: rRNA processing 65.9 80 0.0017 30.8 11.3 109 442-554 23-141 (165)
333 KOG2137 Protein kinase [Signal 65.8 34 0.00074 40.7 9.9 129 526-662 388-521 (700)
334 KOG1991 Nuclear transport rece 65.2 3.6E+02 0.0077 33.7 19.8 233 443-680 409-673 (1010)
335 PF11707 Npa1: Ribosome 60S bi 64.6 2.2E+02 0.0047 31.1 19.5 187 441-640 24-240 (330)
336 KOG1967 DNA repair/transcripti 64.5 19 0.00041 43.8 7.6 145 486-631 867-1018(1030)
337 PF08167 RIX1: rRNA processing 64.4 25 0.00055 34.4 7.5 107 487-596 26-142 (165)
338 KOG1243 Protein kinase [Genera 64.4 18 0.00039 42.8 7.3 182 443-634 329-512 (690)
339 PF14726 RTTN_N: Rotatin, an a 63.9 36 0.00079 30.5 7.6 73 437-510 23-95 (98)
340 KOG2137 Protein kinase [Signal 63.8 48 0.001 39.5 10.6 129 485-618 388-517 (700)
341 PLN02436 cellulose synthase A 63.8 4.5 9.8E-05 50.0 2.5 46 141-186 37-89 (1094)
342 KOG1940 Zn-finger protein [Gen 62.8 5.4 0.00012 42.3 2.5 43 140-183 158-204 (276)
343 COG5218 YCG1 Chromosome conden 62.5 36 0.00078 39.6 9.0 106 485-597 90-196 (885)
344 KOG1991 Nuclear transport rece 61.7 2.3E+02 0.0051 35.2 15.9 132 463-600 391-535 (1010)
345 KOG3002 Zn finger protein [Gen 61.4 8 0.00017 41.7 3.6 60 137-203 45-105 (299)
346 PRK06266 transcription initiat 60.9 1.8E+02 0.0039 28.9 13.6 56 137-208 114-170 (178)
347 cd03567 VHS_GGA VHS domain fam 60.7 31 0.00067 32.9 7.1 71 650-720 39-116 (139)
348 KOG1832 HIV-1 Vpr-binding prot 60.7 17 0.00036 44.1 6.1 124 527-650 601-786 (1516)
349 PF10272 Tmpp129: Putative tra 60.5 5.9 0.00013 43.7 2.4 36 155-190 303-355 (358)
350 COG5220 TFB3 Cdk activating ki 60.3 2.7 5.8E-05 43.0 -0.2 47 140-186 10-64 (314)
351 PF00790 VHS: VHS domain; Int 59.8 31 0.00068 32.7 7.0 73 442-514 40-117 (140)
352 PRK14707 hypothetical protein; 59.5 6.3E+02 0.014 34.7 20.5 256 445-704 248-513 (2710)
353 KOG2956 CLIP-associating prote 59.4 3.2E+02 0.007 31.3 16.8 184 443-636 285-476 (516)
354 KOG4739 Uncharacterized protei 58.7 4.4 9.5E-05 41.8 1.0 40 151-193 15-55 (233)
355 COG1675 TFA1 Transcription ini 57.7 41 0.00089 33.4 7.5 54 137-206 110-164 (176)
356 PF11865 DUF3385: Domain of un 57.6 76 0.0016 30.9 9.4 145 443-595 9-155 (160)
357 PLN02638 cellulose synthase A 57.3 6.6 0.00014 48.7 2.3 46 141-186 18-70 (1079)
358 KOG2930 SCF ubiquitin ligase, 57.3 7.9 0.00017 34.6 2.2 27 157-184 80-106 (114)
359 KOG1941 Acetylcholine receptor 57.0 5.3 0.00011 43.7 1.3 44 139-182 364-412 (518)
360 PF14666 RICTOR_M: Rapamycin-i 56.7 2.5E+02 0.0054 29.1 14.0 128 582-719 78-224 (226)
361 KOG2032 Uncharacterized conser 56.6 92 0.002 35.7 10.8 150 495-645 267-423 (533)
362 smart00288 VHS Domain present 56.2 50 0.0011 31.1 7.7 73 650-722 38-113 (133)
363 COG1592 Rubrerythrin [Energy p 56.0 45 0.00097 32.9 7.4 25 140-184 134-158 (166)
364 smart00638 LPD_N Lipoprotein N 56.0 4E+02 0.0086 31.3 17.6 203 444-674 311-541 (574)
365 KOG1020 Sister chromatid cohes 55.6 2E+02 0.0043 37.5 14.3 107 486-599 816-923 (1692)
366 KOG2034 Vacuolar sorting prote 54.6 31 0.00066 42.0 7.1 37 137-173 814-852 (911)
367 COG5116 RPN2 26S proteasome re 53.4 1.1E+02 0.0025 35.6 10.9 124 493-637 523-650 (926)
368 cd03572 ENTH_epsin_related ENT 53.3 47 0.001 31.0 6.7 72 650-721 39-120 (122)
369 PF00790 VHS: VHS domain; Int 52.7 37 0.00081 32.1 6.3 73 650-722 43-120 (140)
370 PF12530 DUF3730: Protein of u 52.5 2.8E+02 0.0062 28.6 17.8 130 453-596 10-150 (234)
371 PF11865 DUF3385: Domain of un 52.0 1E+02 0.0022 30.0 9.3 144 568-718 10-155 (160)
372 PLN02915 cellulose synthase A 50.8 9.6 0.00021 47.2 2.3 46 141-186 16-68 (1044)
373 KOG4464 Signaling protein RIC- 50.5 2.3E+02 0.005 32.0 12.3 130 531-660 49-198 (532)
374 TIGR00373 conserved hypothetic 50.1 37 0.00079 33.1 5.8 37 137-189 106-142 (158)
375 cd00350 rubredoxin_like Rubred 50.1 12 0.00026 26.4 1.8 11 174-184 16-26 (33)
376 COG2176 PolC DNA polymerase II 47.8 13 0.00029 46.4 2.8 46 135-192 909-957 (1444)
377 KOG0314 Predicted E3 ubiquitin 47.7 8.7 0.00019 43.4 1.2 69 135-205 214-286 (448)
378 PF14353 CpXC: CpXC protein 47.4 15 0.00032 34.3 2.6 47 140-186 1-49 (128)
379 PF04821 TIMELESS: Timeless pr 46.9 1.6E+02 0.0035 31.2 10.6 144 520-679 33-209 (266)
380 PRK11088 rrmA 23S rRNA methylt 46.0 9.5 0.00021 40.3 1.1 27 140-166 2-31 (272)
381 PHA02862 5L protein; Provision 46.0 18 0.00039 34.5 2.7 45 142-187 4-54 (156)
382 smart00531 TFIIE Transcription 45.7 40 0.00087 32.3 5.3 39 138-188 97-136 (147)
383 PF12830 Nipped-B_C: Sister ch 45.5 1.8E+02 0.0039 29.0 10.2 124 568-702 8-141 (187)
384 PHA02825 LAP/PHD finger-like p 45.2 21 0.00046 34.7 3.2 48 139-187 7-60 (162)
385 cd08050 TAF6 TATA Binding Prot 44.4 1.7E+02 0.0038 32.2 10.7 127 444-580 178-321 (343)
386 COG5218 YCG1 Chromosome conden 43.4 6E+02 0.013 30.2 14.6 96 526-628 90-190 (885)
387 PF07191 zinc-ribbons_6: zinc- 43.3 2.6 5.5E-05 35.2 -2.8 41 140-186 1-41 (70)
388 PF14726 RTTN_N: Rotatin, an a 43.2 1.8E+02 0.004 26.0 8.6 65 486-550 30-94 (98)
389 cd00729 rubredoxin_SM Rubredox 42.5 17 0.00038 25.9 1.7 10 175-184 18-27 (34)
390 PLN02400 cellulose synthase 42.5 12 0.00025 46.7 1.3 46 141-186 37-89 (1085)
391 KOG0825 PHD Zn-finger protein 42.2 21 0.00045 42.6 3.1 48 135-182 91-150 (1134)
392 KOG1020 Sister chromatid cohes 40.8 3.3E+02 0.0071 35.7 13.0 106 527-639 816-923 (1692)
393 KOG2933 Uncharacterized conser 40.7 1.5E+02 0.0032 32.3 8.8 134 570-715 90-229 (334)
394 PF13251 DUF4042: Domain of un 40.2 2.5E+02 0.0054 28.1 10.0 137 460-597 2-174 (182)
395 COG5242 TFB4 RNA polymerase II 40.0 15 0.00033 37.4 1.4 15 140-154 260-274 (296)
396 KOG1812 Predicted E3 ubiquitin 39.7 35 0.00075 38.3 4.4 69 140-209 146-228 (384)
397 PF14225 MOR2-PAG1_C: Cell mor 39.6 4.9E+02 0.011 27.6 16.9 219 492-728 13-262 (262)
398 PF10521 DUF2454: Protein of u 39.1 2.1E+02 0.0046 30.5 10.1 72 443-514 118-202 (282)
399 PF06012 DUF908: Domain of Unk 39.1 96 0.0021 33.9 7.6 75 542-616 237-323 (329)
400 PF14500 MMS19_N: Dos2-interac 39.1 4.9E+02 0.011 27.5 16.5 216 490-720 3-237 (262)
401 PF06685 DUF1186: Protein of u 38.9 4.2E+02 0.0091 27.9 11.9 72 525-607 71-153 (249)
402 PF10363 DUF2435: Protein of u 37.4 1.1E+02 0.0024 27.0 6.3 63 619-682 14-76 (92)
403 cd00730 rubredoxin Rubredoxin; 37.0 16 0.00034 28.6 0.8 13 136-148 30-42 (50)
404 PLN03086 PRLI-interacting fact 36.7 35 0.00075 40.1 3.8 52 135-186 448-515 (567)
405 PF14446 Prok-RING_1: Prokaryo 36.7 28 0.00062 27.6 2.2 26 141-166 6-35 (54)
406 COG5098 Chromosome condensatio 36.5 2.1E+02 0.0047 34.3 9.9 106 570-680 301-417 (1128)
407 KOG0392 SNF2 family DNA-depend 35.3 6.3E+02 0.014 32.7 14.0 224 443-680 76-327 (1549)
408 PF10521 DUF2454: Protein of u 34.9 2.4E+02 0.0053 30.0 9.8 70 568-637 119-203 (282)
409 PF14663 RasGEF_N_2: Rapamycin 33.9 1.2E+02 0.0027 27.8 6.3 39 487-525 9-47 (115)
410 COG5116 RPN2 26S proteasome re 33.6 93 0.002 36.3 6.4 66 608-681 550-618 (926)
411 KOG3899 Uncharacterized conser 33.6 21 0.00046 37.7 1.3 29 161-189 328-368 (381)
412 PF14569 zf-UDP: Zinc-binding 33.5 37 0.0008 29.0 2.5 48 141-188 10-64 (80)
413 KOG4718 Non-SMC (structural ma 33.3 26 0.00056 35.5 1.8 46 141-187 182-228 (235)
414 PF00301 Rubredoxin: Rubredoxi 33.2 18 0.00039 27.9 0.6 13 136-148 30-42 (47)
415 PF04388 Hamartin: Hamartin pr 32.3 4.9E+02 0.011 31.5 12.7 133 486-637 4-140 (668)
416 PF04821 TIMELESS: Timeless pr 32.0 6.3E+02 0.014 26.7 12.5 57 444-515 13-72 (266)
417 COG4530 Uncharacterized protei 31.7 34 0.00073 31.0 2.1 30 140-169 9-43 (129)
418 KOG1949 Uncharacterized conser 31.5 1E+03 0.022 29.0 14.6 237 489-729 177-430 (1005)
419 cd00197 VHS_ENTH_ANTH VHS, ENT 31.3 3.1E+02 0.0067 24.7 8.6 71 443-513 36-113 (115)
420 COG5098 Chromosome condensatio 31.0 1.5E+02 0.0033 35.5 7.6 108 488-597 301-415 (1128)
421 PRK12495 hypothetical protein; 31.0 63 0.0014 33.1 4.1 32 137-187 39-70 (226)
422 KOG2676 Uncharacterized conser 30.9 43 0.00094 36.7 3.1 62 464-525 376-440 (478)
423 PF08506 Cse1: Cse1; InterPro 30.6 8E+02 0.017 27.4 14.8 144 566-715 208-370 (370)
424 COG3813 Uncharacterized protei 30.4 46 0.00099 27.9 2.5 37 157-196 26-62 (84)
425 PF12830 Nipped-B_C: Sister ch 30.3 2.3E+02 0.0049 28.3 8.1 68 442-514 6-73 (187)
426 PF03854 zf-P11: P-11 zinc fin 29.5 25 0.00055 27.1 0.8 37 151-188 11-48 (50)
427 KOG2462 C2H2-type Zn-finger pr 28.9 19 0.00042 37.9 0.1 53 136-188 157-228 (279)
428 PF12726 SEN1_N: SEN1 N termin 28.8 4.1E+02 0.0088 32.5 11.5 156 568-723 441-611 (727)
429 KOG0883 Cyclophilin type, U bo 28.7 28 0.00061 38.3 1.3 75 138-212 99-183 (518)
430 PF12906 RINGv: RING-variant d 28.6 32 0.0007 26.3 1.3 29 153-181 13-47 (47)
431 smart00834 CxxC_CXXC_SSSS Puta 28.4 37 0.0008 24.6 1.6 32 140-185 5-36 (41)
432 cd03565 VHS_Tom1 VHS domain fa 28.3 3.9E+02 0.0085 25.4 8.9 72 443-514 37-114 (141)
433 PF08216 CTNNBL: Catenin-beta- 28.2 58 0.0013 29.7 3.0 41 463-504 65-105 (108)
434 cd00197 VHS_ENTH_ANTH VHS, ENT 28.1 2.7E+02 0.0058 25.1 7.6 70 650-719 38-114 (115)
435 KOG2487 RNA polymerase II tran 28.0 21 0.00045 37.6 0.1 35 139-194 272-308 (314)
436 PF08389 Xpo1: Exportin 1-like 27.9 2.2E+02 0.0048 26.2 7.3 105 443-551 25-148 (148)
437 PF07800 DUF1644: Protein of u 26.7 23 0.0005 34.4 0.2 25 139-164 1-25 (162)
438 cd03565 VHS_Tom1 VHS domain fa 26.5 3.3E+02 0.0073 25.9 8.1 74 650-723 39-118 (141)
439 COG5236 Uncharacterized conser 26.4 45 0.00098 36.2 2.3 46 139-184 60-106 (493)
440 KOG1566 Conserved protein Mo25 26.4 8.9E+02 0.019 26.5 15.7 198 522-720 74-286 (342)
441 PF14838 INTS5_C: Integrator c 26.2 1.1E+03 0.025 28.5 13.9 194 442-647 179-400 (696)
442 PF08746 zf-RING-like: RING-li 25.6 76 0.0016 23.9 2.8 39 143-181 1-43 (43)
443 PF07923 N1221: N1221-like pro 25.4 1.6E+02 0.0035 31.6 6.5 55 442-496 58-126 (293)
444 KOG1087 Cytosolic sorting prot 24.9 2.1E+02 0.0045 33.1 7.3 72 650-721 39-113 (470)
445 PF11791 Aconitase_B_N: Aconit 24.8 1.1E+02 0.0024 29.7 4.4 28 569-596 95-122 (154)
446 PF06844 DUF1244: Protein of u 24.5 43 0.00094 27.6 1.3 12 162-173 12-23 (68)
447 COG5656 SXM1 Importin, protein 24.2 1.4E+03 0.03 28.1 18.4 105 484-590 458-564 (970)
448 KOG2593 Transcription initiati 24.2 1.1E+03 0.024 26.9 12.7 49 137-197 125-176 (436)
449 KOG1848 Uncharacterized conser 24.1 1.6E+02 0.0036 37.9 6.7 163 538-708 853-1033(1610)
450 PF04499 SAPS: SIT4 phosphatas 24.1 5.2E+02 0.011 29.9 10.5 111 608-721 20-150 (475)
451 PF14666 RICTOR_M: Rapamycin-i 24.0 8.2E+02 0.018 25.3 12.1 125 546-678 83-225 (226)
452 PF08506 Cse1: Cse1; InterPro 23.5 8.3E+02 0.018 27.3 11.7 129 459-592 226-370 (370)
453 KOG2199 Signal transducing ada 23.3 2.4E+02 0.0052 31.6 7.1 71 650-720 46-118 (462)
454 PF06685 DUF1186: Protein of u 23.1 5.7E+02 0.012 26.9 9.7 73 606-689 70-153 (249)
455 PHA03096 p28-like protein; Pro 22.9 51 0.0011 35.4 1.9 44 141-184 179-232 (284)
456 PF14205 Cys_rich_KTR: Cystein 22.9 50 0.0011 26.3 1.4 10 175-184 28-37 (55)
457 PF09162 Tap-RNA_bind: Tap, RN 22.8 51 0.0011 29.0 1.6 25 154-181 10-34 (88)
458 KOG4642 Chaperone-dependent E3 22.8 17 0.00037 37.8 -1.5 65 133-199 18-82 (284)
459 PF06012 DUF908: Domain of Unk 22.6 4.2E+02 0.0092 28.9 9.1 62 584-645 238-305 (329)
460 PLN03076 ARF guanine nucleotid 22.5 4.7E+02 0.01 35.5 10.7 168 461-635 1109-1297(1780)
461 PHA00733 hypothetical protein 22.4 1.2E+02 0.0026 28.5 4.1 53 139-210 72-126 (128)
462 PF04423 Rad50_zn_hook: Rad50 22.4 25 0.00054 27.6 -0.4 12 177-188 22-33 (54)
463 COG3364 Zn-ribbon containing p 22.3 43 0.00093 30.0 1.0 24 156-184 6-29 (112)
464 PF13251 DUF4042: Domain of un 22.2 8E+02 0.017 24.5 10.4 106 572-680 44-176 (182)
465 PF11791 Aconitase_B_N: Aconit 22.1 85 0.0018 30.4 3.0 45 651-706 96-140 (154)
466 KOG4231 Intracellular membrane 21.6 46 0.001 38.1 1.3 197 437-635 198-397 (763)
467 PLN03076 ARF guanine nucleotid 21.5 2.2E+03 0.048 29.4 18.9 265 449-720 1142-1489(1780)
468 PF09845 DUF2072: Zn-ribbon co 21.3 44 0.00095 31.5 1.0 24 156-184 5-28 (131)
469 PF00096 zf-C2H2: Zinc finger, 21.3 30 0.00066 21.6 -0.1 13 141-153 1-13 (23)
470 KOG2038 CAATT-binding transcri 21.2 7.1E+02 0.015 30.5 10.7 148 532-690 201-382 (988)
471 PRK05978 hypothetical protein; 21.1 55 0.0012 31.6 1.6 32 141-188 34-65 (148)
472 PF01365 RYDR_ITPR: RIH domain 21.0 3.5E+02 0.0076 27.2 7.6 97 603-702 37-153 (207)
473 PF09538 FYDLN_acid: Protein o 20.9 56 0.0012 29.9 1.5 15 174-188 25-39 (108)
474 KOG3842 Adaptor protein Pellin 20.7 90 0.0019 33.6 3.1 51 138-188 339-416 (429)
475 PF07539 DRIM: Down-regulated 20.7 4.8E+02 0.01 24.9 7.9 31 565-595 14-44 (141)
476 TIGR00627 tfb4 transcription f 20.6 62 0.0014 34.6 2.1 14 140-153 255-268 (279)
477 COG3750 Uncharacterized protei 20.6 3.9E+02 0.0085 23.0 6.2 43 30-73 15-59 (85)
478 PF08216 CTNNBL: Catenin-beta- 20.4 77 0.0017 28.9 2.3 41 546-586 65-105 (108)
479 PRK04023 DNA polymerase II lar 20.3 1E+02 0.0022 38.5 3.8 66 140-211 626-698 (1121)
480 KOG1815 Predicted E3 ubiquitin 20.3 70 0.0015 36.6 2.5 36 138-173 68-104 (444)
481 KOG1087 Cytosolic sorting prot 20.0 2.8E+02 0.0062 32.0 7.2 71 443-513 37-110 (470)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=5.8e-26 Score=282.01 Aligned_cols=279 Identities=24% Similarity=0.291 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 442 IETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
....+..|++.|+++ +++.|..|+..|+.|++.++++|..|++ .|+||.|+.+|.+++..++++|+.+|.+|+.++.
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 367899999999976 7889999999999999999999999997 7999999999999999999999999999999999
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC---cchhhh-hhccCcHHHHHHhhcCCC---HHHHHHHHHH
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIK-IGRSGAIGPLVDLLGNGT---PRGKKDAATA 591 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---~e~k~~-I~~~g~I~~Lv~LL~~~~---~~v~~~Al~a 591 (729)
++..|+..|+|++|+.+|++++++.|++|+++|++|+.+ +.++.. ++..|+|+.|+.+|++++ ..++..|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 445545 456899999999999874 3356778899
Q ss_pred HHhcccCcHHHHH-HHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccC-CHHHHH
Q 004806 592 LFNLSIYHENKAR-IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKE 667 (729)
Q Consensus 592 L~nLs~~~en~~~-lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke 667 (729)
|+|||.+++++.. +++.|+|+.|+.+| +.+..++..|+.+|.+++.+ ++++..+++.|+|+.|+++|+++ ++.+++
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999998865 58999999999999 46788899999999988874 67899999999999999999875 569999
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC---------HHHHHHHHHHHHHhhc
Q 004806 668 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT---------PRAKEKAQALLSYFRN 720 (729)
Q Consensus 668 ~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~---------~rvr~~A~~lL~~L~~ 720 (729)
+|+++|++||.++.+++..+++.|+++.|+.++.... ...++.|.|+|.++.+
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998644 3458999999999876
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-25 Score=245.48 Aligned_cols=279 Identities=23% Similarity=0.289 Sum_probs=250.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.+|+.|. ..++..|.+|+++|.++|.++.+....++++|++|.|+.+|.+++..+++.|+|+|+|++.+ +..|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 478999999997 55689999999999999999999999999999999999999999999999999999999987 6678
Q ss_pred HHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-
Q 004806 521 SAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 597 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~-e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~- 597 (729)
..+...|++++|+.++...+. .+..+++|+|.||+........+.. ..++|.|..+|.+.+..+..+|+|||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999988774 7889999999999987654444332 4889999999999999999999999999996
Q ss_pred CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 004806 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 674 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~ 674 (729)
.++..+.+++.|+++.|+.+| ..+..++..|+.+++|++...+. .+.++..|+++.|..++. +.....+..|+|+|.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 556777888999999999999 46667888999999999985555 677789999999999998 556668999999999
Q ss_pred HHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 675 nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|+++++.++.+.|++.|.+|.|+.+++++.-++|+.|+|++.++...
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999988653
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.4e-24 Score=269.85 Aligned_cols=279 Identities=23% Similarity=0.322 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.+.++.|+++|++++...|..|++.|++++..+.+++..+.++|+||.|+.+|.+++..++++|+|+|.||+.++.+...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999987655444
Q ss_pred -HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-------------------------------------hh-
Q 004806 523 -IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------------------IK- 563 (729)
Q Consensus 523 -I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-------------------------------------~~- 563 (729)
+.+.|+|++|+++|++++.+.+..|+++|++|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 557899999999999999999999999999996422111 01
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC--Cc
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT--IP 639 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~--~~ 639 (729)
....|+++.|++||++++..+++.|+++|.|++. .++++..++..|+|+.|+.+|. .+..+...++++|.+|+. ..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 1135899999999999999999999999999988 5567888999999999999994 667888999999999996 33
Q ss_pred chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 640 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+.+..+++.|+|+.|+++|...+..+++.|+.+|.|++.+.+ .+..+..+|+++.|++++++|++++|+.|.++|..|.
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 446678899999999999999999999999999999999876 6677888999999999999999999999999888776
Q ss_pred cCc
Q 004806 720 NQR 722 (729)
Q Consensus 720 ~~~ 722 (729)
+..
T Consensus 764 ~~~ 766 (2102)
T PLN03200 764 KHF 766 (2102)
T ss_pred hCC
Confidence 654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-24 Score=223.18 Aligned_cols=275 Identities=24% Similarity=0.367 Sum_probs=254.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
.+..|+..+..+..++|+.+..+|.+|+.- ..+|..|+..|++.+|..+-+++|..+|.+|..+|.|+....++|+.++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 345666666777788999999999999986 5899999999999999998899999999999999999999999999999
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccC--cHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g--~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
.+|++|.|+.+|++++.+++++++.+|.+++.+...|+.+.+.+ .++.|++|+.+++++++-.|..+|.||+...+..
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999999999999886 9999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCC
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 680 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~ 680 (729)
..++++|.+|.+++|| ++.....-..+.++.|++.++-+...|+++|++..||.+|+.+ +++.+-+|+.+||+|+..+
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 9999999999999999 4666777888999999999999989999999999999999875 5669999999999999988
Q ss_pred HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 681 ~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..++..+.+.|+||+|..|+..+.-.++..-..++..|.-
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 8899999999999999999999998888887777776654
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-24 Score=222.63 Aligned_cols=277 Identities=25% Similarity=0.339 Sum_probs=258.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.+.+..|.++-++.+..+|++++.+|.+++. +.+||..++.+|++|.|+.+|++.|..+|+.++++|.|++.+..+|+.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 4567788887788889999999999999987 678999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 523 IANAN--AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 523 I~~~g--~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
+++.+ .++.|+.+++++++.++..|..+|.||+.+.+++..|++.|.+|.+++||+++.-......+.++.|++..+-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99987 9999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 601 NKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
|..-++++|.+..|+.+|+ ++.++...|+.+|+||+. .+..+..|.+.|+|+.+.+++..+.-.+++....++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999999999999999994 567799999999999998 6778999999999999999999999999999899999888
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.++. .+..+.+.|.++.|+.+..+.+.+++..|+++|-+|...
T Consensus 405 l~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 405 LNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred hccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 8765 678899999999999999999999999999999888653
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=3e-23 Score=213.87 Aligned_cols=278 Identities=22% Similarity=0.245 Sum_probs=244.1
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.+|+++. ....-.|.+|++.|.+++.+.......++++|++|.++.+|.+...+++++|+|+|+|++.+ +..|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 478999999995 44555688999999999998877777888999999999999999999999999999999987 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhccCcch---hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 521 SAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDN---KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~--~e~r~~Aa~aL~nLS~~~e~---k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
..+.+.|++.+|+.+|.+.. ..+..++.++|.||+..... -..| ..++|.|.+|+.+.++++..+|+|||..|
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 88999999999999998764 47889999999999974222 2222 36789999999999999999999999999
Q ss_pred ccCc-HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 596 SIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 596 s~~~-en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
+..+ +..+.+++.|..+.|+++| .++..+...|+..++|+.+..+. .+.+++.|+++.+..+|.+....++..|||.
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 9854 5667788999999999999 56777888999999999985555 5677899999999999999888999999999
Q ss_pred HHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 673 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 673 L~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
|.|+.+++.++.+.|++.+.+|+|+.++.+-.-++++.|.|++.+.....
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999988876543
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.9e-22 Score=219.12 Aligned_cols=280 Identities=23% Similarity=0.279 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCcc-H
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLSINDNN-K 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~-~v~e~Al~aL~nLs~~~~~-k 520 (729)
.+.|+.++.++.+.+.+++.+|+++|.+++.+++..|..+.+.|+++.|+.++...+. .+..+++|+|.||+.+.+. -
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 4678899999999999999999999999999999999999999999999999988776 6789999999999987532 2
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
..-.-..+++.|..+|.+.++++...|+++|.+|+... +.-..+++.|+++.|+++|.+....++.-|++++.|+....
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 22233468999999999999999999999999999754 44455677899999999999999999999999999998854
Q ss_pred -HHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 600 -ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 600 -en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
...+.+++.|+++.|..++. +...++..|++++.|++. ..+..++++++|.+|.|+.+|.++..+.+..|+|++.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 55677889999999999994 445688999999999988 55678999999999999999999999999999999999
Q ss_pred HhhCC-HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 676 LCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 676 L~~~~-~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
++... ++....+++.|+|++|+.++...+.++...+...|.++....
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 99875 567788899999999999998888888889999888886543
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=7.3e-23 Score=172.81 Aligned_cols=73 Identities=47% Similarity=0.862 Sum_probs=64.3
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 209 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~ 209 (729)
+|++|+||||++||+|||++++||||||.+|++|+..++.+||+|+++++..+|+||..||+.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 6999999999999999999999999999999999999778999999999999999999999999999999853
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=5.5e-21 Score=197.31 Aligned_cols=278 Identities=22% Similarity=0.247 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCcc-
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNN- 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--~~v~e~Al~aL~nLs~~~~~- 519 (729)
.+.|+.++++|.+++.+++.++.++|.+++.+++..|..+.+.|++..|+.+|.+.- ..+..++.|.|.||+...+.
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 467899999999999999999999999999999999999999999999999998764 57889999999999975322
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
...-.-..++|.|.+++.+.++++...|+++|.+|+-.+..+ ..+.+.|..+.|+++|.+++..++.-|++.+.|+...
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 111112346899999999999999999999999999865544 5566789999999999999999999999999999874
Q ss_pred -cHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 599 -HENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 599 -~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
+...+.+++.|+++.+..+|+ +...++..||+++.|++. +.+..+++++.+.+|.|+++|..-.-..+..|||++.|
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567789999999999994 567889999999999987 66778999999999999999999999999999999999
Q ss_pred HhhCC---HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 676 LCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 676 L~~~~---~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..++. |+....++..|.+.+|+.++..-+.++.+.|..+++++-+
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 98765 6778888999999999999999999999999988877644
No 10
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=5.1e-18 Score=193.10 Aligned_cols=281 Identities=23% Similarity=0.257 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---CccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~---~~~k 520 (729)
..++..+.+|.+.++.+|..|+..|..+++.+.+.+..+.+.|+|+.||.+|.+.+.+++.+|+++|.||... +.||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3468889999999999999999999999999999999999999999999999999999999999999999864 4589
Q ss_pred HHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--------------CHHHH
Q 004806 521 SAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--------------TPRGK 585 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--------------~~~v~ 585 (729)
..|.+.++|+.++++|+. ++.+++++++++||||++++..|..|+. .++..|.+.+-.+ +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999986 7899999999999999999888887764 4456665543211 25678
Q ss_pred HHHHHHHHhccc-CcHHHHHHHH-cCcHHHHHHhc-------CCCHHHHHHHHHHHHHHhCCcc----------------
Q 004806 586 KDAATALFNLSI-YHENKARIVQ-AGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPD---------------- 640 (729)
Q Consensus 586 ~~Al~aL~nLs~-~~en~~~lv~-~G~V~~Lv~LL-------~~~~~v~e~Al~~L~nLa~~~e---------------- 640 (729)
..+..+|.|++. ..+.++++.+ .|+|..|+.++ +.+...+++++.+|.||...-+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999988 7789999987 89999999987 2567889999999999965221
Q ss_pred -----------------hHHH---------------------HHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 004806 641 -----------------GRVA---------------------IGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 641 -----------------~r~~---------------------i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+.. +.+..+|..-..+| .+.++...|.++.+|-||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0010 00111233323344 35678899999999999998763
Q ss_pred ----hhHHHH-HhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcCcC
Q 004806 682 ----RFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 725 (729)
Q Consensus 682 ----~~~~~v-l~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~~~ 725 (729)
..+..+ .++.+++.|+.+++.+++++.+.+..+|++|+.....+
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence 344555 77999999999999999999999999999998876544
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=1.5e-16 Score=185.06 Aligned_cols=276 Identities=19% Similarity=0.253 Sum_probs=225.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
++.|+.|++.|.+++.+....++..|.+|+.. .+|+..+.+.|+|+.|+.++.+++.+++..|+.+|.|||.++..|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 67899999999999999999999999999995 57999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en 601 (729)
++..|++|.|+.+|.++ ..+..+..+|.+||.++++|..+...++++.|+++|-. +..++...++.++.||+.++.|
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999999765 45667999999999999999999999999999997655 4666667777788888888777
Q ss_pred HHHHHHcCcHHHHHHhc-C--------------------------------------CCHHHHHHHHHHHHHH-------
Q 004806 602 KARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANL------- 635 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~--------------------------------------~~~~v~e~Al~~L~nL------- 635 (729)
.+.+++.|+++.|++.. . .+.+..-.++++|+||
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 77777766666555421 0 1122333455666665
Q ss_pred -------------------------------------hCCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 004806 636 -------------------------------------ATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 676 (729)
Q Consensus 636 -------------------------------------a~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL 676 (729)
|..++....+++.|.++.|+++|.. .+.+..-..+.+++++
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 4444455566677788888888865 4677778888999999
Q ss_pred hhCCHhhHHHHH-hCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 677 CTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 677 ~~~~~~~~~~vl-~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..+.. .+..++ +.+++..|+.++++.++.+++.|-.+|.++..+.
T Consensus 606 l~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 606 LFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 98866 555554 4788999999999999999999999888886643
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=3.7e-16 Score=181.81 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC
Q 004806 460 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG 539 (729)
Q Consensus 460 vq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~ 539 (729)
..+.+...|.+|+. +..+...+.+.|.|+.|+.+|++++.+++..++++|.+||...+||..+.+.|+|+.|++++.++
T Consensus 265 Llrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 34567778999998 56888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-
Q 004806 540 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM- 618 (729)
Q Consensus 540 ~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL- 618 (729)
+.+++..++.+|+|||.+++.|..|+..|++|.|+.+|.+++ .+..|+.+|+|||..++++..+...++++.|++++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998764 44668999999999999999999999999999987
Q ss_pred C-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHH
Q 004806 619 D-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV 697 (729)
Q Consensus 619 ~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv 697 (729)
. ++..+...+++++.||+.++...+.+++.++++.|++......... .+.+|.|++.+++..+..+. +.+..|+
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~ 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLA 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence 3 4555556789999999999999999999999999998876543322 34689999999865555554 3788888
Q ss_pred HhhhCCC-HHHHHHHHHHHHHhhc
Q 004806 698 ALSQSGT-PRAKEKAQALLSYFRN 720 (729)
Q Consensus 698 ~Ll~sg~-~rvr~~A~~lL~~L~~ 720 (729)
.++..+. +...-.+.++|.+|..
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhccc
Confidence 9888765 6677777778877754
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.69 E-value=2.2e-17 Score=135.30 Aligned_cols=63 Identities=52% Similarity=0.892 Sum_probs=60.2
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++.++++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999988 46799999999999999999999999988
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=4.2e-16 Score=182.90 Aligned_cols=262 Identities=25% Similarity=0.293 Sum_probs=225.2
Q ss_pred HHH-HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC------------CHHHHHHHHHHHHHhhcC-CccHHHHHh
Q 004806 460 TQR-EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS------------ETKIQENAVTALLNLSIN-DNNKSAIAN 525 (729)
Q Consensus 460 vq~-~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~------------d~~v~e~Al~aL~nLs~~-~~~k~~I~~ 525 (729)
-|. .|+..|-.+++ +++.|..+.+.|++..+..||.-+ ...++..|..+|-||.+. ..||..+..
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 67778888888 679999999999999999988521 345889999999999875 567777765
Q ss_pred -cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-c-hhhhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhccc-CcH
Q 004806 526 -ANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D-NKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHE 600 (729)
Q Consensus 526 -~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e-~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~-~~e 600 (729)
.|++..||..|.+...++..-.+.+|.||++.. . .|..+-+.|-+..|+.. |+.......+..+.|||||+. ..+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 499999999999998999999999999999943 3 45666667999998876 566666788899999999988 679
Q ss_pred HHHHHHH-cCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHH
Q 004806 601 NKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 601 n~~~lv~-~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
|+..|.. .|++..||.+|. ....+++.+-++|.|++. +++.|+.+.+.+++..|+..|.+.+-.+.-++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 9999998 899999999994 235678999999999754 778899999999999999999999999999999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
.+||||...+++.++.+++.|+|+.|..|+.+.+..+.+-+...|++|-+++
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999888888888888887766
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.6e-14 Score=148.37 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=233.6
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCcc---
Q 004806 446 VRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNN--- 519 (729)
Q Consensus 446 V~~Lv~~L~--s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~--- 519 (729)
+..+++.|. .++.++-...+..++.-|..++.||..+.+.++.+++...|... ..++...+.+++..|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 445555554 55677788889999998888999999999999999999877654 335888889999999876654
Q ss_pred -------HHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCC----HHHHHH
Q 004806 520 -------KSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT----PRGKKD 587 (729)
Q Consensus 520 -------k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~----~~v~~~ 587 (729)
.+.|+..|++..|++.|..+ ++.+......+|..|+..++.+..|.+.|++..|+.++.+.+ ....+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 45677788999999999876 488888999999999999999999999999999999998743 335678
Q ss_pred HHHHHHhcccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccC--
Q 004806 588 AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG-- 661 (729)
Q Consensus 588 Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~-- 661 (729)
++..|..|+.++.++..+|+.|+.+.++.++ .+++-+++.++.++..||- .++.-..+++.|+-...++-|+..
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 8889999999999999999999999999988 4678888999999999998 777778888999988999999763
Q ss_pred CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 662 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
...++.+|++.+.|+...+..++..++.. +++.|+......++.....|..+|+-|..+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 56799999999999999998888877776 589999999999988888899999876443
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=1e-12 Score=137.02 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.+.++.|+.+|+ +.++.+|..|+..+.+.+. .+.++..|.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+++.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 467899999999 5689999999999999887 56899999999999999999999999999999999999999998888
Q ss_pred HHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 522 AIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
.|-. +++.+++.+.+. +.+++..++++|.||+..++++..+. +.++.++.+|..++..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 8743 588888766554 57899999999999999888877774 47999999999999999999999999999999
Q ss_pred HHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCC
Q 004806 600 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~ 638 (729)
.+...++.++++..++.|++ .+.++...++.++.||..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999994 4578889999999999763
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.53 E-value=3e-13 Score=154.62 Aligned_cols=276 Identities=22% Similarity=0.255 Sum_probs=220.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh--hHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~--nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
+.|+.||.+|.+.+.++|.+|+++|++|.+.+.. |+..|.+.++|+.|+.+|+. .|.++++....+|+||+.++..|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 4688999999999999999999999999998766 99999999999999999987 69999999999999999887666
Q ss_pred HHHHhcCCHHHHHHHhcCC--------------CHHHHHHHHHHHHHhcc-Ccchhhhhhcc-CcHHHHHHhhcC-----
Q 004806 521 SAIANANAIEPLIHVLQTG--------------SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN----- 579 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~--------------~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~~----- 579 (729)
..|+.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+.+++.
T Consensus 355 ~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 665543 445544433111 24567799999999998 78888888876 899999888862
Q ss_pred -CCHHHHHHHHHHHHhcc--------------------------------------------------------------
Q 004806 580 -GTPRGKKDAATALFNLS-------------------------------------------------------------- 596 (729)
Q Consensus 580 -~~~~v~~~Al~aL~nLs-------------------------------------------------------------- 596 (729)
.+....++|+.+|.||+
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 24445555555555554
Q ss_pred ----------------------------------cC-----cHHHHHH-HHcCcHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 004806 597 ----------------------------------IY-----HENKARI-VQAGAVKHLVDLMD-PAAGMVDKAVAVLANL 635 (729)
Q Consensus 597 ----------------------------------~~-----~en~~~l-v~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nL 635 (729)
.. ...+..+ .++.+.+.|++||+ .+..++..++++|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 21 1111222 45667788888884 6778899999999999
Q ss_pred hCCcchHHHHHhCCcHHHHHHHHccC------CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC-HHHH
Q 004806 636 ATIPDGRVAIGQENGIPVLVEVVELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT-PRAK 708 (729)
Q Consensus 636 a~~~e~r~~i~~~g~I~~Lv~lL~s~------s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~-~rvr 708 (729)
+.+...+..|. .++++.|+..|... +......++.+|+++...+..+...+++.+++++|+.|..+.. +++.
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999988887 67899999999652 3678888999999999999989999999999999999998864 7899
Q ss_pred HHHHHHHHHhhcC
Q 004806 709 EKAQALLSYFRNQ 721 (729)
Q Consensus 709 ~~A~~lL~~L~~~ 721 (729)
+.|..+|..|-.+
T Consensus 673 kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 673 KAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777554
No 18
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.1e-13 Score=136.30 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=122.2
Q ss_pred hHHHHHHHhhhcchhhH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHHHH-------
Q 004806 30 SLELCSQKIKHMEYEQT--SSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEIL-IEAVALEKLKENAEQ------- 99 (729)
Q Consensus 30 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~l~l~~~~~~~-~e~~~l~~~~~~~~~------- 99 (729)
++++|....+.++ |.| +..-...++++.-..+.+.....+.|+++.+....+-+ .+...+....+.+..
T Consensus 83 flg~~~l~s~~~~-eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~ 161 (284)
T KOG4642|consen 83 FLGQWLLQSKGYD-EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDREREL 161 (284)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHH
Confidence 5566666666665 444 33444478888888888999999999999987766554 232233322221111
Q ss_pred ---Hhh--hc-hH------------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccccccCceecCCCcc
Q 004806 100 ---AEK--AG-EA------------EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQT 161 (729)
Q Consensus 100 ---~~~--~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~t 161 (729)
.++ .. .. +.+..|.++..++.+ ...+.++|+.+||.|+++||+|||+.|+|.|
T Consensus 162 s~~~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e---------~rk~rEvpd~lcgkIt~el~~~pvi~psgIt 232 (284)
T KOG4642|consen 162 SEWQENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDE---------KRKKREVPDYLCGKITLELMREPVITPSGIT 232 (284)
T ss_pred HHHHHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHH---------HhccccccchhhhhhhHHhhcCCccCccccc
Confidence 000 00 00 112222222222222 1246779999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 162 YERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 162 y~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
|+|..|.+|+..-+..+|+||.+|+..+++||+.|+..|..|..+|+|..
T Consensus 233 y~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 233 YDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred hhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 99999999999877889999999999999999999999999999999863
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.2e-11 Score=128.71 Aligned_cols=267 Identities=15% Similarity=0.247 Sum_probs=223.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhh-cCCccHHHHHhcCCH
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLS-INDNNKSAIANANAI 529 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs-~~~~~k~~I~~~g~I 529 (729)
-.+++..+..+++..|..+....++ +.++.+...++.+|.. ++.++....+..+..-+ .++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4466777788899999988876554 5567888999999854 46777777777776655 468899999999999
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhh----------hhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhccc
Q 004806 530 EPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKI----------KIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 597 (729)
Q Consensus 530 ~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~----------~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~ 597 (729)
+.+...|. .+...+.....+++..|..+++.|. .|...|++..|++.|+-+ ++.+...++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 99997665 4556688888999999988777553 455568899999999876 78899999999999999
Q ss_pred CcHHHHHHHHcCcHHHHHHhcCC--C---HHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc--cCCHHHHHHHH
Q 004806 598 YHENKARIVQAGAVKHLVDLMDP--A---AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE--LGSARGKENAA 670 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL~~--~---~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~--s~s~~~ke~A~ 670 (729)
.++.+..+.+.|++..|+.++++ + ..+...++.+|..|+.+++.+..|++.|+.+.++.++. +.+|.+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999942 2 33567799999999999999999999999999999984 47899999999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC--HHHHHHHHHHHHHhhcCcC
Q 004806 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~--~rvr~~A~~lL~~L~~~~~ 723 (729)
.++.-||...|++...+++.|+-...++-|+..- ..+++.|.++++++..+.+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999888888887653 6799999999999976543
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.48 E-value=2.6e-13 Score=159.98 Aligned_cols=224 Identities=21% Similarity=0.249 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHHHHHhcCCHHHHHH
Q 004806 458 LDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIH 534 (729)
Q Consensus 458 ~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~~k~~I~~~g~I~~Lv~ 534 (729)
..+++.|..+|.+|++++..|+..+... |++..+|..|.+...+++.....+|.||++. .+.|..+.+.|-+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3467889999999999999999998875 9999999999998889988889999999985 455777888899999887
Q ss_pred H-hcCCCHHHHHHHHHHHHHhcc-Ccchhhhhhcc-CcHHHHHHhhcCC----CHHHHHHHHHHHHhccc----CcHHHH
Q 004806 535 V-LQTGSPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKA 603 (729)
Q Consensus 535 l-L~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~~en~~ 603 (729)
. |+..........+.+||||+. ..+||..|..- |++..||.+|... ...+.+.|-.+|.|++. ..+.|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 5 455555677788999999998 58899999875 9999999999864 45788889999999875 677888
Q ss_pred HHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 604 RIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+.+.+++..|+..|+ ....++.++|++||||.. +++.++.+++.|+|+.|..+|.+.+....+-++.+|.||..+.+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999995 567889999999999977 88999999999999999999999999999999999999998875
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.43 E-value=9.6e-12 Score=129.73 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=170.0
Q ss_pred HhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh
Q 004806 483 ANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
.+.+.++.|+.+|+. .|+.+++.|+.+|.|.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 456778999999985 6899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 562 IKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 562 ~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
..|- ..++.+++.+.+. +..++..++++|.||+..++....+. +.++.++.+| ..+..++..++.+|.||+.+
T Consensus 89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 8874 3577777765544 67899999999999998877766554 4789999998 46778889999999999999
Q ss_pred cchHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCC
Q 004806 639 PDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 680 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~ 680 (729)
+.....++...++..++.++... +.....+++....||..+-
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99989998889999999999774 6778889999999997653
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=8.7e-11 Score=134.81 Aligned_cols=277 Identities=16% Similarity=0.167 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.....+.|...|.++++.++..++..|+.++.++......+.+.+.++.++.+|.+++..+...|+.+|.+|+.++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 46788899999999999999999999999999887667777888999999999999999999999999999998887777
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.+...+.+..|..++...+..+|..+..++.+++.. ++....+...|+++.++..|.+.|.-++..|+.+|..|+..+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 788888899999999988888999999999999874 5566667778999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHhcC---CCH---H-HHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 601 NKARIVQAGAVKHLVDLMD---PAA---G-MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~---~~~---~-v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
+...+.+.|+++.|+.++. .++ . +.-..+...++++......-.-.-...+..|.+++.+.++..+..|..+|
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999982 222 1 22334567777777522211111123456677777889999999999999
Q ss_pred HHHhhCCHhhHHHH-HhC-CC----HHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 674 LQLCTNSSRFCSMV-LQE-GA----VPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 674 ~nL~~~~~~~~~~v-l~~-G~----v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..+|.... ....+ ... +. +..+.....++...+|..+..+|..+-
T Consensus 315 g~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 315 GQIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99997654 44444 333 23 444555556677889999999888874
No 23
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.5e-12 Score=138.06 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=98.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 004806 48 SLIKEAIRDQVDGVAPSSEILVK---VAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV 124 (729)
Q Consensus 48 ~~i~~~~~~~~~~~~~~~~~~~~---i~~~l~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (729)
..|++++.| ++.++.+.|.+ |..+.-|.++.++ .|+..+....|+.+..+..+|+|
T Consensus 789 ~FveaVA~D---~rsf~~~~F~rA~~I~~~k~L~s~~~I-E~l~~f~nr~E~~r~~ea~EeED----------------- 847 (929)
T COG5113 789 KFVEAVASD---KRSFDIDFFRRALRICENKYLISESQI-EELRSFINRLEKVRVIEAVEEED----------------- 847 (929)
T ss_pred HHHHHHHcc---cccccHHHHHHHHHHHhccccCCHHHH-HHHHHHHHHHHHHHHHHhhhhhh-----------------
Confidence 346666655 77899999985 4555556666666 44444444444433333223333
Q ss_pred HHhhhccCCCCCCCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 125 MIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 125 ~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
..+||++|.+|++..+|+|||++| +|.+.||+.|..|+..+ .++|+.|.||+.++.+||-+||+.|-.|
T Consensus 848 ---------~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f 917 (929)
T COG5113 848 ---------MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRF 917 (929)
T ss_pred ---------ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHH
Confidence 345999999999999999999997 68999999999999987 6799999999999999999999999999
Q ss_pred HHHc
Q 004806 204 CELN 207 (729)
Q Consensus 204 ~~~~ 207 (729)
....
T Consensus 918 ~k~k 921 (929)
T COG5113 918 YKCK 921 (929)
T ss_pred Hhcc
Confidence 6544
No 24
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.4e-11 Score=144.53 Aligned_cols=121 Identities=30% Similarity=0.423 Sum_probs=95.0
Q ss_pred CCCCCCHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 004806 59 DGVAPSSEILVKVAESL---SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPV 135 (729)
Q Consensus 59 ~~~~~~~~~~~~i~~~l---~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (729)
|+|.|+.+.|......+ +++...++ ++...|....++....+..+++++.|
T Consensus 813 D~RSys~~lF~~a~~~~~k~~l~~~~~I-e~~s~la~~~~~~~~~~~~eee~l~d------------------------- 866 (943)
T KOG2042|consen 813 DGRSYSEELFNHAISILRKRILKSSRQI-EEFSELAERVEATASIDAEEEEELGD------------------------- 866 (943)
T ss_pred cccccCHHHHhhhHHHHHHhhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 57889999998666655 33333343 55555555554443333333333433
Q ss_pred CCCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 136 PIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+|++|..||+..+|+|||++| +|++.||+.|++|+..+ .++|+||.||+.+++.||.+||..|+.|..++
T Consensus 867 -vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 867 -VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred -CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999 89999999999999986 67999999999999999999999999997765
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.15 E-value=6.8e-09 Score=119.25 Aligned_cols=272 Identities=15% Similarity=0.130 Sum_probs=212.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHhcC
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIANAN 527 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~-k~~I~~~g 527 (729)
++..|...+.+.-..++..|..+.... ..... ..+..+.|...|.++++.++..++..|.++..+... ...+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 778888777666667777787776632 22222 457889999999999999999999999999876655 44456679
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHH
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIV 606 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv 606 (729)
.++.++..|..++.++...|+.+|.+|+.....-..+...+.+..|..++...+..++..+..++.+++. .++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999988777778888889999999999888888899999999987 566677777
Q ss_pred HcCcHHHHHHhcCC-CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC--CH---H-HHHHHHHHHHHHhhC
Q 004806 607 QAGAVKHLVDLMDP-AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SA---R-GKENAAAALLQLCTN 679 (729)
Q Consensus 607 ~~G~V~~Lv~LL~~-~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~---~-~ke~A~~aL~nL~~~ 679 (729)
+.|+++.++..++. |.-++..++.+|..|+..+.+...+.+.|+++.|+.++... ++ . ..-..+....+++..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 89999999999854 44566789999999999999999999999999999999653 23 1 112223455666665
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcCc
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 724 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~~ 724 (729)
.+..... .-...+..|..++.++++..+..|.+.|..+....+|
T Consensus 280 ~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 280 SPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred ChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 4321111 1123566677778888899999999999888765444
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=6.8e-10 Score=101.12 Aligned_cols=116 Identities=31% Similarity=0.421 Sum_probs=106.2
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-c
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D 559 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e 559 (729)
+.+.|+++.|+.+|.+.++.+++.|+.+|.+++.+ +.....+.+.|+++.|+.+|.++++.++..++++|.+|+... .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999887 778888888999999999999999999999999999999865 4
Q ss_pred hhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 560 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 560 ~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
....+...|+++.|+.++...+..+++.|+++|.||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 56667778999999999999999999999999999863
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.13 E-value=3.2e-11 Score=90.45 Aligned_cols=39 Identities=31% Similarity=0.777 Sum_probs=31.5
Q ss_pred ccCccccccCceecCCCccccHHHHHHHHhcCC---CCCCCC
Q 004806 143 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGL---FVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~---~~cP~t 181 (729)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 359986
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=9e-09 Score=111.58 Aligned_cols=275 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..|..||+.|.-.+.+........|..|+.- .+|+..+.+.|.|..|+.++-..+++++...+..|.||+.+...+..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 56888999999988888888888999999885 47999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHH---------------
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKK--------------- 586 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~--------------- 586 (729)
++..|.+|.|+.+|.+... ..-|+..|..||.+++.|..+.-..+|+.+.+.+-.+ +.++-.
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999976542 2335556666666666666555555555555443322 222222
Q ss_pred ----------------------------------------------------------------HHHHHHHhcccCcHHH
Q 004806 587 ----------------------------------------------------------------DAATALFNLSIYHENK 602 (729)
Q Consensus 587 ----------------------------------------------------------------~Al~aL~nLs~~~en~ 602 (729)
.++.+|.||...+-..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 2333333333322222
Q ss_pred HHHH-HcCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 004806 603 ARIV-QAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 676 (729)
Q Consensus 603 ~~lv-~~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL 676 (729)
..++ ...+||.+-..|. ...+++-..+-.++.++....+...++.++.|+.|+++|+. .+++..-.-+.+..++
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 2222 2344444444442 11223333334444444444555566678899999999976 4556666677777888
Q ss_pred hhCCHhhHHHHHhCC-CHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 677 CTNSSRFCSMVLQEG-AVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G-~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
..+. ..+..++++. .-..|+.|+...+..+|+.+-.+|-++..+
T Consensus 620 l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 620 LKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 8773 3555555554 455688999999999998887777777654
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.10 E-value=4.2e-11 Score=117.60 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=53.5
Q ss_pred CCCCCCcccccCccccccCceecCCCccccHHHHHHHHhc---------------CCCCCCCCCccCCCCCCcccH
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL---------------GLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~---------------~~~~cP~t~~~l~~~~l~pN~ 194 (729)
.++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456788999999999999999999999999999999852 234699999999999999975
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.10 E-value=7.9e-09 Score=110.99 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=212.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC----CC---HHHHHHHHHHHHHhhc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----SE---TKIQENAVTALLNLSI 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s----~d---~~v~e~Al~aL~nLs~ 515 (729)
.+.+..|.+...+.+.++..+..++|.++|+.+.++|..+.+.|+-..++..|+. ++ .+....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4567777777778889999999999999999999999999999997777777753 22 3555666777888765
Q ss_pred C-CccHHHHHhcCCHHHHHHHhcCC----------------------------------------------CHHHHHHHH
Q 004806 516 N-DNNKSAIANANAIEPLIHVLQTG----------------------------------------------SPEARENAA 548 (729)
Q Consensus 516 ~-~~~k~~I~~~g~I~~Lv~lL~s~----------------------------------------------~~e~r~~Aa 548 (729)
+ +..+..+++.|+++.|..++.-+ .++..+...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 4 55677888888888766554211 112333444
Q ss_pred HHHHHhccCcchhhhhhccCcHHHHHHhhcCC-C-------HHHHHHHHHHHHhcccCcHHHHHHHHcC-cHHHHHHhcC
Q 004806 549 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-T-------PRGKKDAATALFNLSIYHENKARIVQAG-AVKHLVDLMD 619 (729)
Q Consensus 549 ~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~-------~~v~~~Al~aL~nLs~~~en~~~lv~~G-~V~~Lv~LL~ 619 (729)
.+|...+.++..+..+.+.|.+..++++++.- + ....+.++....-|...++.-+++...+ .++.++..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 56666667777788888889999999988762 1 1223344444444555566666666666 7888888884
Q ss_pred -CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-----CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCH
Q 004806 620 -PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-----GSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 693 (729)
Q Consensus 620 -~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-----~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v 693 (729)
.+..+...+.-+++|++..++....+++.+.+..|+++|.. ++-+.+..++.+|.|+.---+ ++..++..|++
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccchH
Confidence 56677778888999999999999999999999999999843 577899999999999987654 77899999999
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 694 PPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 694 ~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+.++..++...|++.-+-...|++++..
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 9999999999999888888888877653
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.09 E-value=3e-09 Score=96.89 Aligned_cols=116 Identities=28% Similarity=0.363 Sum_probs=107.4
Q ss_pred HHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 604 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+++.|+++.|+++| +.+..++..++.+|++++.. ++.+..+.+.++++.++.+|...++.++..|+++|++|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 56678999999999999996 7888888999999999999999999999999999999999988
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
.....+.+.|+++.|..++..++.++++.|.++|..|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888899999999999999999999999999999874
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.08 E-value=2.2e-08 Score=111.23 Aligned_cols=273 Identities=15% Similarity=0.105 Sum_probs=204.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
...++.+|..++..++..|+..|..+...+..+.......-.+..|...|.+. +...+..|+.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566678888888999999999988765443211111111334555666553 47778888999999999999999999
Q ss_pred hcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCc--
Q 004806 525 NANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 599 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~-- 599 (729)
+.++++.|+.+|+.. ...++++++-++|-|+..++....+...+.|+.|+++++.. ..++.+.++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999763 46899999999999999877766666679999999999875 6789999999999998732
Q ss_pred -----HHHHHHHHcCcHHHHHHhcC---CCHHHHHHHH-------HHHHHHhCCcch-----------------------
Q 004806 600 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDKAV-------AVLANLATIPDG----------------------- 641 (729)
Q Consensus 600 -----en~~~lv~~G~V~~Lv~LL~---~~~~v~e~Al-------~~L~nLa~~~e~----------------------- 641 (729)
.....++..|+.+.+-.|.. .+.++.+..- ..+..+++.++.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24456788888776666652 4455443222 222333332222
Q ss_pred -HHHHHhCC--cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 642 -RVAIGQEN--GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 642 -r~~i~~~g--~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
...+-+.+ .+..|+++|. +.++.....||.=|..++++.|..+..+-+.|+=..+..++...++++|..|..++..
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22333333 3788999994 5678888889999999999999888888899999999999999999999999998876
Q ss_pred h
Q 004806 718 F 718 (729)
Q Consensus 718 L 718 (729)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.2e-08 Score=113.52 Aligned_cols=256 Identities=18% Similarity=0.170 Sum_probs=203.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhc-CCc
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSI-NDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~-~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~-~~~ 518 (729)
..-+++|++-|... ++..|.+|+.+|. .|...+++.-.-+.-.-+||.|+.+|+++ +.+++..|+++|.+|+. -+.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 45789999999866 8889999999998 55666655555555557899999999885 79999999999999975 477
Q ss_pred cHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 519 NKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
....+++.++||.|+.-|. -...++-+.++.+|..|+.. .-..|.+.|++...+.+|.--+..+++.|+.+..|+|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788889999999987655 45689999999999999863 34567788999999999998889999999999999987
Q ss_pred --CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccC----CHHHH
Q 004806 598 --YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG----SARGK 666 (729)
Q Consensus 598 --~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~----s~~~k 666 (729)
.++.-..+++ ++|.|..+|. .+...++.++-++..++. .++--+.++..+.|....++|.-. +....
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3343343443 7999999994 566777887777777765 334457788889999999988543 33455
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC
Q 004806 667 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 667 e~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
...+..|..+|.+++.....+.+.++...|..+++.
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 667778888899988888888889999999998875
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.5e-10 Score=126.54 Aligned_cols=68 Identities=16% Similarity=0.388 Sum_probs=63.0
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
+...|.||||+++|.+||+++|||+||+.||..|+... ..||.|+.++....+.+|+.|.++|+.|..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 55789999999999999999999999999999999875 469999999988899999999999999965
No 35
>PRK09687 putative lyase; Provisional
Probab=99.04 E-value=2.3e-08 Score=106.29 Aligned_cols=223 Identities=18% Similarity=0.101 Sum_probs=151.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~L-L~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
..+..+.+++++.++.++..|++.|..|..... . ..-+++.|..+ ++++++.|+..|+.+|+++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 455666677777777778888877777654211 0 12356667666 56667788888888887774322110
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
...++..+...+.+.+..+|..++.+|..+ ....+++.|+.+|.+.+..++..|+.+|..+....+
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-- 191 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-- 191 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--
Confidence 112345566667777778888888777644 234578888888888888888888888888733211
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+++.|+.+| +.+..++..|+..|+.+-. ..+++.|++.|..++ ++..|+.+|..+...
T Consensus 192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-- 251 (280)
T PRK09687 192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-- 251 (280)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--
Confidence 3566777777 5667778888888876432 246888888888765 455677777765542
Q ss_pred hhHHHHHhCCCHHHHHHhhh-CCCHHHHHHHHHHHHH
Q 004806 682 RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSY 717 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~-sg~~rvr~~A~~lL~~ 717 (729)
.+++.|..++. ..+++++.+|.+.|+-
T Consensus 252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 26899999997 7789999999998863
No 36
>PRK09687 putative lyase; Provisional
Probab=99.02 E-value=2.6e-08 Score=106.00 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=171.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
-.+..|++.|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..|+++|..|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 457889999999999999999999987643 34678889999999999999999999998543221
Q ss_pred HhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 524 ANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 524 ~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
....++.|..+ +++.++.++..|+.+|.++....... ...++..+...+.+.+..++..|+.+|..+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence 12356777766 67788999999999999985422111 1235667778888889999999999998763
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
...+++.|+.+| +++..++..|+.+|+.+.... ..+++.|+..|...+..++..|+++|..+-. +
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~ 222 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K 222 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h
Confidence 233788999999 577789999999999984321 2457889999999999999999999987432 2
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.+++.|+..++.+. ++..|...|..|
T Consensus 223 ---------~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 223 ---------RVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred ---------hHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 36888888888876 344555555544
No 37
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1e-07 Score=103.52 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=197.3
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSP 541 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~ 541 (729)
+.|+..|.++|.+ ......++....|..|+..|...+..+.-..+..|..|++-.+||..+.+.|.+..|+++....++
T Consensus 281 rva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 281 RVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence 4577788899884 455566777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-C-
Q 004806 542 EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D- 619 (729)
Q Consensus 542 e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~- 619 (729)
+++...+..|+|||.+...+..++..|.+|.|+.+|.+.... ..|+..|+.++.++..+.-+..-.+|+.+++.+ .
T Consensus 360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999886532 347789999999999999999999999999865 3
Q ss_pred CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHH
Q 004806 620 PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 698 (729)
Q Consensus 620 ~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~ 698 (729)
.+..+....++.--|||.+..+.+.+++..++..|++.- ...++.. ..++.|+..+.+..+..+++ .|..|..
T Consensus 438 ~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~ 511 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAG 511 (791)
T ss_pred CCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHH
Confidence 333333334444468999888888888877888888764 4444433 45778888887655556655 3667777
Q ss_pred hhhCCCH-HHHHHHHHHHHHhh
Q 004806 699 LSQSGTP-RAKEKAQALLSYFR 719 (729)
Q Consensus 699 Ll~sg~~-rvr~~A~~lL~~L~ 719 (729)
++...++ .-.-.+.+.|.+|.
T Consensus 512 i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcc
Confidence 7776653 33344555555554
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=7.1e-08 Score=104.37 Aligned_cols=230 Identities=17% Similarity=0.176 Sum_probs=162.5
Q ss_pred CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCC-ccHHHHHh------cCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 486 GAINILVDMLHS--SETKIQENAVTALLNLSIND-NNKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 486 GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~-~~k~~I~~------~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
+.+..++.+|+. .+.++....+..+..|..++ .....+.. .....++++++..++.-++..|+..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 345666666654 58889999999999986654 34444433 1368889999999999999999999999987
Q ss_pred CcchhhhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc------CCC--HHH
Q 004806 557 IEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------DPA--AGM 624 (729)
Q Consensus 557 ~~e~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL------~~~--~~v 624 (729)
....+..-...+.++.++++|.+. +...+..|+.+|.+|...++.|..+++.|+++.|+.++ ... ..+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 655554443366778888887753 44567899999999999999999999999999999999 222 234
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhC
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~s 702 (729)
.=.++-++|.|+..++....+.+.+.|+.|+++++. ..+++.+-++++|.||+...++ ....++..|+++.|-.|...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 567999999999999999999999999999999975 5789999999999999988765 56666676666555555544
Q ss_pred C--CHHHHHHHHHHH
Q 004806 703 G--TPRAKEKAQALL 715 (729)
Q Consensus 703 g--~~rvr~~A~~lL 715 (729)
. ++++.+--..+-
T Consensus 295 k~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 295 KWSDEDLTEDLEFLK 309 (312)
T ss_dssp --SSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 3 466666544443
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.87 E-value=8.9e-08 Score=103.59 Aligned_cols=219 Identities=18% Similarity=0.165 Sum_probs=162.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~------GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.|++.+ +.+.++....+..|..+...++.....+... .....++.++..+|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 344444 4678889999999999999887666666552 357888889999999999999999999976544333
Q ss_pred HHHhcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh-----cC--CCHHHHHHHHH
Q 004806 522 AIANANAIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-----GN--GTPRGKKDAAT 590 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s----~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL-----~~--~~~~v~~~Al~ 590 (729)
.....+.++.++..|.+ .+.+.+..++.+|.+|...+.+|..+.+.++++.|+.+| .. .+.+++..++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33335667778877765 335567899999999999999999999999999999999 22 25788899999
Q ss_pred HHHhcccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcc--hHHHHHhCCcHHHHHHHHcc--CCHH
Q 004806 591 ALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVEL--GSAR 664 (729)
Q Consensus 591 aL~nLs~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e--~r~~i~~~g~I~~Lv~lL~s--~s~~ 664 (729)
+++-|+.+++....+...+.|+.|++++ .....++.-++++|.||..... ....++..++++.+-.+... .+++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999 3678899999999999999666 67777777776666665544 4555
Q ss_pred HHH
Q 004806 665 GKE 667 (729)
Q Consensus 665 ~ke 667 (729)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.85 E-value=1.5e-07 Score=101.37 Aligned_cols=275 Identities=15% Similarity=0.122 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CC-------HHHHHHHHHHHHHh
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SE-------TKIQENAVTALLNL 513 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d-------~~v~e~Al~aL~nL 513 (729)
...+-.|++.|.+. +++........|...+. +...+-.+++.|.+.-++.+++. .+ ......++....-|
T Consensus 222 ~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vll 300 (604)
T KOG4500|consen 222 CSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLL 300 (604)
T ss_pred chHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhh
Confidence 34566677777643 33444444455555544 66788889999999999999865 22 11223334443344
Q ss_pred hcCCccHHHHHhcC-CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-----CCHHHHHH
Q 004806 514 SINDNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----GTPRGKKD 587 (729)
Q Consensus 514 s~~~~~k~~I~~~g-~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-----~~~~v~~~ 587 (729)
...++.-..+...+ ++.-++..+.+.+......++-+|.|++..++++..+++.+.+..|+++|.. ++.+.+.+
T Consensus 301 ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 301 LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence 45566655565555 8889999999999999999999999999999999999999999999999863 57889999
Q ss_pred HHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc-hHHHHHhC-CcHHHHHHHHccCCH-
Q 004806 588 AATALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPD-GRVAIGQE-NGIPVLVEVVELGSA- 663 (729)
Q Consensus 588 Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~-g~I~~Lv~lL~s~s~- 663 (729)
++.||+||.....|+.++..+|+++.++..++ ..+.++.+-++.|..+-...+ ...++.+. ..+..|++.-++.+-
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 99999999999999999999999999999985 567788888898888876554 33444433 357888888877654
Q ss_pred HHHHHHHHHHHHHhhCC--HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 664 RGKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 664 ~~ke~A~~aL~nL~~~~--~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.+.-...+.|..+..++ .+....+.+.|+|..++.++...+-..+..|.-.|-.+
T Consensus 461 Gv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 461 GVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 46677788888888874 34556677889999999988887766666655544433
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.76 E-value=5.3e-09 Score=77.25 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=33.3
Q ss_pred ccCccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 004806 143 CPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t 181 (729)
||||.+.+.|| |+++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5789987
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=1.4e-06 Score=107.08 Aligned_cols=225 Identities=23% Similarity=0.217 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...+..|++.|++.++.+++.|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 3467899999999999999999999987642 357899999999999999999999998774211
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC----
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---- 598 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~---- 598 (729)
...+.|...|.+.++.+|..|+.+|..+.. +....|+.+|.+.++.++..|+.+|..+-..
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 122455666666667777776666665421 1123445555555555555555555543110
Q ss_pred -------cHHHHHHH---------HcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC
Q 004806 599 -------HENKARIV---------QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 661 (729)
Q Consensus 599 -------~en~~~lv---------~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~ 661 (729)
.+.|...+ ....++.|..++ +++..++..|+..|..+.... ..+..|+..|...
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~ 819 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRAS 819 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCC
Confidence 00111000 011245666666 455566666666666653321 1234567777777
Q ss_pred CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 662 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
++.++..|+.+|..+... ..++.|+.++.+.+..||+.|...|..+
T Consensus 820 d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 820 AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 778888888888765421 2579999999999999999999999876
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.71 E-value=1.9e-06 Score=105.90 Aligned_cols=228 Identities=21% Similarity=0.185 Sum_probs=154.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-----
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----- 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~----- 517 (729)
...++.|++.|++.+..++..|+..|..+.... ...+.|...|.++++.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 557889999999999999999999888774311 12245556666666666666666665442110
Q ss_pred ------c--cHHH----HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHH
Q 004806 518 ------N--NKSA----IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 585 (729)
Q Consensus 518 ------~--~k~~----I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~ 585 (729)
+ .|.. +...+..+.|+.+|.+.++++|..++.+|..+... ....++.|..++++.++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence 0 0000 00112234455556666666666666666655321 11346788888888888888
Q ss_pred HHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHH
Q 004806 586 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 664 (729)
Q Consensus 586 ~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 664 (729)
..|+.+|.++..... ++..|+..| +++..++..|+.+|..+.. ...++.|+.+|...+..
T Consensus 793 ~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 793 AAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHH
Confidence 888888888743211 234577777 5677888889999987642 23579999999999999
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 665 ~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
++..|+.+|..+ ..++ ...+.|...+.+.++.||+.|...|..
T Consensus 854 VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999886 2222 247788889999999999999998863
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.2e-06 Score=96.93 Aligned_cols=267 Identities=18% Similarity=0.243 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCc-
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDN- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~- 518 (729)
...|+.|++.+.+. -.+.++.|++.|..+++ ..|..++ +-|++.|+..|..+ |+++...++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57899999998844 56789999999999998 5666655 45678888888764 89999999999999966542
Q ss_pred ------cH----------HH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc--Ccchhhhhhc-cCcHHHHHHhhc
Q 004806 519 ------NK----------SA-IANANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR-SGAIGPLVDLLG 578 (729)
Q Consensus 519 ------~k----------~~-I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~-~g~I~~Lv~LL~ 578 (729)
.+ .. |-..+.|..|+..+...+..+|.++...|.+|-. ..+.+..+.. .-+|..|+++|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 11 2234889999999999999999999999999866 3556666655 488999999999
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcCC----CH-HHHHHHHHHHHHHhC-CcchHHHHHhCCcH
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMDP----AA-GMVDKAVAVLANLAT-IPDGRVAIGQENGI 651 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~~----~~-~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I 651 (729)
+....++-.|+..|..|+....+.+++|. .+++..|+.+++. +. -+++.|+.+|-||-. +..++..+.+.+.|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998888888876 8899999999942 22 467999999999998 55566777777789
Q ss_pred HHHHHHHcc---CCHH----------HHHHHHHHHHHHhhCC--H----hhHHHHHhCCCHHHHHHhhhCCC-H-HHHHH
Q 004806 652 PVLVEVVEL---GSAR----------GKENAAAALLQLCTNS--S----RFCSMVLQEGAVPPLVALSQSGT-P-RAKEK 710 (729)
Q Consensus 652 ~~Lv~lL~s---~s~~----------~ke~A~~aL~nL~~~~--~----~~~~~vl~~G~v~~Lv~Ll~sg~-~-rvr~~ 710 (729)
|.|.++|.. ++.+ ....|..++..+..-+ . .++..+.+.+++..|+.++.+.. | .++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988742 3321 1233444555554422 1 23356677899999999988764 3 44444
Q ss_pred HHH
Q 004806 711 AQA 713 (729)
Q Consensus 711 A~~ 713 (729)
+.-
T Consensus 337 sii 339 (970)
T KOG0946|consen 337 SII 339 (970)
T ss_pred HHH
Confidence 333
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.69 E-value=7.2e-09 Score=82.88 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=31.3
Q ss_pred CcccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCC
Q 004806 139 SDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTR 182 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~ 182 (729)
-.|.|||++..|+|||+- .|||+|||.+|.+|+..+ ...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 358999999999999985 899999999999999543 34599965
No 46
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.59 E-value=4.9e-07 Score=83.67 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
-+.+..||..+. ..+.+.+.+.+.-|.++++ ++-|-..+.+.++++.++..|...|..+.+.++..|+|++.+..|+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 478899999887 5688999999999999999 57899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIG 571 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~ 571 (729)
.|.++++++.++..|.++...+.-.|+.+|..|+.... .+..+....++.
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR 144 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence 99999999999999999998899899999999987433 345554433333
No 47
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.59 E-value=2e-08 Score=104.25 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=59.6
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
+-++|-||.+.|+-||++|||||||--||.+|+... ..||.|..+++...|.-|+.|-.+|+.|
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHH
Confidence 347899999999999999999999999999999986 4599999999999999999999999887
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.57 E-value=2.9e-08 Score=74.55 Aligned_cols=36 Identities=25% Similarity=0.728 Sum_probs=23.4
Q ss_pred ccCccccccC----ceecCCCccccHHHHHHHHhcC---CCCCC
Q 004806 143 CPLSLELMTD----PVIVASGQTYERAFIKKWIDLG---LFVCP 179 (729)
Q Consensus 143 CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~---~~~cP 179 (729)
||||.+ |.+ ||+++|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 23477
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.56 E-value=6.6e-06 Score=91.68 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=169.3
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccHH
Q 004806 445 QVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 445 ~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.+..|...|++. +...+.-|+.+|..|.+. +..|..+.+.++++.|+.+|+.. +.+++.+++-+|+-|+.+++...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 445666666643 456677788999998885 57898888899999999999763 56899999999999999877666
Q ss_pred HHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhccCc-------chhhhhhccCcHHHHHHhhcCC---CHHHHHHHH-
Q 004806 522 AIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIE-------DNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAA- 589 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~-------e~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al- 589 (729)
.....+.|+.|+.+++... ..+..-++++|.||.... .....++..|+++ ++..|... ++++..+--
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~ 301 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKF 301 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHH
Confidence 6667799999999998765 668888999999998732 1233455556555 55555432 444432211
Q ss_pred ------HHHHhcccC------------------------cHHHHHHHHcC--cHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 004806 590 ------TALFNLSIY------------------------HENKARIVQAG--AVKHLVDLMD--PAAGMVDKAVAVLANL 635 (729)
Q Consensus 590 ------~aL~nLs~~------------------------~en~~~lv~~G--~V~~Lv~LL~--~~~~v~e~Al~~L~nL 635 (729)
.-+..++++ .+|..++-+.+ ++..|+++|+ .++.+..-||.=++.+
T Consensus 302 L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~ 381 (429)
T cd00256 302 LTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEY 381 (429)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHH
Confidence 122233321 24555665533 6788888883 3455556677778888
Q ss_pred hC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 636 AT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 636 a~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+. .+.||..+-+.|+=..+++++.+.++.++.+|..++..|..+
T Consensus 382 vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 382 VRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 87 788999988899999999999999999999999999877543
No 50
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.55 E-value=5.9e-08 Score=72.32 Aligned_cols=39 Identities=36% Similarity=0.941 Sum_probs=35.8
Q ss_pred ccCccccccCce-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 004806 143 CPLSLELMTDPV-IVASGQTYERAFIKKWID-LGLFVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~-~~~~~cP~t 181 (729)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 555669987
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.54 E-value=8.6e-06 Score=88.28 Aligned_cols=271 Identities=15% Similarity=0.135 Sum_probs=198.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC-cHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 447 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG-AINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 447 ~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~G-aI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
...+.+|...+..+...+.+.|..++.-.... ....+.+ ....|...+.+ .+.+....|+.+|-.+...++.|..+.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 45566777777777776778887777643211 1111111 12223334444 567777888999988988899999999
Q ss_pred hcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCc--
Q 004806 525 NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 599 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s--~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~-- 599 (729)
..+++..++..|.+ .+..++++..-++|-|+.++.....+...+.|+.|.+++++. ...+.+.++.++.|+....
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 99999999998843 358899999999999999888887776669999999999976 6789999999999998755
Q ss_pred -----HHHHHHHHcCcHHHHHHhcC---CCHHHHHH-------HHHHHHHHhCCcchHH---------------------
Q 004806 600 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDK-------AVAVLANLATIPDGRV--------------------- 643 (729)
Q Consensus 600 -----en~~~lv~~G~V~~Lv~LL~---~~~~v~e~-------Al~~L~nLa~~~e~r~--------------------- 643 (729)
+....++..++.+.+-.|.. ++.++++. .-.....|++.++...
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 45566777777776655552 44444432 2223333444433322
Q ss_pred ---HHHhCC--cHHHHHHHHccC-CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 644 ---AIGQEN--GIPVLVEVVELG-SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 644 ---~i~~~g--~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
.+-+.+ .+..|+++|+.. ++...-.|+.=+....++.|+.+..+.+-|+=+.+.+|+...+++||-.|..++..
T Consensus 356 Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~ 435 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQK 435 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 222222 478899999875 58888889999999999999999999999999999999999999999999887765
Q ss_pred h
Q 004806 718 F 718 (729)
Q Consensus 718 L 718 (729)
|
T Consensus 436 l 436 (442)
T KOG2759|consen 436 L 436 (442)
T ss_pred H
Confidence 4
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-06 Score=98.00 Aligned_cols=214 Identities=17% Similarity=0.156 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCcc
Q 004806 442 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNN 519 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~ 519 (729)
++.+|+.|+.+|+. .+.+++..|+++|..|+..-+.....+++.++||.|+.-| .-...++.|+++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 47899999999994 4789999999999999998888889999999999998755 4467889999999999998543
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
-.+|..+|+|-..+..|.--+..++..|+++..|+|.. .+.-..+ ..++|.|..+|...+.+..+.++.++..+..
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 35788999999999999888889999999999999873 2222222 4789999999999999999988888888764
Q ss_pred ----CcHHHHHHHHcCcHHHHHHhcCC-----CHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHc
Q 004806 598 ----YHENKARIVQAGAVKHLVDLMDP-----AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 659 (729)
Q Consensus 598 ----~~en~~~lv~~G~V~~Lv~LL~~-----~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~ 659 (729)
.++--+.+...|+|.....|+.. +..+-...+..|..+|+ ++.....+.+.++...|..+|.
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 34445778889999999999842 23445567778888887 5788888888888888888875
No 53
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.3e-08 Score=101.70 Aligned_cols=71 Identities=25% Similarity=0.573 Sum_probs=61.7
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
..+++.||||++.|++|++++|||+||+.||..+|. ....||.|+. . ...+.+|..+.++++.+...+...
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCcc
Confidence 457899999999999999999999999999999999 5567999996 2 228889999999999998876543
No 54
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.50 E-value=2e-07 Score=95.75 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=41.7
Q ss_pred CCCcccccCccccccCc--------eecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 137 IPSDFCCPLSLELMTDP--------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP--------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
..++..||||++.+.+| |+.+|||+||+.||.+|+... .+||+||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-CCCCCCCCEee
Confidence 45678999999987764 567899999999999999864 68999999875
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.1e-06 Score=87.80 Aligned_cols=181 Identities=22% Similarity=0.191 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHh
Q 004806 539 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 617 (729)
Q Consensus 539 ~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~L 617 (729)
.+.+-++-|..-|..++.+-++...+...|++..|+.++++.+..++..|+++|...+. ++.....+.+.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35777888888888888888888899999999999999999999999999999999887 66778889999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 618 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 618 L~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
|. .+..++.+|+.++..|-. ++.+...+...+|...|...+.+ .+...+..|+..+..|..........+-..|.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 94 456677899999999988 77889999999999999999988 67889999999999999887766676667788
Q ss_pred HHHHHHhhhCCCHHHHHHHHH-HHHHhh
Q 004806 693 VPPLVALSQSGTPRAKEKAQA-LLSYFR 719 (729)
Q Consensus 693 v~~Lv~Ll~sg~~rvr~~A~~-lL~~L~ 719 (729)
...+..+..+....+.+.|.. +|..+.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 888888888888888877766 444443
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.5e-05 Score=85.28 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 533 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv 533 (729)
+.+.+.+..|+..|..++. +.+|-.-+...|+...|+..|++.+..+++.|+++|...+.+ +..+..+++.|++..|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4467778889999999987 568999999999999999999999999999999999999765 78899999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHhcccC-cHHHHHHHHc
Q 004806 534 HVLQTGS-PEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGN--GTPRGKKDAATALFNLSIY-HENKARIVQA 608 (729)
Q Consensus 534 ~lL~s~~-~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~--~~~~v~~~Al~aL~nLs~~-~en~~~lv~~ 608 (729)
..|.+.+ ..++..|+.++++|-.+ ......+...++...|.++|++ .+.+.++.++..+..|... ......+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9998655 66889999999999885 4455666667889999999998 4788899999999998773 3344444456
Q ss_pred CcHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 004806 609 GAVKHLVDLMD-PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 609 G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~ 637 (729)
|....++.+.. -+..+.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 66666666653 344555566555444433
No 57
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.48 E-value=3.7e-08 Score=79.10 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=33.9
Q ss_pred cccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
-++|++|.++|++||. ..|.|+||+.||.+.+.. .||+|+.|-...++.-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3789999999999996 579999999999886654 399999999999999999998886
No 58
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7e-08 Score=96.64 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=50.6
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCccCCCCCCcccH
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~~l~~~~l~pN~ 194 (729)
..|-|-||+++-+|||++.|||-||=.||.+|+.... ..||+|+..++.+.++|=+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3799999999999999999999999999999998533 3499999999999999965
No 59
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.48 E-value=1.1e-07 Score=74.20 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=40.6
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+++.|+||++-+.+++++||||. ||..|+.+|+.. ...||+||++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999995 467999999875
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.47 E-value=1.3e-05 Score=92.63 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
--.+..+.+.|.++++.++..|++.|.+++. ++-.. ..++.+..+|.++++.|+..|+.++..+... ++
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--- 147 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--- 147 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---
Confidence 3477888899999999999999999999874 22222 2578889999999999999999999998643 22
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh-ccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL-S~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.+... .++.+..+|.+.++.++..|+.++..+ ...+... . .-...+..|..++...++-++...+.+|..++....
T Consensus 148 ~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 148 LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 12222 588999999999999999999999999 2111111 1 113455666666678889999999999999887443
Q ss_pred HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 601 NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
....- ...++.+..++. .+..++-.++.++..+..... .-..+++.|+.++.+.++.++..|+..|..++..
T Consensus 225 ~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 225 EDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred hhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 32211 456666777763 456677778888887776554 2334678888888888888888888888888877
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+ ..+. .....+..+..+.+..+|..|..+|..+..
T Consensus 298 ~~---~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 298 NP---PAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp CH---HHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred cc---hhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 62 2222 222223333336667788888887776654
No 61
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.2e-05 Score=79.36 Aligned_cols=270 Identities=17% Similarity=0.180 Sum_probs=186.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..-.|++++.+.++.++..|...+..|+.. ..+..... .-.++.|..++...++ .+.|+.+|.|++.++..+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 456789999999999999999999988875 34444333 3568889999987666 688999999999998888777
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-------cCcHHHHHHhhcCC-CHHH-HHHHHHHHHh
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-------SGAIGPLVDLLGNG-TPRG-KKDAATALFN 594 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-------~g~I~~Lv~LL~~~-~~~v-~~~Al~aL~n 594 (729)
... .+..++..+.......-...+.+|.||+..+.....+.. .|.+......+..+ +... ...-+-.+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 777 788888888777666777788999999997765444321 35555555555544 3222 3345568889
Q ss_pred cccCcHHHHHHHHcCcHHH--HHHhcCCCHHHH-HHHHHHHHHHhCCcchHHHHHhCC--cHHHHH--------------
Q 004806 595 LSIYHENKARIVQAGAVKH--LVDLMDPAAGMV-DKAVAVLANLATIPDGRVAIGQEN--GIPVLV-------------- 655 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~--Lv~LL~~~~~v~-e~Al~~L~nLa~~~e~r~~i~~~g--~I~~Lv-------------- 655 (729)
|+....+|..+.....++. |+.+-..+..++ ...+++|.|.|........++..+ .++.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999999988887663322 222223334444 457889999998777666665532 233332
Q ss_pred -------HHHc-----cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhc
Q 004806 656 -------EVVE-----LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 656 -------~lL~-----s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~ 720 (729)
++|- ..++.++..-+.+|..||.... .|+.+...|+.+.|-.+-... ++.+++++-.+..++-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2221 2466788888999999998765 566666666655555554443 47888888777777765
No 62
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.5e-07 Score=90.36 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=45.1
Q ss_pred cccccCccccccC--ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 140 DFCCPLSLELMTD--PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 140 ~f~CpI~~~lm~d--PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
-|.||||++-+.. ||.+.|||.||+.||+..++.+ .+||.|++.++++++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 3899999988865 5567899999999999999986 56999999999888765
No 63
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.32 E-value=3.1e-07 Score=93.74 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=58.7
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
-++|-||.+.++-||+++||||||.-||.+|+... ..||+|+.+....-|.-+..++..++.|..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 46899999999999999999999999999999986 559999999988888888888888888743
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.30 E-value=3.1e-05 Score=89.41 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..++.+.+.+.++++.+|..|+.++..+.+.+++. +... .++.|..+|.+.++.++..|+.+|..+..++....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~- 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-
Confidence 567788888999999999999999999998865542 3333 69999999999999999999999998811111100
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
-.-...+..|..++...++-.+...+.+|..++........- ...++.+..++.+.++.+...|+.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 111223444455556667777777777777765532221100 3456666666666666677777777776655444
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhh
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCT 678 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~ 678 (729)
.-..+++.|+.++ +.+..++-.++..|..++... ...+. .....+..+. +.+..++..++.+|..++.
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 3334556666666 344556666666666666543 12221 1222233333 5566666666666666664
No 65
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.2e-05 Score=90.77 Aligned_cols=275 Identities=16% Similarity=0.127 Sum_probs=189.9
Q ss_pred chhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHH-h---cCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 004806 438 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-N---CGAINILVDMLHSSETKIQENAVTALLNL 513 (729)
Q Consensus 438 ~l~~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~-~---~GaI~~Lv~LL~s~d~~v~e~Al~aL~nL 513 (729)
.+......++.|..+|.+.+...+..|..+|..++.++.+.-..=. . .-.+|.++.+.++..+.++..|+.++...
T Consensus 122 ~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 122 GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 3445678999999999999888899999999999987643322200 1 13689999999999999999999999766
Q ss_pred hcCCccHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 514 SINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 514 s~~~~~k~~I~-~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
..... +..+. -..++..|..+-...++++|.+.+.+|..|......|..---.+++.-++...++.+..+...|+...
T Consensus 202 i~~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 44332 22332 23678888888888899999999999998876544333222247788888888888999999999999
Q ss_pred HhcccCcHHHHHHHH--cCcHHHHHHhcC---CCH---------------------------------------------
Q 004806 593 FNLSIYHENKARIVQ--AGAVKHLVDLMD---PAA--------------------------------------------- 622 (729)
Q Consensus 593 ~nLs~~~en~~~lv~--~G~V~~Lv~LL~---~~~--------------------------------------------- 622 (729)
..++..+-.+..+.. ...||.|+.-+. .+.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999988754444433 567788777441 110
Q ss_pred ---------HHHH---HHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 004806 623 ---------GMVD---KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 690 (729)
Q Consensus 623 ---------~v~e---~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~ 690 (729)
.++. .++.+|+|+-. ..+. .-.+|.|-+.|.+..-.++|.++.+|..++.+.-. -+...
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~-----~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~ 431 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFG-----DELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPH 431 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhH-----HHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccc
Confidence 1111 12222222211 1111 11245555555667788999999999999876532 11111
Q ss_pred --CCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 691 --GAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 691 --G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..+|.|+.++.+..+-||....|.|..+..|-
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 26888999999999999999999998887663
No 66
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.24 E-value=7.4e-05 Score=84.91 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=129.8
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~- 597 (729)
+..+.+.-....+..+....+...+..|+-++.+++. ...-+..+-...++.+||++|..+...++..++.+|+||..
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme 449 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME 449 (678)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh
Confidence 4444443333344444444566677666766766665 33344445556899999999999999999999999999976
Q ss_pred CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch--HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~--r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
+..-+.++++.|+|..|..++ +.+..++..++++|.++....+. +.+....-....++.+...++..++|.+...|.
T Consensus 450 fs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 450 FSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred cccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788899999999999999998 57788899999999999985544 333344445678888899999999999999999
Q ss_pred HHhhCCHhhHHHHHh
Q 004806 675 QLCTNSSRFCSMVLQ 689 (729)
Q Consensus 675 nL~~~~~~~~~~vl~ 689 (729)
||..+..+..+.+++
T Consensus 530 Nl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLE 544 (678)
T ss_pred HhhcCcHHHHHHHHH
Confidence 999997766665554
No 67
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.24 E-value=1e-06 Score=66.02 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=39.0
Q ss_pred cccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 142 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
.||||.+.+.+|+.+. |||.|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999876 9999999999999998667799998753
No 68
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.24 E-value=5e-07 Score=68.48 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=33.9
Q ss_pred cccCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 004806 142 CCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 182 (729)
Q Consensus 142 ~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 182 (729)
.||||++-|. .++.++|||.|++.||.+|++.. .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999984 56678999999999999999985 5899996
No 69
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.22 E-value=7.5e-05 Score=84.89 Aligned_cols=249 Identities=17% Similarity=0.081 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 533 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv 533 (729)
..+.+....|+.++..+++.-..-|.-+...+++.+|+.+|..++..++..++.+|+||... .+.|..+...|+|+.|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34566677788888888775444555566678999999999988999999999999999875 77899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCcchh--hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cHHHHHHHHc-C
Q 004806 534 HVLQTGSPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA-G 609 (729)
Q Consensus 534 ~lL~s~~~e~r~~Aa~aL~nLS~~~e~k--~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~-G 609 (729)
..+.+.+..++..+.++|.++..+.+.. ......-....++.+..++++.+++.+...|+||.-+ .+....+++. +
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 9999999999999999999999865543 3333334456678888999999999999999999764 3444444442 1
Q ss_pred -cHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHH---H-----HccCCHHHHHHHHHHHHHHhh
Q 004806 610 -AVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE---V-----VELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 610 -~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~---l-----L~s~s~~~ke~A~~aL~nL~~ 678 (729)
.+......+ .....+.......+.++..--++...-.-.+..+.++- . ..+.......+++|.+.|+..
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~ 627 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTT 627 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccC
Confidence 222222222 23333444444444444443333222222233333222 1 233456677889999999887
Q ss_pred CCH--h-hHHHHHhCCCHHHHHHhhhCC
Q 004806 679 NSS--R-FCSMVLQEGAVPPLVALSQSG 703 (729)
Q Consensus 679 ~~~--~-~~~~vl~~G~v~~Lv~Ll~sg 703 (729)
... . .+......++......+..++
T Consensus 628 ~~s~s~~dr~~~~~n~i~e~~~k~~~sd 655 (678)
T KOG1293|consen 628 TDSSSNFDRSNLKLNCIWELNNKLWNSD 655 (678)
T ss_pred CCCCcccchhhccccceechhhhcccch
Confidence 542 2 333333445555555544444
No 70
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.5e-06 Score=89.69 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=48.2
Q ss_pred CCCC-cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 004806 136 PIPS-DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 191 (729)
Q Consensus 136 ~~p~-~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 191 (729)
.+|+ .+.|-||++-+.||--+||||.||=+||..|..+.. -||.||+++++..++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVI 289 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCccee
Confidence 3444 599999999999999999999999999999999864 499999999887654
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.14 E-value=1.5e-05 Score=74.07 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=130.1
Q ss_pred hhccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch
Q 004806 564 IGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
+.+.+.+..||+-... .+.+.++....-|.|.+.++-|-..+.+..++...++-| .++..+++.+++.|.|+|-.+.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 3344677788876665 478899999999999999999999999999999999988 57788999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 642 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
...|.++++++.++..+.+........|+.+|..||......++.++...++..+.+.-.+...+-+.-|...|.-.
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888888887776777766665455555555565555443
No 72
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.14 E-value=2.2e-06 Score=61.89 Aligned_cols=39 Identities=41% Similarity=0.943 Sum_probs=35.9
Q ss_pred ccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCC
Q 004806 143 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t 181 (729)
||||++..++|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998655679986
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.10 E-value=0.00014 Score=79.44 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-Cc
Q 004806 443 ETQVRKLVEDLKSTSLDT--QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-DN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~ev--q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~-~~ 518 (729)
.+.+..|++++.+++.+. +.+|.+.|-.+.. .+|+..++..| ...++.+-+ .+.++.+...+.+|.++-.+ ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 567889999999888766 6788888877655 37899888876 444444443 35678889999999999776 45
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
....+++.|+++.++-..+..++.+..+++-+|.|.+.+ ...+..|++..+-+-|..|-.+.+.-.+..|+.+++-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 677788999999999989888999999999999999874 567888888888888888877778888999999999999
Q ss_pred cCcHHHHHHHHcCc---HHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhC---CcHHHHHHHHccCCHHHHHHHH
Q 004806 597 IYHENKARIVQAGA---VKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 597 ~~~en~~~lv~~G~---V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~---g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
.+.+.-..+.+.|. |..|+..+++..-.++ . ....+. .-++.|+-+|.+.-.+.+-.++
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD--------------~-hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~A 400 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFARD--------------A-HDYAQGRGPDDLQRLVPLLDSNRLEAQCIGA 400 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhhh--------------h-hhhhccCChHHHHHhhhhhhcchhhhhhhHH
Confidence 88887666666664 4444444443221111 0 001111 1367788888754444433333
Q ss_pred HHHHHHhhC-CHhhHHHH-HhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 671 AALLQLCTN-SSRFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 671 ~aL~nL~~~-~~~~~~~v-l~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.-|..=+.- +......| -+-|+|+.|.++..+.+.-..+-|.++|..+...
T Consensus 401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 322221111 11233334 4569999999999987777777788888888653
No 74
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.09 E-value=0.00015 Score=78.79 Aligned_cols=231 Identities=16% Similarity=0.202 Sum_probs=166.0
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 447 RKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 447 ~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..|-..+++ .+.+...-|+++|..+.+.. +.|..+..++++..|+..|.+ .+.++|.+.+-+++-|..++.....+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 344444554 55666677899999999964 799999999999999999943 37889999999999999998887777
Q ss_pred HhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhccCcc---hh----hhhhccCcHHHHHHhhcCC---CHHHHHHHHH--
Q 004806 524 ANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIED---NK----IKIGRSGAIGPLVDLLGNG---TPRGKKDAAT-- 590 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~e---~k----~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al~-- 590 (729)
...+.|+.|..+++... ..+..-.++++.|+..... .+ ..++. +.++.-++.|... ++++..+--.
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 77799999999998765 5577778888999876432 22 33343 4445555555432 3333222111
Q ss_pred -----HHHhcccC------------------------cHHHHHHHH--cCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC
Q 004806 591 -----ALFNLSIY------------------------HENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 591 -----aL~nLs~~------------------------~en~~~lv~--~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~ 637 (729)
-...||++ .+|..++-+ ..++..|+.+|+ .++.+..-|+.=++....
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 22223322 234445544 347888999994 345555566666666666
Q ss_pred -CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 638 -IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 638 -~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.++|+..+.+.||=..++++|.+.++.++.+|+.++..|..+
T Consensus 397 ~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999877654
No 75
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.09 E-value=4.3e-06 Score=88.37 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=50.7
Q ss_pred CcccccCccc-cccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC----CcccHHHHHHHHHHH
Q 004806 139 SDFCCPLSLE-LMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT----LIPNYTVKALIANWC 204 (729)
Q Consensus 139 ~~f~CpI~~~-lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~----l~pN~~l~~~I~~~~ 204 (729)
++..||+|.. ....|= +.+|||+||++||.++|..+...||.|+.++.... ..++..+.+.|.--+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRk 76 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRK 76 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHH
Confidence 5678999996 344553 23799999999999999887778999999998876 556666666655443
No 76
>PHA02926 zinc finger-like protein; Provisional
Probab=98.03 E-value=3.4e-06 Score=84.06 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCCcccccCccccccC---------ceecCCCccccHHHHHHHHhcC-----CCCCCCCCccCCCCCCccc
Q 004806 137 IPSDFCCPLSLELMTD---------PVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d---------PV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pN 193 (729)
..++..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+.+. ..+|+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 5677899999998644 4677999999999999999753 235999999875 34444
No 77
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0016 Score=78.65 Aligned_cols=274 Identities=17% Similarity=0.210 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDML----HSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL----~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
....+.+.+.+...+..++..|++++..++...+.+....... ..+|.++..| ..+|.+....++.+|..|....
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 4556667777776666699999999998888765344433332 4556555544 4456665666677776665432
Q ss_pred cc--HHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccCcc----------------------------------
Q 004806 518 NN--KSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIED---------------------------------- 559 (729)
Q Consensus 518 ~~--k~~I~~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e---------------------------------- 559 (729)
.. +..+. ..|...+.+.++. +..+|..|+..|..++.+..
T Consensus 238 pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 238 PKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 11 11110 1122222222222 13334444433333322200
Q ss_pred ---------hh----hh-------hhcc----CcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHHHH
Q 004806 560 ---------NK----IK-------IGRS----GAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHL 614 (729)
Q Consensus 560 ---------~k----~~-------I~~~----g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~~L 614 (729)
+. .. ++-. -.++.+-.+|.+.+..-+++|+.+|..++.. ++.-.. .=..+++..
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~V 394 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIV 394 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHH
Confidence 00 00 0000 1233444556677777788888888777552 221111 113356666
Q ss_pred HHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHhh-HHHHHhC
Q 004806 615 VDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRF-CSMVLQE 690 (729)
Q Consensus 615 v~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~~-~~~vl~~ 690 (729)
+..| ++.+.++-.|+.+++.+++ ....-+.-...-.++.|+..+.+ .+++++.+|+.+|.|+....++. ..-.+ .
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d 473 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-D 473 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-H
Confidence 6666 6888999999999999998 34444444556678889999876 68899999999999998876531 11111 2
Q ss_pred CCHH-HHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 691 GAVP-PLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 691 G~v~-~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.+. .|..+++++.+.+++.|...|.-...
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 4555 66677888999999999888765543
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.94 E-value=8.8e-06 Score=83.55 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=59.1
Q ss_pred ccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCcc-CCCCCCcccHHHHHHHHHHHHHc
Q 004806 141 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~-l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+.||+|+.|.++||-+ +|||+||..||+..+......||.|... +-.+.|.|++..+..|+.+.+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 6899999999999988777889999653 55578999999999999998743
No 79
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.9e-06 Score=90.86 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=56.9
Q ss_pred CCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCC-CCCCcccHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLA-HTTLIPNYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~-~~~l~pN~~l~~~I~~~ 203 (729)
+=.+|.||||++|.+--.+++ |+|-||+.||-+-+..++..||.||+.+. ...|.++...-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345789999999999999885 99999999999999999999999999975 45788776666666654
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=97.93 E-value=0.0039 Score=74.75 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..+..+.+.+.+.++.++..|+.++..+...++ ..+.+.|.++.|..+|.+.|+.|+.+|+.+|..+....... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 4566777788889999999999999999977554 33456789999999999999999999999999996543221 2
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
-...+.+..|+..|..-++=.+...+.+|... .+...... ...+..+...|++.++.+.-.|+.++.++...
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 22345566677777666666666666666442 12111111 25667777778888888888888888887653
No 81
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00034 Score=84.17 Aligned_cols=234 Identities=18% Similarity=0.167 Sum_probs=152.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
-.++.+-.+|.+.++..+..|+.+|..++.+..+. .+... ..++..++.|.++++.|+..|+.+|..++.+ ...-.
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDV--MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 45667777888999999999999999998865433 22222 6778888899999999999999999999876 22233
Q ss_pred HHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcch-hhhhhccCcHHH-HHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 522 AIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDN-KIKIGRSGAIGP-LVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~-Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
.-...-.++.|+..+.+. ++.++.+|+.+|.|++..-.. ...-.-.+.+.. |..|+.++.+.+++.++.+|...+..
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 333445677888888764 589999999999999763222 111112366663 33455678899999999999998764
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC--CcchHHHHHhC--CcHHHHHHH---HccCCHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT--IPDGRVAIGQE--NGIPVLVEV---VELGSARGKENA 669 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~--~~e~r~~i~~~--g~I~~Lv~l---L~s~s~~~ke~A 669 (729)
.+..-.-.-...+|.|..+|. .+.+.+.....++.+++. ..-|++.+... ..+..+..+ ....+...++..
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 443332233557777777773 223333333333333322 23445555432 234555554 233455666777
Q ss_pred HHHHHHHhhC
Q 004806 670 AAALLQLCTN 679 (729)
Q Consensus 670 ~~aL~nL~~~ 679 (729)
.....++|+.
T Consensus 586 ~~~warmc~i 595 (1075)
T KOG2171|consen 586 IAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHH
Confidence 7777777764
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.91 E-value=0.001 Score=74.55 Aligned_cols=220 Identities=16% Similarity=0.052 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
...++.|+..|. ..+.++...++..+. ....+ .++..|+..|.+.++.++..++.+|..+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------
Confidence 345677777774 445555544333332 22111 13667777777777777777777765441
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
.....+.|+.+|.+.++.++..++.++... .....+.|..+|++.++.++..|+.+|..|-.
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 224456666666666666666555554431 12344566666666666666666666666522
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHh----C------------------CcHHHHHHHH
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ----E------------------NGIPVLVEVV 658 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~----~------------------g~I~~Lv~lL 658 (729)
..+++.|...+ +.+..++..|+..|..+.. ++....+.. . ..++.|..++
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll 249 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELL 249 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHh
Confidence 22334444444 3455555555555544422 111111110 1 2344555555
Q ss_pred ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 659 ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 659 ~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.. .+++.++.+|..+-.- ..++.|+..+.... +++.|.+.++.+..
T Consensus 250 ~d~--~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 250 QAA--ATRREALRAVGLVGDV-----------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred cCh--hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 443 3666666666644322 36888888776543 88889988888765
No 83
>PTZ00429 beta-adaptin; Provisional
Probab=97.90 E-value=0.0015 Score=78.20 Aligned_cols=257 Identities=16% Similarity=0.111 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
......+++.+.+.+.++++-.--.|..++..+++.- . -+|..|.+=|.+.++.++-.|+++|.++-...
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-l----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~----- 136 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-L----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS----- 136 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-H----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----
Confidence 4567777888888888888777777777777554321 1 24667777788889999999999998774311
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
+ -.-.+.++.+.|.+.++-+|..|+-++..|-... ...+.+.+.++.|.++|.+.++.+..+|+.+|..+.......
T Consensus 137 i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 137 V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 1 1124666778888999999999999999985422 233445688999999999999999999999999997643322
Q ss_pred HHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-
Q 004806 603 ARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS- 680 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~- 680 (729)
. -...+.+..|+..+. -+.-.....+.+|... .+...... ...+..+...|++.++.+.-.|+.+++++....
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~ 288 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS 288 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Confidence 2 123445566666662 2222223444444331 22221111 235677778888889999999999999887653
Q ss_pred HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 681 ~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+.....+.. ....+|+.|+ ++.+.++-.+..-|..+.
T Consensus 289 ~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 289 QELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 222222211 1234555553 455667766666555443
No 84
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.86 E-value=1.2e-05 Score=61.01 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=35.1
Q ss_pred cccCccccc---cCceecCCCccccHHHHHHHHhcCCCCCCCCCc
Q 004806 142 CCPLSLELM---TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 183 (729)
Q Consensus 142 ~CpI~~~lm---~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 183 (729)
.|+||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999999 468889999999999999999 44467999985
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0045 Score=71.91 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCh------hhH-----------HHHHhcCcHHHHHHHHcCCCHHHH
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNM------DNR-----------MVIANCGAINILVDMLHSSETKIQ 503 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~------~nr-----------~~I~~~GaI~~Lv~LL~s~d~~v~ 503 (729)
...++.|+.-|+.+ +++....++..+..+..+.+ ..+ .+|...|.|..|+.++...|..|+
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 45677888888743 77888899999998887652 111 234446999999999999999999
Q ss_pred HHHHHHHHHhhcC--CccHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhcC
Q 004806 504 ENAVTALLNLSIN--DNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGN 579 (729)
Q Consensus 504 e~Al~aL~nLs~~--~~~k~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~~ 579 (729)
..|+..|.+|-.. .+.+..+... -+|..|+.+|.+....+|-.+.-.|..|..+.. .++.++-..++..|+.++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988443 4556666654 799999999999888899999999999988544 45555567999999999985
Q ss_pred CC----HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcC----CC--------HHH--HHHHHHHHHHHhCCc-
Q 004806 580 GT----PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD----PA--------AGM--VDKAVAVLANLATIP- 639 (729)
Q Consensus 580 ~~----~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~----~~--------~~v--~e~Al~~L~nLa~~~- 639 (729)
.. --+..+|+..|.||.. +..|...+.+.+-||.|..+|. .+ ..+ +..++.++..|....
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 41 2468899999999987 5578888899999999998882 11 112 245677777776521
Q ss_pred ------chHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCHhhHHHHHh
Q 004806 640 ------DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQ 689 (729)
Q Consensus 640 ------e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~nL~~~~~~~~~~vl~ 689 (729)
.++.++...+++..|..++.+. ...++..++-++.++.+++..++..+.+
T Consensus 300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 1235667788899999988764 5678888999999999999888887765
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=97.83 E-value=0.00089 Score=77.76 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=158.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----cHHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHHhc
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDN----NKSAIANANAIEPLIHVLQTG-------SPEARENAAATLFSLS 555 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~----~k~~I~~~g~I~~Lv~lL~s~-------~~e~r~~Aa~aL~nLS 555 (729)
.+...+.+|++.+.+=+-.++..+.++..+.+ .++.|.++=+.+-|-++|+++ ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35566778888774444555666666654322 345677887778888999873 3557888899999999
Q ss_pred cCcchhhhhhccCcHHHHHHhhcCCCH-HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 004806 556 VIEDNKIKIGRSGAIGPLVDLLGNGTP-RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN 634 (729)
Q Consensus 556 ~~~e~k~~I~~~g~I~~Lv~LL~~~~~-~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~n 634 (729)
..++....---.+-||.|++.+...+. .+...|+.+|..++..++++..+++.|+|+.|++.+.......+.|+.+|.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLN 165 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHH
Confidence 876665432224789999999988776 9999999999999999999999999999999999996566778999999999
Q ss_pred HhCCcchHHHHHh-C----CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhh-----HHHHHhCCCHHHHHHhhhCC-
Q 004806 635 LATIPDGRVAIGQ-E----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF-----CSMVLQEGAVPPLVALSQSG- 703 (729)
Q Consensus 635 La~~~e~r~~i~~-~----g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~-----~~~vl~~G~v~~Lv~Ll~sg- 703 (729)
++...... ..-+ . ..++.|...+.......+-..+..|..+-...+.. ...-+-..+...|..++++.
T Consensus 166 Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 166 LLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 98743321 1111 1 22445555555555566677788887776665311 11112223455567777776
Q ss_pred CHHHHHHHHHHHHHh
Q 004806 704 TPRAKEKAQALLSYF 718 (729)
Q Consensus 704 ~~rvr~~A~~lL~~L 718 (729)
++.-|..|..+...|
T Consensus 245 ~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 245 TPSQRDPALNLAASL 259 (543)
T ss_pred CHHHHHHHHHHHHHH
Confidence 355555555544444
No 87
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1e-05 Score=89.54 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=58.5
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcC----CCCCCCCCccCCCCCCcccH----HHHHHHHHHHHHcC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHTTLIPNY----TVKALIANWCELNN 208 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~----~~~cP~t~~~l~~~~l~pN~----~l~~~I~~~~~~~~ 208 (729)
.+.+..||||++-..=|+.+.|||.||=.||.+||..+ ...||.|+..+..++|.|-+ .-+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 44589999999999999999999999999999999854 45699999999998887753 23445666666666
No 88
>PF05536 Neurochondrin: Neurochondrin
Probab=97.80 E-value=0.00065 Score=78.88 Aligned_cols=192 Identities=19% Similarity=0.181 Sum_probs=139.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc----hhhhhhccCcHHHHHHhhcCC-------CHHHHHHHHHHHHhcc
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLS 596 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~~~-------~~~v~~~Al~aL~nLs 596 (729)
.+...+.+|+..+++-|-.++..+..+....+ .+..|.+.=+.+-|-.||+++ ....+..|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46677889998887777777788888876433 244577775678888999873 3466778899999999
Q ss_pred cCcHHHHHHHHcCcHHHHHHhc-CCCH-HHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 597 IYHENKARIVQAGAVKHLVDLM-DPAA-GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 597 ~~~en~~~lv~~G~V~~Lv~LL-~~~~-~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
..++....---.+.||.|++++ ..+. .++..++.+|..++.+++|+.++++.|+++.|++.+.+ .+...+.|+.+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 9777654333356899999998 4444 89999999999999999999999999999999999987 6678999999999
Q ss_pred HHhhCCHhhHHH---HHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 675 QLCTNSSRFCSM---VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 675 nL~~~~~~~~~~---vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+++.......-. -.-..+++.|...+.......+-.+..+|..|-.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 998865411100 0001345566666665555555555555555433
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00045 Score=72.51 Aligned_cols=233 Identities=21% Similarity=0.262 Sum_probs=161.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc
Q 004806 489 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 567 (729)
Q Consensus 489 ~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~-~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~ 567 (729)
.-|+.||.+.++.++..|+..|.++... ..+.... +...++.+.+++....+ .+.|+.+|.|++.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999888765 3333322 23567778888877665 678899999999999888888776
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH-------cCcHHHHHHhcCCCH---HHHHHHHHHHHHHhC
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-------AGAVKHLVDLMDPAA---GMVDKAVAVLANLAT 637 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-------~G~V~~Lv~LL~~~~---~v~e~Al~~L~nLa~ 637 (729)
.+..++..+.+.........+.+|.||+..+.....+.. .|.+.....+++.+. .-......++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888888988888777888899999999997766554432 344444444554221 234567889999999
Q ss_pred CcchHHHHHhCCc--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCC--CHHHHH----------------
Q 004806 638 IPDGRVAIGQENG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG--AVPPLV---------------- 697 (729)
Q Consensus 638 ~~e~r~~i~~~g~--I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G--~v~~Lv---------------- 697 (729)
...||..+.+... +..++.+-..++.--+...+.+|.|+|.... +...++.++ .++.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~ 240 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEELSEEDMAK 240 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence 9999999987663 2233333333455556778889999998765 333333321 222221
Q ss_pred -----HhhhC-----CCHHHHHHHHHHHHHhhcCcCcCC
Q 004806 698 -----ALSQS-----GTPRAKEKAQALLSYFRNQRHGNA 726 (729)
Q Consensus 698 -----~Ll~s-----g~~rvr~~A~~lL~~L~~~~~~~~ 726 (729)
.++.. .++.++++-.++|-.|...++||+
T Consensus 241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 23321 246788888888888877777653
No 90
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.4e-05 Score=81.73 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=45.0
Q ss_pred CcccccCccccccCceecCCCccccHHHHHH-HHhcCCCCCCCCCccCCCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKK-WIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~-~~~~~~~~cP~t~~~l~~~~ 189 (729)
.+|.|+||.+.|.+|+-++|||.||=.||-. |-.+....||.||+......
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4899999999999999999999999999999 87776667999998765543
No 91
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.1e-05 Score=89.74 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=49.3
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
-+.||.|..=.+|-|++.|||.||-.||+..+......||.|+..|...++.|
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 37899999999999999999999999999999988889999999998888765
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.71 E-value=6.8e-05 Score=55.76 Aligned_cols=40 Identities=38% Similarity=0.521 Sum_probs=37.8
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 475 s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
+++++..+.+.|+|+.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999996
No 93
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00084 Score=75.28 Aligned_cols=232 Identities=17% Similarity=0.152 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAK---HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~---~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
......-|..+|...+.+++..+-..|..+-. .++.. +--...++.|+.-+.++++.+|..|+..|.....-..
T Consensus 206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 35677888999999999998655544443322 12211 1123678999999999999999999988877754333
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHH---HHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 519 NKSAIANANAIEPLIHVLQTGSP-EARENAAA---TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~-e~r~~Aa~---aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..-...-.|.+..++..+.+... .+++.+.. .|..+...+..+..|--...|..|...+.+.....+..++..+..
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33344455777777777766554 34444432 334444444444343223577888889999999999999999999
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
|-....+..........+.|+.-| +.+..++..++.+|+++|........ ...+..|+++......-....+..++
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lII 439 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLII 439 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHH
Confidence 877777777667788889999888 67788999999999999997766511 12345556666667777888899999
Q ss_pred HHHhhC
Q 004806 674 LQLCTN 679 (729)
Q Consensus 674 ~nL~~~ 679 (729)
..||.-
T Consensus 440 RqlC~l 445 (675)
T KOG0212|consen 440 RQLCLL 445 (675)
T ss_pred HHHHHH
Confidence 999974
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.004 Score=65.92 Aligned_cols=248 Identities=14% Similarity=0.180 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH----HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR----MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr----~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
...++.|-..|..++..++.-++..+..+..+...|- ..++.+|..+.++..+-.+|.++...|...|..++..+.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 4567777777888888888888888887777655332 234577999999999999999999999999999999888
Q ss_pred cHHHHHhcCCHHHH--HHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHh
Q 004806 519 NKSAIANANAIEPL--IHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFN 594 (729)
Q Consensus 519 ~k~~I~~~g~I~~L--v~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~n 594 (729)
.-..|.+...++.+ ..+-..-+.-+|......+..+.+ .++.....-..|.+..|..=|+- .+.-++..++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 88888888766654 333333445566667777776655 34444444556888877766654 577778888888999
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHH----HHHHHHhCCcchHHHHHhC--CcHHHHHHHHccCCHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAV----AVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARG 665 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al----~~L~nLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ 665 (729)
|+..+..++.+.+.|+|+.+..++ +.++--.-.++ ..+.+.+.-.-.-+++++. -+|...++++...++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 999999999999999999999998 23332222233 3444444333233445443 24667778888999999
Q ss_pred HHHHHHHHHHHhhCCHhhHHHHHhCC
Q 004806 666 KENAAAALLQLCTNSSRFCSMVLQEG 691 (729)
Q Consensus 666 ke~A~~aL~nL~~~~~~~~~~vl~~G 691 (729)
++.|+.+|..|.++.. ..+.+..-|
T Consensus 321 ieaAiDalGilGSnte-GadlllkTg 345 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTE-GADLLLKTG 345 (524)
T ss_pred HHHHHHHHHhccCCcc-hhHHHhccC
Confidence 9999999999988765 445555544
No 95
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.64 E-value=0.011 Score=65.61 Aligned_cols=272 Identities=15% Similarity=0.168 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--~~v~e~Al~aL~nLs~~~~~k 520 (729)
...+..+..++-+++.+++..+.+.+|.+..+ ...-..+.+.+.--.++.-|..++ ..=+++|+..+..+..-..+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 34555555455556689999999999999884 466777777776667777776543 223678888887764332221
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.. ...|.+..|+.+....++..+..+..+|+.|+.. +-..+...|++..|++.+.++...+....+.++..+...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 11 2447888999999999999999999999999863 22345567999999999988877788888889999988888
Q ss_pred HHHHHHHcCcHHHHHHhc-CC-------CH--HHHHHHHHHHHHHhCCcchHHHHHhC--CcHHHHHHHHccCCHHHHHH
Q 004806 601 NKARIVQAGAVKHLVDLM-DP-------AA--GMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKEN 668 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~-------~~--~v~e~Al~~L~nLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ke~ 668 (729)
.|..+...--+..++.-+ +. +. .....+..++..+-.+=.|--.+... .++..|+..|..+++.+++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887666544444444433 21 22 22333444444443333343333322 35677777777666666666
Q ss_pred HHHHHHHHhhCC--------------------------------------------H----h----hHHHHHhCCCHHHH
Q 004806 669 AAAALLQLCTNS--------------------------------------------S----R----FCSMVLQEGAVPPL 696 (729)
Q Consensus 669 A~~aL~nL~~~~--------------------------------------------~----~----~~~~vl~~G~v~~L 696 (729)
...++..+-.-. . . ....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 665555443100 0 0 11234678999999
Q ss_pred HHhhhCC-CHHHHHHHHHHHHHh
Q 004806 697 VALSQSG-TPRAKEKAQALLSYF 718 (729)
Q Consensus 697 v~Ll~sg-~~rvr~~A~~lL~~L 718 (729)
+.++.+. ++.+.+||.-+|..+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999998 688999999888754
No 96
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00028 Score=78.46 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=132.8
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcCCCH
Q 004806 463 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSP 541 (729)
Q Consensus 463 ~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s~~~ 541 (729)
.++.+|..+++.-..-|.-+.+...+++|+.+|..++..+.--+...++|+... .+-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 455566677775556777888889999999999887776777778888998654 5668888999999999999999999
Q ss_pred HHHHHHHHHHHHhccCcch--hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cH---HHHHHHHcC----cH
Q 004806 542 EARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE---NKARIVQAG----AV 611 (729)
Q Consensus 542 e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~e---n~~~lv~~G----~V 611 (729)
.++.++.|+|..+-.+.+. +-.....-++..++++.+++.-.++..++..|.|++.+ .. .+..++++- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999886444 44556667789999999999999999999999999652 22 222222221 33
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHH
Q 004806 612 KHLVDLMD-PAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 612 ~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
+.|++.++ .++-..+..+.+|.+++.+.+...
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~ 600 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLD 600 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHH
Confidence 34444443 233334556777777777655543
No 97
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.013 Score=64.47 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=174.7
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC------Ccc----HHHHHhcCCHHHHH
Q 004806 464 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN------DNN----KSAIANANAIEPLI 533 (729)
Q Consensus 464 Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~------~~~----k~~I~~~g~I~~Lv 533 (729)
.+..+..+|. -|.---.+++.++|+.|+.+|.+++.++....+..|..|.-. .+. -.++++.++++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 5566666666 566777889999999999999999999999888888888531 222 23455678888888
Q ss_pred HHhcCCC------HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHhccc-CcHHHH
Q 004806 534 HVLQTGS------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSI-YHENKA 603 (729)
Q Consensus 534 ~lL~s~~------~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~-~~en~~ 603 (729)
.-+..-+ .....++.+.+-|+.. .+.....+++.|.+.-|+.-+... -...+..|..+|.-+-. ..+++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8765432 3356677888888877 456677788888888887754432 23456667777776655 445888
Q ss_pred HHHHcCcHHHHHHhc------C----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 604 RIVQAGAVKHLVDLM------D----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL------~----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
.+....+|..|++-+ + +...+.++....|..+...++++..++...|++...-+++. ....+-.|+.+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 888889999998866 2 13467888899999999999999999988887765555554 445666788999
Q ss_pred HHHhhCCH--hhHHHHHhCCCHHHHHHhhh
Q 004806 674 LQLCTNSS--RFCSMVLQEGAVPPLVALSQ 701 (729)
Q Consensus 674 ~nL~~~~~--~~~~~vl~~G~v~~Lv~Ll~ 701 (729)
-....+.+ .+|...++.+++..+.-+..
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 88888765 68999999888877777665
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.59 E-value=3.1e-05 Score=83.67 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=46.8
Q ss_pred ccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 141 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
+.|.|++++-++||+-+ +||.|||+-|++|+.+. .+||+|+++|+.++|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeee
Confidence 57999999999999986 89999999999999986 45999999999988877
No 99
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5e-05 Score=83.73 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=60.0
Q ss_pred CCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC-----CCcccHHHHHHHHHHHHH
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-----TLIPNYTVKALIANWCEL 206 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-----~l~pN~~l~~~I~~~~~~ 206 (729)
+..++.+|-|-||..++.+||++||||+||+.||.+.+... .-||.||.++.+. ...+|+.+..+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 45579999999999999999999999999999999977754 4599999988642 334577888999988764
No 100
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.58 E-value=0.00085 Score=73.50 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=139.3
Q ss_pred hHHHHHhcCcHHHHHHHHcCCCHH--HHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 004806 478 NRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSL 554 (729)
Q Consensus 478 nr~~I~~~GaI~~Lv~LL~s~d~~--v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nL 554 (729)
....|..-|+++.|+.++..++-+ ++.+|...|..+. ..+|+..++..| +..++.+-+. ..++.....+.+|.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 344566779999999999998755 4788888887763 345777777766 5555555543 3478888899999999
Q ss_pred ccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc--CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHH
Q 004806 555 SVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVA 630 (729)
Q Consensus 555 S~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~ 630 (729)
-.+ ++....+++.|++..++-.++..++.+.++|+.+|.|+.. ..+.+.+|++..+..-|..|-. .+.-++-.|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 774 5567788889999999988999999999999999999887 4567888999988888888763 44445677888
Q ss_pred HHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 631 VLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
+++.|+++.+....+-..|.+..+--++.+
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 999999988888888777765444334433
No 101
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.56 E-value=7.4e-05 Score=63.13 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=34.7
Q ss_pred CCCcccccCccccccCc-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 004806 137 IPSDFCCPLSLELMTDP-------------VIVASGQTYERAFIKKWIDLGLFVCPKTR 182 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP-------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 182 (729)
++++- |+||++-|.|| +..+|||.|-..||.+|+... .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 34443 99999999555 335899999999999999876 4899997
No 102
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00075 Score=75.17 Aligned_cols=182 Identities=12% Similarity=0.109 Sum_probs=141.0
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
-|.-+.+....++|+++|..++..+.-.+...++|+.. ....+..+.+.|.|..|+.++.+.+...+....|.|++|..
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 36667778899999999998777777778888999877 56668888899999999999999899999999999999987
Q ss_pred CcH--HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc----chHHHHHhCC----cHHHHHHHHccCCHHHH
Q 004806 598 YHE--NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP----DGRVAIGQEN----GIPVLVEVVELGSARGK 666 (729)
Q Consensus 598 ~~e--n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~----e~r~~i~~~g----~I~~Lv~lL~s~s~~~k 666 (729)
+.+ .+-+++..-++..++++. ++...+.+.++.+|.|+.... +.+..++... ....|++.++..+|...
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 443 345667777888899998 688899999999999997722 2233222221 35667777888899888
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHh-CCCHHHHHHhh
Q 004806 667 ENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALS 700 (729)
Q Consensus 667 e~A~~aL~nL~~~~~~~~~~vl~-~G~v~~Lv~Ll 700 (729)
+..+.+|.++++.++..++.|.+ ...+..+..++
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 89999999999888766666664 34444444444
No 103
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.55 E-value=0.0087 Score=65.20 Aligned_cols=184 Identities=24% Similarity=0.329 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..+..+++.+.+.+..++..|+..+..+.. .-+++.|..+|.+.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 468889999998888888888888555432 357899999999999999999999887773
Q ss_pred HhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHH------------HHHHHH
Q 004806 524 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG------------KKDAAT 590 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v------------~~~Al~ 590 (729)
....++.|+.+|. +.+..++..++.+|..+- ...++.+|+.++.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2357899999998 578889999999998763 3456888888888865332 333333
Q ss_pred HHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 004806 591 ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 669 (729)
Q Consensus 591 aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 669 (729)
+|..+ -....++.+..++ +....++..|..+|..+.... ..+...+...+...+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 33332 2244667777777 455677788888888877654 2334666666666777776666
Q ss_pred HHHHHHH
Q 004806 670 AAALLQL 676 (729)
Q Consensus 670 ~~aL~nL 676 (729)
+.+|..+
T Consensus 234 ~~~l~~~ 240 (335)
T COG1413 234 LLALGEI 240 (335)
T ss_pred HHHhccc
Confidence 6665544
No 104
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.52 E-value=0.0097 Score=65.98 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=170.6
Q ss_pred HHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC--CHHHHH
Q 004806 468 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARE 545 (729)
Q Consensus 468 L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~--~~e~r~ 545 (729)
|..+-+..+.-+..+.-....+.+..++-+++.+++..+.+++..+..+...-..+...+.---++.-|... ...-|+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 333344445555555444555666655656669999999999999988888877787777666666666554 356788
Q ss_pred HHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHH
Q 004806 546 NAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 624 (729)
Q Consensus 546 ~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v 624 (729)
+|...+..+.........+ -.|++..++.+..+.+.+.+..|+.+|+.|+..+ -..++..|++..|++.+ +....+
T Consensus 87 QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhH
Confidence 9999888876553332222 3588999999999999999999999999998743 24567899999999987 555558
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC-------CH--HHHHHHHHHHHHHhhCCHhhHHHHHh-CCCHH
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-------SA--RGKENAAAALLQLCTNSSRFCSMVLQ-EGAVP 694 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~-------s~--~~ke~A~~aL~nL~~~~~~~~~~vl~-~G~v~ 694 (729)
.+..+.++-.+..++..|..+...--+..++.-+... +. ..-..+..++..+-+.=+.....-.. ..++.
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lk 243 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLK 243 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHH
Confidence 8889999999999999998876544455555444221 22 23344455554444332211111111 24788
Q ss_pred HHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 695 PLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 695 ~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.|+..++..++++|+...++|--+
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 899999999999999888866544
No 105
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.51 E-value=6e-05 Score=83.90 Aligned_cols=66 Identities=18% Similarity=0.451 Sum_probs=56.6
Q ss_pred CCCcccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc-cHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-N~~l~~~I~~~ 203 (729)
+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.|+..+.....+| -..++..+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 6778999999999999999 499999999999999998 577999999988877776 34566666665
No 106
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.0034 Score=74.79 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=153.9
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHH-hhcCCccHHHHHhcCCHHHHHHHhcC-C--CHHHHHHHHHHHHHhcc-C
Q 004806 483 ANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSAIANANAIEPLIHVLQT-G--SPEARENAAATLFSLSV-I 557 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~n-Ls~~~~~k~~I~~~g~I~~Lv~lL~s-~--~~e~r~~Aa~aL~nLS~-~ 557 (729)
...|..|..++||++.-.+++---+-+=.. |+.++..+..++..++-...+.+|.. + +++-|..|+-+|..+.. +
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 345999999999999988877654444334 47788888888888888888888876 3 25788888888888877 4
Q ss_pred cchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 004806 558 EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 634 (729)
Q Consensus 558 ~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~n 634 (729)
.-.+....+.+.|...+..|.++ .+-++..++-+|..|-. ++++|+.-++.++...|..+| ++-.+++..|+.+|+.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 55677777789999999999986 67888899999999865 788999889999999999999 5678899999999998
Q ss_pred HhCC-----cchHHHH------------HhCCcH---HHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH
Q 004806 635 LATI-----PDGRVAI------------GQENGI---PVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684 (729)
Q Consensus 635 La~~-----~e~r~~i------------~~~g~I---~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~ 684 (729)
+..+ ++....+ ++.... -.++.++..+++.++...+.+|..+..+...+.
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 8773 3332211 111122 256666777899998888888888877665433
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.50 E-value=0.015 Score=66.16 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=162.1
Q ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHH
Q 004806 443 ETQVRKLVEDL----------KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAV 507 (729)
Q Consensus 443 ~~~V~~Lv~~L----------~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-----d~~v~e~Al 507 (729)
+..+..|+++- ...+..+..+|+++|.++...++..|..+.+.|..+.++..|+.. +.++.-...
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~ 100 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS 100 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence 45667777765 245778899999999999999999999999999999999999875 778888888
Q ss_pred HHHHHhhc-CCccHHHHH-hcCCHHHHHHHhcC-----------------CCHHHHHHHHHHHHHhccCcchhhhhhccC
Q 004806 508 TALLNLSI-NDNNKSAIA-NANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRSG 568 (729)
Q Consensus 508 ~aL~nLs~-~~~~k~~I~-~~g~I~~Lv~lL~s-----------------~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g 568 (729)
++|.-++. ....+..++ +.+++..|+..|.. ........++.+|||+.........-....
T Consensus 101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~ 180 (446)
T PF10165_consen 101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP 180 (446)
T ss_pred HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence 88877754 445555554 45788877776531 134467788999999977433322211224
Q ss_pred cHHHHHHhhcC---------CCHHHHHHHHHHHHhcccC-cHH-------H----HHHHHcCcHHHHHHhcC------CC
Q 004806 569 AIGPLVDLLGN---------GTPRGKKDAATALFNLSIY-HEN-------K----ARIVQAGAVKHLVDLMD------PA 621 (729)
Q Consensus 569 ~I~~Lv~LL~~---------~~~~v~~~Al~aL~nLs~~-~en-------~----~~lv~~G~V~~Lv~LL~------~~ 621 (729)
.++.|+.+|.. ........++.+|.|+-.. ... . .......++..|+.+|+ ..
T Consensus 181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~ 260 (446)
T PF10165_consen 181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA 260 (446)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 44444444321 1346677888888888321 111 0 00122447778888873 11
Q ss_pred ---HHHHHHHHHHHHHHhCC-cchHHHHHh--------------CC--cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 622 ---AGMVDKAVAVLANLATI-PDGRVAIGQ--------------EN--GIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 622 ---~~v~e~Al~~L~nLa~~-~e~r~~i~~--------------~g--~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.....-.+.+|..++.. ...|..+.. .| .-..|++++.+..+.++..++..|+.||..+.
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 24556677888888875 444554432 12 35789999988889999999999999998765
No 108
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.002 Score=73.55 Aligned_cols=268 Identities=14% Similarity=0.098 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
....++++++++++.++.++..|+.++-.+.-.. +....... .++.-|..+-.+++++|+.+.+.+|.-|..-...|
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 3678999999999999999999999998776532 33333332 46677777777889999999999998775322111
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--CcHHHHHHhhcCCCH----------------
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGTP---------------- 582 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~~~~~---------------- 582 (729)
-.---.+.++.+++.-++.+.++-..|+.....++..+-.+..+... ..||.|+.=+...+.
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD 329 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD 329 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence 11111356777788888888889999999999998877666655442 566666653332110
Q ss_pred ----------------------------------------HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc----
Q 004806 583 ----------------------------------------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---- 618 (729)
Q Consensus 583 ----------------------------------------~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---- 618 (729)
.+++-.+.+|--| ..+....+++.++.+|
T Consensus 330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLKEHL 402 (885)
T ss_pred hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHHHHc
Confidence 0111111111111 1123345566666665
Q ss_pred -CCCHHHHHHHHHHHHHHhCCcchHHHHHhC--CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHH
Q 004806 619 -DPAAGMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVP 694 (729)
Q Consensus 619 -~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~ 694 (729)
.++..+++.++-+|+.+|. .+-.-+... ..||.|+.+|....+.++.-.+|+|...+..-- +..+.... .++.
T Consensus 403 ~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~ 479 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLE 479 (885)
T ss_pred CcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHH
Confidence 3567788888888888874 112222221 258889999999999999999999976554311 01111111 1355
Q ss_pred HHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 695 PLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 695 ~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.|++.+-.++.+|++.|..+...|...
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 566666778899999999988877664
No 109
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.46 E-value=6.6e-05 Score=79.10 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=54.0
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~I~~~ 203 (729)
+=....|++|..+|.|+-++ -|=|||||+||-+||.. ..+||.|+..+..+ .+.++.+|+.++.++
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 44568899999999999986 59999999999999998 46799999877654 456677777776654
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.43 E-value=0.006 Score=66.48 Aligned_cols=189 Identities=29% Similarity=0.336 Sum_probs=131.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
..++.++.+|.+.+..++..|...|..+. ...+++.|..+|.+.+..+|..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 57889999999999999999998876552 335789999999999999999999977765 3
Q ss_pred ccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHH-HHhCCcchH-
Q 004806 566 RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA-NLATIPDGR- 642 (729)
Q Consensus 566 ~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~-nLa~~~e~r- 642 (729)
...+++.|+.+|. +++..++..|+++|..+-. ..++..|+.++....... +...+. .+. ..|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~--a~~~~~~~~~---~~r~ 167 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS--AAAALDAALL---DVRA 167 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh--hhhhccchHH---HHHH
Confidence 3578999999999 5899999999999998733 233667777774322111 111110 000 111
Q ss_pred ---HHH---HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHH
Q 004806 643 ---VAI---GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716 (729)
Q Consensus 643 ---~~i---~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~ 716 (729)
..+ .....++.+...+......++..|+.+|..+.... ..+.+.+...+..+...++.++...|.
T Consensus 168 ~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 168 AAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred HHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 111 12346889999999989999999999999888775 223455555555555556555555554
Q ss_pred Hh
Q 004806 717 YF 718 (729)
Q Consensus 717 ~L 718 (729)
.+
T Consensus 239 ~~ 240 (335)
T COG1413 239 EI 240 (335)
T ss_pred cc
Confidence 43
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.39 E-value=0.00029 Score=52.32 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=37.7
Q ss_pred cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 639 PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
++.+..+++.|+++.|+.+|.+.++.++++|+++|+|||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5778999999999999999999999999999999999984
No 112
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.049 Score=60.03 Aligned_cols=238 Identities=16% Similarity=0.160 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-----hhh----HHHHHhcCcHHHHHHHHcCCC------HHHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-----MDN----RMVIANCGAINILVDMLHSSE------TKIQENAV 507 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-----~~n----r~~I~~~GaI~~Lv~LL~s~d------~~v~e~Al 507 (729)
-..|+.|+++|.+.+.++-...+..|+.|+-.+ .+. -..+++.+.++.|+.-+..=| ..-..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357899999999999999999999999887643 222 234555688888888775433 23356777
Q ss_pred HHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhc---CC
Q 004806 508 TALLNLSI-NDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG---NG 580 (729)
Q Consensus 508 ~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~---~~ 580 (729)
.++.|+.. .+.....+++.|.+..|+.-+... -..-+.+|..+|.-+-.+ .+++..++...+|..|+.-+. ..
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88888854 567778888888888877755433 355788888888887775 448888888888888877653 11
Q ss_pred ------CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchH---HHHHhCCcH
Q 004806 581 ------TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGR---VAIGQENGI 651 (729)
Q Consensus 581 ------~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r---~~i~~~g~I 651 (729)
..+...+-..+|+.+...+.|+.+++...+++.+.-++....-.+-.++++|-.+...+++. ..+++..|+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 13456667778888888999999999988887766666544445567899999998877764 455666677
Q ss_pred HHHHHHHc-c---------CCHHHHHHHHHHHHHHhhCC
Q 004806 652 PVLVEVVE-L---------GSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 652 ~~Lv~lL~-s---------~s~~~ke~A~~aL~nL~~~~ 680 (729)
..++.+.. . .-...-++.+.+|+.+-.+.
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 66665543 1 22456788888888887654
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.37 E-value=0.0062 Score=69.27 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=166.4
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHH----------cCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHH
Q 004806 465 TAELRLLAKHNMDNRMVIANCGAINILVDML----------HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 533 (729)
Q Consensus 465 l~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL----------~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv 533 (729)
+..|+.|+++ +.+...+....++..|+.+- ...+..+..+|+.+|+|+... +..|..+.+.|+.+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 5566667663 45555566556666666654 345788999999999998765 66788888999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHHhcc-Ccchhhhhhcc-CcHHHHHHhhcC-----------------CCHHHHHHHH
Q 004806 534 HVLQTG-----SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN-----------------GTPRGKKDAA 589 (729)
Q Consensus 534 ~lL~s~-----~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~~-----------------~~~~v~~~Al 589 (729)
..|+.. +.+..-...++||-++. ..+.+..+++. +++..++..|.. ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999877 68888899999998876 45566666654 777777766531 1234567889
Q ss_pred HHHHhcccCcHHHHHHHHcC----cHHHHHHhc---C---CCHHHHHHHHHHHHHHhCC-cch-------HHHH----Hh
Q 004806 590 TALFNLSIYHENKARIVQAG----AVKHLVDLM---D---PAAGMVDKAVAVLANLATI-PDG-------RVAI----GQ 647 (729)
Q Consensus 590 ~aL~nLs~~~en~~~lv~~G----~V~~Lv~LL---~---~~~~v~e~Al~~L~nLa~~-~e~-------r~~i----~~ 647 (729)
++++|+..+......--..+ ++..|..++ . +.......++.+|.|+--. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999976332221111222 334444441 1 2244566777777777211 111 1111 11
Q ss_pred CCcHHHHHHHHcc----CC----HHHHHHHHHHHHHHhhCCHhhHHHHHh----------------CCCHHHHHHhhhCC
Q 004806 648 ENGIPVLVEVVEL----GS----ARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQSG 703 (729)
Q Consensus 648 ~g~I~~Lv~lL~s----~s----~~~ke~A~~aL~nL~~~~~~~~~~vl~----------------~G~v~~Lv~Ll~sg 703 (729)
...+..|+.+|.. .. .....--+.+|..++..+...+..+.. ...-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2247777777743 11 234445666777778776555544432 13567799999998
Q ss_pred CHHHHHHHHHHHHHhhcCc
Q 004806 704 TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 704 ~~rvr~~A~~lL~~L~~~~ 722 (729)
.+.+|..+.++|-.|....
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999998886543
No 114
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.31 E-value=0.026 Score=63.42 Aligned_cols=151 Identities=24% Similarity=0.150 Sum_probs=114.6
Q ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 486 GAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 486 GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.+++.|+..|. .++.++...++.+|. ..+. ..++..|+..|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 46888999994 566777665555553 2211 12389999999999999999999988754
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHH
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
...++.+.|+.+|.+.++.++..++.++.. ......+.|..+| +.+..+...|+.+|+.|..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 445788999999999999999888877766 2223456788888 5778889999999998764
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 644 ~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
...++.|...+.+.++.++..|+.+|..+.
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 245677888888899999999998886663
No 115
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.024 Score=67.59 Aligned_cols=134 Identities=21% Similarity=0.271 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhccChhhHHHHHh----cCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh
Q 004806 462 REATAELRLLAKHNMDNRMVIAN----CGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL 536 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~----~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL 536 (729)
..++.+|+++.+.+++....+.. .|-++.++.+|.. .+++++.-|+.++.-+..+.+.-..+++.+.+..|+.+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 45888999999888866555543 2888888888875 588999999999988888888888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhcc
Q 004806 537 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs 596 (729)
.+ -+..|+-++.+|..|+++.+....-.+.|++..+.+++ .+..++.+..|+..|..|.
T Consensus 1823 HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 76 47789999999999999887766666677766666554 3445666666666666554
No 116
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.21 E-value=0.0016 Score=66.95 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=110.3
Q ss_pred cCCCHHHHHHHHHHHHHhhccC--hhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCH
Q 004806 454 KSTSLDTQREATAELRLLAKHN--MDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAI 529 (729)
Q Consensus 454 ~s~~~evq~~Al~~L~~La~~s--~~nr~~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I 529 (729)
.+.+++.+.+|+..|+.+...+ ......+... ..+..++..+.+....+...|+.+|..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998876 2333333321 55566777777667778899999998887542222111233578
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCc-HHHHHHhhcCCCHHHHHHHHHHHHhcccCcH-HHHHHHH
Q 004806 530 EPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA-IGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQ 607 (729)
Q Consensus 530 ~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~-I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e-n~~~lv~ 607 (729)
+.|++.+.++...++..|..+|..+...-... ..+ ++.+...+.+.++.++..++..|..+..... ....+-.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 89999999988889999999999887643311 122 5666677788899999999998888765332 1111111
Q ss_pred ----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 608 ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 608 ----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
..+++.+..++ |.+..+++.|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34666777777 6888999999888888865
No 117
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.21 E-value=0.0014 Score=56.56 Aligned_cols=86 Identities=31% Similarity=0.430 Sum_probs=70.4
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc
Q 004806 488 INILVDML-HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 566 (729)
Q Consensus 488 I~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~ 566 (729)
|+.|+..| +++++.++..|+.+|.++- ...+++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 8889999999999998542 224599999999999999999999999976 34
Q ss_pred cCcHHHHHHhhcCC-CHHHHHHHHHHHH
Q 004806 567 SGAIGPLVDLLGNG-TPRGKKDAATALF 593 (729)
Q Consensus 567 ~g~I~~Lv~LL~~~-~~~v~~~Al~aL~ 593 (729)
..+++.|.+++.+. +..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56899999999876 4566888888874
No 118
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.055 Score=61.23 Aligned_cols=252 Identities=19% Similarity=0.140 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN---- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~---- 518 (729)
....+.|-..|++-...++.++++.+..|+..+. -..+. ..+|..|-.+|.+.....+-.|+++|..|+....
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 3566677777777667889999999999887541 11111 2467788889999999999999999999986321
Q ss_pred -----cHHHHHhcC---CHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhcc-------------CcHHHHHH
Q 004806 519 -----NKSAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRS-------------GAIGPLVD 575 (729)
Q Consensus 519 -----~k~~I~~~g---~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~-------------g~I~~Lv~ 575 (729)
.-..|-+.+ ..-.+..+|+.|+.+....-+..+-+...+ +..|..+++. ..+.-|..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 122222221 233455667776655444434433333221 1122211110 01111111
Q ss_pred h-hcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHH-------HHh
Q 004806 576 L-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVA-------IGQ 647 (729)
Q Consensus 576 L-L~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~-------i~~ 647 (729)
. ++.|.-+.++.++.+ +.++++..+...+.|+..|+..-..-+..+. +.+
T Consensus 420 ~L~~eGg~eFK~~~Vda----------------------isd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 420 SLLQEGGLEFKKYMVDA----------------------ISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred HHHhcccchHHHHHHHH----------------------HHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 1 112233333333333 3334433334444444444333221111110 011
Q ss_pred CC--------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 648 EN--------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 648 ~g--------~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+| .+..+...+--.+.-++..|+.+|...+.+-. ..+..+.+...|.+.+...++.+|..|.-+|+.|+
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 11 24555555545677788889999977766543 23334445667778888889999999999999998
Q ss_pred cCc
Q 004806 720 NQR 722 (729)
Q Consensus 720 ~~~ 722 (729)
..+
T Consensus 555 ~~d 557 (898)
T COG5240 555 LSD 557 (898)
T ss_pred hhh
Confidence 643
No 119
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.11 E-value=0.012 Score=62.26 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=156.4
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCccHHHHH-hcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhccCcchhhhhhcc-Cc
Q 004806 494 MLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS-GA 569 (729)
Q Consensus 494 LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~-~~g~I~~Lv~lL~s--~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~-g~ 569 (729)
+++.-++-++..|+.+|.++...++.|..+- +..+-..++.+++. |...++.+++-++|-|+........|-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333355578889999999988877776654 44566678888876 45889999999999998877766444332 67
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHhccc-Cc-HHHHHHHHcCcHHHHHHhc-C---CCHHHHHHHH---HHH----HHH
Q 004806 570 IGPLVDLLGNG-TPRGKKDAATALFNLSI-YH-ENKARIVQAGAVKHLVDLM-D---PAAGMVDKAV---AVL----ANL 635 (729)
Q Consensus 570 I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~-~~-en~~~lv~~G~V~~Lv~LL-~---~~~~v~e~Al---~~L----~nL 635 (729)
|..|+.+.+.. ...+.+.++.++.|++. .+ .....+.-.|-+..-+++| + .+.+++...- ..| ..|
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888875 56788899999999987 32 3344455555444555554 2 3333332111 111 111
Q ss_pred hCC---------------c---------chHHHHHhCC--cHHHHHHHHccCCHH-HHHHHHHHHHHHhhCCHhhHHHHH
Q 004806 636 ATI---------------P---------DGRVAIGQEN--GIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMVL 688 (729)
Q Consensus 636 a~~---------------~---------e~r~~i~~~g--~I~~Lv~lL~s~s~~-~ke~A~~aL~nL~~~~~~~~~~vl 688 (729)
|.. + .+...+.+.+ .+..|.++++...+. ....|+.-+.++.+..|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 111 1 1223444433 478888999876555 445678888999999999999999
Q ss_pred hCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 689 QEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 689 ~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.-|+-+.+..|+...++++|-.|..++..+
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999888765
No 120
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.1 Score=55.64 Aligned_cols=278 Identities=12% Similarity=0.160 Sum_probs=179.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHH--HHHHcCCCHHHHHHHHHHHHHh-hcCCcc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL--VDMLHSSETKIQENAVTALLNL-SINDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~L--v~LL~s~d~~v~e~Al~aL~nL-s~~~~~ 519 (729)
.+..+.++.++...+.++-..|...|..++.. +..-..|.+....+.+ .++--..+.-++...+..+..+ +.++..
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence 56788999999988999999999999999884 4455555554433332 2332233444556666666666 556666
Q ss_pred HHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--CHHHHHHHHH----HH
Q 004806 520 KSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAAT----AL 592 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~----aL 592 (729)
....-..|.+..|..=|+- .+.-++.+.......|+..+..+..+.+.|.|..+..++.-. ++--+..++. .+
T Consensus 206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 6666677888888877765 456678888899999999989999999999999998888643 3333333433 33
Q ss_pred HhcccCcHHHHHHHHc--CcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCc--HHHHHHH-HccCCHHHH
Q 004806 593 FNLSIYHENKARIVQA--GAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENG--IPVLVEV-VELGSARGK 666 (729)
Q Consensus 593 ~nLs~~~en~~~lv~~--G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~--I~~Lv~l-L~s~s~~~k 666 (729)
.++...+-.-+.+++. -+|...+++++ .+..+.+.|+.+|+.|.++.+|...+...|- ...++.- ....-..-+
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakq 365 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQ 365 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchH
Confidence 3333322112222221 12233333443 5677889999999999999999999988774 4444433 333334556
Q ss_pred HHHHHHHHHHhhCC---Hh----------hHHHHHhC-------CCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 667 ENAAAALLQLCTNS---SR----------FCSMVLQE-------GAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 667 e~A~~aL~nL~~~~---~~----------~~~~vl~~-------G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+.++.+|.+++..- ++ .+..+... .-...+..+++...++++-.|...+..+..+
T Consensus 366 eaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 366 EAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 77788888777532 11 11112111 2344566677888888888888777766554
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.07 E-value=0.0036 Score=53.90 Aligned_cols=85 Identities=29% Similarity=0.435 Sum_probs=68.5
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH
Q 004806 529 IEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 607 (729)
Q Consensus 529 I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~ 607 (729)
|+.|++.| +++++.+|..++.+|..+ ....+++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 67899988 888899999999999844 23367999999999999999999999999982 3
Q ss_pred cCcHHHHHHhcC--CCHHHHHHHHHHHH
Q 004806 608 AGAVKHLVDLMD--PAAGMVDKAVAVLA 633 (729)
Q Consensus 608 ~G~V~~Lv~LL~--~~~~v~e~Al~~L~ 633 (729)
..+++.|.+++. .+..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 448889999883 34455677777764
No 122
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.064 Score=61.48 Aligned_cols=268 Identities=15% Similarity=0.162 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH-HHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~-Al~aL~nLs~~~~~k~ 521 (729)
....+.+.+.+.......|..+...+..+.++. .-..+.+.+++..|...+.+.......+ +.-+......+-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--- 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--- 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence 567788888888888888999999999988864 4455667788999999888765444333 2222211111100
Q ss_pred HHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 522 AIANANAIEPLIHVLQ---TGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~---s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
...+...++.+-.+|. +....+|..|..+...+-. .+.+.. ...++.++.-+.....+.+..++..|..+..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1123344444444443 4456677766655554422 111111 1234444444444477888899999998887
Q ss_pred CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH------------------------HHHH------
Q 004806 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR------------------------VAIG------ 646 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r------------------------~~i~------ 646 (729)
...-.-...-..+||.|.+.| +....++..+..+|..++..-++- ..+.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 776666677788999999988 677788887777777775422111 1111
Q ss_pred --hCCcHHHHHHHHcc----CCHHHHHHHHHHHHHHhhCC--HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH-HH
Q 004806 647 --QENGIPVLVEVVEL----GSARGKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL-SY 717 (729)
Q Consensus 647 --~~g~I~~Lv~lL~s----~s~~~ke~A~~aL~nL~~~~--~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL-~~ 717 (729)
++..+..++-+|.. .+...+..++.+++|+|.-- +......+. -.+|.|-..+....|++|..|..+| ..
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 12234555555543 45667788999999999864 322222222 2577777777777899999988888 34
Q ss_pred hhc
Q 004806 718 FRN 720 (729)
Q Consensus 718 L~~ 720 (729)
+++
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 333
No 123
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.035 Score=62.74 Aligned_cols=270 Identities=15% Similarity=0.142 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
..+.|+.|-+.+..-++..+...+..|..|-... .+..+.-. ...+-|..+|.++..+++..+=.+|.++-..-.++
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888888899999999998876532 34444432 67788899999999998877766666653211111
Q ss_pred HHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHH-HHHHHHH---HHHhc
Q 004806 521 SAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR-GKKDAAT---ALFNL 595 (729)
Q Consensus 521 ~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~-v~~~Al~---aL~nL 595 (729)
...++ ...++.++.-+.+.++.++..|..-|..............-.|++..++.++.+.... ++..|.. .|..+
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 11112 2567888888999999999988777766655444444444457777777777766543 4443332 23344
Q ss_pred ccCcHHHHHHHHc-CcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 596 SIYHENKARIVQA-GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 596 s~~~en~~~lv~~-G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
+........ ++. ..+..|.+.+ ++....+-.++..+..|-....++-........+.|+.-|...++.+...+...|
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 443333333 343 3566677777 4556677788888888877777776666777889999999999999999999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.++|...... .. -..+..|+++...++--....+.-+++.|
T Consensus 402 a~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 402 ASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred HHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 9999876431 00 11233444444444443444444444443
No 124
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00036 Score=72.60 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=43.5
Q ss_pred cccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 142 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.|+||+.-|.-||.++|+|.||.-||+--...+..+||+||.++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999998777777899999999875
No 125
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.95 E-value=0.0026 Score=65.32 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---chhhhhhcc--CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcH
Q 004806 537 QTGSPEARENAAATLFSLSVIE---DNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 611 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~---e~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V 611 (729)
.+.+.+.+..|+..|..+.... .....+... ..+..++..+.+....+.+.|+.+|..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888999998888887643 222333221 45566777777777888999999999987643332222345577
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH---hhHH-H
Q 004806 612 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS---RFCS-M 686 (729)
Q Consensus 612 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~---~~~~-~ 686 (729)
+.|++.+ +....+.+.|..+|..++..-..-..+ .++.+...+.+.++.++..++..|..+....+ .... .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 8888888 456677888999999998854411111 14566667788999999999999988876654 1111 1
Q ss_pred HHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 687 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 687 vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..-...++.|..++.+.++.+|+.|..++..|....
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111336788899999999999999999998886543
No 126
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0069 Score=69.27 Aligned_cols=212 Identities=19% Similarity=0.175 Sum_probs=129.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc---c----h
Q 004806 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE---D----N 560 (729)
Q Consensus 488 I~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~---e----~ 560 (729)
..-|+.+..+.|..++..|+.+|+.|+..-.- ..-.....++++++....+|..|+.+++-++.-. . .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 33477777888889999999998888642111 1123556778888888889999988877665311 1 1
Q ss_pred hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cHHH-------------------------------------
Q 004806 561 KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENK------------------------------------- 602 (729)
Q Consensus 561 k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~en~------------------------------------- 602 (729)
...+. ..++..+...+++....++..|+.+|..+-.- .+..
T Consensus 275 e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 11111 25666677777777766666666666655321 1111
Q ss_pred -------------HHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHH
Q 004806 603 -------------ARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKEN 668 (729)
Q Consensus 603 -------------~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~ 668 (729)
..++..|+..+++.-|+ +--+++..|+..+..|+.+..+= ...++..|+.++...-..++..
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHH
Confidence 12233444555555553 33567889999999998854331 1124778899999888999999
Q ss_pred HHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 669 AAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 669 A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
|+.+|..++.+- .+++..++.++..+......+|+....+|
T Consensus 430 ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 430 AIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888762 12222344444444444444444444333
No 127
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.067 Score=61.32 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
..++..|+..+...+..+|+....+|..+..... .....-+.+.+.+++......-+..|...++-+..+. .-..
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~ 169 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIES 169 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhh
Confidence 4678999999999999999999999987765321 1112245677888888777777888888887775432 2334
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHHhcccCc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---~~~~~v~~~Al~aL~nLs~~~ 599 (729)
+.+.+.+..|...+.......+..++..-+.... .+-....+...++.+-.+|. +....++..|..+...+..
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~--~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-- 245 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ--GNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR-- 245 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH--HhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH--
Confidence 4566788888888876654433332211111100 00012223345555555444 4466777766665554422
Q ss_pred HHHHHHHHcCcHHHHHH-----hcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 600 ENKARIVQAGAVKHLVD-----LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~-----LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
.+...+|+.++. +++..+.....++.+|..|+.+...+-...-...+|.|.+.|-...+++++.+..+|.
T Consensus 246 -----~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 246 -----CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred -----hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence 122333333332 3344566678899999999999998888888899999999999999999999999999
Q ss_pred HHhhC
Q 004806 675 QLCTN 679 (729)
Q Consensus 675 nL~~~ 679 (729)
.++.-
T Consensus 321 ~~~sv 325 (569)
T KOG1242|consen 321 KFGSV 325 (569)
T ss_pred HHHHh
Confidence 99864
No 128
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.08 Score=61.86 Aligned_cols=270 Identities=13% Similarity=0.087 Sum_probs=173.1
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhc---
Q 004806 443 ETQVRKLVEDLKSTSLD-TQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS--SETKIQENAVTALLNLSI--- 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~e-vq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~--- 515 (729)
.+++..|+...-.+.+. ++..++..|..+|.+-. -....... .++..++.=... .+..++..|+.+|.|-..
T Consensus 128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 67888888888765544 67788999999988632 22333222 444555544333 467889999999988532
Q ss_pred ----CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHH
Q 004806 516 ----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590 (729)
Q Consensus 516 ----~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~ 590 (729)
++.+|..| ....++.-.+++.+++..|..+|..+.. +.+.-..-.....+..-+.-+++.++++...|..
T Consensus 207 ~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiE 281 (859)
T KOG1241|consen 207 ANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIE 281 (859)
T ss_pred HhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 12223222 3334555567788899999999887754 3333333333445566666777888888888887
Q ss_pred HHHhcccCcH----------------HHHHHH---HcCcHHHHHHhc-C-------CCHHHHHHHHHHHHHHhCCcchHH
Q 004806 591 ALFNLSIYHE----------------NKARIV---QAGAVKHLVDLM-D-------PAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 591 aL~nLs~~~e----------------n~~~lv---~~G~V~~Lv~LL-~-------~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
.-.++|..+- ....+. -.+++|.|+++| + +++.....|..+|..++.+-+ .
T Consensus 282 FWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D 359 (859)
T KOG1241|consen 282 FWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--D 359 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--c
Confidence 7777763110 001111 146788999988 1 223444555555555554211 1
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 644 ~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.|+. .+++.+-+-+++++-+.++.|+.++..+..+....+..-+..+++|.++.++.+.+-.+++.+.|.|..+...
T Consensus 360 ~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 360 DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 1111 3344444556778999999999999999888766666666677899999999977778888898888766543
No 129
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.77 E-value=0.0033 Score=45.94 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=35.7
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 477 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 477 ~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
+++..+.+.|+++.|+.+|.+++++++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999986
No 130
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.089 Score=61.12 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+..++.|++.|..+++.+|..|...|+.||+.++.|.-.+ -|.+..+|.. .+.=+....+....+|+.-+.-
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR- 252 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR- 252 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch-
Confidence 45678889999999999999999999999999888775544 4777777754 3444566667777777643221
Q ss_pred HHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHh--ccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 521 SAIANANAIEPLIHVLQTGS-PEARENAAATLFSL--SVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nL--S~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
.....+++|..++.+.. +.+.+.++.++... +.. .++-..+ .-++..|-.++.+.++.++..++.|+..+.
T Consensus 253 ---LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 253 ---LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred ---hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 12356899999998766 55666666665433 221 1221111 234666777778889999999999999887
Q ss_pred cCcH-HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 004806 597 IYHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAAL 673 (729)
Q Consensus 597 ~~~e-n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL 673 (729)
..+. ..+.. -+.++..| +.+..++-.|+.+|.-+..-. +..+| +..|+..+.. .....+..-+.-+
T Consensus 328 ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eI-----Vk~LM~~~~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 328 KTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEI-----VKTLMKHVEKAEGTNYRDELLTRI 396 (877)
T ss_pred hhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHH-----HHHHHHHHHhccchhHHHHHHHHH
Confidence 6443 22211 12455666 578889999999998887532 22222 4455554433 2334555556666
Q ss_pred HHHhhCCHhhHHHHHh-CCCHHHHHHhhhC-CCHHHHHHHHHHHHHh
Q 004806 674 LQLCTNSSRFCSMVLQ-EGAVPPLVALSQS-GTPRAKEKAQALLSYF 718 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~-~G~v~~Lv~Ll~s-g~~rvr~~A~~lL~~L 718 (729)
..+|+.+. -..|.+ +=.+..|+.|.+- |+......|..++...
T Consensus 397 I~iCS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 397 ISICSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred HHHhhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 67776653 123322 2245556665543 3445555555555444
No 131
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00068 Score=78.99 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=41.6
Q ss_pred CCcccccCccccccC-----ceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 138 PSDFCCPLSLELMTD-----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
..+-.|+||.+.|.. |-.++|||.|...|+.+|++.. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7889999999999999999985 7899999843
No 132
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.001 Score=69.20 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=49.1
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 204 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~ 204 (729)
|.|-||.+-|.+||++.|||+||..|-.+.++.+ ..|++|++.... .+-+...|......-.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~~~L~~kk 303 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELLVSLKLKK 303 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHHHHHHhhh
Confidence 7899999999999999999999999999999876 569999887543 4445555555444433
No 133
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.61 E-value=0.00094 Score=73.79 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=44.2
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhc----CCCCCCCCCccCCCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAHTT 189 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~~ 189 (729)
.+..|-+|.+.-+||+...|.|+|||.||.+|... .+-+||.|..+|+.+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 35789999999999999999999999999998763 3467999999888763
No 134
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.57 E-value=0.0017 Score=68.59 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=48.6
Q ss_pred CCCcccccCccccccC--ce--ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc----cHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTD--PV--IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP----NYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d--PV--~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p----N~~l~~~I~~~ 203 (729)
-...|.|||++..|.. +. +.+|||+|...+|.+-- ....||+|+.+|+..+++| +..+..+.+.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 3567999999999954 23 24999999999999983 2356999999999988774 23444444444
No 135
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.56 E-value=0.0092 Score=53.62 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHH--ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 004806 625 VDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQE 690 (729)
Q Consensus 625 ~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL--~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~ 690 (729)
+...+.+|+|||. ++..+..+.+.|+++.++... ...+|-.+|+|+++|.|||.+++++++.|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999998 777889999999999999886 44689999999999999999999988888764
No 136
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.027 Score=65.91 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 516 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~ 516 (729)
.+.....|.+.+++.++.++..|+..++++-.. +.......|+++.|-.++.+.++.+..+|+.+|..+...
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999888663 455667789999999999999999999999999998654
No 137
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.35 E-value=0.0081 Score=43.85 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=36.1
Q ss_pred CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 517 DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
++++..+.+.|++++|+.+|.+++.+++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888999999999999999999999999999999963
No 138
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.33 E-value=0.14 Score=54.50 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHH-HhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHHHhc-CCHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVI-ANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPL 532 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I-~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-g~I~~L 532 (729)
++-.+.-|..++.++... ++.|..+ ++...-..++.+|+. .+.++|.+.+-+++-|+.++.....|-.. ..+..|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 334566788888888884 4555544 444455667777765 36789999999999998887655444333 567777
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHhccCcchhhhh---hccCcHHHHHHhhcCC---CHHHHHHHHH---HHH----hccc-
Q 004806 533 IHVLQTGS-PEARENAAATLFSLSVIEDNKIKI---GRSGAIGPLVDLLGNG---TPRGKKDAAT---ALF----NLSI- 597 (729)
Q Consensus 533 v~lL~s~~-~e~r~~Aa~aL~nLS~~~e~k~~I---~~~g~I~~Lv~LL~~~---~~~v~~~Al~---aL~----nLs~- 597 (729)
+.+.+... ..+-.-.++++.|+.. ...|..| +-.|-+.+.+++|..+ +.+++..--. .|. .||.
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 78777654 4466667777778765 2233333 3345566677776543 3333221110 110 1111
Q ss_pred -----------------------CcHHHHHHHH--cCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCC
Q 004806 598 -----------------------YHENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQEN 649 (729)
Q Consensus 598 -----------------------~~en~~~lv~--~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g 649 (729)
.+.|...+.+ ...+..|..++. .......-|+.=+..+.. .++++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 1234444544 346777888883 222233445555555554 889999999999
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
+-..+++++.+.+++++..|+.++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999876543
No 139
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.28 E-value=0.14 Score=58.49 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh--hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCcc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM--DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~--~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~ 519 (729)
...|..++..|++..++++..|+.....|++--. .....+...|.| |..-|..+.+++.-..+.|++.+.. ..-.
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 5678899999999999999999988888776311 011223333332 4455667788888777777766532 1111
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
+-+--..|.+|.|..+|++....+..+....+..++.......-..+ ...-=.|+++|++.+.+++++|...+.-++.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11111257899999999999999999999998888764332211111 1333458888999999999988877777653
No 140
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=0.051 Score=65.21 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=129.6
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHh-cccCcHHHHHHHHcCcHHHHHHhcCC----CHHHHHHHHHHHHHHhC-Ccc
Q 004806 567 SGAIGPLVDLLGNGTPRGKKDAATALFN-LSIYHENKARIVQAGAVKHLVDLMDP----AAGMVDKAVAVLANLAT-IPD 640 (729)
Q Consensus 567 ~g~I~~Lv~LL~~~~~~v~~~Al~aL~n-Ls~~~en~~~lv~~G~V~~Lv~LL~~----~~~v~e~Al~~L~nLa~-~~e 640 (729)
-|.+|.+++||++...+++-.-+.+=.. |+.++..+..+++.++-...+..|++ +.+-+..|+.+|+.++. ..-
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 3999999999999988777655444444 45677788889998887777777754 24567788899999988 778
Q ss_pred hHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 641 GRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
|+.+..+.+.+...++.|..+ .+-.+..++-+|..|-.+.+.++-.=.+.++..+|..++...-++||..|.-+|..|-
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 899999999999999999885 6889999999999999998888877788899999999999999999999999998875
Q ss_pred cC
Q 004806 720 NQ 721 (729)
Q Consensus 720 ~~ 721 (729)
..
T Consensus 671 ~~ 672 (1387)
T KOG1517|consen 671 SN 672 (1387)
T ss_pred cc
Confidence 53
No 141
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0029 Score=68.40 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=38.9
Q ss_pred ccccCccccccCc--e-ecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 141 FCCPLSLELMTDP--V-IVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 141 f~CpI~~~lm~dP--V-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
+.|-||+|-|++= | ++||+|.|=..||..|+......||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 7999999988753 3 5899999999999999998767799998843
No 142
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.13 Score=60.57 Aligned_cols=268 Identities=18% Similarity=0.197 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC---------------CCHHHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS---------------SETKIQENAV 507 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s---------------~d~~v~e~Al 507 (729)
+.++....++|.+.+..+...++..+..+++.+++.-..+.+ .++-|+..|+. .||.+|...+
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 556666677777777788888889999999988877777665 66666666641 3799999999
Q ss_pred HHHHHhhcCCcc-HHHHHh-------------c-C------CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhh-hh
Q 004806 508 TALLNLSINDNN-KSAIAN-------------A-N------AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK-IG 565 (729)
Q Consensus 508 ~aL~nLs~~~~~-k~~I~~-------------~-g------~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~-I~ 565 (729)
+.|.-|-.++.. ...+.+ + | +|..+..+ ..+..++..|+.+|...-.+.++... ++
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeee
Confidence 999888665432 222210 0 0 11111111 12345666677666654443332211 10
Q ss_pred ----------ccCcH----HHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHH
Q 004806 566 ----------RSGAI----GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVA 630 (729)
Q Consensus 566 ----------~~g~I----~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~ 630 (729)
+..++ ..++++|++.+..+++.|+..++.|... .|...| ++.|+.+| ..+.........
T Consensus 334 Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~m-----v~eLl~fL~~~d~~~k~~~as 407 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVRVM-----VKELLEFLESSDEDFKADIAS 407 (866)
T ss_pred hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 01111 2567788888889999999888887543 333333 34566666 345566655555
Q ss_pred HHHHHhC--CcchH------HHHH-------hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC---------------
Q 004806 631 VLANLAT--IPDGR------VAIG-------QENGIPVLVEVVELGSARGKENAAAALLQLCTNS--------------- 680 (729)
Q Consensus 631 ~L~nLa~--~~e~r------~~i~-------~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~--------------- 680 (729)
-+..++. .++.+ -.+. +..++..++.++.++.+...+.++..|+.-...+
T Consensus 408 ~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 408 KIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 5555554 22222 1111 1234666676665553333333333332211111
Q ss_pred ---HhhHHHHH------------hCCCHHHHHHhhhCCC--HHHHHHHHHHHHHhhc
Q 004806 681 ---SRFCSMVL------------QEGAVPPLVALSQSGT--PRAKEKAQALLSYFRN 720 (729)
Q Consensus 681 ---~~~~~~vl------------~~G~v~~Lv~Ll~sg~--~rvr~~A~~lL~~L~~ 720 (729)
+++-+.++ +..++..|..++.+.. ..++..|..+|--|..
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 11222222 2346777888877664 5677777766655544
No 143
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.056 Score=62.13 Aligned_cols=216 Identities=19% Similarity=0.166 Sum_probs=137.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---C---
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---D--- 517 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~---~--- 517 (729)
....-|+.+..+.+..++..|+..|..|.....-.+ -.....+.++.+++..++..|+.+++-.+.- +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344448888888888899999999888866432211 2345678888888899998887776555421 1
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC----------------------------------------
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---------------------------------------- 557 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---------------------------------------- 557 (729)
.+-..-....++..+++.+++.+..+|..|+.+|..+-..
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 1111111224566677777777766666666655543211
Q ss_pred -----------cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHH
Q 004806 558 -----------EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMV 625 (729)
Q Consensus 558 -----------~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~ 625 (729)
++....|+..|+-..+|.=|.++-.+++++|+..++.|+.+... ....++..|++++ ++...++
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHH
Confidence 01112244445566666666666678999999999999874332 1123567899999 4556777
Q ss_pred HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 626 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 626 e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
..|+.+|..++.+-. +++.-++.+++.|...+..+++..-..|.
T Consensus 428 L~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 889999998887522 23334667777777777777775444443
No 144
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0033 Score=63.63 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=46.9
Q ss_pred CcccccCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
..|.||+|.+.+.+-+ +-+|||.|+..|.++.+..+ ..||+|+.+++.+++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEe
Confidence 5699999999988865 34899999999999999875 67999999999999987
No 145
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.16 E-value=0.0046 Score=53.29 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=34.6
Q ss_pred cccccCccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCccCC
Q 004806 140 DFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 186 (729)
+-.||.|..-=.| |++. .|||.|-..||.+|+... ...||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3445555544334 6554 799999999999999853 467999999864
No 146
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.16 E-value=0.067 Score=51.93 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=98.1
Q ss_pred hhhccCcHHHHHHhhcCCC------HHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC---CCHHHHHHHHHHHH
Q 004806 563 KIGRSGAIGPLVDLLGNGT------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVLA 633 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~~~~------~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~---~~~~v~e~Al~~L~ 633 (729)
.+...+++..|+.++.++. ......++.++..|....-..+..+....|..++.++. .+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 4556789999999999876 36777889999999887666777888888889988883 36788899999999
Q ss_pred HHhCCcchH-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 634 NLATIPDGR-VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 634 nLa~~~e~r-~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
++..+.... ..+.++=-++.|+..|+..++..+.+|+..+-.|....++
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999977774 4444555699999999999999999999999888776543
No 147
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.11 E-value=0.034 Score=55.93 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHHc----------------CcHHHHHHhc-C------CCHHHHHHHHHHHHHH
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQA----------------GAVKHLVDLM-D------PAAGMVDKAVAVLANL 635 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~~----------------G~V~~Lv~LL-~------~~~~v~e~Al~~L~nL 635 (729)
+........++.+|.||+..+..+..+++. ..+..|++++ . ....-.+....+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 334445667888999999988888766652 2556677766 3 1234567899999999
Q ss_pred hCCcchHHHHHhCC--c--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCCHHHHHHhhh
Q 004806 636 ATIPDGRVAIGQEN--G--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQ 701 (729)
Q Consensus 636 a~~~e~r~~i~~~g--~--I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~--~G~v~~Lv~Ll~ 701 (729)
+..++||..+.+.. . +..|+-++.+.+..-+.-++.+|.|+|.....+...+-. .+++|.|+.-+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999998643 4 778888888888888999999999999987755444433 367777777666
No 148
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.05 E-value=0.0024 Score=62.49 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=40.9
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
|.|-||.+=++.||++.|||.||-.|-.+-++.+ .+|-+|+.....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcc
Confidence 9999999999999999999999999988888776 569999876543
No 149
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.03 E-value=0.21 Score=59.71 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH-HHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~-Al~aL~nLs~~~~~k 520 (729)
...++..|++.|...+.++|..|.++|.-|+..-++.+.. -.+.-|..-+-++-...+.- ++.....++.-+...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 4678999999999999999999999999988643322211 12333433322222332222 222222222212222
Q ss_pred HHHHhcCCHHHHHHHhcCC-----C-HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 521 SAIANANAIEPLIHVLQTG-----S-PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~-----~-~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
.......+++.+...|... + ..++..++..|..+-. ....-.. ...+.+..++.-|.+....+++.|+.+|.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~ 199 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALG 199 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 2222334444444444322 2 3366666666554322 1111111 22355666666677778889999999999
Q ss_pred hcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH---ccCCHHHHHH
Q 004806 594 NLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV---ELGSARGKEN 668 (729)
Q Consensus 594 nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL---~s~s~~~ke~ 668 (729)
.|+..-. ..+-.+++..|++-|. .....+.--+.+|+.+|.....|-----...++.+..+. +..+++.+|.
T Consensus 200 ~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~ 276 (1233)
T KOG1824|consen 200 HLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREY 276 (1233)
T ss_pred HHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHH
Confidence 9976322 1233446666777663 233344445566666665433332222234588888888 6678999999
Q ss_pred HHHHHHHHhhCCHh
Q 004806 669 AAAALLQLCTNSSR 682 (729)
Q Consensus 669 A~~aL~nL~~~~~~ 682 (729)
++.+|-.+....+.
T Consensus 277 ~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 277 CLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHhChh
Confidence 99998887776653
No 150
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.092 Score=62.94 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcc-Ccchhhhhhcc----CcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHH
Q 004806 543 ARENAAATLFSLSV-IEDNKIKIGRS----GAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 616 (729)
Q Consensus 543 ~r~~Aa~aL~nLS~-~~e~k~~I~~~----g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~ 616 (729)
-.+.++.+|.||.. +++....++.. |.++.+..+|+. +++++++.|+..+.-++.+.+....++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34567788888865 56555544432 788888888875 4789999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCC
Q 004806 617 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 617 LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+|.+-+..++.++.+|..|+++.+-..+..+.|++.-+..++ .+.++..+..|+..|..|.+..
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 998888999999999999999888776677777766666665 5678899999999999988753
No 151
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.84 Score=56.14 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=129.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHH
Q 004806 496 HSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIG 571 (729)
Q Consensus 496 ~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~--g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~ 571 (729)
++.+..+|..+..+|..++..+......... .....|..-+++.....+...+.+|..|-.. .+....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 4457889999999999987664443333221 1222333344444445566666666555331 1222222 24556
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcC------cHHHHHHhc-----CCCHHHHHHHHHHHHHHhC-Cc
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLM-----DPAAGMVDKAVAVLANLAT-IP 639 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G------~V~~Lv~LL-----~~~~~v~e~Al~~L~nLa~-~~ 639 (729)
.++-.++..+...++.|..+|..|+. .....+.| .|...+.++ .....++...+-++..+.. ..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 65555678889999999999998873 11122222 333333333 1122222221333333332 11
Q ss_pred chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 640 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..-....-.+.+..+..+|.+.++.+...|+..+..++...++.+-.-..+-.++.+..+++..+..+|.+...+|..|-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11111111234566666778899999999999999999988864444444458999999999999999999998887775
Q ss_pred c
Q 004806 720 N 720 (729)
Q Consensus 720 ~ 720 (729)
+
T Consensus 898 r 898 (1176)
T KOG1248|consen 898 R 898 (1176)
T ss_pred H
Confidence 4
No 152
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.00 E-value=0.36 Score=56.41 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh--HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-c
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN--RMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-N 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~n--r~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~-~ 519 (729)
...+..++..|++.++.++.+|+..+..++.--... -..+...|.| |..-|..+.+++.-..+.+|..+...-. .
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 456778888899999999999999999888742111 1233344443 5677778889887666666655531100 0
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
+..---.+.+|.|.-+|++.+..++++....+..++.. ++.-..=-....-=.|+++|+..+..++++|..++..++.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 00001247789999999999999999999999988763 2311111111333457888888899999988887777653
No 153
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0043 Score=62.82 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=33.5
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhc
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL 173 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~ 173 (729)
|-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5556689999999999999999999999999999864
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.17 Score=59.59 Aligned_cols=241 Identities=15% Similarity=0.166 Sum_probs=159.9
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCccHHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHH
Q 004806 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLF 552 (729)
Q Consensus 475 s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~-nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~ 552 (729)
...-|...++.|+...|+.+.....+.....+..+|. .+... ..+ ....++++...+.... ---...++.+|.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4456667778899999999998877787888888886 22221 110 1134555555554432 123456788999
Q ss_pred HhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHH-HH-cCcHHHHHHhcCC-CHHHHHHH
Q 004806 553 SLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQ-AGAVKHLVDLMDP-AAGMVDKA 628 (729)
Q Consensus 553 nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l-v~-~G~V~~Lv~LL~~-~~~v~e~A 628 (729)
||+.. +..|..|...-+++.+-.++...++..++.++..+.||...+..-.+. ++ ...++.....++. .......+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 99884 555777877766666667788889999999999999999887765544 44 4455665555542 23333445
Q ss_pred HHHHHHHhCCcchH-H-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHH
Q 004806 629 VAVLANLATIPDGR-V-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706 (729)
Q Consensus 629 l~~L~nLa~~~e~r-~-~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~r 706 (729)
++++..++...++. . ...-..+...++.++.+.++.++...+.+.+|+.....+....+.....++.+..+-+-....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 56666555533332 2 233345678889999999999999999999997766666666666666666665554444456
Q ss_pred HHHHHHHHHHHhhc
Q 004806 707 AKEKAQALLSYFRN 720 (729)
Q Consensus 707 vr~~A~~lL~~L~~ 720 (729)
.++.|...|...-.
T Consensus 728 ~~~~~~~~l~~a~~ 741 (748)
T KOG4151|consen 728 KREDAAPCLSAAEE 741 (748)
T ss_pred hhhhhhhHHHHHHH
Confidence 66666666655443
No 155
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.90 E-value=0.0072 Score=62.04 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=47.1
Q ss_pred cccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCcc----CCCCCCcccHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQT----LAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~----l~~~~l~pN~~l~~~I~~ 202 (729)
+++|||+......||+- .|||.|+|..|+.++... ...||+-+.. +....+.+...|+..|++
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 47999999999999985 799999999999998752 3459997766 223355555555555544
No 156
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0059 Score=65.19 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=39.6
Q ss_pred CCcccccCccccccC-c------------eecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTD-P------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-P------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-+|=.|-||.+=|-. | =.+||||.+--.|++.|+++. .|||.||.|+-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 356789999976433 3 579999999999999999986 68999999953
No 157
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.4 Score=56.00 Aligned_cols=241 Identities=13% Similarity=0.103 Sum_probs=152.4
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHH
Q 004806 452 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIE 530 (729)
Q Consensus 452 ~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~ 530 (729)
.+++.+...---|+..|..+...+ -. .+.-+-++.||.+.-+-++..|+.+|..+.. .++. -..++|
T Consensus 117 dl~S~n~ye~giAL~GLS~fvTpd-LA------RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~Fp 184 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCIVTPD-LA------RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFP 184 (877)
T ss_pred HhccCccchhhheecccccccCch-hh------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHH
Confidence 345555444444555555544422 11 2445678899999999999999999988753 2321 125689
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcHHHHHHHHc
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQA 608 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~en~~~lv~~ 608 (729)
.|..-|.++++.++-.|+.+++.|+. ++.+-..+ -|.+.++|... +.=+...-+..+.+|+-...- +..
T Consensus 185 rL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgK 255 (877)
T KOG1059|consen 185 RLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGK 255 (877)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhh
Confidence 99999999999999999999999997 55554433 46777777643 333444556677777764331 334
Q ss_pred CcHHHHHHhcCCC--HHHHHHHHHHHH--HHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH
Q 004806 609 GAVKHLVDLMDPA--AGMVDKAVAVLA--NLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684 (729)
Q Consensus 609 G~V~~Lv~LL~~~--~~v~e~Al~~L~--nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~ 684 (729)
.+++.|.+++... ..+.-.++.++- +|...-....+-++ -+++.|-.++...++..+.-++-++.-+..-.+...
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 5777888888532 223333332221 22221111111111 136677777788899999999999988888776533
Q ss_pred HHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 685 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 685 ~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+.- -..+++.+.+.++.+|-.|..+|.-|.
T Consensus 335 qa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 335 QAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 322 345666777777777777877776554
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.79 E-value=0.41 Score=51.95 Aligned_cols=178 Identities=18% Similarity=0.227 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC---cchhhhhhccCcHHHH
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPL 573 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~L 573 (729)
....++.|+..|.++.........+.. ...+..+.+.++.|..+-+..|+.++.-|+.. ......+. ....+.|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L 134 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVL 134 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHH
Confidence 455666667666665433222222222 23567788888888876666777776666553 12233333 3677888
Q ss_pred HHhhcCCC--HHHHHHHHHHHHhccc----CcHHHHHHHHcCcHHHHHH--hcC-----------CCHHHHHHHHHHHHH
Q 004806 574 VDLLGNGT--PRGKKDAATALFNLSI----YHENKARIVQAGAVKHLVD--LMD-----------PAAGMVDKAVAVLAN 634 (729)
Q Consensus 574 v~LL~~~~--~~v~~~Al~aL~nLs~----~~en~~~lv~~G~V~~Lv~--LL~-----------~~~~v~e~Al~~L~n 634 (729)
...+.++. ..++..++.+|.-++. ..+..... ...+..+.. .++ ++..++..|+..++.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence 88888763 4555566666665543 11221111 112221111 121 124678889999998
Q ss_pred HhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 635 LATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 635 La~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
|.+.-+. .-.-.-...++.|+.+|.+.+..++..|..+|.-|...
T Consensus 213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8874443 21111234689999999999999999998888766543
No 159
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.79 E-value=0.0037 Score=67.62 Aligned_cols=34 Identities=15% Similarity=0.447 Sum_probs=30.3
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWI 171 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~ 171 (729)
.+++.||||+..|+||++++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 4789999999999999999999999999976443
No 160
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.69 E-value=0.54 Score=48.55 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCcch--hhhhhccCcHHH
Q 004806 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGP 572 (729)
Q Consensus 500 ~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~-----~~e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~ 572 (729)
..-..+|+..|--++.+++.|..+..+..---|-.+|..+ ..-+|..++++|..|..+++. -..+...+++|-
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3344667777766788899999999887666666666543 356899999999999885443 445566799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH----cCc----HHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 573 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AGA----VKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 573 Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~----~G~----V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
++..+..|+...+..|..++..+-.++.+-..+.. --+ +..++.-+ .++..+...++.+..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999988776654433332 122 22233223 367788889999999999999888
Q ss_pred HHHHh---CCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 643 VAIGQ---ENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 643 ~~i~~---~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
.++.. .+.-..-...+...++..+..-...+.|+|.
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 88754 1111112222333455555555555555553
No 161
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.65 E-value=0.32 Score=58.24 Aligned_cols=265 Identities=16% Similarity=0.152 Sum_probs=141.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc
Q 004806 448 KLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~-~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~ 526 (729)
.|++.+.+.+.+.+..|+.-|. .|-+++ .+-..=.+...+..|+++|.+.+.++|..|+.+|+-|+.- .+..-. .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~l-e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQL-E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHH-H
Confidence 7888999988899988887664 333321 1111112346788999999999999999999999988621 111000 0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHH-HhccCcchhhhhhccCc----HHHHHHhhcC-C-CHHHHHHHHHHHHhccc-C
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRSGA----IGPLVDLLGN-G-TPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~-nLS~~~e~k~~I~~~g~----I~~Lv~LL~~-~-~~~v~~~Al~aL~nLs~-~ 598 (729)
..++.|+.-+-++....+..+.-.|. .++..+..-.......+ .+.|...+.. + ...++-.++..|..+-. .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 12333333333344444443332222 22222211111111223 3333333322 2 23355555555554321 1
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL 676 (729)
..--.. ...+....++.-+ .+...++.+|+.+|+.|+..-.+ ... .+.+..|++-|.. .......--+.+|..+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~-~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR-DLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH-HHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 110000 1233334444444 34567788999999999873221 111 1234444444432 3444555567778888
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhh---hCCCHHHHHHHHHHHHHhhcC
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALS---QSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll---~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|+..+. +-----...+|.+.... ..++++.|+...+.|..|-..
T Consensus 241 ~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 241 CRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 876542 11111124678888887 667789999999998887553
No 162
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.64 E-value=0.17 Score=60.21 Aligned_cols=143 Identities=19% Similarity=0.231 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+....+.+++...+.+.++++-.=..|..+++..+ . .++. ++..+..=|+++++.++-.|++.|..|-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~-~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-E-LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-H-HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 45677888888888888888877778888888765 2 2222 467777778899999999999999776321
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
-.-..+++++.+++.++++.+|.+|+-++.++= .-.+....+.|.+..+..++.+.++.+...|+.+|..+..
T Consensus 123 -el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly--~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 123 -ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY--RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH--hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 112346889999999999999999999999873 2334445556899999999999999999999999998854
No 163
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.63 E-value=0.02 Score=45.08 Aligned_cols=55 Identities=27% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 541 PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 541 ~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
+.+|..|+.+|.+++........-....+++.|+.+|++.+..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999886555444445568999999999999999999999999885
No 164
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.56 E-value=0.58 Score=48.34 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCC--ccHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSIND--NNKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----~d~~v~e~Al~aL~nLs~~~--~~k~~I~~~g~I~~Lv~ 534 (729)
..|+..|.-++.+ ++.|..+.++-.--.|-.+|.. +.+-++..++.+|+.|..++ +.-..+...++||..++
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 5678888888885 5788888888766667777743 35678899999999997653 33455667899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHH-HHhhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPL-VDLLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~L-v~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.+..|+...+.-|+.++-.+-.++..-.-|... ..+..+ ..+.+.++.++.++++++..+|+.++..+..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999888877766654433321 233333 34556679999999999999999999877755
Q ss_pred HH
Q 004806 606 VQ 607 (729)
Q Consensus 606 v~ 607 (729)
..
T Consensus 256 ~~ 257 (293)
T KOG3036|consen 256 RS 257 (293)
T ss_pred Hh
Confidence 43
No 165
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.50 E-value=0.26 Score=58.78 Aligned_cols=167 Identities=20% Similarity=0.171 Sum_probs=117.4
Q ss_pred hcCCCHHHHHHHHHHH-HHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHH
Q 004806 453 LKSTSLDTQREATAEL-RLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 531 (729)
Q Consensus 453 L~s~~~evq~~Al~~L-~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~ 531 (729)
+.+.+...+..|++.+ +.++.+.. - .-..+-+++...+.|.+++.-.-.-|.+.+........+ ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 5566666777777654 34444332 1 123455666666778888777666666666543322222 3666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcH
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 611 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V 611 (729)
+.+=|.++++.+|..|.++|..|=. +.. ...+++++.+++.++++.+++.|+.|+.+|=. -.+....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~----~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRV----KEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcCh----HHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHH
Confidence 7778889999999999999887621 111 12568889999999999999999999999843 344556788999
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 612 KHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 612 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
..+..++ ++++.++..|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999998 67888889999999887653
No 166
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.50 E-value=0.052 Score=48.86 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhcC-CccHHHHHhc
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH--SSETKIQENAVTALLNLSIN-DNNKSAIANA 526 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~--s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~ 526 (729)
+...++.|.+|++.++.++..+.+.|+|+.+++.-. ..+|.+++.|+.+|.||+.+ ++|+..|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 455678899999999999999999999999999764 45899999999999999864 7788777654
No 167
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.46 E-value=0.046 Score=50.49 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
-..++.|++.|. +.++.+..-|+.-|..+++..+..|..+.+.|+-..+..++.++|++|+.+|+.++-.|.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 568999999994 556677778999999999999999999989999999999999999999999999987663
No 168
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.01 Score=61.30 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=40.9
Q ss_pred CCcccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~ 186 (729)
-.+-.||+|++--.-|.++ +|||.||.-||..-+.-. ..+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999999999987 599999999999977643 357999998754
No 169
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.32 E-value=0.029 Score=44.16 Aligned_cols=55 Identities=24% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004806 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 554 (729)
Q Consensus 500 ~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL 554 (729)
+.++..|+++|.+++........-.....++.|+.+|++.+..+|..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999876655444445567899999999999999999999999875
No 170
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.97 Score=53.23 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=118.8
Q ss_pred hhhHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004806 440 SGIETQVRKLVEDLKST-------SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 512 (729)
Q Consensus 440 ~~~~~~V~~Lv~~L~s~-------~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~n 512 (729)
.+...++|.|++.|... +......|-.+|..++.. .+..|+. -++|++-.-++++|..-++.|+.+++.
T Consensus 315 ~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 315 QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 34578899999998641 233456677788777763 1222222 233333334567888889999999988
Q ss_pred hhcCCc-cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc----CcHHHHHHhhcCCCHHHHHH
Q 004806 513 LSINDN-NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS----GAIGPLVDLLGNGTPRGKKD 587 (729)
Q Consensus 513 Ls~~~~-~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~----g~I~~Lv~LL~~~~~~v~~~ 587 (729)
+-..++ .+..-...+++|.++.++.++..-++..++++|..++..-. ..+... ..+..|+.-|. ..|++..+
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~-DePrva~N 467 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLN-DEPRVASN 467 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhh-hCchHHHH
Confidence 876644 44444567899999999998888889999999998876311 222222 33344433333 35788999
Q ss_pred HHHHHHhccc--CcHHHHH----HHH---cCcHHHHHHhcC----CCHHHHHHHHHHHHHHhC
Q 004806 588 AATALFNLSI--YHENKAR----IVQ---AGAVKHLVDLMD----PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 588 Al~aL~nLs~--~~en~~~----lv~---~G~V~~Lv~LL~----~~~~v~e~Al~~L~nLa~ 637 (729)
++|++.+|+. ....... ... .-.|..|++.-+ ....++..|..+|..|..
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 9999999973 1111111 111 112233333322 235677788888888876
No 171
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.25 E-value=1.1 Score=51.24 Aligned_cols=271 Identities=11% Similarity=0.077 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCcHHH--HHHHHcC-CCHHHHHHHHHHHHH-hhc-
Q 004806 442 IETQVRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAINI--LVDMLHS-SETKIQENAVTALLN-LSI- 515 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~-evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~--Lv~LL~s-~d~~v~e~Al~aL~n-Ls~- 515 (729)
..+.+..+++....+.+ ...+.++..+...+.. ..-...+...+.|-. ....++. .+..++..|+.+|.+ |-.
T Consensus 131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 36778888888775544 4567888888877763 223344444444322 2334443 467788899999988 321
Q ss_pred -----CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHH
Q 004806 516 -----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 589 (729)
Q Consensus 516 -----~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al 589 (729)
++.++..+ +...++.-+..+.+++..|..+|..+-. +...-..+.+..........+++.+.++...|+
T Consensus 210 ~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qav 284 (858)
T COG5215 210 QGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAV 284 (858)
T ss_pred HHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 22233332 3334555566778899888888887644 333333444444445556677888888888777
Q ss_pred HHHHhcccCc-----------------HHHHHHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 590 TALFNLSIYH-----------------ENKARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 590 ~aL~nLs~~~-----------------en~~~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
..-..+|... .+-.+..-+.++|.|+.||. ++..+-..|..+|...+.... ..
T Consensus 285 EfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~ 362 (858)
T COG5215 285 EFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DK 362 (858)
T ss_pred HHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hH
Confidence 6554444311 01111222458899999981 123333344444444332110 11
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|.+. ++..+-.-+++.+...++.|+.++..+..+..+.+..-+-..++|.|..++.+.+-.++..++|++..+..+
T Consensus 363 i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 363 IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 1111 233333445678899999999999999988765554444445788898888877778999999988877654
No 172
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0081 Score=63.44 Aligned_cols=53 Identities=23% Similarity=0.373 Sum_probs=43.2
Q ss_pred CCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
.|+.=.||+|+.--.+|-++. +|..||-.||-.|..+ ...||+|+.|..-.++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 355668999998888888775 6999999999999995 4679999988765443
No 173
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.24 E-value=0.64 Score=48.67 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHH-hcCcHHHHHHHH-------cCC--CH---HHHHHHHHHHHHhhcCCccHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIA-NCGAINILVDML-------HSS--ET---KIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~-~~GaI~~Lv~LL-------~s~--d~---~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
+++.+..|+.+|..--...++---.+- ..|.+..|+.=+ ..+ .+ .-..+|+..|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567788787777654333222222222 348888776532 222 12 22345566665667899999999
Q ss_pred HhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCc--chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 524 ANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
.++...--|..+|+..+ ..+|..+.+++..|...+ +.-..+...+.+|..+..+..|+.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99986666666665443 458999999999998743 34455667799999999999999999999999999887
Q ss_pred cCcHHHHHHHH--------cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHh
Q 004806 597 IYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ 647 (729)
Q Consensus 597 ~~~en~~~lv~--------~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~ 647 (729)
.++.+-..+.+ ..++..++.-+ +++..+....+.+-..|+.++.+|.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77665544432 22333344333 57788889999999999999988888764
No 174
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.015 Score=60.76 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=37.7
Q ss_pred ccccCcccccc--Cce-ecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMT--DPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~--dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.-|-||..=|. |-+ ++||.|.|-+.||.+|+..-...||+||.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46999986542 334 589999999999999998655679999988754
No 175
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.17 E-value=0.086 Score=53.09 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHh----------------cCCHHHHHHHhcCC------CHHHHHHHHHHHHHhcc
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIAN----------------ANAIEPLIHVLQTG------SPEARENAAATLFSLSV 556 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~----------------~g~I~~Lv~lL~s~------~~e~r~~Aa~aL~nLS~ 556 (729)
.......++.+|.||+..+.....+.. ..++..|+..+..| ...-..+.+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 334556677888888776665554332 23677777777652 23456688999999999
Q ss_pred Ccchhhhhhcc--Cc--HHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcC
Q 004806 557 IEDNKIKIGRS--GA--IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG 609 (729)
Q Consensus 557 ~~e~k~~I~~~--g~--I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G 609 (729)
.++.|..+.+. +. +..|+.++.+.+.--+.-++.+|.|+|...+....+....
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDD 144 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCch
Confidence 99999999875 44 7788888888877777788889999999888887777643
No 176
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=1.9 Score=51.02 Aligned_cols=259 Identities=20% Similarity=0.227 Sum_probs=149.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc----
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN---- 518 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~---- 518 (729)
...+.+=..|++-...+..+|++.+..|...+. |. +. .++..|-.+|.+...-++..|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 456666677777777889999999999977543 22 22 3888888999999999999999999999752 21
Q ss_pred -c---HHHHHhc---CCHHHHHHHhcCCCHHHHHHHHHHHHHhcc--Ccchhhhhhc-------------cCcHHHHHHh
Q 004806 519 -N---KSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR-------------SGAIGPLVDL 576 (729)
Q Consensus 519 -~---k~~I~~~---g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~-------------~g~I~~Lv~L 576 (729)
| -..|-.. -.-..+.-+|+.|.......-...+.+... .+++|..+++ .+.+.-|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 1222222 234456677777765544333333333222 2333332221 1334444444
Q ss_pred hcC-CCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 577 LGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 577 L~~-~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
|+. +.-+.+++.+.++..+.. +++.+.. ++..|...+. +......+..+|..|.. +|-.+.....-+..+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIE-Dce~~~i~~rILhlLG~--EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIE-DCEFTQIAVRILHLLGK--EGPKAPNPSKYIRFI 471 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHH-hccchHHHHHHHHHHhc--cCCCCCCcchhhHHH
Confidence 443 334455555555554433 3333332 2233444442 11223344444444432 111111112235555
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 655 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 655 v~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
...+--.+..++..|+.+|..+..+++. ....+.-.|.+.+.+.+..+|+.|.-.|+.+..
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 5666567788889999999998865542 233345566777778889999999999999984
No 177
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.07 E-value=0.22 Score=48.35 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=95.3
Q ss_pred HHHHHcCcHHHHHHhcCC-C------HHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHH
Q 004806 603 ARIVQAGAVKHLVDLMDP-A------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAAL 673 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL~~-~------~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL 673 (729)
..++..|++..|+++++. . ..+...++.++..|-.+.-.-=.......|..++.++... +..+...|..+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 467889999999999932 2 3566778888888877644222344556788888888653 578899999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
-++..+++.....|.++=-++.|+..++..++.++.+|..++..|-.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999888899898899999999999999999999998877754
No 178
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.8 Score=51.45 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I 523 (729)
.+..|.+.|++.+..++..|+..|.+++... -. .+..|.+.++|++.++.++..|+.++..+-.- ++--.
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~E-ma------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-- 178 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSPE-MA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-- 178 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCHH-Hh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH--
Confidence 4556777788888888889999998887631 11 24567788899999999999999888776432 22211
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
-+++....+|.+.+..+...++..+..|+
T Consensus 179 ---~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 179 ---HFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred ---HhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 12334444444444444444444444444
No 179
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.86 E-value=1.9 Score=52.39 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=142.3
Q ss_pred HHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhc----CCC----HHHHHHHH
Q 004806 482 IANCGAINILVDMLHSS-----ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----TGS----PEARENAA 548 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~-----d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~----s~~----~e~r~~Aa 548 (729)
+.+.|++..|+.+|.+- +..+....+.+|...+.-..||..+.+.|+++.|++.|. .+. .++-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45679999999999752 344555566666656666889999999999999998874 333 45555555
Q ss_pred HHHHHhccCcc---hhhhhh----------ccCcHHHHHHhhcCC----CHHHHHHHHHHHHhcccCcHHHH-HHHHcCc
Q 004806 549 ATLFSLSVIED---NKIKIG----------RSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKA-RIVQAGA 610 (729)
Q Consensus 549 ~aL~nLS~~~e---~k~~I~----------~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~en~~-~lv~~G~ 610 (729)
.++..|..... ...... ...-+..|++.+.+. ++.+....+++|-+|+.....+. .+++. .
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H
Confidence 55555533111 111100 112356666666654 67888888999999988655443 33331 1
Q ss_pred HHHHHHhc--CC----CH-HHHHHHHHHHHHHhCCcch---HHHHHhCCcHHHHHHHHccC--------CHH--------
Q 004806 611 VKHLVDLM--DP----AA-GMVDKAVAVLANLATIPDG---RVAIGQENGIPVLVEVVELG--------SAR-------- 664 (729)
Q Consensus 611 V~~Lv~LL--~~----~~-~v~e~Al~~L~nLa~~~e~---r~~i~~~g~I~~Lv~lL~s~--------s~~-------- 664 (729)
...+++= +. +. -..+..+.+..++-.+..| +..+++.|++...+.+|... ++.
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 1111211 11 11 1223333333334333333 78889999999888888542 222
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcC
Q 004806 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 665 ~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~ 721 (729)
....+...|.-||.+.... +..+..++++.|..|=+.. ...+-..|-.+|..|+..
T Consensus 351 sLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 2344777888888877643 4445667787777766554 345666777777777663
No 180
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=2.5 Score=50.12 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=133.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc
Q 004806 447 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526 (729)
Q Consensus 447 ~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~ 526 (729)
..|..+|.+........|+..|..+...... -...+|..|+...+.+.+++.-.---|..-+..+.+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 4577788888888888898877655443322 2345788889899999998877666666666543332211
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHH
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARI 605 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~l 605 (729)
-|..+-+-|+++++.+|..|+++|..+ |..++..-.+-++-+...+..+.+++.|+.||-.|=. .++.+..+
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 355666778999999999998888876 2222222222333345567789999999999998855 44544433
Q ss_pred HHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 606 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 606 v~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
+..+-.|| +.+..++-.|+.+...+|- +. -.++. +-...|..+|...+...|-..+..|..-|+
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--er-ldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ER-LDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hH-HHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 33444556 5566677777777777663 22 22222 225666777766667777776766666654
No 181
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=2 Score=50.33 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCcc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNN 519 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--~~v~e~Al~aL~nLs~~~~~ 519 (729)
++..+..+-+.|.+.++.-+.-|+.++.++... +.+..+. .-|+ ++|-+.+ .-++..|+-+|+.|-.. +
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--s 179 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--S 179 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--C
Confidence 345666667777788888888899999887653 2333332 2333 5665543 44666777777666432 1
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
-..+--.+....++++|.+.+..+...+...+..|+.
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 1122223567788888887776666666666666654
No 182
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.37 E-value=0.5 Score=49.44 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC--ccHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND--NNKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~~--~~k~~I~~~g~I~~Lv~ 534 (729)
..|+..|..+|. +++.|..+.++...-.|..+|+..+ +.++..++.+++.|...+ +.-..+...+.+|..++
T Consensus 68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 467778888888 5689999999999888999986542 557788889998887643 34555667899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHHH-hhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.+..|+.-.|..|.-++..+-.++..-..+... .++..++. +.+.+++++.+..+++-..|+.++..+..+
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL 226 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREAL 226 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999998888887766654444332 34444443 445779999999999999999999988877
Q ss_pred HHcCcHHHHHH------hcCCCHHHHHHHHHHHHHH
Q 004806 606 VQAGAVKHLVD------LMDPAAGMVDKAVAVLANL 635 (729)
Q Consensus 606 v~~G~V~~Lv~------LL~~~~~v~e~Al~~L~nL 635 (729)
.. .+|..+. ++..+..+...-...+.|+
T Consensus 227 ~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 227 RQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 64 2222111 2234555555444555554
No 183
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.20 E-value=1.6 Score=47.40 Aligned_cols=183 Identities=18% Similarity=0.139 Sum_probs=97.8
Q ss_pred hcCCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC---cHHHHHHHHcCc
Q 004806 536 LQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---HENKARIVQAGA 610 (729)
Q Consensus 536 L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~---~en~~~lv~~G~ 610 (729)
|.......|+.++..|..+.........+.. .-.+..+...++.+..+-+..|+.++.-|+.. ......+.+ .+
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~ 130 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-EL 130 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HH
Confidence 3334455666666666655432222222222 14577788888888776666777777666553 233333333 46
Q ss_pred HHHHHHhc-CC--CHHHHHHHHHHHHHHhCC-cchHHHHHh-CCcHHHHHH--HHcc----------CCHHHHHHHHHHH
Q 004806 611 VKHLVDLM-DP--AAGMVDKAVAVLANLATI-PDGRVAIGQ-ENGIPVLVE--VVEL----------GSARGKENAAAAL 673 (729)
Q Consensus 611 V~~Lv~LL-~~--~~~v~e~Al~~L~nLa~~-~e~r~~i~~-~g~I~~Lv~--lL~s----------~s~~~ke~A~~aL 673 (729)
.+.|..++ +. ....+..++.+|+.++.. ...-..+.+ ...+..+.. .+.. .++.+...|+.+-
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 77888877 32 233444555555555441 111111110 011221111 1221 1234555555554
Q ss_pred HHHhhCCHh-hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 674 LQLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 674 ~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.-|...-+. .....+ ...++.|..+|++.+..+|..|.+.|.+|-.
T Consensus 211 ~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 444433332 222322 3369999999999999999999998888754
No 184
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.14 E-value=0.28 Score=43.85 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 649 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 649 g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~--~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..++.++..+...+.+++..|+.+|.|++..... .++. ..++..|.+++...+++||..|.-+-++|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARG---EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 4688888999999999999999999999987542 3332 347888999999999999988877777665
No 185
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=0.28 Score=57.70 Aligned_cols=243 Identities=20% Similarity=0.243 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+....+.+++.....+.+.+.-.--.|.+.++..+.- ..+++..++.=..+.++.++.-|++.+.-+-...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 4567888888888888777766666777777765431 2245555555556678988888888776553221
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
+......+|.+.++++++.+|..++..+.++ +..+.......|.++.|.+++.+.++.+..+|+.+|..+...+.+
T Consensus 118 --i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 --ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred --HHHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 1123578899999999999998888777665 445566666779999999999999999999999999998764432
Q ss_pred -HHHHHHcCcHHHHHHhcCCCHHHHH-HHHHHHHHHhCCc--chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 602 -KARIVQAGAVKHLVDLMDPAAGMVD-KAVAVLANLATIP--DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 602 -~~~lv~~G~V~~Lv~LL~~~~~v~e-~Al~~L~nLa~~~--e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
-...+....+..++..+. +..+ .-+.+|.+++... +.+++. ..+..+.-.|.+.+..+.-.++.++.++.
T Consensus 194 ~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 111111112223333331 1111 1233444444411 111111 12344455555566666666666666665
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCC
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGT 704 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~ 704 (729)
..-.... ..+-...-++|+.++....
T Consensus 268 ~~~~~~~-~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 268 KYLKQVN-ELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHH-HHHHHHhcccceeeecccc
Confidence 5544322 2222234455555555443
No 186
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.09 E-value=0.97 Score=53.01 Aligned_cols=224 Identities=12% Similarity=0.129 Sum_probs=125.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCccH---HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhc
Q 004806 491 LVDMLHSSETKIQENAVTALLNLSINDNNK---SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGR 566 (729)
Q Consensus 491 Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k---~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~ 566 (729)
++..|++..+.++.+|+..+..|+.--..+ ..+...|. .|.+-|....+++.-..+.+|..+..... .+..-=.
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 344567778888888888887775321111 12222222 25566777778877777777766654221 2222122
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc-H---HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCC--c
Q 004806 567 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E---NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATI--P 639 (729)
Q Consensus 567 ~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~-e---n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~--~ 639 (729)
.+.+|.|..+|++...+++.++...+..++... + .|.-| ...--|+++|. .+..++..|...++.++.. +
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence 488999999999999999999999999988632 2 22222 12223555553 4556666666555555431 1
Q ss_pred --------------chH---------HHHHhCC----cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 640 --------------DGR---------VAIGQEN----GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 640 --------------e~r---------~~i~~~g----~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
+-+ ..+.+.. ++|.|+.=-+.....+|.-.+.+|..+...-.+....-+. -+
T Consensus 959 qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy-av 1037 (1172)
T KOG0213|consen 959 QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY-AV 1037 (1172)
T ss_pred HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-Hh
Confidence 100 1111211 2344433334455566665555555554433222211111 13
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 693 VPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 693 v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.|.|-..+...+.--|+-|..++++|.-
T Consensus 1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 5556666666777778888888888764
No 187
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.068 Score=56.92 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCC--CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 136 PIP--SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 136 ~~p--~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++| ++=.||||..=--..|..||||.-|..||.+|+.+. ..|-+|+.....
T Consensus 416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 355 678999999888888999999999999999999875 569999776543
No 188
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.03 E-value=0.023 Score=61.24 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=41.1
Q ss_pred cccCccccccCceecCCCccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 004806 142 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 188 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 188 (729)
.|-||-+==+|=-+-||||-.|-.|+..|.... +.+||+||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999998998888999999999999999654 78899999877654
No 189
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.00 E-value=1.6 Score=48.46 Aligned_cols=242 Identities=17% Similarity=0.195 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHH-HHHHHHHHHhhcCCc
Q 004806 442 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQ-ENAVTALLNLSINDN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~-e~Al~aL~nLs~~~~ 518 (729)
..+.|..+++.|. +....+|+.++-.|..-+. ++..|..+...|.+..++..+... +..+. ..++.++.-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 3567888888888 3355678888888887777 678999999999999999999543 33233 334444444555554
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCH-HHHHHH-HHHHHHhccCcchhhhhhccCcHHHHHHhhc---------CCCHHHHHH
Q 004806 519 NKSAIANANAIEPLIHVLQTGSP-EARENA-AATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---------NGTPRGKKD 587 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~-e~r~~A-a~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---------~~~~~v~~~ 587 (729)
+-..+...+.+..++++|..... ...... ..-=.+++. + ....+..+..++. .....-+..
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------V-QQKSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------H-HHHHHHHHHHHHhccccccccCCcccccccH
Confidence 55555556677777888871100 000000 000000000 0 0111111222221 111223444
Q ss_pred HHHHHHhccc---------------CcHHHHHHHHcCcHHHHHHhcC----C-------------CHHHHHHHHHHHHHH
Q 004806 588 AATALFNLSI---------------YHENKARIVQAGAVKHLVDLMD----P-------------AAGMVDKAVAVLANL 635 (729)
Q Consensus 588 Al~aL~nLs~---------------~~en~~~lv~~G~V~~Lv~LL~----~-------------~~~v~e~Al~~L~nL 635 (729)
|+.+|..++. .+--+..+...|++..+++++. . .....+.++.+|.+.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 5555555530 1123566777888888888762 1 012456789999998
Q ss_pred hC-CcchHHHHHhC--CcHHHH-HHHHcc---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 636 AT-IPDGRVAIGQE--NGIPVL-VEVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 636 a~-~~e~r~~i~~~--g~I~~L-v~lL~s---~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
+. +.+.+..+... +.++.+ ..++.. ........++.+|.|+..+++..+..+...+.
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 87 44555555432 233333 333322 23344678999999999999877777665433
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.80 E-value=0.022 Score=62.65 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=36.9
Q ss_pred ccccCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
=.||+|++=|-+-| ++.|.|+|--+|+.+|+.. +||+||--.+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 37999999999887 3689999999999999975 5999986554
No 191
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.045 Score=59.64 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=38.0
Q ss_pred ccccCccccccC---ceecCCCccccHHHHHHHHhcCC--CCCCCCCc
Q 004806 141 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTRQ 183 (729)
Q Consensus 141 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~ 183 (729)
|.|||..+--.| |+.+.|||+.+|.+|.+-..+|. ..||.|..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 689999988776 89999999999999999999886 56999953
No 192
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.71 E-value=0.25 Score=41.75 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 585 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 585 ~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
.+.|++|+.+++..+.....+-+.++|+.++++.. +-..++--|+.+|..++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 57899999999999888888888999999999983 556788889999999999999999887765
No 193
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.48 E-value=3.8 Score=47.06 Aligned_cols=257 Identities=14% Similarity=0.080 Sum_probs=140.6
Q ss_pred hhhHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004806 440 SGIETQVRKLVEDLKS-------TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 512 (729)
Q Consensus 440 ~~~~~~V~~Lv~~L~s-------~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~n 512 (729)
.+....+|.|+.+|.. ++......|..+|..++.. ....|.+. ++..+-.-+.+++..-++.|+.+++.
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4457789999999864 2344677888899888773 22233322 33333344567788888999999988
Q ss_pred hhcCCc--cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC---CHHHHHH
Q 004806 513 LSINDN--NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKD 587 (729)
Q Consensus 513 Ls~~~~--~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~ 587 (729)
+-..+. ....+ -..++|.++....+...-++..+++++..++.+ ....|--.|-++..+.-+..+ .+....+
T Consensus 393 vm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 393 VMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred hhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHhh
Confidence 755432 22222 346788888888877777899999999888642 122232335555555444333 5778889
Q ss_pred HHHHHHhcccC-cHHH---HHHHH---cCcHHHHHHhc---CCCHHHHHHHHHHHHHHhC-CcchHHHHHh---------
Q 004806 588 AATALFNLSIY-HENK---ARIVQ---AGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ--------- 647 (729)
Q Consensus 588 Al~aL~nLs~~-~en~---~~lv~---~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~--------- 647 (729)
+.|+..||..+ .+.. ..++. ...+..|+..- ..+...+..+..+|..|.. +++....+..
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~k 549 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKK 549 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999998652 1111 11111 11222333321 2344555556666666654 3444333321
Q ss_pred -CCcHHHHHHHHccC----CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC
Q 004806 648 -ENGIPVLVEVVELG----SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT 704 (729)
Q Consensus 648 -~g~I~~Lv~lL~s~----s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~ 704 (729)
...+..+-..+... .++++-+-+.+|..+.+..+...+.+-+ -.+..+++++++..
T Consensus 550 l~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~ 610 (858)
T COG5215 550 LDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTK 610 (858)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccC
Confidence 01122222222211 2344555555555555544322222222 14566677777663
No 194
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.054 Score=55.35 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=42.8
Q ss_pred CcccccCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
..|.|||++-.|.+=. +-+|||.|.-.++++.-. .+||+|++.+..++.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeEe
Confidence 4699999999999875 458999999999888763 46999999999887654
No 195
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.33 E-value=7.6 Score=40.80 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=119.6
Q ss_pred hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh
Q 004806 484 NCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 484 ~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
...+++.|+..|... .+-++..|..+|.++. .+ ..++.+-+..+.+..++++....+|..+-..+...
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 347899999988764 5667889999998875 22 33445555555566667776666666553211110
Q ss_pred h------hh-------hccCcHHHHHHhhcCCCH-HH-HHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-CCHHHH
Q 004806 562 I------KI-------GRSGAIGPLVDLLGNGTP-RG-KKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMV 625 (729)
Q Consensus 562 ~------~I-------~~~g~I~~Lv~LL~~~~~-~v-~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~~~~v~ 625 (729)
. .+ ...+-+..|-..|.+.+. .. +..|...|.|+-. ..+|..|++-+. ++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHH
Confidence 0 00 011234445444444322 22 2344445555411 124445555553 344456
Q ss_pred HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC
Q 004806 626 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 703 (729)
Q Consensus 626 e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg 703 (729)
..+..+|+.|-+ .-.|+.|.+.|.. ..+.++..|+.+|..++... .++.|.+.+...
T Consensus 205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCc
Confidence 677778877653 2358889888864 68899999999999877542 477788888888
Q ss_pred CHHHHHHHHHHHHHhhc
Q 004806 704 TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 704 ~~rvr~~A~~lL~~L~~ 720 (729)
.+-+++.+.-.|.++..
T Consensus 264 ~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777776643
No 196
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.042 Score=59.70 Aligned_cols=61 Identities=20% Similarity=0.476 Sum_probs=49.1
Q ss_pred ccccCccccccCce-----ecCCCccccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 141 FCCPLSLELMTDPV-----IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 141 f~CpI~~~lm~dPV-----~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
-.||||++-..=|+ ++.|||-|--.||++|+-+. ...||.|.-.-+..++.|-+.+|...+
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 57999999888885 57899999999999999532 234999988888888998887765443
No 197
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.27 E-value=0.092 Score=40.95 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=25.3
Q ss_pred ccccCccccccCceec-CCCcc--ccHHHHHHHHh-cCCCCCCCCCcc
Q 004806 141 FCCPLSLELMTDPVIV-ASGQT--YERAFIKKWID-LGLFVCPKTRQT 184 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~t--y~r~~I~~~~~-~~~~~cP~t~~~ 184 (729)
+.|||+...|+-||.. .|.|. ||-....+... .+.-.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999999974 68765 88755555444 444569999874
No 198
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=4 Score=50.51 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHhcCCHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAIE 530 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~-~~k~~I~~~g~I~ 530 (729)
+.+..+|..+-+.|..+... +.......+. .....|..-+++...-++..++.+|..|-.. + +....+. ..|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 44778999999999988875 3333332221 2333444444555666777778777666322 2 2222221 2355
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc----CcchhhhhhccCcHHHHHHhhcCC--CHHHHHHH--HHHHHhcccCcHHH
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDA--ATALFNLSIYHENK 602 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~A--l~aL~nLs~~~en~ 602 (729)
-++-.++.-+...+.+|..+|..|.. .+..... ....|...+..+..+ .......| +.++..+.. ..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---EF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HH
Confidence 55555577778899999999998873 1111111 112455555555443 22222222 333333322 12
Q ss_pred HHHHHcCcHHHHHH----hc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 603 ARIVQAGAVKHLVD----LM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~----LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
..+.+.+.++.+++ .| .....++..|++.+..++. .++..-.-.....++.+..++.......+...-..|-.|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22333334444444 44 4678899999999999887 444433333344677777777766666666555555555
Q ss_pred hhC
Q 004806 677 CTN 679 (729)
Q Consensus 677 ~~~ 679 (729)
++.
T Consensus 897 irk 899 (1176)
T KOG1248|consen 897 IRK 899 (1176)
T ss_pred HHH
Confidence 544
No 199
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=3.7 Score=48.57 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=75.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-----------CCHHHHHHHHHHHHhccc-C
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----------GTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-----------~~~~v~~~Al~aL~nLs~-~ 598 (729)
-++++|.+++.+++..+.....-|+. ..-+..++.+|+. .+...+..-+.+|+..+. +
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvs----------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVS----------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhh----------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence 34455566666666666665555543 3445556666542 123446666677777665 4
Q ss_pred cHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ 675 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~n 675 (729)
++ +.+.+|+.|++.+. .+.......+..+...-. .+.-|. ..+..|++-+.. .+....+.|+|++..
T Consensus 391 p~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 391 PE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred hH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHHhhhhhcccccchhHHHHHHH
Confidence 55 45668889999994 443333333332222211 222232 234555555533 567888899999999
Q ss_pred HhhCCHhh
Q 004806 676 LCTNSSRF 683 (729)
Q Consensus 676 L~~~~~~~ 683 (729)
-|....+.
T Consensus 461 Yce~~~~i 468 (948)
T KOG1058|consen 461 YCEGLSEI 468 (948)
T ss_pred HHhhhHHH
Confidence 98876643
No 200
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.94 E-value=0.98 Score=53.50 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=129.6
Q ss_pred CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHH-hccCcchhhhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHh
Q 004806 517 DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFN 594 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL~~~~-~~v~~~Al~aL~n 594 (729)
..-+...+..|+...|+++...+....+.....+|.. ++. +..+. ...++++...+.... -.-.-.++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 3345556778999999999999888888888888872 111 00000 144555555544332 2334578899999
Q ss_pred ccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHH-h-CCcHHHHHHHHccCCHHHHHHHH
Q 004806 595 LSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG-Q-ENGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 595 Ls~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~-~-~g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
|+. +...++++++.-.++.+-.++ +++...+..++..+.||..++..-+..+ + ...++.....+..........++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 987 556677888877777766555 6778888899999999999887654443 3 34677777777666666667777
Q ss_pred HHHHHHhhCCHhhHHHHH-hCCCHHHHHHhhhCCCHHHHHHHHH
Q 004806 671 AALLQLCTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQA 713 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl-~~G~v~~Lv~Ll~sg~~rvr~~A~~ 713 (729)
.++..+.......|..+. -......++.+++++.+.++.....
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 777767777666666322 2456777888888877666654443
No 201
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.85 E-value=1.1 Score=50.88 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCH----HHHHHHHHHHHhcccCcHHHHH
Q 004806 529 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP----RGKKDAATALFNLSIYHENKAR 604 (729)
Q Consensus 529 I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~----~v~~~Al~aL~nLs~~~en~~~ 604 (729)
...+.+++.+++...+..|...|.+|+.+......++...++..|..++.++.. .+...++.++..|....-..+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 455778889999999989999999999998888888888899999999998754 5556666666665443323333
Q ss_pred HHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 605 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 605 lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
.+....|.....+. ..+..+...|+..|.++..+... +..+.++--+..|+..|+..+...+..|...|-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 34444444444444 23455678899999999987664 566666667999999999999999999888887776554
No 202
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.81 E-value=0.36 Score=43.13 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHH
Q 004806 504 ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR 583 (729)
Q Consensus 504 e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~ 583 (729)
..++.+|...+..-.....-.-...+++++..+.+.+..+|..|+.+|.|++..........-...+..|.+++.+.++.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 34455555554432222222223578999999999999999999999999986443322222347888899999999988
Q ss_pred HHHHHH
Q 004806 584 GKKDAA 589 (729)
Q Consensus 584 v~~~Al 589 (729)
++..|.
T Consensus 84 Vr~~a~ 89 (97)
T PF12755_consen 84 VRSAAE 89 (97)
T ss_pred HHHHHH
Confidence 877663
No 203
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.79 E-value=5.2 Score=43.04 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=110.1
Q ss_pred HHHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCcc
Q 004806 443 ETQVRKLV-EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI--NDNN 519 (729)
Q Consensus 443 ~~~V~~Lv-~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~--~~~~ 519 (729)
.+.+..|| ..+++.++.+|..|+.+|+.++--+.+.- ...++.+...+..++..++..|+.+|..+.. +...
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 45666666 67889999999999999999988654221 2347778888877899999999999998853 1111
Q ss_pred HH-------HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC----CCHHHHHHH
Q 004806 520 KS-------AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN----GTPRGKKDA 588 (729)
Q Consensus 520 k~-------~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~----~~~~v~~~A 588 (729)
.. .......+..+.+.|.+.+++++..|+..++.|-....... ...++..|+-+.-+ .+.+++..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 12234567778888999999999999999998754322222 13344444433222 234444444
Q ss_pred HHHHHhcccCcHHHHHHHHcCcHHHHHHhc
Q 004806 589 ATALFNLSIYHENKARIVQAGAVKHLVDLM 618 (729)
Q Consensus 589 l~aL~nLs~~~en~~~lv~~G~V~~Lv~LL 618 (729)
...+-..+..+...+..+....++.+..++
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 445556666665556666677777777766
No 204
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.78 E-value=4.8 Score=39.85 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCC-HHHHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA-IEPLIHV 535 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~-I~~Lv~l 535 (729)
++.++..++..+..|+..-+.. + ...++.+...|.++++.++..|+.+|..|...+-.| -.|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 3678889999999998854321 1 245888999999999999999999999996543221 1133 3778888
Q ss_pred hcCCCHHHHHHHHHHHHHhccC
Q 004806 536 LQTGSPEARENAAATLFSLSVI 557 (729)
Q Consensus 536 L~s~~~e~r~~Aa~aL~nLS~~ 557 (729)
|.+.+++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988654
No 205
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.75 E-value=1.2 Score=46.67 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh
Q 004806 624 MVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 701 (729)
Q Consensus 624 v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~ 701 (729)
....|+.+|.-+|- ++..|..+.+..++..|+.+|. ...+.++-.++.+|..+...++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567788887776 9999999999999999999995 467899999999999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHh
Q 004806 702 SGT--PRAKEKAQALLSYF 718 (729)
Q Consensus 702 sg~--~rvr~~A~~lL~~L 718 (729)
+.. ..+|-|..+.|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 864 67888988866544
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.70 E-value=3 Score=51.65 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=67.9
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc----Ccchhh
Q 004806 488 INILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV----IEDNKI 562 (729)
Q Consensus 488 I~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~----~~e~k~ 562 (729)
+..|...++. ...+.+.+|+..|..|+..-..-.. -.-++|-+++++.+....+|..|+.+|..+-. .+..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 4444444443 3566778899999888864221111 12468999999999999999999999887643 233344
Q ss_pred hhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcc
Q 004806 563 KIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLS 596 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs 596 (729)
.|.-.=.+|.|-.|+.+. ...++..-+..|..|+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 455556788888888874 3334433333444443
No 207
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.63 E-value=2.4 Score=50.96 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=140.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHH
Q 004806 496 HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIG 571 (729)
Q Consensus 496 ~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~ 571 (729)
.+..|.+.-.|.+++...+.. ..+...+ .-.+...+..+. +..+.++..|+++++..+.. ..+.. .+.+.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHH
Confidence 345666666777776654322 1121111 112333333333 33456787888888776621 11111 37788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhCCcchHHHHHhC
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE 648 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~ 648 (729)
.|.++......++...-..+|...+..+.-.....++...|.++.++ ..++-++..+-.++..|+....+..-+ ..
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QE 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HH
Confidence 88888887788888888888888888777777778888889888887 356667777777777777633332222 23
Q ss_pred CcHHHHHHHHccCC----HHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHh-hhCCCHHHHHHHHHHHHHhhc
Q 004806 649 NGIPVLVEVVELGS----ARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVAL-SQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 649 g~I~~Lv~lL~s~s----~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~L-l~sg~~rvr~~A~~lL~~L~~ 720 (729)
..||.|+..|.... .....-|+.+|..+.++.+. .-+.++. -++|++.++ +.+++..+-+.|.++|+.+-.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 46999999998755 67778888888888877643 2233333 357777775 556678888999999988743
No 208
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.61 E-value=1.2 Score=51.39 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=69.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-c---cHHHHH
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-N---NKSAIA 524 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~---~k~~I~ 524 (729)
|.+.|....+++.-..+.++..+.........+=.-.|.+|.|..+|++....++++.+..+..++.+. + .|..+.
T Consensus 651 LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR 730 (975)
T COG5181 651 LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR 730 (975)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH
Confidence 334444556666555555555444321111001112388999999999999999999999999998753 2 233332
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
.--.|+..|++.+.++|.+|..++..++.
T Consensus 731 ---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 731 ---ICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 23357888999999999999999888864
No 209
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=28 Score=41.35 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=107.2
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhc-CCCHH
Q 004806 464 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPE 542 (729)
Q Consensus 464 Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~-s~~~e 542 (729)
.+-+.-+|+.+-+.....+. .++..|-.+|.+....++.-|+.-++.|+........+-.. .+.++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 44444556655444444444 46788889998888899999999999988776666555544 788899998 66788
Q ss_pred HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc--Cc------HHHHHH-------HH
Q 004806 543 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YH------ENKARI-------VQ 607 (729)
Q Consensus 543 ~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~------en~~~l-------v~ 607 (729)
++..|+..|..++.. +|...| +..|+++|.+-+..+++.-+.=+.-|+. .. +..-.+ ++
T Consensus 385 irrravDLLY~mcD~-~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDV-SNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhch-hhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 999999999988743 344434 4567777777777666654443333332 11 111111 12
Q ss_pred cCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 608 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 608 ~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
.++-..++++.-.+.++...|+..+...-..+...+.|++.|
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg 500 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG 500 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 233344444443445566666655554444444445554433
No 210
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.47 E-value=2 Score=47.04 Aligned_cols=197 Identities=13% Similarity=0.145 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH-----HHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM-----VIANC--GAINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~-----~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
.+.+..|+..|..-+-+.+..+......+.+.....+. .+... ..+..|+.-- +++++...+..+|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 46778888888888888898888888888876555543 23221 3344444433 356666777778888877
Q ss_pred CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhhhhhcc---CcHHHHHHhhcCCCHHHHHHHHHH
Q 004806 516 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRS---GAIGPLVDLLGNGTPRGKKDAATA 591 (729)
Q Consensus 516 ~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~---g~I~~Lv~LL~~~~~~v~~~Al~a 591 (729)
++.-...+.....+..+...+..++-++-..|..++..|-. +...-...... ..+.....||.+++--+++.++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 77777788888888889999999999999999999888644 33333333322 577788899999999999999999
Q ss_pred HHhcccCcHHHHHHHH----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch
Q 004806 592 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 592 L~nLs~~~en~~~lv~----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
|..|-.++.|...+.. ..-+..++.+| +....++-.|..++.....++..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999998888776554 44667777788 56778889999999988775543
No 211
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.46 E-value=0.062 Score=42.35 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=35.0
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
+..|=.|...=...+++||||..|+.|-.- ++-+.||+|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 345667777777899999999999988332 33345999999987643
No 212
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=2.3 Score=51.58 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=153.3
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCCC---
Q 004806 465 TAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGS--- 540 (729)
Q Consensus 465 l~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~~--- 540 (729)
..+|..+.+.+.+|...+.++.++..++.+|-+ .+-+...+.++.-|.. ++.. +....+-.++..|++|.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceec
Confidence 456777888899999999999999999888843 3333444455544432 2221 11234556777777642
Q ss_pred ---------HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcC----------CCHHHHHHHHHHHHhc-----
Q 004806 541 ---------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNL----- 595 (729)
Q Consensus 541 ---------~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~----------~~~~v~~~Al~aL~nL----- 595 (729)
..+....++++|.+.. +...+..+++.+++..|...|.. ++..+...-...|+.+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 2345556677777654 55667778888888888777641 1222222223333322
Q ss_pred ccCcHHHHHHH-------------HcC---------cHHHHHHhc-C--CCHHHH--HHHHHHHHHHhC------Cc---
Q 004806 596 SIYHENKARIV-------------QAG---------AVKHLVDLM-D--PAAGMV--DKAVAVLANLAT------IP--- 639 (729)
Q Consensus 596 s~~~en~~~lv-------------~~G---------~V~~Lv~LL-~--~~~~v~--e~Al~~L~nLa~------~~--- 639 (729)
|.++.|+.++. ..| +|..|.++- + ....+. ..|+..+-.+-. .+
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 33455554322 233 222222221 0 011111 123332222211 11
Q ss_pred --chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh---CCCHHHHHHHHHH
Q 004806 640 --DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ---SGTPRAKEKAQAL 714 (729)
Q Consensus 640 --e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~---sg~~rvr~~A~~l 714 (729)
..++.|...|++..|+..+....++.+-.-...|-.+++.++.+.......|.++.|++++. +|....--.|..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 23677888899999999998889999999999999999999988888888899999998875 4555555566666
Q ss_pred HHHhhcCc
Q 004806 715 LSYFRNQR 722 (729)
Q Consensus 715 L~~L~~~~ 722 (729)
+.+|...+
T Consensus 977 vemLgayr 984 (2799)
T KOG1788|consen 977 VEMLGAYR 984 (2799)
T ss_pred HHHHhhcc
Confidence 66665554
No 213
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.28 E-value=2.1 Score=46.14 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=110.6
Q ss_pred CcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh--h
Q 004806 486 GAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I 562 (729)
Q Consensus 486 GaI~~Lv-~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k--~ 562 (729)
+.+.-|+ ..+.+.++.+++.|+.+|+-.+.-+.. + ....++.+...+..++.+++..|+.+|+.+....... .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444443 677889999999999999888754321 1 1234777888887788999999999999886532211 1
Q ss_pred -------hhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHh-cC----CCHHHHHHHHH
Q 004806 563 -------KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL-MD----PAAGMVDKAVA 630 (729)
Q Consensus 563 -------~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~L-L~----~~~~v~e~Al~ 630 (729)
.......+..+.+.|.+.++.++..|+..++.|-....... ...++..|+-+ ++ .+..++.--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 12223677788888888999999999999988765332221 12233333332 33 23445544445
Q ss_pred HHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 631 VLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
.+-..|......+..+....++.+..+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 566777766666677777788888887765
No 214
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=25 Score=42.18 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=132.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHH
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPL 532 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~L 532 (729)
....++.++..|+.+|-.|-.-.++....+ +..+-.||.+.++.|.-.|+.+...++-+ .-..| .+....|
T Consensus 152 ~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--Hknyrkl 222 (968)
T KOG1060|consen 152 VTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKL 222 (968)
T ss_pred hcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHH
Confidence 346688999999999998877666655544 45566678888888888888888777632 11111 2335555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCc---c----------------------hhhhhhcc----CcHHHHHHhhcCCCHH
Q 004806 533 IHVLQTGSPEARENAAATLFSLSVIE---D----------------------NKIKIGRS----GAIGPLVDLLGNGTPR 583 (729)
Q Consensus 533 v~lL~s~~~e~r~~Aa~aL~nLS~~~---e----------------------~k~~I~~~----g~I~~Lv~LL~~~~~~ 583 (729)
+.+|.+-+.=.+.....+|..-+... . .+.-+... -.+...-.||.+.++.
T Consensus 223 C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 223 CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH
Confidence 66554433223333333333322210 0 00011101 1223333455677889
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-----------------chH----
Q 004806 584 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIP-----------------DGR---- 642 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~-----------------e~r---- 642 (729)
+..+++.+.+.|+--.++. +.+..|+.+|.....++.-.+..++.++.-. ...
T Consensus 303 VVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~l 376 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQVT------KIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKIL 376 (968)
T ss_pred HHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHH
Confidence 9999999999987643222 2466788887544444444444444443211 111
Q ss_pred -----HHHHhCCcHHHH----HHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHH
Q 004806 643 -----VAIGQENGIPVL----VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA 713 (729)
Q Consensus 643 -----~~i~~~g~I~~L----v~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~ 713 (729)
..++.++-+..+ -..+.+.+......|+.+|..++..... +....+..|+.++.+.+..+...|..
T Consensus 377 KleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 377 KLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHH
Confidence 111223333333 3334455555666666666665544321 12234666777777766666666655
Q ss_pred HHHHhh
Q 004806 714 LLSYFR 719 (729)
Q Consensus 714 lL~~L~ 719 (729)
.++.|-
T Consensus 452 vIk~Ll 457 (968)
T KOG1060|consen 452 VIKRLL 457 (968)
T ss_pred HHHHHH
Confidence 555543
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.15 E-value=5 Score=49.84 Aligned_cols=263 Identities=16% Similarity=0.150 Sum_probs=142.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----Ccc
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----DNN 519 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~----~~~ 519 (729)
.+..-++.++. .+.+..|+..|+.|+..-. +++ =.-++|.++.++.+...+|+..|+.+|..+... +..
T Consensus 426 ~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRALKT--IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhhhc--chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444455544 3568899999999987532 221 124689999999999999999999998887421 111
Q ss_pred HHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhccC-------------------cchhhhh---hcc------CcH
Q 004806 520 KSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI-------------------EDNKIKI---GRS------GAI 570 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~-------------------~e~k~~I---~~~------g~I 570 (729)
-..|.-.-.+|.|-+++.+.+ ..+|..-|..|..|+.. +++.... .+. ..+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 222333345666777777633 33444444444444321 0000000 000 112
Q ss_pred HH-HHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcC----cHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 571 GP-LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG----AVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 571 ~~-Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G----~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
.. .+.||.+..+-+++.-+..|.-||.+ +.+.+ .+..|+.+| +.+..++..-...+.-++..-.-|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 22 22334444444444444454444431 11111 334444455 333333332222222222211111
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
-+++..+|.|.+-|..+.+.+...|+.+|.-||...--.+..+.+ .++...-++...+.-+|+.+..++-...++..
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 023455788888888889999999999999999876422223332 24445556667788899999888776665543
No 216
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.96 E-value=0.13 Score=39.69 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=22.3
Q ss_pred ccCccccc--cCceec--CCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 143 CPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 143 CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
||+|.+-| +|=-.. +||+-+||.|..+-...++..||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 222233 57999999999888876667799999876
No 217
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.87 E-value=1.8 Score=42.84 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC---------CCHHHHHHHHHHHHHh
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS---------SETKIQENAVTALLNL 513 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s---------~d~~v~e~Al~aL~nL 513 (729)
.....+++.++...... ..+..|+..-+.. ..--..+.+.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45567777777665432 4444554333332 2334556678999999998852 3567889999999988
Q ss_pred hcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 514 SINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 514 s~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 877776667665 589999999999999999999999998775
No 218
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.76 E-value=8.1 Score=42.40 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=140.3
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH-----HHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS-----AIANA--NAIEPLIHVLQTGSPEARENAAATLFS 553 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~-----~I~~~--g~I~~Lv~lL~s~~~e~r~~Aa~aL~n 553 (729)
+...|.+..|+..|..-+-+.+..++.+..++... .+.+. .+... ..+..|+.-- +++++-..+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence 44558899999999888999999999999988654 22222 22221 2233333322 246666777788888
Q ss_pred hccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHc---CcHHHHHHhcCC-CHHHHHHH
Q 004806 554 LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQA---GAVKHLVDLMDP-AAGMVDKA 628 (729)
Q Consensus 554 LS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~---G~V~~Lv~LL~~-~~~v~e~A 628 (729)
...++.....|.....+..+.+.+..++-++..+|..++..|-. ++.....++.. ..+.....||.. +--++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88887777777778888899999999999999999999998654 55555666653 355666677754 44456889
Q ss_pred HHHHHHHhCCcchHHHHHh----CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 629 VAVLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 629 l~~L~nLa~~~e~r~~i~~----~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+.+|+.|-..+.+...+.. ..-+..++.+|++.+..++..|.-+.--..++.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999988887666543 234888999999999999999999988777765
No 219
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.72 E-value=1.1 Score=47.38 Aligned_cols=43 Identities=30% Similarity=0.638 Sum_probs=36.9
Q ss_pred ccccCccccccC---ceecCCCccccHHHHHHHHhcCCC--CCCCCCc
Q 004806 141 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLF--VCPKTRQ 183 (729)
Q Consensus 141 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~--~cP~t~~ 183 (729)
|.||+..+.-.| ||++.|||..-+.++.+--++|.- .||.|..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 899999998876 999999999999999988887743 4999953
No 220
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=2.2 Score=53.84 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHh-hc-CCccHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNL-SI-NDNNKS 521 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nL-s~-~~~~k~ 521 (729)
....|...+.+.++..+..++..|..+.+.-...+..... ......+..+|...|+.+|..|..-|.-. .. +...|.
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 4445555666889999888777776665543323332222 24557788899999999999888776432 11 223333
Q ss_pred HHHhcCCHHHHHHHhcCCCHH----------------------HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC
Q 004806 522 AIANANAIEPLIHVLQTGSPE----------------------ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN 579 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e----------------------~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~ 579 (729)
. .+..|+.-|..|... .....-.=|+||+. .+++...|-..++|-++
T Consensus 899 ~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 S-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANH 967 (1702)
T ss_pred H-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhh
Confidence 3 344455544332211 01122233334432 23333455555555555
Q ss_pred C-CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHH
Q 004806 580 G-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVE 656 (729)
Q Consensus 580 ~-~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~ 656 (729)
. ...-++-|+.=+..|+....-+.+-.-...||.|.++= |++..+......++..|...... ..... ..++..|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHH
Confidence 4 23334444444444433221111112234666666654 77777776666666666654322 22222 234556666
Q ss_pred HHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 657 VVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 657 lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
-|.+..-+++|.++.||..|-.+.+
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCC
Confidence 6667788999999999999998865
No 221
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.42 E-value=1.8 Score=45.49 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcC
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQT 538 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s 538 (729)
...|+..|.-++--++..|..+.....+..|+.+|.. ..+.++..++.+|..+.. ++.|.+.+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4567888888888889999999999999999999954 578899999999877654 58888999899999999999987
Q ss_pred CC--HHHHHHHHHHHHHh
Q 004806 539 GS--PEARENAAATLFSL 554 (729)
Q Consensus 539 ~~--~e~r~~Aa~aL~nL 554 (729)
.. .+++...+..|+-.
T Consensus 188 ~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccHHHhHHHHHHHHHH
Confidence 64 66777777665543
No 222
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.07 Score=41.70 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=37.3
Q ss_pred cccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccC
Q 004806 142 CCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
.|-||.+---|-|+--|||. .|-.|=.+-|...+..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998888888899995 788888787776778899999875
No 223
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.16 Score=53.20 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=40.3
Q ss_pred cccCcc-ccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 142 CCPLSL-ELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 142 ~CpI~~-~lm~dPV~----~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
.||+|. +.+..|-+ -+|||+.|-+|.-+-|..|...||.|+.+|....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 489987 56666653 28999999999999999998889999998866443
No 224
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.95 E-value=0.056 Score=64.19 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=41.5
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCC-CCCCCCccCCCCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLF-VCPKTRQTLAHTTL 190 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~-~cP~t~~~l~~~~l 190 (729)
+.|+||.+ -.+||++.|||.||+.|+...+..... .||.|+..+.+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 899999999999999999999876433 49999887765444
No 225
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=90.87 E-value=0.28 Score=38.09 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=32.3
Q ss_pred cccCccc--cccCceecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 004806 142 CCPLSLE--LMTDPVIVASG-----QTYERAFIKKWIDLG-LFVCPKTR 182 (729)
Q Consensus 142 ~CpI~~~--lm~dPV~~~~G-----~ty~r~~I~~~~~~~-~~~cP~t~ 182 (729)
.|-||++ --.+|.+.||. +-|=+.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778875 55788888875 679999999999765 45699985
No 226
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.86 E-value=7 Score=38.66 Aligned_cols=92 Identities=23% Similarity=0.263 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcH-HHHHHhh
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI-GPLVDLL 577 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I-~~Lv~LL 577 (729)
++.++.+++.+|+.|+..-.+ .-...++.+...|+++++.+|..|+.+|..|...+-.|. .|-+ ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 577899999999999754221 112458889999999999999999999999975432222 2433 7788888
Q ss_pred cCCCHHHHHHHHHHHHhcccC
Q 004806 578 GNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 578 ~~~~~~v~~~Al~aL~nLs~~ 598 (729)
.+.++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988664
No 227
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=90.79 E-value=0.061 Score=45.07 Aligned_cols=47 Identities=17% Similarity=0.439 Sum_probs=23.3
Q ss_pred cccccCcccccc-C---ceec----CCCccccHHHHHHHHhc--CC--------CCCCCCCccCC
Q 004806 140 DFCCPLSLELMT-D---PVIV----ASGQTYERAFIKKWIDL--GL--------FVCPKTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~~lm~-d---PV~~----~~G~ty~r~~I~~~~~~--~~--------~~cP~t~~~l~ 186 (729)
+..|+||...+. + |+++ .||++|=..||.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998654 2 5553 58999999999999974 11 24999998875
No 228
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.55 E-value=13 Score=43.45 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 522 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~ 522 (729)
..-..++...+ ++..+++-|+..|..+.++-++... .+|..++.|..++|..|+..|+..|-.++.+ ++....
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 34455555555 5678888999999999988766544 4788999999999999999999999999876 333333
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALF 593 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---~~~~~v~~~Al~aL~ 593 (729)
+ ...|+++|.+.++.-...+-.+|..|-.. + -.+.+..|..-+. .++..+++.++..|.
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ-D------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc-C------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 3 67788999887755444444444443211 0 1245555555544 566777777777664
No 229
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.16 Score=55.32 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=40.0
Q ss_pred CCcccccCccccccCce-----e---cCCCccccHHHHHHHHhcCC------CCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTDPV-----I---VASGQTYERAFIKKWIDLGL------FVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV-----~---~~~G~ty~r~~I~~~~~~~~------~~cP~t~~~l~ 186 (729)
-.+..|-||.+.-.+++ . .+|-|+||-.||.+|-.... ..||+||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45889999999999998 3 45999999999999984332 45999997753
No 230
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.42 E-value=7.9 Score=43.25 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=127.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-C---CCHHHHHHHHHHHHHhhcCCccHH
Q 004806 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-S---SETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s---~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+..+++.-..--+.+...|+..+..+..+.|..-..|.++|.++.++..+. . ...++....-.+|..||.+.....
T Consensus 111 L~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~ 190 (379)
T PF06025_consen 111 LKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLE 190 (379)
T ss_pred HHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHH
Confidence 344444433334567888999999999999999999999999999999887 4 356666666778888899999999
Q ss_pred HHHhcCCHHHHHHHhcCCC-H-HHHH-HHH----HHHHHhccC-cchhhhhhcc--CcHHHHHHhhcCCCHHHHHHHHHH
Q 004806 522 AIANANAIEPLIHVLQTGS-P-EARE-NAA----ATLFSLSVI-EDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATA 591 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~-~-e~r~-~Aa----~aL~nLS~~-~e~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~a 591 (729)
.+.+.+.++.+++++.+.. . .++. ..+ ..+-.|..+ +..|..+.+. ..+..++.+-+......-..+-..
T Consensus 191 ~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~~~~~~~~~~ 270 (379)
T PF06025_consen 191 KVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAPECGWGAKLW 270 (379)
T ss_pred HHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccc
Confidence 9999999999999987654 1 1111 222 333344442 3445444432 333333333333221110000000
Q ss_pred H-------------HhcccCcHHHHHHHHcC-cHHHHH-----------Hhc-C--------CCHHHHHHHHHHHHHHhC
Q 004806 592 L-------------FNLSIYHENKARIVQAG-AVKHLV-----------DLM-D--------PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 592 L-------------~nLs~~~en~~~lv~~G-~V~~Lv-----------~LL-~--------~~~~v~e~Al~~L~nLa~ 637 (729)
. .+.....+ .......+ ...... .-. + .-......++..|..+-.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YI~~v~rFLea~fs 349 (379)
T PF06025_consen 271 TEDSQGKPVVSGESSAVSTDEE-MEEDVEEDDDMESVDTSSQDSTEPDSESSEDEDPDSPELPLTDYIFNVVRFLEAFFS 349 (379)
T ss_pred ccccCCCCCCCCCccccccccc-cccccccccccccccccccCCCCCccccccccccCcccCcHHHHHHHHHHHHHHHcC
Confidence 0 00000000 00000000 000000 000 0 012457788888888888
Q ss_pred CcchHHHHHhCCcHHHHHHHHccCC
Q 004806 638 IPDGRVAIGQENGIPVLVEVVELGS 662 (729)
Q Consensus 638 ~~e~r~~i~~~g~I~~Lv~lL~s~s 662 (729)
+.+....+++.||+..|++++...+
T Consensus 350 N~~~C~~FVe~GGie~LLdLl~LPs 374 (379)
T PF06025_consen 350 NSDHCREFVEKGGIELLLDLLTLPS 374 (379)
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 8999999999999999999987653
No 231
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.34 E-value=0.073 Score=61.93 Aligned_cols=47 Identities=17% Similarity=0.389 Sum_probs=39.8
Q ss_pred cccccCccccccCcee---cCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 140 DFCCPLSLELMTDPVI---VASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~---~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.=.||+|..-+.|-.+ .+|||.||..||..|-+.. .+||.||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 3469999999999887 4799999999999999865 679999987754
No 232
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.32 E-value=0.68 Score=42.88 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=59.1
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
.+..|+++|. +.++.....|+.=|..++...|..+..+-+.|+-..+..|+...++.+|..|..++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4789999994 457788888999999999999988888888999999999999999999999999887653
No 233
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.16 Score=56.55 Aligned_cols=33 Identities=21% Similarity=0.560 Sum_probs=28.4
Q ss_pred ecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 155 IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 155 ~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++||.|.|-|.|+++|.+.-.-.||+||++|+.
T Consensus 603 ~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 469999999999999999654569999999864
No 234
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.2 Score=54.27 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=48.0
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
...+|.+++-.|.|||-+..|..||-..|--|++.. .+-|.|++++..++|++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCcccccccee
Confidence 346899999999999999999999999999999975 46899999999999887
No 235
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.04 E-value=4.7 Score=46.18 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=111.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCC-----CHHHHHHHHHHHHHHhCCcchH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDP-----AAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~-----~~~v~e~Al~~L~nLa~~~e~r 642 (729)
.....+.+++.+++...+..|+..|..|+.++.....++...++..|..++.+ ...+....+.++..|-.+.-.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34567788889999888888999999999999999999999999999999832 2334444555555444322110
Q ss_pred HHHHhCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 643 VAIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~--s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
=......+|.....++. .....+-..|+..|-++..++....+.|.++--++.|+..++..+.++...|..+|..|-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 00111223444444442 2345566778899999888888888999999999999999999999999999998877654
No 236
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.74 E-value=33 Score=41.97 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=118.3
Q ss_pred HHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc----CCC----HHHHHHHHHHHH
Q 004806 445 QVRKLVEDLKS-----TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH----SSE----TKIQENAVTALL 511 (729)
Q Consensus 445 ~V~~Lv~~L~s-----~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~----s~d----~~v~e~Al~aL~ 511 (729)
.+..|+..+.+ +..+.-...+..|+.+++. ..||..+.+.|+++.|+..|. ... ..+.+.-+.++.
T Consensus 118 GL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 118 GLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 34555555543 2223334456666677774 789999999999999999874 333 567777777766
Q ss_pred HhhcCCcc------HHHHH-------hcCCHHHHHHHhcCC----CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHH
Q 004806 512 NLSINDNN------KSAIA-------NANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLV 574 (729)
Q Consensus 512 nLs~~~~~------k~~I~-------~~g~I~~Lv~lL~s~----~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv 574 (729)
-|...... ..... ....+..|+..+.+. ++.+....+++|-+|+..+..+....-. .+.+.+
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F~p~l 275 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HFKPYL 275 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HHHHhc
Confidence 65322111 01000 112366666666654 4778888899999998754443322211 112222
Q ss_pred HhhcC-----CCHHHHHHHHHHHHhccc----C---cHHHHHHHHcCcHHHHHHhcC---C------CHH--------HH
Q 004806 575 DLLGN-----GTPRGKKDAATALFNLSI----Y---HENKARIVQAGAVKHLVDLMD---P------AAG--------MV 625 (729)
Q Consensus 575 ~LL~~-----~~~~v~~~Al~aL~nLs~----~---~en~~~lv~~G~V~~Lv~LL~---~------~~~--------v~ 625 (729)
++=+- .+.... +.+++.++. + ..-|..+++.|++...+++|. + +++ ..
T Consensus 276 ~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 276 DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 21111 112222 334443332 2 245778999999998888771 1 111 23
Q ss_pred HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 626 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 626 e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
..++.+|.-||..-..-+.++...++ .++..|+.
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 46778888888855544444556666 55555544
No 237
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.59 E-value=9.6 Score=46.17 Aligned_cols=263 Identities=17% Similarity=0.194 Sum_probs=149.9
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCccH
Q 004806 444 TQVRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI--NDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L-~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~--~~~~k 520 (729)
..++.++..+ +...+.++..++..+..+++.-+. .....+.++.++.++.++...+++.|...+.++.. +...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 3344444444 355677888888888888885332 66677899999999998888899999888887743 2221
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc--C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~ 598 (729)
=......+.++.....++...+...+...+.|+..-.. .......+++...+++.....++..++.-...++. +
T Consensus 312 --d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 --DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred --hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 12234678888999999999999988888877652222 33444567778888887766666655554444443 2
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
.+....+.....++.+-.+. +.+..+....+.....+.-.-. ...- -....+.+...++...+.++.+-.+.+..+-
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 23344455555566666665 4445555444444444432111 0000 0112455555555566666666655443332
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHH
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~ 716 (729)
...+......+....++.|..+......|++.+..+-+.
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP 504 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence 222211122223334444444444444444444444333
No 238
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=0.087 Score=54.35 Aligned_cols=55 Identities=18% Similarity=0.421 Sum_probs=43.3
Q ss_pred CcccccCccccccCce----------ecCCCccccHHHHHHHHhcC-CCCCCCCCccCCCCCCccc
Q 004806 139 SDFCCPLSLELMTDPV----------IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV----------~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN 193 (729)
++=.|.+|++=+-+-| .++|+|+|---||..|.--| ..|||-|++.+..+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 3567999998776666 58999999999999997644 4689999988766555544
No 239
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.48 E-value=7.7 Score=45.43 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=103.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh---cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN---CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~---~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
.+..+..-..+++.-|+..||.+.++...+-..+-. ..++.-|+..+. .++..+.-++++|.|+-.++.++..++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344444567788899999999999986555444332 235555666655 4577788899999999888777777765
Q ss_pred c--CCHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CcchhhhhhccCcHHHHHHhhcC---C--CHHHHHHHHHHHHhcc
Q 004806 526 A--NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGN---G--TPRGKKDAATALFNLS 596 (729)
Q Consensus 526 ~--g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~~g~I~~Lv~LL~~---~--~~~v~~~Al~aL~nLs 596 (729)
. -.+.+++..=...+..++...+....|++. ...+-. .+..+.|..++.. . +-+.....+.||.+|+
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 5 112222222122235566666666666654 222211 3445555444432 1 3345667788999999
Q ss_pred cCcHHHHHHHHcCcHHHHHHhc
Q 004806 597 IYHENKARIVQAGAVKHLVDLM 618 (729)
Q Consensus 597 ~~~en~~~lv~~G~V~~Lv~LL 618 (729)
..+....++.+.--|..++.-+
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHH
Confidence 8888888887766677776665
No 240
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.98 E-value=4 Score=42.96 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=111.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcC--CHHHHHHHhcC----CCHHHHHHHHHHHHHhccCcchh
Q 004806 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 488 I~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g--~I~~Lv~lL~s----~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
+..+..++.....+-+--++-.+.-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4455555555544445566667766666665555554432 24445555433 35778889999999998888888
Q ss_pred hhhhcc-C-cHHHHHHhhcCC----CHHHHHHHHHHHHhcccCc-HHH-HHHHHcCcHHHHHHhc-C--CCHHHHHHHHH
Q 004806 562 IKIGRS-G-AIGPLVDLLGNG----TPRGKKDAATALFNLSIYH-ENK-ARIVQAGAVKHLVDLM-D--PAAGMVDKAVA 630 (729)
Q Consensus 562 ~~I~~~-g-~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~-en~-~~lv~~G~V~~Lv~LL-~--~~~~v~e~Al~ 630 (729)
..+... + .+-..+..+... +..++..++.+++|++..- ..+ ..-....++..+++.+ . .+.+..-.++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 777665 3 444444444444 6788889999999997621 111 1111222455566633 2 57888899999
Q ss_pred HHHHHhCCcchHHHHHhCCcHHHHH-HHH-ccCCHHHHHHHH
Q 004806 631 VLANLATIPDGRVAIGQENGIPVLV-EVV-ELGSARGKENAA 670 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~~g~I~~Lv-~lL-~s~s~~~ke~A~ 670 (729)
+|++|.............-++...+ ..- ....++.++.+.
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 9999998777766666643333333 332 335566666543
No 241
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=88.58 E-value=19 Score=40.01 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhh-cCCccHHH-HHhcCCH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAVTALLNLS-INDNNKSA-IANANAI 529 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-----d~~v~e~Al~aL~nLs-~~~~~k~~-I~~~g~I 529 (729)
+.++..+|+++|.++.+++...|....+......++.++... ...+...=+..|.-|. .....|.+ +++.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 346788999999999999999999988887777777766431 1223344455554443 23444444 5677999
Q ss_pred HHHHHHhcCC---------C------HHHHHHHHHHHHHhccC
Q 004806 530 EPLIHVLQTG---------S------PEARENAAATLFSLSVI 557 (729)
Q Consensus 530 ~~Lv~lL~s~---------~------~e~r~~Aa~aL~nLS~~ 557 (729)
+.+...|.+. . ......++.+++|+..+
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 9999988632 1 23455788889999774
No 242
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.40 E-value=9.6 Score=46.04 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=113.1
Q ss_pred HHHHhhc-CCccHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhccCcHH--HHHHhhcCCCH-H
Q 004806 509 ALLNLSI-NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIG--PLVDLLGNGTP-R 583 (729)
Q Consensus 509 aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~--~Lv~LL~~~~~-~ 583 (729)
+|+++.. ++.+...+.+.|++..+.+.++.- ..+++..+.+.|.+++...+.+........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 3444433 356677888999999999999854 47788899999999987665544433322222 22223333333 5
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHH-HHHHHc-cC
Q 004806 584 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPV-LVEVVE-LG 661 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~-Lv~lL~-s~ 661 (729)
.-..|+..|..+..+.+.. ...+ ....+.+.....+... ......+.....+.. +..++. +.
T Consensus 574 rsY~~~siLa~ll~~~~~~---~~~~----------~r~~~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~~~il~~s~ 637 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---TECV----------FRNSVNELLVEAISRW---LTSEIRVINDRSFFPRILRILRLSK 637 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---cccc----------chHHHHHHHHHHhhcc---CccceeehhhhhcchhHHHHhcccC
Confidence 5566666666665533220 0000 0111111111111111 111111111122222 444553 46
Q ss_pred CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHh
Q 004806 662 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYF 718 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L 718 (729)
.+..+..|++++.+++...++++..+.+.|+++.+..+.... ...++..+..++...
T Consensus 638 ~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 638 SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 788999999999999999999999999999999998875443 456666666665544
No 243
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.39 E-value=2.9 Score=50.04 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=109.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 614 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~L 614 (729)
.+.++-..+|..++..|..+....+.+..+...+++...++.|++.++-+--.|...+..||.- .....++.|
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3444456678888888888887666666677779999999999999988888888877777651 223456666
Q ss_pred HH-hcC----CCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 004806 615 VD-LMD----PAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 688 (729)
Q Consensus 615 v~-LL~----~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl 688 (729)
.+ ... ...+.+-.+..++.+++.. .+-.... .+-.+...+..++.++..-+..++.+|.+||.........++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 66 331 1123333444555554431 1111111 112345556666666666788889999999876542222222
Q ss_pred hCCCHHHHHHhhhCCC-HHHHHHHHHHHHHhhc
Q 004806 689 QEGAVPPLVALSQSGT-PRAKEKAQALLSYFRN 720 (729)
Q Consensus 689 ~~G~v~~Lv~Ll~sg~-~rvr~~A~~lL~~L~~ 720 (729)
- .++..++.+.+.+. .-+|+.|..++..+-+
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 2 14566666666554 6788888887766544
No 244
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.37 E-value=7.4 Score=43.95 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
...+..++.... ..++..+..++..+..+...-+..- .+ ..++..+...+ ...+...+..++.++..+. |
T Consensus 188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----K 259 (415)
T PF12460_consen 188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----K 259 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----H
Confidence 457888888865 4456777888888888876521111 11 12333333333 2333444444444444332 2
Q ss_pred HHHHh-----cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cch--------hhhhhcc----CcHHHHHHhhcCCCH
Q 004806 521 SAIAN-----ANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDN--------KIKIGRS----GAIGPLVDLLGNGTP 582 (729)
Q Consensus 521 ~~I~~-----~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~--------k~~I~~~----g~I~~Lv~LL~~~~~ 582 (729)
..++. ...+..|+.+|.+ +++...|+..+.-|..+ ++. -..+... ..+|.|++-.+..+.
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 22222 1356678888866 66777888888877665 332 1122222 456777777777676
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCc
Q 004806 583 RGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~ 639 (729)
..+...+.||.+|..+-.....+-+ ...+|.|++-|+ ++..++..++.+|..+....
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 6888888899998774332222222 457888888885 66778888999999888754
No 245
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=88.31 E-value=52 Score=37.52 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=111.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHhcCCHHHHHHHhcCCC-----HH--HHHHHHHHHHHhccCcc
Q 004806 491 LVDMLHSSETKIQENAVTALLNLSIN----DNNKSAIANANAIEPLIHVLQTGS-----PE--ARENAAATLFSLSVIED 559 (729)
Q Consensus 491 Lv~LL~s~d~~v~e~Al~aL~nLs~~----~~~k~~I~~~g~I~~Lv~lL~s~~-----~e--~r~~Aa~aL~nLS~~~e 559 (729)
+..++...+.+=+-.|+-..-.+..+ ..+|+.+.++-+.+-+=++|.+++ ++ .+.-+..+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 44455544444444455445555543 246778888877777888887542 22 45566777777777666
Q ss_pred hhhhhhccCcHHHHHHhhcCC-CH------HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHH
Q 004806 560 NKIKIGRSGAIGPLVDLLGNG-TP------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVA 630 (729)
Q Consensus 560 ~k~~I~~~g~I~~Lv~LL~~~-~~------~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~ 630 (729)
....----..||.|..++..+ ++ -+..++..+|..++..+.+...++..|+++.+.++-. ....-...++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 432211126789998888754 22 3678899999999999999999999999999998752 21212233344
Q ss_pred HHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 631 VLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 631 ~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
++..+.. .++.-..+..- |..+..=+...+...+...+..|..+-.
T Consensus 176 Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4433332 22222222211 3333333344455667777777765433
No 246
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.26 E-value=9.7 Score=42.56 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=130.5
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHH--------HHHhcCCHH
Q 004806 463 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----DNNKS--------AIANANAIE 530 (729)
Q Consensus 463 ~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~----~~~k~--------~I~~~g~I~ 530 (729)
.|++.|-.+....+..-..+.+.+++..++..|..+-..+.+. -.+...+ +..+. .......+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 3555666666655566667788999999999986432222221 0011100 11111 112223444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-C---cchhhhhhc-cCcHHHHHHhhcCC---CHHHHHHHHHHHHhcccC-cHH
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSV-I---EDNKIKIGR-SGAIGPLVDLLGNG---TPRGKKDAATALFNLSIY-HEN 601 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~---~e~k~~I~~-~g~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~-~en 601 (729)
.|++++. .+.. . .+.-..+.+ ......|..++++. .+.+...|+.++..+-.+ +..
T Consensus 79 ~lLk~l~---------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~ 143 (379)
T PF06025_consen 79 SLLKFLS---------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS 143 (379)
T ss_pred HHHHHHH---------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence 4444332 1111 1 111122334 34455566667665 467888888888887664 455
Q ss_pred HHHHHHcCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCH-------HHHHHH
Q 004806 602 KARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA-------RGKENA 669 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~-------~~ke~A 669 (729)
-..+.++|+++.+++.+. +..++....-.+|..||-+..|.+.+.+.+.+..+++++.+..- .....-
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNL 223 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence 667778999999998773 45666666778999999999999999999999999999876321 112222
Q ss_pred HHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh
Q 004806 670 AAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 701 (729)
Q Consensus 670 ~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~ 701 (729)
-..+-.|.++.+..+..+++. ++..|-++..
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~~ 254 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIIDA-IIKILDRLVE 254 (379)
T ss_pred HHHHHHHHccCHHHHHHHHHH-HHHHHHHHHH
Confidence 334556777877777666654 3333333333
No 247
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.18 E-value=1.8 Score=42.70 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=62.3
Q ss_pred HHHHHHcCcHHHHHHhcC----------CCHHHHHHHHHHHHHHhCCcchHHHHHh-CCcHHHHHHHHccCCHHHHHHHH
Q 004806 602 KARIVQAGAVKHLVDLMD----------PAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL~----------~~~~v~e~Al~~L~nLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
...|++.|++..|+++|. .+......++.+|..|..+..|...++. .+++..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 456788899999999871 2345677899999999999999988886 56799999999999999999999
Q ss_pred HHHHHHhh
Q 004806 671 AALLQLCT 678 (729)
Q Consensus 671 ~aL~nL~~ 678 (729)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999883
No 248
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=11 Score=45.40 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.......+..+.++.+.++..|+..|+.+.... +....+...+++...+..|++.|+-+--+|+..+..|+.-
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence 445677778888888889999999999999854 4555666779999999999999999988888877666531
Q ss_pred HHhcCCHHHHHH-HhcCCC---HHHHHHHHHHHHHhccCcchhhhhhc---cCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIH-VLQTGS---PEARENAAATLFSLSVIEDNKIKIGR---SGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~-lL~s~~---~e~r~~Aa~aL~nLS~~~e~k~~I~~---~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.....++.|.. ..+... ++.+...-.++.++..- +..++. .-.+...+..+++++...+..++.++++|
T Consensus 799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa---~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA---LGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 22345565555 232211 23333333444433210 000000 01223333334455556677777777777
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhC
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 637 (729)
|.--..+..=.=..++..++.+. +...-++..|+-++..+-.
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 65222111001122344444444 2334455666666666554
No 249
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.92 E-value=18 Score=41.05 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=98.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCcc----hhhhhhccCcHHHHHHhhcCC-------CHHHHHHHHHHHHhcccCc
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~~~-------~~~v~~~Al~aL~nLs~~~ 599 (729)
.+..++...+.+-+-.|+-....+..+++ +|..+.+.-+++-+-.+|.+. +.-.+..++..|...|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 34555655566666566655666665433 577788887788888888753 2334566777888888877
Q ss_pred HHHHHHHHcCcHHHHHHhcC----CC----HHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC-HHHHHHHH
Q 004806 600 ENKARIVQAGAVKHLVDLMD----PA----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAA 670 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~----~~----~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~A~ 670 (729)
+....----..||.|++++. ++ ..+++.+-.+|..+++.+.|...++..|+++.+.++-...+ .-..+-|+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal 174 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALAL 174 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHH
Confidence 75432222347899999882 22 34789999999999999999999999999999987754432 22233344
Q ss_pred HHHHHH
Q 004806 671 AALLQL 676 (729)
Q Consensus 671 ~aL~nL 676 (729)
.++.-+
T Consensus 175 ~Vlll~ 180 (698)
T KOG2611|consen 175 KVLLLL 180 (698)
T ss_pred HHHHHH
Confidence 444433
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=3.8 Score=49.01 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=33.1
Q ss_pred ccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCc
Q 004806 141 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQ 183 (729)
Q Consensus 141 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 183 (729)
=.|..|...+.=|++ -.|||.|-+.|.+ .+...||.|+-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 479999999999998 5899999999988 44466999964
No 251
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.23 E-value=4.5 Score=50.09 Aligned_cols=142 Identities=21% Similarity=0.156 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLK----STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~----s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~ 517 (729)
....+.+++..+ .++++.|..|..+|..|.--+.+... -..|.|+..+. ++++.++-+++.+|+.|+..-
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 456777777774 45799999999999887664432222 35789999997 789999999999999997542
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
++- -...-+.|.+.|.+.++.+|..|..+|.+|-.++.. --.|.++.+..+|.+++.+++..|-.....|+.
T Consensus 993 pnl----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi----KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 993 PNL----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI----KVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh----HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 211 112345677888899999999999999999654433 336999999999999999988877755555543
No 252
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=87.18 E-value=18 Score=38.16 Aligned_cols=195 Identities=24% Similarity=0.257 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~-- 518 (729)
...|+.|+.-|... .+-++.+|..+|..+.. . +..+.|-+..+++...+.+....+|..+-....
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 45678888887744 45567788888877652 1 345566666655666666655555555532110
Q ss_pred ---cHHHH--------HhcCCHHHHHHHhcCCC-HHH-HHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHH
Q 004806 519 ---NKSAI--------ANANAIEPLIHVLQTGS-PEA-RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 585 (729)
Q Consensus 519 ---~k~~I--------~~~g~I~~Lv~lL~s~~-~e~-r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~ 585 (729)
+.... ...+-+..|-..|...+ +.. ++.|.-.|.|+ +...+|..|++=|..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHH
Confidence 00011 11122444444444333 222 33333334433 224567777877887888888
Q ss_pred HHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-C--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC
Q 004806 586 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 662 (729)
Q Consensus 586 ~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 662 (729)
..++.++..| ...-+|+.|.+.| + +..-++..|+.+|+.++. ...++.|.+++....
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 8888888876 2334678888877 2 445567788888888774 346788888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 004806 663 ARGKENAAAALLQLCT 678 (729)
Q Consensus 663 ~~~ke~A~~aL~nL~~ 678 (729)
+-+++.|..+|-.+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877755443
No 253
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=0.33 Score=55.66 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=41.9
Q ss_pred CcccccCccccc----cCceecCCCccccHHHHHHHHhcCCCCCC--CCCcc--CCCCCCcccHHHHHHHHH
Q 004806 139 SDFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCP--KTRQT--LAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 139 ~~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~~~~~~~~cP--~t~~~--l~~~~l~pN~~l~~~I~~ 202 (729)
+-++|+||..+| ..||.+-||||.||.|.+.-... +|| .-.-. ...+.+.-|++|-+.+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhcc
Confidence 347899997776 57999999999999999987765 477 22111 122345557777665543
No 254
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.53 E-value=0.46 Score=50.58 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.2
Q ss_pred CcccccCccccccC--cee--cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 139 SDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 139 ~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
+++ ||+|.+-|.- --. -+||+..||-|-...-+.-+..||.||..++.+..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 455 9999998742 222 36899999999655444434569999998887643
No 255
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.31 E-value=16 Score=44.76 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
+.+.+-..+.+.++..+.+|+..+........ ........|.+..++.... +.+..+.-.|+.+|..|+..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34555566667888888999999887776432 1111111233444444332 346667777888887776431111111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-Cc-HH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YH-EN 601 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~-en 601 (729)
...+.++.|+.-+......++..+..++-..+. .-.....++.+...++++++.++..+...+..... .. .+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 233677888888877766676666655554432 11112567778888999999998887776665433 22 22
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...-.-.++++.++... +.+..++..|..+++.+-.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 22223345666666666 6778888877777665543
No 256
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=86.28 E-value=3.3 Score=43.63 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhcccCcHHHHHHHHcC--cHHHHHHhc-CC----CHHHHHHHHHHHHHHhCCc-chHH-HHHhCCc
Q 004806 580 GTPRGKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLM-DP----AAGMVDKAVAVLANLATIP-DGRV-AIGQENG 650 (729)
Q Consensus 580 ~~~~v~~~Al~aL~nLs~~~en~~~lv~~G--~V~~Lv~LL-~~----~~~v~e~Al~~L~nLa~~~-e~r~-~i~~~g~ 650 (729)
..+..+..+++++.|+-.+...+..+.+.. .+-..+..+ .. +..++..+..++.|++..- ..+. .=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 467788889999999988888888777633 233333333 33 4566677778888887511 0000 0000112
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC-CCHHHHHHHHHH
Q 004806 651 IPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQAL 714 (729)
Q Consensus 651 I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s-g~~rvr~~A~~l 714 (729)
+..+++.+.. .++++..+++.+|++|+..++.........|+...+...... ..+|+++.+.+|
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4555553322 689999999999999998776555555445666665555544 458999888765
No 257
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=0.5 Score=51.32 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=37.9
Q ss_pred CCcccccCccccccCcee-----c-CCCccccHHHHHHHHhcCCC--CCCCCCccCCCCCCc
Q 004806 138 PSDFCCPLSLELMTDPVI-----V-ASGQTYERAFIKKWIDLGLF--VCPKTRQTLAHTTLI 191 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~-----~-~~G~ty~r~~I~~~~~~~~~--~cP~t~~~l~~~~l~ 191 (729)
|---.|.||-+.+ |+. + .|||+|.-.|+.+||+..+. +||.|+-.+......
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 3345699996654 442 3 49999999999999997655 699998556554443
No 258
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.63 E-value=1.4 Score=30.45 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
.+|.|++++.+++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998863
No 259
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.91 E-value=17 Score=43.96 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=82.6
Q ss_pred HHHHHcCcHHHHHHhcC---------CCHHHHHHHHHHHHHHhCCcchHHHHHhC--------CcHHHHHHHHcc----C
Q 004806 603 ARIVQAGAVKHLVDLMD---------PAAGMVDKAVAVLANLATIPDGRVAIGQE--------NGIPVLVEVVEL----G 661 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL~---------~~~~v~e~Al~~L~nLa~~~e~r~~i~~~--------g~I~~Lv~lL~s----~ 661 (729)
..+.+.++|..++++.. +..+++..|+.+|..+...++.+.+++.. .||..++..-.. .
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 45667788888888862 23578889999999999999999888642 145555444321 4
Q ss_pred CHHHHHHHHHHHHHHhhCCHh-----------------------------------hHHHHHhCCCHHHHHHhhhCCC--
Q 004806 662 SARGKENAAAALLQLCTNSSR-----------------------------------FCSMVLQEGAVPPLVALSQSGT-- 704 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~-----------------------------------~~~~vl~~G~v~~Lv~Ll~sg~-- 704 (729)
++..+..|+.+|.|+.+..+. ....|....+|..|++|++...
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 789999999999887654311 1223344578999999998653
Q ss_pred ---HHHHHHHHHHHHHhhcC
Q 004806 705 ---PRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 705 ---~rvr~~A~~lL~~L~~~ 721 (729)
..+|.-|...|--|.++
T Consensus 755 t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CcHHHHHHHHHHHHhccccC
Confidence 45777777777666554
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.44 E-value=34 Score=41.71 Aligned_cols=229 Identities=15% Similarity=0.097 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH--hcCCHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA--NANAIEP 531 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k~~I~--~~g~I~~ 531 (729)
+..+..-..|...+..++....-+...+- -+....+..+.-+ .+-++..|+.+++-.+. ...+. ..+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 44555555666666655543222222211 1223333333332 34455666666655441 11111 2356777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHhcccCcHHHHHHHHcC
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAG 609 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G 609 (729)
|+++....+.++.-.-+.+|+..+..+.....-.+.-..|..+.++. +.++.+...+-.++..|+....|. .-....
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHH
Confidence 88888777788888888888888876555555555666777766654 457777777777777776633332 223455
Q ss_pred cHHHHHHhcC-CC----HHHHHHHHHHHHHHhCCcch--HHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 004806 610 AVKHLVDLMD-PA----AGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 610 ~V~~Lv~LL~-~~----~~v~e~Al~~L~nLa~~~e~--r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+|.|+..|. +. ..++..++.+|..+....+. -..+. .-+.|.+.+.. .+++.....+|-.+|..+...+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 8999999983 22 56777788888877663322 22222 23456666665 56778888899999999888876
Q ss_pred hhHHHHHhCC
Q 004806 682 RFCSMVLQEG 691 (729)
Q Consensus 682 ~~~~~vl~~G 691 (729)
+....--.++
T Consensus 693 eq~~t~~~e~ 702 (1005)
T KOG2274|consen 693 EQLLTWHDEP 702 (1005)
T ss_pred HHHHhhccCC
Confidence 5443333333
No 261
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=0.61 Score=50.48 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
..+.|-.-.|-||.+=.++-|.+||||+.| |+.-... ...||+||+..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 445677778999999999999999999988 5544333 24599999865
No 262
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.00 E-value=86 Score=35.94 Aligned_cols=261 Identities=13% Similarity=0.099 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
...++..+....++++...+..|++.|.+.+..-+.....-. .-.+..++.-| +..+.+|+-+|+.+|.-+...-.+.
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 356777788888888888888999999999987443222222 23344555544 4457888888888887665322111
Q ss_pred HHHHhcCCH---HHHHHHhcCCCHHHHHHHHHHHHHhccCcch--hhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 521 SAIANANAI---EPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 521 ~~I~~~g~I---~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~--k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
. .+.+.+ -.+..+..+.+++++.+|..+...|+..... +..+.+ .+...+|+.-|.+.++.+-.+ ++...
T Consensus 335 ~--l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A-Cr~~~ 411 (533)
T KOG2032|consen 335 D--LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA-CRSEL 411 (533)
T ss_pred c--hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH-HHHHH
Confidence 1 122223 3455677888899999999888888764333 233332 134455556667777765543 34433
Q ss_pred hcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHH-----Hh-CCcchHHHHHhCCcHHHHHHHHccCCHHHHH
Q 004806 594 NLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN-----LA-TIPDGRVAIGQENGIPVLVEVVELGSARGKE 667 (729)
Q Consensus 594 nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~n-----La-~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke 667 (729)
..|.-.-.+. ...++++..++. .+. -...+.| |. .+++--..+ ......++.+.-+.+++
T Consensus 412 ~~c~p~l~rk--e~~~~~q~~ld~-----~~~--~~q~Fyn~~c~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~ 477 (533)
T KOG2032|consen 412 RTCYPNLVRK--ELYHLFQESLDT-----DMA--RFQAFYNQWCIQLNHIHPDILMLL-----LTEDQHIFSSSWEQVRE 477 (533)
T ss_pred HhcCchhHHH--HHHHHHhhhhHH-----hHH--HHHHHHHHHHHHHhhhCHHHHHHH-----HHhchhheecchHHHHH
Confidence 3333222222 112222222211 110 1111111 11 111110000 11112222333334454
Q ss_pred HHHHHHHHHhhCC-HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 668 NAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 668 ~A~~aL~nL~~~~-~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.|+..-.++.-+- +.++..+-..-....|..+.+...+.+++.|..+|..+..
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 4444333333222 2233333222345667777778889999999888877654
No 263
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.90 E-value=19 Score=42.41 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=102.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh----cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc-
Q 004806 493 DMLHSSETKIQENAVTALLNLSINDNNKSAIAN----ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 567 (729)
Q Consensus 493 ~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~----~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~- 567 (729)
..|.....+++--|+-+|.-+..+...-..+.. +..+..++..+. +.+..+..++++|.|+-.+...+..+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344445666777777777666655433333222 246666666666 66778889999999998876666655433
Q ss_pred -CcHHHHHHhhcCCCHHHHHHHHHHHHhccc--CcHHHHHHHHcCcHHHHHHhc----CC--CHHHHHHHHHHHHHHhCC
Q 004806 568 -GAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM----DP--AAGMVDKAVAVLANLATI 638 (729)
Q Consensus 568 -g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL----~~--~~~v~e~Al~~L~nLa~~ 638 (729)
-.+..++..=...+..++.+-+....|++. ...+-+ .|..+.|..++ ++ +.+..-.++.+|.+|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 122222222122245556555555666654 122211 45555555544 32 223344677889999998
Q ss_pred cchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHH
Q 004806 639 PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAA 672 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~a 672 (729)
+.....+.+.-.+..+++.+++ .+.....+.+..
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 8888888887778888888865 333333333333
No 264
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.38 E-value=36 Score=40.49 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=75.5
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.|.+..|++...+++..|+...+.+|..|+.........+-.+....|..-|.+..+.+|..|+.+|..+=.++..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 36777788888889999999999999888653333333344566677777777888999999999999885321111
Q ss_pred hccCcHHHHHHhhcC-CCHHHHHHHHHHHHh
Q 004806 565 GRSGAIGPLVDLLGN-GTPRGKKDAATALFN 594 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~n 594 (729)
+..+...++.+++. +++++++.|+..|.+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 12566778888875 578999887665543
No 265
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.17 E-value=57 Score=35.67 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cChhhHHHHHh-cCc-HHHHHHHHcCC-----C--------HHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAK-HNMDNRMVIAN-CGA-INILVDMLHSS-----E--------TKIQENA 506 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~-~s~~nr~~I~~-~Ga-I~~Lv~LL~s~-----d--------~~v~e~A 506 (729)
...++.+.+.|.+.....+..+++.|..++. .+......+.. -+. .+.|..++.-. + +.++...
T Consensus 55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 3457888888888888888899999999888 66454444444 344 44566666321 1 2778888
Q ss_pred HHHHHHhhc--CCccHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHH-hccC----cchhhhhhccCcHHHHHHhhc
Q 004806 507 VTALLNLSI--NDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFS-LSVI----EDNKIKIGRSGAIGPLVDLLG 578 (729)
Q Consensus 507 l~aL~nLs~--~~~~k~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~n-LS~~----~e~k~~I~~~g~I~~Lv~LL~ 578 (729)
+..+..+.. ++..+..+.+. +.+..+.+-|.....++....+.+|.. +..+ ...|..+....++..|+.+..
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 877666543 34456666654 678888999989889999999988885 3333 234666777789999999887
Q ss_pred CCCH----HHHHHHHHHHHhcccCcH
Q 004806 579 NGTP----RGKKDAATALFNLSIYHE 600 (729)
Q Consensus 579 ~~~~----~v~~~Al~aL~nLs~~~e 600 (729)
..+. .+...+-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 7666 778888888888886543
No 266
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.96 E-value=0.57 Score=55.95 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=33.9
Q ss_pred cccCcccccc--C---ceec--CCCccccHHHHHHHHhcC-CCCCCCCCccCC
Q 004806 142 CCPLSLELMT--D---PVIV--ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 186 (729)
Q Consensus 142 ~CpI~~~lm~--d---PV~~--~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~ 186 (729)
.|+||..+.. | |--. .|.|.|--+|+-+|+..+ ..+||.||..++
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999998864 3 2221 267899999999999865 467999997654
No 267
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.71 E-value=22 Score=41.56 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..+..+++++...+..+|.+|++.|-.+|+++++....+ +..|+.+|.++++.-...+-.+|..|...+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d----- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD----- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-----
Confidence 5678899999999999999999999999999877766665 568999999888664444444554442111
Q ss_pred HHhcCCHHHHHHHhc---CCCHHHHHHHHHHHH
Q 004806 523 IANANAIEPLIHVLQ---TGSPEARENAAATLF 552 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~---s~~~e~r~~Aa~aL~ 552 (729)
-.+.+..|...+. +++..+|+.+...|.
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1234555555444 566667877776664
No 268
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.49 E-value=1.1 Score=50.14 Aligned_cols=178 Identities=17% Similarity=0.090 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc----C-CccHHHHHh--cCCHHHH
Q 004806 460 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI----N-DNNKSAIAN--ANAIEPL 532 (729)
Q Consensus 460 vq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~----~-~~~k~~I~~--~g~I~~L 532 (729)
++.+|++++.-+.-+..-....+--.++...++..|.+..-..++.+.+++.|++. + +..+..--. .-.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34456666665555443222333334666777777777777889999999999952 1 222222111 1123333
Q ss_pred HHHhc---CCCHHHHHHHHHHHHHhccCcch--h--hhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhcccCcHHHHH
Q 004806 533 IHVLQ---TGSPEARENAAATLFSLSVIEDN--K--IKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKAR 604 (729)
Q Consensus 533 v~lL~---s~~~e~r~~Aa~aL~nLS~~~e~--k--~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~en~~~ 604 (729)
+..-. .....++.+|..+|.|++..-+. + ......+.+..+... +-.+...++-+|+.+|.||-.++.-+-.
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 33222 22367999999999999763221 1 111112444444332 3345778999999999999876543211
Q ss_pred --HHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhC
Q 004806 605 --IVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 605 --lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 637 (729)
=...-+++.|..|+ ..+..++..|.++|..-..
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 12234667777777 3566777788888776655
No 269
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.45 E-value=46 Score=41.25 Aligned_cols=220 Identities=19% Similarity=0.214 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCC--------HH----HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC----------CCHH
Q 004806 444 TQVRKLVEDLKSTS--------LD----TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----------SETK 501 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~--------~e----vq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s----------~d~~ 501 (729)
..+-.||..|+++- .+ ....-+..++.....+...+..++++|++.+|...|.. .|.-
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 45556777777631 11 22334566777776677888899999888888887732 1222
Q ss_pred HHHHHHHHHHHh---h--cCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh--hccCcHHHHH
Q 004806 502 IQENAVTALLNL---S--INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI--GRSGAIGPLV 574 (729)
Q Consensus 502 v~e~Al~aL~nL---s--~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I--~~~g~I~~Lv 574 (729)
+...-..+|..+ + .+..|+..+-..-.-..+..+|+... |-.....|..| ...-++
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresg-------------llcvnler~viqlllElal---- 862 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESG-------------LLCVNLERHVIQLLLELAL---- 862 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhc-------------cceecchHHHHHHHHHHHH----
Confidence 223333444333 2 23344433322212222333332111 00111111111 001111
Q ss_pred HhhcCCCHHHHHHHHHHHHhccc-----------CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-Ccch
Q 004806 575 DLLGNGTPRGKKDAATALFNLSI-----------YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDG 641 (729)
Q Consensus 575 ~LL~~~~~~v~~~Al~aL~nLs~-----------~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~ 641 (729)
+.+..+....-..|+..+..+-. ....++++..+|++..|++.+ ...+.+.-.-+.+|..++. ++.+
T Consensus 863 evlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfn 942 (2799)
T KOG1788|consen 863 EVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFN 942 (2799)
T ss_pred HhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCc
Confidence 11222222223344444544321 234678899999999999966 6677888888899999988 6667
Q ss_pred HHHHHhCCcHHHHHHHH---ccCCHHHHHHHHHHHHHHhhCC
Q 004806 642 RVAIGQENGIPVLVEVV---ELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL---~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
.+.....|.+..|++++ .+++....-+|..++--||...
T Consensus 943 aelltS~gcvellleIiypflsgsspfLshalkIvemLgayr 984 (2799)
T KOG1788|consen 943 AELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYR 984 (2799)
T ss_pred hhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhcc
Confidence 77777789999999887 4566666677788877777653
No 270
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.25 E-value=2.8 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 651 IPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 651 I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+|.+++++...++.++..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998864
No 271
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.80 E-value=19 Score=42.93 Aligned_cols=132 Identities=22% Similarity=0.216 Sum_probs=87.3
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
++=+.+-.++.+.|+-++...+.++. |+..- -..+++|..|+++ .++.+.++|..|+-+|.-++..+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~G-----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------ 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLA-LAYVG-----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------ 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHH-HHHhc-----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecC------
Confidence 55566667778888888888777663 32110 0123577888887 66778999999999988765532
Q ss_pred hccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 565 GRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
....+..|.+|.. .++-++-.|+.+|.--|....++.. +..|-.|. ++..-++..|+-+++.+..
T Consensus 587 --p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 587 --PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 2456677777764 5899999999999988776555542 23333333 3444566667777776543
No 272
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=81.62 E-value=1.2 Score=45.33 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=48.9
Q ss_pred cccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHH--HHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTV--KALIANWCE 205 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l--~~~I~~~~~ 205 (729)
+.+|||++.-..-|++- .|.|.|||..|..+++-. ...||. |-+.+..+.++-.+.| |..|...++
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~ 260 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRN 260 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHh
Confidence 35899999999999874 799999999999999843 235886 6666777777766655 444444433
No 273
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.50 E-value=20 Score=43.47 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 522 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~-s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~ 522 (729)
.++.....++....+.+..++.....++.. +...+..+...-.+|.+-.+..+.+..++...+..+.+++-- +..+
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-- 433 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-- 433 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc--
Confidence 456666677766666666666666666553 223344555556678887888777777776666665555321 1000
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
.-...++.++..++...++++.+....+..+-. ++.....+...-.++.++.+-.....+++.+....+.-++.
T Consensus 434 -ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 434 -TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred -CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 012355666777778788888887766655433 23334444445667777777666677777777777776655
No 274
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.43 E-value=58 Score=34.49 Aligned_cols=214 Identities=18% Similarity=0.155 Sum_probs=122.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCc-cHHHHHh
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDN-NKSAIAN 525 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~-~k~~I~~ 525 (729)
|=..|.++++.+|..|+..|......-+... ....-+..|+.++.+ +|......++.+|..|..... .... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--A 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--H
Confidence 4456788888999999998887665433221 222336667766644 466666666777776653222 1111 0
Q ss_pred cCCHHHHHHHhc--CCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcH
Q 004806 526 ANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 526 ~g~I~~Lv~lL~--s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~e 600 (729)
...+..+.+-.. +-....|..+..+|..|... ....+.. .+.+..+++++..+ +|+....+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 111222222111 12245677777777777543 2223322 36778888888755 88888877777776654222
Q ss_pred HHHHHHHcCcHHHHHHhc--------CC--CH--HHH--HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHH
Q 004806 601 NKARIVQAGAVKHLVDLM--------DP--AA--GMV--DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 666 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL--------~~--~~--~v~--e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~k 666 (729)
. ...++.|.+.+ .+ +. ++. +...++...|+.++.- ..-++|.|++.|.+.++.+|
T Consensus 157 ~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 1 22333444433 11 11 222 2233444445544322 23468999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 004806 667 ENAAAALLQLCTNS 680 (729)
Q Consensus 667 e~A~~aL~nL~~~~ 680 (729)
..+..+|..++..-
T Consensus 226 ~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 226 LDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999998877654
No 275
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=81.28 E-value=1.5 Score=37.15 Aligned_cols=44 Identities=34% Similarity=0.573 Sum_probs=32.1
Q ss_pred cccCcccccc----Cceec-CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 142 CCPLSLELMT----DPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 142 ~CpI~~~lm~----dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
.||-|+-=|. =||+- -|.|.|---||.+|+... ..||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence 4666665441 13433 589999999999999985 56999999853
No 276
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.25 E-value=2.5 Score=43.83 Aligned_cols=79 Identities=25% Similarity=0.233 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHc-------CcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchH--HHHHhCCcH
Q 004806 583 RGKKDAATALFNLSIYHENKARIVQA-------GAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR--VAIGQENGI 651 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~en~~~lv~~-------G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r--~~i~~~g~I 651 (729)
.-++.|+.+|+.||..+.|..-++.- ..+..|++++ ..+.-.+|.|+.+|.+||...+.. ..-.+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45889999999999988888766653 3556666776 356677899999999999966653 333567889
Q ss_pred HHHHHHHccC
Q 004806 652 PVLVEVVELG 661 (729)
Q Consensus 652 ~~Lv~lL~s~ 661 (729)
..|+.+++..
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 277
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.94 E-value=8.7 Score=39.42 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----~d~~v~e~Al~aL~nLs~~~~--~k~~I~~~g~I~~Lv~ 534 (729)
..|+..|.-++.+ ++.+..+.++-+--.|..+|.. ..+.++..++.+++.|..++. .-..+.....+|.+++
T Consensus 118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4678888888884 6788888887665566666643 235577888999999877643 3444556689999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHH-HhhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLV-DLLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv-~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
++..|+.-.+.-|+.++..+-.++..-..|... ..+..++ ++...+..+..+.++++-..||..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 999999888888887777766666554433321 2333333 3344568899999999999999888877644
No 278
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=80.67 E-value=56 Score=38.42 Aligned_cols=164 Identities=19% Similarity=0.130 Sum_probs=85.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHhccc----C
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSI----Y 598 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~ 598 (729)
++..+.+.+.++..... .++.++..+... .... ...+..+..+++++ ...++..|+.++.+|.. .
T Consensus 358 a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 358 ALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPT-----EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 56667777777653221 222222222110 1111 24567777777754 45566667777766642 2
Q ss_pred cHHHHHHHHcCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc---cCCHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE---LGSARGKENAA 670 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~---s~s~~~ke~A~ 670 (729)
.+.+...+....++.|...|. .+..-+..++.+|+|+... ..+..|..++. ..+..++..|+
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av 501 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAI 501 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 222112222345566666551 2223334456666665531 23555555554 23578899999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHHHHHHHHHHH
Q 004806 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 715 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~A~~lL 715 (729)
++|..++...+. .+.+.|+.+..+. .+++|-.|..+|
T Consensus 502 ~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 502 LALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 999988765543 1344455555553 356666655544
No 279
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.64 E-value=55 Score=36.97 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=80.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-c--------HHHHHHHHcC----cHHHHHHhcC-CCHHHHHHHHHHHH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIY-H--------ENKARIVQAG----AVKHLVDLMD-PAAGMVDKAVAVLA 633 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~--------en~~~lv~~G----~V~~Lv~LL~-~~~~v~e~Al~~L~ 633 (729)
..+..|+.+|.+ +.+...|+.++.-|..+ + .+..-+.+.. .+|.|++... .+...+...+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 345667777776 55667777777776654 2 2333344433 4555555553 34446677788888
Q ss_pred HHhCCcchHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHH
Q 004806 634 NLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 698 (729)
Q Consensus 634 nLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~ 698 (729)
+|..+-.....+-+ ...+|.|++-|...+..++..+..+|..+....+.....=++ ..|+.|++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 88875443222222 236899999999899999999999999999887643332111 34555544
No 280
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.62 E-value=1.4 Score=47.42 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=47.3
Q ss_pred cccCcccccc------CceecCCCccccHHHHHHHHhcCCCCCCCCCccC--C---CCCCcccHHHHHHHHHH
Q 004806 142 CCPLSLELMT------DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL--A---HTTLIPNYTVKALIANW 203 (729)
Q Consensus 142 ~CpI~~~lm~------dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l--~---~~~l~pN~~l~~~I~~~ 203 (729)
.|=||.+-+. -|=++.||||+|..|+.+.+..+.-.||+||.+. . .+.|..|+.+-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3555554443 3556779999999999999988777799999983 2 24778888888888776
No 281
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.55 E-value=99 Score=37.18 Aligned_cols=150 Identities=18% Similarity=0.144 Sum_probs=84.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCc
Q 004806 533 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHENKARIVQAGA 610 (729)
Q Consensus 533 v~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~ 610 (729)
-+++.+.++-+|...+.++.. +.. --+..++|..|+.+ ..+.+.++++.|+.+|.-++. +++ .
T Consensus 525 ~el~~dkdpilR~~Gm~t~al-Ay~-----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~ 589 (929)
T KOG2062|consen 525 KELLRDKDPILRYGGMYTLAL-AYV-----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------Q 589 (929)
T ss_pred HHHhcCCchhhhhhhHHHHHH-HHh-----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------h
Confidence 345555566666655544331 110 11223667777777 556789999999999988766 444 3
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh-hCCHhhHHHH
Q 004806 611 VKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC-TNSSRFCSMV 687 (729)
Q Consensus 611 V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~-~~~~~~~~~v 687 (729)
++..+.+|. -+..++-.+.-+|+.-|.....++++ ..|--++.....-++.-|+-++.-+. ..++..+..+
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv 663 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV 663 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH
Confidence 455666773 45677777788888877766555544 22333333445556666666665543 3333222222
Q ss_pred HhCCCHHHHHHhhhCCCH
Q 004806 688 LQEGAVPPLVALSQSGTP 705 (729)
Q Consensus 688 l~~G~v~~Lv~Ll~sg~~ 705 (729)
.+....+.+++.+.+.
T Consensus 664 --~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 664 --NGFRKQLEKVINDKHE 679 (929)
T ss_pred --HHHHHHHHHHhhhhhh
Confidence 1234445555555443
No 282
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=0.43 Score=40.06 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCcccccCccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 186 (729)
|-+=+||-|.-.=.| |.++ -|-|.|-+-||.+|+... ...||.|||...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444455555433222 4444 589999999999999753 345999999764
No 283
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.46 E-value=43 Score=40.54 Aligned_cols=190 Identities=16% Similarity=0.157 Sum_probs=111.6
Q ss_pred HHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHH--HHHHHhcCCC-HH
Q 004806 467 ELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIE--PLIHVLQTGS-PE 542 (729)
Q Consensus 467 ~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~--~Lv~lL~s~~-~e 542 (729)
.|...+..++++...+.+.|++..+...++. ....++..++..|.|++...+.+........+. .+-.++...+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999986 467789999999999987654444433332222 3333444444 47
Q ss_pred HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHH-HHHhc--C
Q 004806 543 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH-LVDLM--D 619 (729)
Q Consensus 543 ~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~-Lv~LL--~ 619 (729)
.-++|+.+|..+..+.+. ....+.-+..-.++ ..++.. ......++.....+.. +..++ .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l-----------~e~i~~---~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELL-----------VEAISR---WLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHH-----------HHHhhc---cCccceeehhhhhcchhHHHHhccc
Confidence 778888888887664333 11112111111111 111111 1112222222222222 44444 2
Q ss_pred CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 004806 620 PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAAL 673 (729)
Q Consensus 620 ~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL 673 (729)
...+..-.|++++.++.. .++....+...++++.+.++-.. ....+++.+...+
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 345566778888888887 55556666777777777665432 2344444444444
No 284
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.35 E-value=0.79 Score=49.75 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.6
Q ss_pred cccccCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
.+.|.|++++|.| |++.|.|++|-...|+.|=..++-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3679999999986 9999999999999999998776677999988776543
No 285
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=94 Score=38.84 Aligned_cols=225 Identities=14% Similarity=0.122 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+..+..|+..+++.+..++..|++-+..++...+ ..+++ .+|...+.++.- ++...-..|+.+|..|+..---.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 46788899999999999999999999999999876 22222 344555554432 23445568888888886421000
Q ss_pred HHHHhcCCHHHHHHHhcCC--------CHHHHHHHHHHHHHhccCcchh--hhhhccCcHHHH-HHhhcCCCHHHHHHHH
Q 004806 521 SAIANANAIEPLIHVLQTG--------SPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPL-VDLLGNGTPRGKKDAA 589 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~--------~~e~r~~Aa~aL~nLS~~~e~k--~~I~~~g~I~~L-v~LL~~~~~~v~~~Al 589 (729)
-.. -..+++.+++-|.-. ...+|..|+.++|.++...+.. ..+. ......| ...+-+....++++|.
T Consensus 415 ps~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHH
Confidence 000 013455555555422 2458999999999987643322 1111 1122222 2233355667788888
Q ss_pred HHHHhcccCc---------------------HHHH-----HHHH-cCcHHHHHHhc------CCCHHHHHHHHHHHHHHh
Q 004806 590 TALFNLSIYH---------------------ENKA-----RIVQ-AGAVKHLVDLM------DPAAGMVDKAVAVLANLA 636 (729)
Q Consensus 590 ~aL~nLs~~~---------------------en~~-----~lv~-~G~V~~Lv~LL------~~~~~v~e~Al~~L~nLa 636 (729)
.||....... .|+. .+.+ .|....+++-+ .-+..+++.+..+|..|+
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 8776543211 1111 1111 34444555433 245678899999999987
Q ss_pred CCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 637 TIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 637 ~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
... ........++.|+....+.+...++-+..+...
T Consensus 573 ~~~---pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 573 LTE---PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred Hhh---HHhhcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 532 233344567777777777666655544444433
No 286
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.31 E-value=5.3 Score=38.86 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH-HHhcCCHHHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA-IANANAIEPLIH 534 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~-I~~~g~I~~Lv~ 534 (729)
..+++..++.++..+- +..+....+ -+-+.+-.++...+.+-...++.+|..|-.. ++.-.. +...|.++.++.
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~ 93 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLP 93 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHH
T ss_pred CHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHH
Confidence 4456777777776663 223332221 1122233333333233445666666665332 333333 345688888999
Q ss_pred Hhc--CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-CCHH-HHHHHHHHHHhc
Q 004806 535 VLQ--TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPR-GKKDAATALFNL 595 (729)
Q Consensus 535 lL~--s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-~~~~-v~~~Al~aL~nL 595 (729)
++. ..+...+..++.+|..-+.+...|..|. ..+++.|-++++. .+.. ++..|+..|..|
T Consensus 94 ~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 94 LASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 998 6677788888888777666666666665 4568999999964 4555 788887777643
No 287
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.09 E-value=6.2 Score=40.96 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhccc------CcHHHHHHHHcCcHHHHHHhc----CC--------CHHHHHHHHHHHHHHhCCcchHHH
Q 004806 583 RGKKDAATALFNLSI------YHENKARIVQAGAVKHLVDLM----DP--------AAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~------~~en~~~lv~~G~V~~Lv~LL----~~--------~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
.++++|+.+|.|++. +++....-+-.|++.-.+-=- ++ .-.-+..|+.+|..|+..+.+...
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDl 160 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDL 160 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcce
Confidence 456777777777764 333333223333333332211 11 123478899999999998888888
Q ss_pred HHhCCc-------HHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCHhhHHHH-HhCCCHHHHHHhhhCCCHHHHHH
Q 004806 645 IGQENG-------IPVLVEVV-ELGSARGKENAAAALLQLCTNSSRFCSMV-LQEGAVPPLVALSQSGTPRAKEK 710 (729)
Q Consensus 645 i~~~g~-------I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~~~~~~v-l~~G~v~~Lv~Ll~sg~~rvr~~ 710 (729)
++..+- +..|+++| ..+++-.+|-|+.+|.+||..+...+..+ .+.+.|..|+..+......+...
T Consensus 161 iLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 161 ILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAHQV 235 (257)
T ss_pred eeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 877663 34445555 34788999999999999999998766544 56789999999998775444433
No 288
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.74 E-value=6.3 Score=34.84 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
......+..|.++.+.+|..++..|+.|..... ...+-..+.+..+...|+++|+-+--+|+.+|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 456778888999989999999999999988654 1222234677888889999999999999999998864
No 289
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.59 E-value=9.4 Score=46.32 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
...++.|++.+.+.....+..=+..|.+.-.+-|. ...+-+ ....|.|++.|.-.|..++..++.+|--+......-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 45789999999855555555556666666664433 333333 2678888899999999998888888755532111100
Q ss_pred HHHhcCCHHHHHHHhcCCC---HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 522 AIANANAIEPLIHVLQTGS---PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~---~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
.-.-.-.+|.++.+=++.+ ..+|+.|..+|..|.. .+...-.-....++..|.+.|.+...-+++.|+.+=.
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 0011234566665555444 6799999999999988 4555555556688999999999988888888887643
No 290
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.70 E-value=15 Score=34.59 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh-hHHHHHhcCcHHHHHHHHcC---CCHHHHHHHHHHHHHhhc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHS---SETKIQENAVTALLNLSI 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~-nr~~I~~~GaI~~Lv~LL~s---~d~~v~e~Al~aL~nLs~ 515 (729)
+..++.|-+.|+++++.+|..|+..|-.+.+.... ....++...++..|+.++.. .++.++..++..|.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999997654 56677777888889999975 478899999999988753
No 291
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.58 E-value=49 Score=39.67 Aligned_cols=209 Identities=14% Similarity=0.113 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+..++.+...|.+....++++|.-++..+-+..+ ..+ .++-..+-.+|. ..|+.++.+|...|... +++.
T Consensus 133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~--D~Er-- 203 (948)
T KOG1058|consen 133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTT--DPER-- 203 (948)
T ss_pred hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhccCchhHHHHHHHHHhc--CHHH--
Confidence 4567888888888899999998888877766311 111 244555555554 35788888887766443 2111
Q ss_pred HHHhcCCHHHHHH---HhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 522 AIANANAIEPLIH---VLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 522 ~I~~~g~I~~Lv~---lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
++..|.. -..+-++.++...+..+...+..... .+...|..+..+|.+.++.++-.|+.+|.+|+..
T Consensus 204 ------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 204 ------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred ------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 1111111 11122233444444444433321111 1134577788888888888888888888888776
Q ss_pred cHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
+..-.... ..+++++ .++..+.--.+.-|..|. ..-+.+. .|.+--++.+|.+.+-.++..+..+..-|
T Consensus 274 p~alk~Aa-----~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldL 344 (948)
T KOG1058|consen 274 PTALKAAA-----STYIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDL 344 (948)
T ss_pred HHHHHHHH-----HHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhh
Confidence 65433222 2344444 122222222222222222 1111111 12344455566666667777777666666
Q ss_pred hhC
Q 004806 677 CTN 679 (729)
Q Consensus 677 ~~~ 679 (729)
...
T Consensus 345 vss 347 (948)
T KOG1058|consen 345 VSS 347 (948)
T ss_pred hhh
Confidence 544
No 292
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.32 E-value=14 Score=35.45 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|+++++.+|..|+..|-.+.++. ......++..+++..|+.++. ..++.|+..++..|.+.+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999863 446677788899999999997 457889999999988775
No 293
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=77.25 E-value=1.7 Score=54.04 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCcccccCcccccc-CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 004806 137 IPSDFCCPLSLELMT-DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 182 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~-dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 182 (729)
+-..+.|+||+++|+ -=-+.-|||.||-.|+..|+... ..||.|.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchh
Confidence 345569999999999 66678899999999999999975 5699997
No 294
>PF04641 Rtf2: Rtf2 RING-finger
Probab=76.95 E-value=2.7 Score=44.47 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=32.5
Q ss_pred CcccccCccccccCceec-CCCccccHHHHHHHHhcCC
Q 004806 139 SDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGL 175 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~ 175 (729)
..++|+|+++.+++||+. .-|+-|.+..|..||....
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~ 70 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKK 70 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcC
Confidence 467899999999999976 4799999999999998653
No 295
>PRK14707 hypothetical protein; Provisional
Probab=76.26 E-value=1.9e+02 Score=39.13 Aligned_cols=258 Identities=17% Similarity=0.141 Sum_probs=135.7
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 446 VRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 446 V~~Lv~~L~--s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
|..|+..++ .++.+.+..+......++.+. ..+..+ ...+|..+++-+.. ++..--.+|+..|.....++.....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 556666665 456666666666666776643 444444 44556666666654 3333344555555554334433333
Q ss_pred HHhcCCHHHHHHHhcC-CCHHHHHHHHHHHH-HhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH-hcccCc
Q 004806 523 IANANAIEPLIHVLQT-GSPEARENAAATLF-SLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYH 599 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~-nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~-nLs~~~ 599 (729)
-+...+|...+..|.. .+...-.+++.+|. .|+.....+..+-..++-..|-.|-+-.+..+...|+..|. .|...+
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 3344455555555544 33334444444443 34444444444443343334444444556666665555554 454444
Q ss_pred HHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHH-HHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 004806 600 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLA-NLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ 675 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~-nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~n 675 (729)
+-+. -++.-.+..+++-|+ ++..++..|...|+ -|+..++-+..+- ..++..++.-|.. .+..+...|+..|..
T Consensus 323 ~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 323 ELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAE 400 (2710)
T ss_pred hhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 4442 333444555555553 45555555554444 5666666666553 3345666666644 566777778888866
Q ss_pred HhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHH
Q 004806 676 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRA 707 (729)
Q Consensus 676 L~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rv 707 (729)
=..++.+.+..+-..|+-..|-.+.+=....+
T Consensus 401 ~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~ 432 (2710)
T PRK14707 401 HVVDDLELRKGLDPQGVSNALNALAKWPDLPI 432 (2710)
T ss_pred HhccChhhhhhcchhhHHHHHHHhhcCCcchh
Confidence 55566666666655555555544544443333
No 296
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.26 E-value=1.1 Score=52.68 Aligned_cols=64 Identities=16% Similarity=0.329 Sum_probs=49.0
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
++.||||.....+|+.+.|-|.||+.|+-.-|.. +...||+|+.......+.--..-.+++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 4669999999999999999999999999886543 345699998766655554445556666654
No 297
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.18 E-value=13 Score=31.45 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCC
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEG 691 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G 691 (729)
+..|+++++++++.+.|...+-+.+.++.++++... +...++--|..+|.-++... +.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 457899999999999999999888999999999975 56777777888877776654 3455554443
No 298
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.96 E-value=9.4 Score=37.09 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=82.0
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhhhh
Q 004806 488 INILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKI 564 (729)
Q Consensus 488 I~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I 564 (729)
+..++..|.. ..++++-.|.-++..+- +..+... ..-.-+.+-.++..+..+....+..+|..|-- .++....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445554443 45667777777776662 2222221 11112223334444444466677777776644 34444444
Q ss_pred -hccCcHHHHHHhhc--CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC--CCHH-HHHHHHHHHH
Q 004806 565 -GRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD--PAAG-MVDKAVAVLA 633 (729)
Q Consensus 565 -~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~-v~e~Al~~L~ 633 (729)
...|.++.++.++. ..+......++.+|..=|.+...|..+ ...+++.|-++++ .+.. ++..|+-+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 45699999999998 667888888888887766655555544 4456788888883 3333 5555555554
No 299
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=1.7 Score=47.04 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=37.3
Q ss_pred cccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
--.|=||+.=-+|=|++||-|. .|..|-+.---. ...||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 4679999999999999999986 799986654322 2359999998754
No 300
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=75.94 E-value=5.8 Score=44.75 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=91.3
Q ss_pred chhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc----ChhhHHHHHhc--CcHHHHHHHHc---CCCHHHHHHHHH
Q 004806 438 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH----NMDNRMVIANC--GAINILVDMLH---SSETKIQENAVT 508 (729)
Q Consensus 438 ~l~~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~----s~~nr~~I~~~--GaI~~Lv~LL~---s~d~~v~e~Al~ 508 (729)
+++-.......++.-|.+..-..|.++++.+.+++.. .+..+..-... -.+..++.+-. .+..++..+|+.
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 3333344444555555555567788888888877542 22212211111 12222222221 235678999999
Q ss_pred HHHHhhcC-----CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh--ccCcHHHHHHhhcCC-
Q 004806 509 ALLNLSIN-----DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNG- 580 (729)
Q Consensus 509 aL~nLs~~-----~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~--~~g~I~~Lv~LL~~~- 580 (729)
+|.|+..- +-.-..+.+...+..+-..+-.+...++-||+.+|.||-.++..+-.-. ..-+++.|..|+.+.
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 99999631 1111112222222222234445668899999999999987765532221 125788888888764
Q ss_pred CHHHHHHHHHHHHhccc
Q 004806 581 TPRGKKDAATALFNLSI 597 (729)
Q Consensus 581 ~~~v~~~Al~aL~nLs~ 597 (729)
+-+++..|+.+|.--..
T Consensus 587 NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 587 NFKVRIRAAAALSVPGK 603 (728)
T ss_pred cceEeehhhhhhcCCCC
Confidence 77888888888876544
No 301
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.24 E-value=18 Score=45.14 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=97.3
Q ss_pred cHHHHHHhhcC----CCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcch
Q 004806 569 AIGPLVDLLGN----GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 569 ~I~~Lv~LL~~----~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
..|.++.+++. .++.++.+|..||+.++. ..+.+. .-.+.|+..| .+++.++.+++..++-|+..-..
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34555666643 378888888889988754 322222 2456777777 36677778888888877753221
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 642 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
- -+..-+.|...|+..++.+++.|+.+|.+|..++ .+.--|.++.+..++.+++++++..|....+-|
T Consensus 995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 1 1223577888889999999999999999998774 344468999999999999999999999444433
No 302
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.20 E-value=3.2 Score=45.77 Aligned_cols=60 Identities=20% Similarity=0.451 Sum_probs=39.0
Q ss_pred CcccccCccccccCc---eecCCCccccHHHHHHHHhc----CCC---CCCCCCccCCCCCCcccHHHHHHHHH
Q 004806 139 SDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDL----GLF---VCPKTRQTLAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~----~~~---~cP~t~~~l~~~~l~pN~~l~~~I~~ 202 (729)
.-|.|.||.+-..=- +.+||+|.|||+|+..|+.. |.. .||.++- ...-.|+ .|++++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~g-~vKelvg~ 252 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPPG-QVKELVGD 252 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCch-HHHHHHHH
Confidence 347899999766543 35899999999999999863 222 2665543 2222333 66666654
No 303
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=75.05 E-value=6.9 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=21.9
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhc------CCCCCCCCCc
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL------GLFVCPKTRQ 183 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~------~~~~cP~t~~ 183 (729)
+.|.||.|++ .|+...+.+++.. ....||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4688998766 4556666666653 2245999975
No 304
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.02 E-value=1.9e+02 Score=37.67 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=114.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccH
Q 004806 445 QVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSI-NDNNK 520 (729)
Q Consensus 445 ~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k 520 (729)
.|=+.+++-++. ...-+..|+.-+..+++.. +..+... -.||.|.+.-.+++..+|.. ..-+||.-. +....
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKKV 1032 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHH-HHHHHHHhccChHHH
Confidence 334444444322 3333455666666665532 3333221 45777777777788877754 555666533 33322
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHH---HHHHHHhcc
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKD---AATALFNLS 596 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~---Al~aL~nLs 596 (729)
..-.-...+.-|+.-|.+....+|+.++-+|..|-...+.-...-. ...+..+...+.+=...++++ ++.+|..||
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222346677788788788899999999999999765333222211 134444444444434455554 455555554
Q ss_pred c-----CcHHHHHHHHcCcHHHHHH--hcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 597 I-----YHENKARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 597 ~-----~~en~~~lv~~G~V~~Lv~--LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
. .+..+.+-+-.-++|.|++ +++.-.+++..++.++..|+.+..+.-.-.-...|+.|+.....
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 3 1122222222334444444 23344677888999999999865542111122346666665543
No 305
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=74.22 E-value=1.9e+02 Score=34.06 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCC-HHHHH---HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKSTS-LDTQR---EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~-~evq~---~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
+...-+|++.+..+. ..-|. .-.+.+..+.+.++..+..+ .|.|-.-|++...-+.-+++++++.++...-
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 345667888877543 11122 23445555656555444443 4556666666667788888998888764321
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
.-..+ ...+..|--+|++.....|-.|.++|..|+.....+..... +.+-.|+.+.+..+-..|...|..
T Consensus 297 ~~~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 297 GSQFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred CHHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----hhHHHHhhcccccchHHHHHHHHH
Confidence 11111 12455666677788888999999999999875444333322 223334444444444455544443
No 306
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.71 E-value=19 Score=34.56 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSI 515 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~ 515 (729)
.+..++.|.+.|.+.++.+|..|+..|-.+.+... .....++..+++..|+.++.. .+..|+..++..|...+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998654 355677778999999999987 788999999999887753
No 307
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.09 E-value=37 Score=40.27 Aligned_cols=222 Identities=13% Similarity=0.140 Sum_probs=125.5
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccch
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDN 560 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~ 560 (729)
++..-..+.|+..+.-.+ .....+..|..+...-+... ...+.++.|+++++..+..+|.. .|.++-. .+..
T Consensus 289 i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~L 361 (690)
T KOG1243|consen 289 IIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHL 361 (690)
T ss_pred HHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhc
Confidence 444455666666665544 11233333433332111111 55678999999999998877743 3444332 2333
Q ss_pred hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc
Q 004806 561 KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 561 k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~ 639 (729)
...+++...+|.+..-+.+.++.++..++.++.-|+.-=.-+ .+....+..|..+- +...+++.+..-+|..++.+-
T Consensus 362 t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 362 TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 456677788999999999999999999999888775411111 12222333333332 344556666666666666532
Q ss_pred chHHHHHhCCc-HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 640 DGRVAIGQENG-IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 640 e~r~~i~~~g~-I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
. +..+.++ +..+..-++..-...+..++.+++..+..-+. .-+...++|.|+-+.-+...-++..|...++.+
T Consensus 440 ~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 440 A---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred c---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 1 1113332 34444456665566777778887776665431 111223566666666666666666665544433
No 308
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.86 E-value=20 Score=36.85 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhc---CC--CHHHHHHHHHHHHHhccCcch--hhhhhccCcHHHHHH
Q 004806 503 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ---TG--SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVD 575 (729)
Q Consensus 503 ~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~---s~--~~e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~ 575 (729)
..+|+.+|--++.+++.|..+.++-.---|...|. +. ...+|..+++++..|..+++. -..+....++|.++.
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45666666666778888888887754333444443 22 255889999999999886442 445556799999999
Q ss_pred hhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH----cCcHHH----HHHhc-C-CCHHHHHHHHHHHHHHhCCcchHHHH
Q 004806 576 LLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AGAVKH----LVDLM-D-PAAGMVDKAVAVLANLATIPDGRVAI 645 (729)
Q Consensus 576 LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~----~G~V~~----Lv~LL-~-~~~~v~e~Al~~L~nLa~~~e~r~~i 645 (729)
++..++.-.+..|+.++..+-.++.+-+.+.+ --+|.. ++.-+ + ....+...++.+-..|+..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 99999888888888888777666554433322 222322 22222 2 34566777888777888888777766
Q ss_pred H
Q 004806 646 G 646 (729)
Q Consensus 646 ~ 646 (729)
.
T Consensus 277 ~ 277 (315)
T COG5209 277 S 277 (315)
T ss_pred h
Confidence 4
No 309
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.53 E-value=29 Score=37.40 Aligned_cols=144 Identities=17% Similarity=0.240 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
....+...++.|.+.+++....++..|+.|+...++...-.. .-.|..++.-++.....|-..|+.++..+...-++..
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999988875543322211 2466777777777777888889999888854322221
Q ss_pred HHHhcCCHHHHHH-HhcCC---CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 522 AIANANAIEPLIH-VLQTG---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 522 ~I~~~g~I~~Lv~-lL~s~---~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
. + .+..++. +|... +.-+++.|-.+|..+...-.. .-+++.|+..+++.++.++..++.++.+..
T Consensus 165 ~--~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 165 D--Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1 1 3444443 33332 244788888888877543211 135667777788888898888888777653
No 310
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=72.53 E-value=2.8 Score=38.01 Aligned_cols=58 Identities=19% Similarity=0.478 Sum_probs=35.2
Q ss_pred CCCCCCC-cccccCccccccCceecC-CC-----ccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 004806 133 SPVPIPS-DFCCPLSLELMTDPVIVA-SG-----QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 191 (729)
Q Consensus 133 ~~~~~p~-~f~CpI~~~lm~dPV~~~-~G-----~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 191 (729)
..+.-|+ .+.|||++++-+.=|.+. ++ .-||..++.+-...|. .=|.+|.|++....+
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sMIv 96 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSMIV 96 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTEE
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhhEe
Confidence 3444454 579999999999999864 22 3499999999998863 479999999886654
No 311
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.44 E-value=0.96 Score=47.45 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=30.8
Q ss_pred CcccccCccccccCceecCCCccc-cHHHHHHHHhcCC--CCCCCCCccC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTY-ERAFIKKWIDLGL--FVCPKTRQTL 185 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty-~r~~I~~~~~~~~--~~cP~t~~~l 185 (729)
.+.+|.||.+.-+|=|.++|||.. |-.| |. ..||+||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 378899999999999999999963 4444 32 2488888753
No 312
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=71.63 E-value=3.6 Score=38.73 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=38.3
Q ss_pred cccccCccccccC--cee-cCCCcc------ccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 140 DFCCPLSLELMTD--PVI-VASGQT------YERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 140 ~f~CpI~~~lm~d--PV~-~~~G~t------y~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
..-|.||++-..+ =|+ ++||-+ ||..|+++|-+. ...+|.-|..--.-++.|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccceEEEEeCCC
Confidence 5679999987777 665 577754 999999999644 466999987654444444
No 313
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=71.30 E-value=22 Score=42.10 Aligned_cols=165 Identities=19% Similarity=0.156 Sum_probs=88.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcC----CCHHHHHHHHHHHHhccc----
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGN----GTPRGKKDAATALFNLSI---- 597 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~----~~~~v~~~Al~aL~nLs~---- 597 (729)
.++..+.+++.++..... .|+.+|..|.... ..- ...+..+..|++. .++.++..|+.++..|..
T Consensus 395 ~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 356667777777543222 3455555554321 111 2345666666664 346677777777777643
Q ss_pred Cc------HHHHHHHHcCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC---CH
Q 004806 598 YH------ENKARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG---SA 663 (729)
Q Consensus 598 ~~------en~~~lv~~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~---s~ 663 (729)
.. ......+....++.|...|. .+..-+..++.+|+|+.. ...++.|..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 11122333456666666652 344556677888888753 23567777777654 67
Q ss_pred HHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC--HHHHHHHHHHH
Q 004806 664 RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALL 715 (729)
Q Consensus 664 ~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~--~rvr~~A~~lL 715 (729)
.++-.|+++|..+....++. +.+.|+.++.+.+ .++|-.|..+|
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 78888888888776665531 2455666665543 56666665443
No 314
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.59 E-value=1.3e+02 Score=36.54 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=48.6
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI 557 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~ 557 (729)
-..+.|=+.|.+....+..+|+.++.+|..- +-+.+. .++..|--+|.++...+|-.|.++|..++..
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 3455566667778888899999998888431 111111 2666777788888899999999999998763
No 315
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.48 E-value=68 Score=39.43 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=101.1
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHH
Q 004806 537 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 615 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv 615 (729)
.+....-+..|+..+.-..............|.+..++.. +.+.+..+...|+.+|..|+..-..-..=...++.+.|+
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~ll 342 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLL 342 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHH
Confidence 3445555555555555443322201111112444555544 345577888888888888766222112223345666777
Q ss_pred Hhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCH
Q 004806 616 DLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAV 693 (729)
Q Consensus 616 ~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v 693 (729)
+-+ +....+++.++.++-.++.. .......+.+...+..+++..+..+...+.......+ .....-.-.+.+
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~ 416 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLV 416 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHh
Confidence 766 34556677666666655541 1112346778888899999999887666655544433 222222223567
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 694 PPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 694 ~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
+.++....+.+..||..|.+++..+
T Consensus 417 p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 417 PHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHhhhccCCcHHHHHHHHHHHHHH
Confidence 8888888888889999888865443
No 316
>PLN02189 cellulose synthase
Probab=70.34 E-value=2.8 Score=51.66 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred ccccCccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-.|+||++ .+-+|-+. .||.-.||.|.+-=.++|+..||+|+.++.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999996 45567665 389999999996666778888999999886
No 317
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.24 E-value=28 Score=32.76 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs 514 (729)
.+..++.|-+.|+++++.+|..|+..|-.+.++. ......+...+++..|+.++... .+.|+..++..+...+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999873 45667777889999999999764 3448888888887764
No 318
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.15 E-value=21 Score=33.55 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=60.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhCC---CHHHHHHHHHHHHHhhcCcC
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg---~~rvr~~A~~lL~~L~~~~~ 723 (729)
++..|.+.|.++++.++..|+.+|-.+..+.+. ....+.....+..|+.++... .+.+++++.+++......-.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 477888889999999999999999999988765 667777767777899998763 47899999999987766543
No 319
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=69.00 E-value=1.9e+02 Score=32.04 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=60.0
Q ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcC-CCHHHHHHH-HHHHHHhccCcchhhh
Q 004806 487 AINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-GSPEARENA-AATLFSLSVIEDNKIK 563 (729)
Q Consensus 487 aI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s-~~~e~r~~A-a~aL~nLS~~~e~k~~ 563 (729)
-|..++.=|.+ ....++..++--|+.-+.++.-+..+...|.+..+++.+.. ++...-..+ +.+++-|+.+...-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 35555555553 35567888888888888889999999999999999999844 444244444 4444444444434444
Q ss_pred hhccCcHHHHHHhhc
Q 004806 564 IGRSGAIGPLVDLLG 578 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~ 578 (729)
+.+.+.+..++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 444456666677776
No 320
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=68.65 E-value=8.5 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=29.4
Q ss_pred CCCCCCCcccccCccccccCcee--cCCCccccHHHHH
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVI--VASGQTYERAFIK 168 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~--~~~G~ty~r~~I~ 168 (729)
..+.+.++=.|++|+.-+.+++. -||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45567788889999998888775 4999999988875
No 321
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.54 E-value=76 Score=37.94 Aligned_cols=101 Identities=20% Similarity=0.107 Sum_probs=68.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.|.+..|++-..+.+..+|...+.+|.-|+-.......-+..+....|..-+.+..+.++..|+.||..+=..+.+
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----
Confidence 3556666777777888999999998888865222222233346677777778888899999999999988532211
Q ss_pred HHcCcHHHHHHhc--CCCHHHHHHHHH
Q 004806 606 VQAGAVKHLVDLM--DPAAGMVDKAVA 630 (729)
Q Consensus 606 v~~G~V~~Lv~LL--~~~~~v~e~Al~ 630 (729)
-+..++..++.++ +++.+++..|+.
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 0123556677777 577777776544
No 322
>PLN02195 cellulose synthase A
Probab=67.91 E-value=4.3 Score=49.77 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=38.0
Q ss_pred cccCccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 142 CCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 142 ~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.|.||++ .+-+|-+. .||.-.||.|.+==-++|+..||+|+.++..+
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccc
Confidence 4999997 56678776 49999999999555667778899999999843
No 323
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=67.83 E-value=1.6e+02 Score=33.61 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=82.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHH-HHhcccCcHHHHHHH
Q 004806 529 IEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA-LFNLSIYHENKARIV 606 (729)
Q Consensus 529 I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~a-L~nLs~~~en~~~lv 606 (729)
+..++++|.. .+...+..|+++|..++.....+-.=...-+|..+++.-++....+...|..+ +.-++....-.
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 4556777876 56778888999998887654333221222456666666666666665555553 33444432211
Q ss_pred HcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHH--hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 607 QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 607 ~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.|..+..++ ..+....-.++..+..|+..-. .+.+. -....|.+++--.+.+..++..|+.+|..+...
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLFERLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 222333333 2233333334444444443211 22332 245788999999999999999999999876543
No 324
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.77 E-value=14 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=42.1
Q ss_pred CCcccccCccccccCceec----CCCccccHHHHHHHHhc--CCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTDPVIV----ASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~----~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~ 188 (729)
|.-+.|-||.+.-.|+-.+ .||...|-.|--.-|+. -+..||+|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3568899999999999886 48999999999887764 346799999887653
No 325
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.55 E-value=22 Score=34.07 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=60.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-HhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcCc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~-~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~~ 722 (729)
++..|.+.|.++++.++..|+.+|-.+..+. ......+...+.+..|+.++... .++|++++..++......-
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 5778888999999999999999998888885 44677788888999999999864 4789999999988776543
No 326
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=67.13 E-value=1.4e+02 Score=32.38 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-Cc-HHHHHHHHcC-C-CHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GA-INILVDMLHS-S-ETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-Ga-I~~Lv~LL~s-~-d~~v~e~Al~aL~nLs~~~~ 518 (729)
.++...|++.+...+-+.+..++....++-+.....|...++. .. ...+..++.. . .+++...+-..|.....++.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHH
Confidence 3567788888887777778777777777766554555444432 11 2222233332 2 24444444444544455566
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhcc---CcHHH-HHHhhcCCCHHHHHHHHHHHH
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRS---GAIGP-LVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~---g~I~~-Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
-...|.....+.........+.-++...|..+...+-... .....+... ..++. --.|+++++--.++.+..+|+
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 6667777777888888887777777777777777665422 222222222 23344 567888999999999999999
Q ss_pred hcccCcHHHHHHHH----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc
Q 004806 594 NLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 640 (729)
Q Consensus 594 nLs~~~en~~~lv~----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e 640 (729)
.+-....|...+.. ...+..++.+| ++...+.-.|..+.+....++.
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99887777666554 46788888888 5667788889988888777543
No 327
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=67.12 E-value=35 Score=32.53 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 514 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s------~d~~v~e~Al~aL~nLs 514 (729)
+..++.|.+.|++.++.+|..|+..|-.+.+.. ......++..+++.-|+.++.. .+..|+...+..|...+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998853 4466778888999999999953 46889999888887664
No 328
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=66.78 E-value=1.7e+02 Score=34.58 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh----c---CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN----C---GAINILVDMLHSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~----~---GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
.+-.|++.|+.-+.+........+..-. .....|..+.+ + .++..+..++...... ...|..+|..|....
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~ 425 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHV 425 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhc
Confidence 3566666666554433333222222211 11233443332 3 3567777777664322 233555555554321
Q ss_pred -ccHHHHHhcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhcc---Cc-------chhhhhhccCcHHHHHHhhc----
Q 004806 518 -NNKSAIANANAIEPLIHVLQT----GSPEARENAAATLFSLSV---IE-------DNKIKIGRSGAIGPLVDLLG---- 578 (729)
Q Consensus 518 -~~k~~I~~~g~I~~Lv~lL~s----~~~e~r~~Aa~aL~nLS~---~~-------e~k~~I~~~g~I~~Lv~LL~---- 578 (729)
..- ...+..+..+++. ..+.++..|+-++..|.. .. ..+........++.|...|.
T Consensus 426 ~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 500 (618)
T PF01347_consen 426 RRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS 500 (618)
T ss_dssp ---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHH
T ss_pred CCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 111 1235555566653 345677777767666643 11 11122222355666666665
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-C---CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-P---AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~---~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
.++..-+..++.||.|+-. ...++.|..++. . ...++..|+.+|..++.... ..+.+.|
T Consensus 501 ~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-------~~v~~~l 563 (618)
T PF01347_consen 501 RGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-------EKVREIL 563 (618)
T ss_dssp TT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-------HHHHHHH
T ss_pred ccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-------HHHHHHH
Confidence 4566778889999999732 236777877773 2 35667778888887754221 1234566
Q ss_pred HHHHcc--CCHHHHHHHHHHH
Q 004806 655 VEVVEL--GSARGKENAAAAL 673 (729)
Q Consensus 655 v~lL~s--~s~~~ke~A~~aL 673 (729)
+.++.. .+.+++-.|..+|
T Consensus 564 ~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 564 LPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHhcCCCCChhHHHHHHHHH
Confidence 777754 3455555554444
No 329
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.58 E-value=21 Score=34.29 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=61.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhC-CCHHHHHHHHHHHHHhhcC
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~s-g~~rvr~~A~~lL~~L~~~ 721 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+..|..++.. ....|++++..++......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 47788888999999999999999999998876 466778888899999999988 5689999999988876654
No 330
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.44 E-value=1.7e+02 Score=30.36 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=80.1
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 488 INILVD-MLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 488 I~~Lv~-LL~s~d~~v~e~Al~aL~nLs~~~-~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
++.|+. +-+..+++++...+.+|..++.+. .+... ++..|..+...+..+.+.-+.+.+..+-.. +.+..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHH--
Confidence 344444 445578999999999999998776 33333 355566666777766655555555554321 11111
Q ss_pred ccCcHHHHHHh--h------cCC--CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-C-CCHHHHHHHHHHHH
Q 004806 566 RSGAIGPLVDL--L------GNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D-PAAGMVDKAVAVLA 633 (729)
Q Consensus 566 ~~g~I~~Lv~L--L------~~~--~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~-~~~~v~e~Al~~L~ 633 (729)
+.+..++.. + ..+ ..+.....+.++..+|...++ .....++.+..+| + .+..++..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 334443333 1 111 234444555677777775554 2334667777777 4 44556678888999
Q ss_pred HHh
Q 004806 634 NLA 636 (729)
Q Consensus 634 nLa 636 (729)
.||
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 998
No 331
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=2.8e+02 Score=34.95 Aligned_cols=139 Identities=15% Similarity=0.046 Sum_probs=72.5
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----C-cc----HHHHH
Q 004806 454 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----D-NN----KSAIA 524 (729)
Q Consensus 454 ~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~----~-~~----k~~I~ 524 (729)
.+-+..++..++.+|..|+...+++ ...+..+.|+....+.+..++.-...+...+... . -. ...|.
T Consensus 554 ~HWd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 554 CHWDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA 629 (1133)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence 3457888999999999998865433 3346778888877777877766554444433211 1 00 01111
Q ss_pred hc-CCHHHHHH-HhcCCC-HHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 525 NA-NAIEPLIH-VLQTGS-PEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 525 ~~-g~I~~Lv~-lL~s~~-~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
.. ..++++.. .+..|- .-++...+..+..++.... ....++..+.-..+.+.+...+ .++..|.+++..++.
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 10 12333322 222332 3344455566666654322 2222222333333444444444 677777888877764
No 332
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.89 E-value=80 Score=30.85 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhc---
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSS-ETKIQENAVTALLNLSI--- 515 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~--GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~--- 515 (729)
....+..+..+|++.+.+.+..++..+...+..++ ...+.+. -.+..|+.+|+.. .+.+.+.++.+|..|..
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35667778888999888888888888888887542 3444343 4678889999875 45677888888877743
Q ss_pred -CCccHHHHHhc---CCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004806 516 -NDNNKSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSL 554 (729)
Q Consensus 516 -~~~~k~~I~~~---g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL 554 (729)
.++..+.+.-. +.+..++.+++. ......++.+|..+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 23333333322 455666666654 23334444444443
No 333
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.84 E-value=34 Score=40.71 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=89.8
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhcccCcHHHHH
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKAR 604 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~en~~~ 604 (729)
..+++.|..-++..+..+++.++..+-.++..-+ ...+..-++|.|-.+ +++.+..++.+++.|+..+. +.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 3467777778888888899999998888876433 233344556777666 44567889999999999886 33
Q ss_pred HHHcCcHHHHHHhc----CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC
Q 004806 605 IVQAGAVKHLVDLM----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 662 (729)
Q Consensus 605 lv~~G~V~~Lv~LL----~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 662 (729)
+-...+++.+..++ ..+..++-..+.+..++.....+...+..+.++|.++-+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 34455566666655 25677777788888888774444366666778888888876655
No 334
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.23 E-value=3.6e+02 Score=33.74 Aligned_cols=233 Identities=14% Similarity=0.095 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhc------CC--CHHHHHHHHHHHHHhhcc---ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 004806 443 ETQVRKLVEDLK------ST--SLDTQREATAELRLLAKH---NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 511 (729)
Q Consensus 443 ~~~V~~Lv~~L~------s~--~~evq~~Al~~L~~La~~---s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~ 511 (729)
...++.+++.|. .. ++-....|+..+..|+.. ....+. ..+.=.+..++..++++-.-++..|++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 345666666665 22 222233466666666531 111112 122334566677788888889999999999
Q ss_pred Hhh-cCCccHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcc-hhhhhhc--cCcHHHHHHhhcCCCHHHHH
Q 004806 512 NLS-INDNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIED-NKIKIGR--SGAIGPLVDLLGNGTPRGKK 586 (729)
Q Consensus 512 nLs-~~~~~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~--~g~I~~Lv~LL~~~~~~v~~ 586 (729)
..+ .+=.+...+ ..++......|. +.+..++..|+-+|..+-.+.. ....+.. .+.+..|+.+.+.-..+...
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 887 331122111 234566666666 6667899999999998766443 3343433 26667777777665433333
Q ss_pred HHHHHHHhcccCc-HHHHHHHH--cCcHHHHHHhcC----CCH---HHHHHHHHHHHHHhC---CcchHHHHHh---CCc
Q 004806 587 DAATALFNLSIYH-ENKARIVQ--AGAVKHLVDLMD----PAA---GMVDKAVAVLANLAT---IPDGRVAIGQ---ENG 650 (729)
Q Consensus 587 ~Al~aL~nLs~~~-en~~~lv~--~G~V~~Lv~LL~----~~~---~v~e~Al~~L~nLa~---~~e~r~~i~~---~g~ 650 (729)
..+..+.. .+. +.....++ ..+.....+++. .+. .-.-.|.++|..+.+ .-+....+.. ...
T Consensus 566 ~vme~iV~--~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~ 643 (1010)
T KOG1991|consen 566 NVMEKIVC--KFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIV 643 (1010)
T ss_pred HHHHHHHH--HHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33332211 111 11111111 223334444442 111 112234444444433 2333333332 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 651 IPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 651 I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
++.+-.+|.+.-...-+.+..++..+....
T Consensus 644 l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 644 LPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 566666666666677777777777766654
No 335
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=64.63 E-value=2.2e+02 Score=31.11 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CC-c
Q 004806 441 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-ND-N 518 (729)
Q Consensus 441 ~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~-~ 518 (729)
.....+..++..+.+.. ..+..+....+.+-. +. +..|.+.|.+....+...++..|..+.. +. .
T Consensus 24 ~~~~~L~~~l~~ls~~~-~~~~~g~~l~~~iL~----------~~--~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~ 90 (330)
T PF11707_consen 24 LVSSVLALLLKKLSSDL-SFQSYGLELIRSILQ----------NH--LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGA 90 (330)
T ss_pred HHHHHHHHHHHHhccch-hHHHHHHHHHHHHHH----------HH--HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHH
Confidence 34455555655554433 344444444444333 11 6777888888888888899999988876 43 2
Q ss_pred cHHHHHhc-C-CHHHHHHHhcCC----C---------HHHHHHHHHHHHHhcc--Ccchhhhhhc-cCcHHHHHHhhcCC
Q 004806 519 NKSAIANA-N-AIEPLIHVLQTG----S---------PEARENAAATLFSLSV--IEDNKIKIGR-SGAIGPLVDLLGNG 580 (729)
Q Consensus 519 ~k~~I~~~-g-~I~~Lv~lL~s~----~---------~e~r~~Aa~aL~nLS~--~~e~k~~I~~-~g~I~~Lv~LL~~~ 580 (729)
....+... + -.+.+.+++... . +.+|.+.+..+..+.. +...+..+.. .+.+..+.+-|...
T Consensus 91 ~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D 170 (330)
T PF11707_consen 91 LAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD 170 (330)
T ss_pred HHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC
Confidence 33334432 3 344556665321 1 1778788777666654 3445666554 47888999999998
Q ss_pred CHHHHHHHHHHHHh-cccC----cHHHHHHHHcCcHHHHHHhcC-CCH----HHHHHHHHHHHHHhCCcc
Q 004806 581 TPRGKKDAATALFN-LSIY----HENKARIVQAGAVKHLVDLMD-PAA----GMVDKAVAVLANLATIPD 640 (729)
Q Consensus 581 ~~~v~~~Al~aL~n-Ls~~----~en~~~lv~~G~V~~Lv~LL~-~~~----~v~e~Al~~L~nLa~~~e 640 (729)
+..+....+.+|.. +..+ ...|..+....++..|+.+.. .+. .+.+.+-..|..+|+.+.
T Consensus 171 ~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 171 PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 88999888888884 4332 345667777888899999773 333 778889999999997554
No 336
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.47 E-value=19 Score=43.85 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=94.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~ 563 (729)
+.+|.|++.....+...+-+=+.+|.++-.+-. +..+.. ...+|.|++-|.-.+..+|..+..+|.-+..-...-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 678888888876555556666677766644322 233322 25678888899888988988888877655331111110
Q ss_pred hhccCcHHHHHHhhcCCC---HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcCCCHH-HHHHHHHH
Q 004806 564 IGRSGAIGPLVDLLGNGT---PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAG-MVDKAVAV 631 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~---~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~~~~~-v~e~Al~~ 631 (729)
---.-.+|.++.+-.+.+ ..++..|+.+|..|.. .+.+.-.-.+-.++..|...|++..+ ++..|+.+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 111245677766666554 6789999999999988 55555555566788889998965544 45666654
No 337
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.43 E-value=25 Score=34.37 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=64.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc--CCHHHHHHHhcCCC-HHHHHHHHHHHHHhcc----Ccc
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGS-PEARENAAATLFSLSV----IED 559 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~--g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~----~~e 559 (729)
.+..+..+|.++++.-+..++..+..++... ....+.+. ..+..|+.+|+..+ ..+++.++.+|..|-. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4556778888888888887777776554332 13444343 47788999998765 5677777777776643 233
Q ss_pred hhhhhhcc---CcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 560 NKIKIGRS---GAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 560 ~k~~I~~~---g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
....+.-. ++++.++.+++. ......++.+|..|-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 33333222 455566666554 344445555555543
No 338
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=64.35 E-value=18 Score=42.83 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.|++++++.+..++..-+..+-.+..+ -...+.+.-.+|.+..-+.+.++.+++.++..+..|+---..+
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 45788899999888877776666655555443 2233455677888888888889999999998887775211111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccC-cHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG-AIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g-~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
......+..+.++-.+.+..+|.+..-+|..++.+... ..+.+ .+.+...-++++-...+.+++.++.....+-+.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 11222333333333333455666666666655543211 11222 233344456666667788888888877664443
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 634 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~n 634 (729)
.. +...+++.++-+. +++..++..|..++..
T Consensus 481 ~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 481 SE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hh--hhhhccccccccccCcccchhhHHHHHHHH
Confidence 33 4455666666665 5666666666555443
No 339
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=63.85 E-value=36 Score=30.49 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=56.7
Q ss_pred cchhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 004806 437 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 510 (729)
Q Consensus 437 ~~l~~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL 510 (729)
.++......+..|++.+.......+..++..|..+.+ ++.....+.+.|++..|-++-..-++..+...-.++
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444567889999999998877788999999999998 456778888899999987777666676665544444
No 340
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=63.80 E-value=48 Score=39.51 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=84.5
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIK 563 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~ 563 (729)
..++|.|...+++.+..+|+.++.++-..+..-+ ...+..-.+|.|-.+ ++.....++.+++.++.-+.. ....
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLDK 462 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHHH
Confidence 3567888888888999999999999988864322 233344456666555 344568889899988888761 1111
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM 618 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL 618 (729)
..-..-+.++....+..++.+....+.+..++.....+...++...++|.++.+.
T Consensus 463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 1111334444555556788888888888888766444434455566777777776
No 341
>PLN02436 cellulose synthase A
Probab=63.79 E-value=4.5 Score=50.01 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=36.9
Q ss_pred ccccCccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-.|.||++ ..-||-+. .||.-.||.|.+-=.++|...||+|+.++.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999985 35567665 389999999996666778888999999886
No 342
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=62.77 E-value=5.4 Score=42.30 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=35.6
Q ss_pred cccccCcccc----ccCceecCCCccccHHHHHHHHhcCCCCCCCCCc
Q 004806 140 DFCCPLSLEL----MTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 183 (729)
Q Consensus 140 ~f~CpI~~~l----m~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 183 (729)
++.||||.+- +.+|..++|||+.-..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4569999865 4678889999999888888888877 89999954
No 343
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.51 E-value=36 Score=39.64 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=72.2
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
+|.+..++..+.+++..++...+.+|..++-.-..-....-+|.+..|.+-+-...+.+|..|+.+|+.+-....+-..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 3778888888899999999999999988864433333444567777777777677788999999999987542222111
Q ss_pred hccCcHHHHHHhhcC-CCHHHHHHHHHHHHhccc
Q 004806 565 GRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSI 597 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~ 597 (729)
.....|+.+++. ++.++++.|+ .|+..
T Consensus 169 ---~~~n~l~~~vqnDPS~EVRr~al---lni~v 196 (885)
T COG5218 169 ---RIVNLLKDIVQNDPSDEVRRLAL---LNISV 196 (885)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence 223456677765 4667777654 45543
No 344
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.65 E-value=2.3e+02 Score=35.23 Aligned_cols=132 Identities=16% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--------CCHHHHHHHHHHHHHhhc--C-CccHHHHHhcCCHHH
Q 004806 463 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--------SETKIQENAVTALLNLSI--N-DNNKSAIANANAIEP 531 (729)
Q Consensus 463 ~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--------~d~~v~e~Al~aL~nLs~--~-~~~k~~I~~~g~I~~ 531 (729)
+|...+..+++.. .+..+ .|.++.++..|.+ .++.-.+-|+.++++|+. . ...-.-.++.=.+..
T Consensus 391 Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 4555565555532 11222 3667778887762 356677889999988862 1 111122333334555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcH
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~e 600 (729)
+.-.++++.--+|..|++++...+. +-.....+ ..++......|. +....++..|+.||..+-.+.+
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 6666777777789999999998884 22222222 245556666666 6677899999999998866544
No 345
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=61.39 E-value=8 Score=41.71 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=44.4
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
..+-|-||+|.+-|.-|+.= .-||.-|-.|=. .-...||.|+.++.. +-++++.+.++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 45568899999999999764 459999988843 223569999998874 3566677776654
No 346
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=60.95 E-value=1.8e+02 Score=28.93 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHHHHHHHHcC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIANWCELNN 208 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~I~~~~~~~~ 208 (729)
-+..|.||-|+.-+ ||+-+ +. .+..||.|+.+|...+-. --..|++.|+..-+.-+
T Consensus 114 ~~~~Y~Cp~C~~ry----------tf~eA-----~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 114 NNMFFFCPNCHIRF----------TFDEA-----ME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCCEEECCCCCcEE----------eHHHH-----hh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 36789999987422 34422 22 358899999998764311 12456777777665544
No 347
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.68 E-value=31 Score=32.92 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=58.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhC------CCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~s------g~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+.-|++++.. ....|+++...++..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999988864 466788888889899999963 347899999988876654
No 348
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.66 E-value=17 Score=44.08 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=85.0
Q ss_pred CCHHHHHHHhcCC--------CHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHHHhhc----CCCHHHHH
Q 004806 527 NAIEPLIHVLQTG--------SPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVDLLG----NGTPRGKK 586 (729)
Q Consensus 527 g~I~~Lv~lL~s~--------~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv~LL~----~~~~~v~~ 586 (729)
+++..++.+.... -.++..+|+.+|.-+...++.+..+... .+|..+++.-. ..++++++
T Consensus 601 s~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~ 680 (1516)
T KOG1832|consen 601 SGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ 680 (1516)
T ss_pred HHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence 4555555555422 2457788889988888888887776542 24555544332 12789999
Q ss_pred HHHHHHHhcccCc-HHH-----------------------------------HHHHHcCcHHHHHHhcC------CCHHH
Q 004806 587 DAATALFNLSIYH-ENK-----------------------------------ARIVQAGAVKHLVDLMD------PAAGM 624 (729)
Q Consensus 587 ~Al~aL~nLs~~~-en~-----------------------------------~~lv~~G~V~~Lv~LL~------~~~~v 624 (729)
.|+.+|.|+...+ +++ ..+....+|..|++||. ....+
T Consensus 681 ~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~I 760 (1516)
T KOG1832|consen 681 PALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCI 760 (1516)
T ss_pred HHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHH
Confidence 9999999985322 111 11223679999999983 23567
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCc
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENG 650 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~ 650 (729)
+..|+.+|.-|+.+++.|+.+.+-..
T Consensus 761 RalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 761 RALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHHHhccccCcHHHHHHHhCcc
Confidence 88899999999999999998876543
No 349
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=60.47 E-value=5.9 Score=43.65 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=26.1
Q ss_pred ecCCCccccH-----HHHHHHHhc------------CCCCCCCCCccCCCCCC
Q 004806 155 IVASGQTYER-----AFIKKWIDL------------GLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 155 ~~~~G~ty~r-----~~I~~~~~~------------~~~~cP~t~~~l~~~~l 190 (729)
.-+|+.-||| .|+-+||.. +..+||.||.++...|.
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 3467777765 799999964 23469999999876543
No 350
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=60.28 E-value=2.7 Score=42.98 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=37.6
Q ss_pred cccccCcc-ccccCcee----cC-CCccccHHHHHHHHhcCCCCCC--CCCccCC
Q 004806 140 DFCCPLSL-ELMTDPVI----VA-SGQTYERAFIKKWIDLGLFVCP--KTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~-~lm~dPV~----~~-~G~ty~r~~I~~~~~~~~~~cP--~t~~~l~ 186 (729)
+-.||||. +.+-.|=+ -| |=|..|-+|..+.|..|+..|| -|+..|.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45699998 66666743 25 9999999999999999999999 7766554
No 351
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=59.81 E-value=31 Score=32.67 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC-CHH---HHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS-ETK---IQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s~-d~~---v~e~Al~aL~nLs 514 (729)
.+..++.|-+.|+++++.+|..|+..|-.+.++. ...+..+....++..|..++... ... |++.++..|...+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999975 45666777778999999988753 333 8888888887664
No 352
>PRK14707 hypothetical protein; Provisional
Probab=59.51 E-value=6.3e+02 Score=34.69 Aligned_cols=256 Identities=17% Similarity=0.122 Sum_probs=126.0
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCccHH
Q 004806 445 QVRKLVEDLK-STSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKS 521 (729)
Q Consensus 445 ~V~~Lv~~L~-s~~~evq~~Al~~L~-~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~-nLs~~~~~k~ 521 (729)
.|...+..|. =.+..+..+|+..|. .++. ....+..+-..+.-..|-.|-+-.+..+-..|+..|. .|..++.-+.
T Consensus 248 ~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~ 326 (2710)
T PRK14707 248 ELGNALNALSKWADTPVCAAAASALAERLVD-DPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCK 326 (2710)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhh
Confidence 3444445444 223334445555554 4443 3344444433333333333334456555555544443 3443333222
Q ss_pred HHHhcCCHHHHHHHhcC-CC-HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh-cccC
Q 004806 522 AIANANAIEPLIHVLQT-GS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN-LSIY 598 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s-~~-~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n-Ls~~ 598 (729)
. ++.-.+..++.-|+. ++ ..-+..|..+-.-|..+++.+..+--.|+-..|-.+-+=++..+...|+.+|.. |..+
T Consensus 327 ~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d 405 (2710)
T PRK14707 327 A-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDD 405 (2710)
T ss_pred c-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC
Confidence 2 233344445555544 22 344444455555666677777776655555555455555666666666666654 5545
Q ss_pred cHHHHHHHHcCcHHHHHHhc-C-CCHHHHHHHHHHHHH-HhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-D-PAAGMVDKAVAVLAN-LATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALL 674 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~-~~~~v~e~Al~~L~n-La~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~ 674 (729)
.+-+..+-..| |..+++-| + ++..++..++..|+- ++...+-+..+--. .|...+..|.. .+......|+..|.
T Consensus 406 ~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~-~va~~LnalSKWPd~p~c~~aa~~La 483 (2710)
T PRK14707 406 LELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPI-NVTQALDALSKWPDTPICGQTASALA 483 (2710)
T ss_pred hhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChH-HHHHHHHHhhcCCCChhHHHHHHHHH
Confidence 55555444444 44555555 3 566666666665554 44444555544222 24444554543 45566666666665
Q ss_pred HHhhCCHhhHHHHHhCCCHHHHHHhhhCCC
Q 004806 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGT 704 (729)
Q Consensus 675 nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~ 704 (729)
.=..+.++.++.+--.++...|-.|.+-.+
T Consensus 484 ~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 484 ARLAHERRLRKALKPQEVVIALHSLSKWPD 513 (2710)
T ss_pred HHhcccHHHHhhcCHHHHHHHHHHhhcCCC
Confidence 544444444444433444455555554443
No 353
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=59.38 E-value=3.2e+02 Score=31.34 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhh-H-HHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDN-R-MVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~n-r-~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~ 518 (729)
...|..+++.++.. ..+.+..|+..|..+....... . +.+. ..+..++..|.+ .+...+..|+++|..++.++.
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 35677888888744 5566778888787666544211 1 1111 234567777776 678889999999999987654
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHH-HHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAA-TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~-aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
.+-.=...-+|-.+++.-.+...++...|.. ++.-++.....+ .|..+..++...+...-..++..+-.|+.
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHh
Confidence 3221111124455555555555555444443 344444432222 23333444444444433344444444332
Q ss_pred CcHHHHHH--HHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHh
Q 004806 598 YHENKARI--VQAGAVKHLVDLMD-PAAGMVDKAVAVLANLA 636 (729)
Q Consensus 598 ~~en~~~l--v~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa 636 (729)
.-. +..+ +=....|.+++-.+ .+..++..|+.+|-.+.
T Consensus 436 ~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 436 RLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 111 0111 11335555666554 34555666666555443
No 354
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.73 E-value=4.4 Score=41.83 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.3
Q ss_pred cCce-ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 151 TDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 151 ~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
.||. ++.|+|.||-.|...-.. ..||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc
Confidence 5565 468999999998654332 269999999876666555
No 355
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=57.69 E-value=41 Score=33.43 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=35.9
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc-cHHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANWCEL 206 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-N~~l~~~I~~~~~~ 206 (729)
-+..|.||.|.-= .||+.++ ..+ .+||.||..|...+-.+ ...|.+.|+....+
T Consensus 110 ~~~~y~C~~~~~r----------~sfdeA~-----~~~-F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHVK----------YSFDEAM-----ELG-FTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCCc----------ccHHHHH-----HhC-CCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 3567999988752 2566555 333 78999999987654443 45577777766554
No 356
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.57 E-value=76 Score=30.92 Aligned_cols=145 Identities=14% Similarity=0.069 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
...+..|++.|+.+ +..+++++++.|+.|..-++.....+....- .-. -...+...... .+.+....+ .-.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~---~l~~~~~~~-~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDI---SLPMMGISP-SSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhh---HHhhccCCC-chH
Confidence 46778888889855 6889999999999887766644332221100 000 00001111111 111111111 222
Q ss_pred HHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 522 AIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~-e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
...-.-++..|+++|++.+. .-...++.++.++-.....+..-.-.-++|.++..++..+...++.-..-|..|
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 23333467788888887663 333445566555543322222111236788888888877666666655555444
No 357
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=57.30 E-value=6.6 Score=48.72 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=36.5
Q ss_pred ccccCcccc-----ccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
=.|.||++= .-||-+. .||.-.||.|.+==.++|+..||+|+.++.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999863 5567665 489999999995556778888999998876
No 358
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=57.27 E-value=7.9 Score=34.61 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=23.7
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCcc
Q 004806 157 ASGQTYERAFIKKWIDLGLFVCPKTRQT 184 (729)
Q Consensus 157 ~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 184 (729)
-|.|.|---||.+|++.. ..||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 488999999999999986 569999875
No 359
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=57.03 E-value=5.3 Score=43.69 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=35.2
Q ss_pred CcccccCcccccc--Cce--ecCCCccccHHHHHHHHhcC-CCCCCCCC
Q 004806 139 SDFCCPLSLELMT--DPV--IVASGQTYERAFIKKWIDLG-LFVCPKTR 182 (729)
Q Consensus 139 ~~f~CpI~~~lm~--dPV--~~~~G~ty~r~~I~~~~~~~-~~~cP~t~ 182 (729)
-++.|-.|++..- |-- -+||.|.|--.|+..++.++ ..+||.||
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4688999998753 222 37999999999999999754 56799998
No 360
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=56.65 E-value=2.5e+02 Score=29.13 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-C---------C---------HHHHHHHHHHHHHHhCCcchH
Q 004806 582 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-P---------A---------AGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 582 ~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~---------~---------~~v~e~Al~~L~nLa~~~e~r 642 (729)
......++..+..|...+++...+...+.++.+.+.|. . + ..+...-+..|+.|+.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 56667788888888888888887778888888887761 1 0 123344567889999999999
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 643 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..+-+.+....+..++...+. .....-+|.+|=...+... =..|-+.+.+++..+|..|...|+.+-
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~--------R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHP--------RIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987543 2222234444422222222 223556778889999999999888764
No 361
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.62 E-value=92 Score=35.74 Aligned_cols=150 Identities=15% Similarity=0.034 Sum_probs=87.7
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhh-hccCcHHH
Q 004806 495 LHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKI-GRSGAIGP 572 (729)
Q Consensus 495 L~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I-~~~g~I~~ 572 (729)
..+++..++..|+..|.|++..-..+..-...-.+..++.-|.++ +.+++..|+.+|.-+...-.++... +-..+.-.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 345677889999999999976633232222334566666655444 4788888888887665422222211 11133345
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhcccCcH--HHHHHHH---cCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHH
Q 004806 573 LVDLLGNGTPRGKKDAATALFNLSIYHE--NKARIVQ---AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAI 645 (729)
Q Consensus 573 Lv~LL~~~~~~v~~~Al~aL~nLs~~~e--n~~~lv~---~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i 645 (729)
+..++.+.+++.+..|..++..|+.... .+..+.+ .+..+.++.+=+++ ..+-.|+......|.-.-++++.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHHHHHHHHHHHhcCchhHHHHH
Confidence 6677788899999999998888876433 3333333 22333322222333 34456777777666654455544
No 362
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.21 E-value=50 Score=31.10 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=58.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCC--HHHHHHHHHHHHHhhcCc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~--~rvr~~A~~lL~~L~~~~ 722 (729)
++..|.+.|.++++.++..|+.+|-.+..+.+ .....+.....+..|..++.... +.+++++..++......-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999988854 46677778888999999888754 449999998887765543
No 363
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=56.01 E-value=45 Score=32.86 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.1
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCcc
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQT 184 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 184 (729)
.+.||+|+-++.+. .+..||.|+.|
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 68999997776663 35679999876
No 364
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.96 E-value=4e+02 Score=31.31 Aligned_cols=203 Identities=18% Similarity=0.152 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH----HHhcC---cHHHHHHHHcCCCHH--HHHHHHHHHHHhh
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV----IANCG---AINILVDMLHSSETK--IQENAVTALLNLS 514 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~----I~~~G---aI~~Lv~LL~s~d~~--v~e~Al~aL~nLs 514 (729)
..+-.|++.|+.-+.+.-......+.. .. ...|.. +..+| ++..+...+...... -...++..+....
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~ 387 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Confidence 355566666665554444444444332 10 233333 33333 566666667664321 1122222222222
Q ss_pred cCCccHHHHHhcCCHHHHHHHhcCC----CHHHHHHHHHHHHHhcc----CcchhhhhhccCcHHHHHHhhc----CCCH
Q 004806 515 INDNNKSAIANANAIEPLIHVLQTG----SPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLG----NGTP 582 (729)
Q Consensus 515 ~~~~~k~~I~~~g~I~~Lv~lL~s~----~~e~r~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~LL~----~~~~ 582 (729)
..+. ...+..+..++.++ ...++..|+-++.+|.. .............++.|...|. ..+.
T Consensus 388 ~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 388 RYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred hcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Confidence 2221 13466677777653 34566666666666543 2221111112345666666554 3455
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC----CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHH
Q 004806 583 RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD----PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEV 657 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~----~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~l 657 (729)
.-+..++.+|.|+... ..++.|..++. ....++..|+.+|..++. ++. .+.+.|+.+
T Consensus 461 ~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i 522 (574)
T smart00638 461 EEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPI 522 (574)
T ss_pred hheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHH
Confidence 5567788888887432 23344555552 345678889999998875 221 234556666
Q ss_pred Hcc--CCHHHHHHHHHHHH
Q 004806 658 VEL--GSARGKENAAAALL 674 (729)
Q Consensus 658 L~s--~s~~~ke~A~~aL~ 674 (729)
+.. .+.+++-.|+.+|.
T Consensus 523 ~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HcCCCCChHHHHHHHHHHH
Confidence 654 34555555544443
No 365
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.64 E-value=2e+02 Score=37.51 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=68.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhc-cCcchhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKI 564 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS-~~~e~k~~I 564 (729)
+.+..++.+|..+-..++-.|+.+|.++..-+. ..+....+-..+..-+.+.+..+|+.|+..+.... .+++.-...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 567778888888889999999999998864321 11111223333445566677889999998887432 222222211
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
...+..-+.+....+++.+.+.|+.+|...
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 233444445566788999999999888743
No 366
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.56 E-value=31 Score=41.99 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=27.1
Q ss_pred CCCcccccCccc-cccCcee-cCCCccccHHHHHHHHhc
Q 004806 137 IPSDFCCPLSLE-LMTDPVI-VASGQTYERAFIKKWIDL 173 (729)
Q Consensus 137 ~p~~f~CpI~~~-lm~dPV~-~~~G~ty~r~~I~~~~~~ 173 (729)
+-..=+|-+|.. ++..|-. .||||.|-|.||+++...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 444456888873 4445765 599999999999998653
No 367
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.43 E-value=1.1e+02 Score=35.63 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=71.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcH
Q 004806 493 DMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI 570 (729)
Q Consensus 493 ~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I 570 (729)
.+|.+.++-++.+.+-++. |+. .. ...|++..|++. .+.++.++|..|+-+|.-++..+ ...+
T Consensus 523 ell~d~ds~lRy~G~fs~a-lAy~GT------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~l 587 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLA-LAYVGT------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLL 587 (926)
T ss_pred HHhcCchHHhhhccHHHHH-HHHhcC------CcchhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchh
Confidence 3455555555555544442 111 11 123566777776 66778888888888888776532 3455
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 571 GPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 571 ~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...+++|. +.+.-++...+.+|.-.|.....+. ++..|-.|+ ++..-++..|+-+++.+..
T Consensus 588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 66666665 4477777777777776655432222 334444455 4445566667766766654
No 368
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.33 E-value=47 Score=31.03 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=50.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHH-HHHh-CCCHHHHHHhhh-----CCC---HHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCS-MVLQ-EGAVPPLVALSQ-----SGT---PRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~-~vl~-~G~v~~Lv~Ll~-----sg~---~rvr~~A~~lL~~L~ 719 (729)
++..|.+-|...++-++..|+.+|-.||...+.... .+.+ .-.|..+...-. .|+ ..||.+|.+++.++.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 356778888888899999999999999998754333 3333 234444544443 232 469999999999986
Q ss_pred cC
Q 004806 720 NQ 721 (729)
Q Consensus 720 ~~ 721 (729)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 54
No 369
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.69 E-value=37 Score=32.15 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=58.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCC-CHH---HHHHHHHHHHHhhcCc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSG-TPR---AKEKAQALLSYFRNQR 722 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg-~~r---vr~~A~~lL~~L~~~~ 722 (729)
++..|.+.|.++++.++..|+.+|-.+..+.+ .....+.....+..|..++... ... |++++..+|......-
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999874 5667777777888999988765 333 8999999887766543
No 370
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=52.53 E-value=2.8e+02 Score=28.61 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=80.0
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHH
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPL 532 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~L 532 (729)
-+..++..+...+..|..++.+...+. .-++..|..+...+.......+...+..+-.. +++.. +.+..+
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f----~~L~~~ 79 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHF----PFLQPL 79 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHH----HHHHHH
Confidence 346678889999999999999651111 12355666677666666655556666555322 12211 444444
Q ss_pred HHHh--------cCC--CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhcc
Q 004806 533 IHVL--------QTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 533 v~lL--------~s~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs 596 (729)
+..+ ..+ ..+.....+.++..++....+ .-...++.+..+| +..++.++..|+.+|..||
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4441 111 244555556677777764333 1235678888888 6778888999999999988
No 371
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=52.00 E-value=1e+02 Score=29.98 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=78.5
Q ss_pred CcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHH
Q 004806 568 GAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 646 (729)
Q Consensus 568 g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~ 646 (729)
..++.|+.+|+.+ +..+++.++++|+.|-.-+..+.+....+.-..- --+.........+ .+.. ....-+...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~--~~~~~~~~~~~~l---~~~~-~~~~~ee~y 83 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS--SENSNDESTDISL---PMMG-ISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc--cccccccchhhHH---hhcc-CCCchHHHH
Confidence 4567788888876 6899999999999997766655553322111000 0001111111111 1111 111233333
Q ss_pred hCCcHHHHHHHHccCCHH-HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 647 QENGIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 647 ~~g~I~~Lv~lL~s~s~~-~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
-.-++..|+.+|+..+-. -...++.++.++...-...+-..+ .-++|.++..+++..+..++--..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444678888888765432 333567777776644332332222 23789999999977777776655444433
No 372
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.84 E-value=9.6 Score=47.22 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=36.9
Q ss_pred ccccCccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-.|.||++ ..-||-+. .||.-.||.|.+-=.++|+..||+|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45999985 35667775 489999999996556778888999999886
No 373
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=50.47 E-value=2.3e+02 Score=31.96 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----------CCCHHHHHHHHHHHHhcccC-
Q 004806 531 PLIHVLQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----------NGTPRGKKDAATALFNLSIY- 598 (729)
Q Consensus 531 ~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----------~~~~~v~~~Al~aL~nLs~~- 598 (729)
.|+.+|..+. ...+...+.++.-|+.+...-.-+.....+..|+.+-+ ..+..+...|+.+|+|+..+
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4556666555 33444555666666655443333332233333333321 11357788999999999874
Q ss_pred cHHHHHHHHcCcHHHHHHhc----CC--CHHHHHHHHHHHHHHhC-CcchHHHH-HhCCcHHHHHHHHcc
Q 004806 599 HENKARIVQAGAVKHLVDLM----DP--AAGMVDKAVAVLANLAT-IPDGRVAI-GQENGIPVLVEVVEL 660 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL----~~--~~~v~e~Al~~L~nLa~-~~e~r~~i-~~~g~I~~Lv~lL~s 660 (729)
...+..+.++..+..+++.+ +. ...+...=+.+|.-|.. ..+.|..+ .+.+|++.+..++..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 45677788888888888876 11 11222223333443333 44666655 567889999988853
No 374
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.06 E-value=37 Score=33.13 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
-+..|.||-|..=+ ||+- .+. .+.+||.||.+|...+
T Consensus 106 ~~~~Y~Cp~c~~r~----------tf~e-----A~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 106 NNMFFICPNMCVRF----------TFNE-----AME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCCeEECCCCCcEe----------eHHH-----HHH-cCCcCCCCCCEeeecc
Confidence 36789999877321 2222 222 3588999999986643
No 375
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.05 E-value=12 Score=26.44 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.2
Q ss_pred CCCCCCCCCcc
Q 004806 174 GLFVCPKTRQT 184 (729)
Q Consensus 174 ~~~~cP~t~~~ 184 (729)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44579999874
No 376
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=47.81 E-value=13 Score=46.39 Aligned_cols=46 Identities=33% Similarity=0.545 Sum_probs=32.4
Q ss_pred CCCCCcccccCcc--ccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC-CCcc
Q 004806 135 VPIPSDFCCPLSL--ELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIP 192 (729)
Q Consensus 135 ~~~p~~f~CpI~~--~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~p 192 (729)
-++|.++.||=|+ +.+.|+ .+.+|. |- -...||+|+.||..+ +=+|
T Consensus 909 NPL~PHY~Cp~Cky~Ef~~d~-svgsGf--DL---------pdK~CPkCg~pl~kDG~dIP 957 (1444)
T COG2176 909 NPLPPHYLCPECKYSEFIDDG-SVGSGF--DL---------PDKDCPKCGTPLKKDGHDIP 957 (1444)
T ss_pred CCCCccccCCCCceeeeecCC-CcCCCC--CC---------CCCCCCcCCCccccCCCCCC
Confidence 4689999999998 677777 344553 21 246799999998654 3344
No 377
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.71 E-value=8.7 Score=43.40 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=51.5
Q ss_pred CCCCCcccccCc-cccccCceec--CCCccccHHHHHHHHhcCCCCCCCCCcc-CCCCCCcccHHHHHHHHHHHH
Q 004806 135 VPIPSDFCCPLS-LELMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 135 ~~~p~~f~CpI~-~~lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~-l~~~~l~pN~~l~~~I~~~~~ 205 (729)
...|+++.||+| .+.|.|-+++ .|+.+||-.||.+.+..+ .||.|..- .....+.|+..++..+..-..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~--~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK--SMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc--cCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 468999999999 8999999988 589999999999998764 34555432 333466777777666665433
No 378
>PF14353 CpXC: CpXC protein
Probab=47.41 E-value=15 Score=34.27 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=31.8
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcC--CCCCCCCCccCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 186 (729)
++.||-|+.-|.=.|-..-.-.-+....++-+... ..+||.||..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36799999988877765544455666666666432 246999998753
No 379
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=46.94 E-value=1.6e+02 Score=31.18 Aligned_cols=144 Identities=14% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHHHHhcCCHH-HHHHHhcCC--CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 520 KSAIANANAIE-PLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 520 k~~I~~~g~I~-~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
+..+.+.+.+. -|+.+|.+. ++.+...++.+|.+|+..-+.. .... ..+...+.........+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~--~~~~-----------~~~~~~~~~~~~l~~~l- 98 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL--VESQ-----------PKDKNQRRNIPELLKYL- 98 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh--ccCC-----------CCChHHHHHHHHHHHHH-
Confidence 55566667776 477777543 4677778888888886521110 0000 00111111111121222
Q ss_pred cCcHHHHHHHHcCcHHHHHHhc----C--------CCHHHHHHHHHHHHHHhCCcch-------------H----HHHHh
Q 004806 597 IYHENKARIVQAGAVKHLVDLM----D--------PAAGMVDKAVAVLANLATIPDG-------------R----VAIGQ 647 (729)
Q Consensus 597 ~~~en~~~lv~~G~V~~Lv~LL----~--------~~~~v~e~Al~~L~nLa~~~e~-------------r----~~i~~ 647 (729)
...|..+.+.+++.+++.++ . .+..+.+.++..+.|+...++. + .++.+
T Consensus 99 --~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~ 176 (266)
T PF04821_consen 99 --QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFE 176 (266)
T ss_pred --HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHH
Confidence 12345556666666666654 1 1345778899999999765321 1 23345
Q ss_pred CCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhC
Q 004806 648 ENGIPVLVEVVELG-SARGKENAAAALLQLCTN 679 (729)
Q Consensus 648 ~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~ 679 (729)
.|+...|+.+..+. ...-....+.++..|..+
T Consensus 177 ~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 177 SGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred cCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 67777777777654 122222455566665554
No 380
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=46.03 E-value=9.5 Score=40.33 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=19.9
Q ss_pred cccccCcccccc---CceecCCCccccHHH
Q 004806 140 DFCCPLSLELMT---DPVIVASGQTYERAF 166 (729)
Q Consensus 140 ~f~CpI~~~lm~---dPV~~~~G~ty~r~~ 166 (729)
.|.||+|+.-|. ..+.-+.||+||.+-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 389999999885 223445699998864
No 381
>PHA02862 5L protein; Provisional
Probab=45.96 E-value=18 Score=34.53 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=32.1
Q ss_pred cccCccccccCceecCCCc-----cccHHHHHHHHhcC-CCCCCCCCccCCC
Q 004806 142 CCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDLG-LFVCPKTRQTLAH 187 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 187 (729)
.|=||.+-=.+. .-||.. -.-++|+++|+... ...||.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 477888765444 456543 36789999999754 4569999998854
No 382
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=45.72 E-value=40 Score=32.34 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=22.9
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHh-cCCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWID-LGLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~-~~~~~cP~t~~~l~~~ 188 (729)
...|.||-|+ ++|.-.-...... .+..+||.|+.+|...
T Consensus 97 ~~~Y~Cp~C~------------~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQ------------SKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCC------------CEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 5689999655 4444222222221 2336799999988653
No 383
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=45.52 E-value=1.8e+02 Score=28.96 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=75.0
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVA 644 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~ 644 (729)
..++.+++++.+.+..++..|+..|.-+... -++. ..++|.|+.|. +++..++..|...+..+...-++ ...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567788888888999999999887765221 0111 12678888887 67889999999999999863322 211
Q ss_pred HHhCCcHHHHHHHHcc--CCHH--H---HHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC
Q 004806 645 IGQENGIPVLVEVVEL--GSAR--G---KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s--~s~~--~---ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
-... |+..-..+-+. ++.. . ...-..-|+.++..+...+..+ +..|++.+..
T Consensus 83 ~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 83 RYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 1112 34444333321 1111 1 4555667777777666666655 4445554443
No 384
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=45.24 E-value=21 Score=34.66 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.5
Q ss_pred CcccccCccccccCceecCCCc-----cccHHHHHHHHhcC-CCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDLG-LFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 187 (729)
.+-.|=||.+=.. +..-||.. ..=++|+++|+..+ ...||.|+.++..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3457889987643 44556643 35799999999865 4469999998754
No 385
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=44.38 E-value=1.7e+02 Score=32.19 Aligned_cols=127 Identities=15% Similarity=0.063 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcC
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-------ETKIQENAVTALLNLSIN 516 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-------d~~v~e~Al~aL~nLs~~ 516 (729)
.....+.+.+.+.+...+..|+..|+.=.. =...+|.++.++... +..+....+..+..|..|
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~g----------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDPG----------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCCC----------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 345566666666666666666665543211 124577777777532 455556666666667666
Q ss_pred CccHHHHHhcCCHHHHHHHhc----------CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC
Q 004806 517 DNNKSAIANANAIEPLIHVLQ----------TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG 580 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL~----------s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~ 580 (729)
+.-.-...-.-.++.++..|- ..+..+|..|+.+|..++..-.....-....++..|.+.|.+.
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 654433333346677665552 1236799999999999985322222222334455555555443
No 386
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.37 E-value=6e+02 Score=30.19 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=62.8
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc---CcHHH
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI---YHENK 602 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~---~~en~ 602 (729)
.|.+..+++-+.+.+..+|..++.+|.-++-.-..-......|.+..|..-+-+..+.++..|+.+|..+-. +++|+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 466777888888889999999999888776432222222334677777777777788999999999987643 44443
Q ss_pred HHHHHcCcHHHHHHhc--CCCHHHHHHH
Q 004806 603 ARIVQAGAVKHLVDLM--DPAAGMVDKA 628 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL--~~~~~v~e~A 628 (729)
. +..|+.++ +++.+++..|
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHH
Confidence 2 22444455 4445555443
No 387
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=43.30 E-value=2.6 Score=35.22 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=22.5
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+..||.|+..| .-..|+.+|-.|-..+... ..||.|+++|.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~~--a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKKE--AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEEE--EE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECccccccceec--ccCCCcccHHH
Confidence 46799999853 3345788888886654443 35999999875
No 388
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.16 E-value=1.8e+02 Score=26.03 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=47.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHH
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 550 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~a 550 (729)
+.+..|+.-...+..-..+.++..|..|..++.....+.+-|++.-|-++=..-++..+...-.+
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55566666666666668899999999999999888888889988886666655555555444433
No 389
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.51 E-value=17 Score=25.88 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=7.6
Q ss_pred CCCCCCCCcc
Q 004806 175 LFVCPKTRQT 184 (729)
Q Consensus 175 ~~~cP~t~~~ 184 (729)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 390
>PLN02400 cellulose synthase
Probab=42.48 E-value=12 Score=46.68 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred ccccCccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
=.|.||++ ..-+|-+. .||.-.||.|.+==-++|+..||+|+.++.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 37999985 35567665 489999999995446678788999999886
No 391
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=42.20 E-value=21 Score=42.64 Aligned_cols=48 Identities=10% Similarity=-0.073 Sum_probs=38.2
Q ss_pred CCCCCcccccCccccccCce----ecC---CCccccHHHHHHHHhc-----CCCCCCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPV----IVA---SGQTYERAFIKKWIDL-----GLFVCPKTR 182 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV----~~~---~G~ty~r~~I~~~~~~-----~~~~cP~t~ 182 (729)
...++.-.|++|..-+.+|| +.+ |+|.+|-.||..|.+. .+..||+|.
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 34677889999999999987 345 8999999999999874 234577773
No 392
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.84 E-value=3.3e+02 Score=35.72 Aligned_cols=106 Identities=10% Similarity=0.185 Sum_probs=65.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHH
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARI 605 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~l 605 (729)
+++..++.+|....+.+|..|+.+|..+...+.. .+....+-..+-.-+.+....++.+|+..+..... +++...+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4667777788877788888888888888653321 11112223333344556677888888888875433 44433333
Q ss_pred HHcCcHHHHHH-hcCCCHHHHHHHHHHHHHHhCCc
Q 004806 606 VQAGAVKHLVD-LMDPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 606 v~~G~V~~Lv~-LL~~~~~v~e~Al~~L~nLa~~~ 639 (729)
.+ .+.+ ++++...++..++.+|.-+|...
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 22 1222 34667778888888888888733
No 393
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.66 E-value=1.5e+02 Score=32.27 Aligned_cols=134 Identities=18% Similarity=0.248 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcccCcH-HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHh
Q 004806 570 IGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQ 647 (729)
Q Consensus 570 I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e-n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~ 647 (729)
+...+..|.+.+...+..++..|..|+.++. ....+. ..++-.+++-++ ....+...|+.+++-|.+.-.. .+.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--SIDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3445556666667777777777777777554 111111 123333444442 4456666777777776652111 1111
Q ss_pred CCcHHHHHHHH-cc---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 648 ENGIPVLVEVV-EL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 648 ~g~I~~Lv~lL-~s---~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
.+..++..| .. .+.-+++.|-.+|..+..+-.- ..+++.|...++.-.++++.++..+.
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccc
Confidence 233333333 22 3445677777787777665321 12456666667777777777766543
No 394
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.22 E-value=2.5e+02 Score=28.14 Aligned_cols=137 Identities=21% Similarity=0.201 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhccChhhHHHH-------Hhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc
Q 004806 460 TQREATAELRLLAKHNMDNRMVI-------ANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526 (729)
Q Consensus 460 vq~~Al~~L~~La~~s~~nr~~I-------~~~------GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~ 526 (729)
++..|+.+|..+++..+ .|... -+. .....+.-++.++++.++..|+.+|..|-.+...--..++.
T Consensus 2 vR~~Al~~L~al~k~~~-~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTD-KRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcC-CceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 46677788888877521 22221 111 23444555667789999999999998885442211111110
Q ss_pred --------------------CCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcch-hhhhhc-cCcHHHHHHhhcCCCHH
Q 004806 527 --------------------NAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDN-KIKIGR-SGAIGPLVDLLGNGTPR 583 (729)
Q Consensus 527 --------------------g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~-k~~I~~-~g~I~~Lv~LL~~~~~~ 583 (729)
..-..|+..|..+ +.........+|..|.....+ |-..+- ...+..+..++.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1122345555544 466677778888888764333 332111 23445555666778888
Q ss_pred HHHHHHHHHHhccc
Q 004806 584 GKKDAATALFNLSI 597 (729)
Q Consensus 584 v~~~Al~aL~nLs~ 597 (729)
++..++.++..|..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888877654
No 395
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=39.99 E-value=15 Score=37.42 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=13.5
Q ss_pred cccccCccccccCce
Q 004806 140 DFCCPLSLELMTDPV 154 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV 154 (729)
.|.||+|+.+|..|+
T Consensus 260 GfvCsVCLsvfc~p~ 274 (296)
T COG5242 260 GFVCSVCLSVFCRPV 274 (296)
T ss_pred eeehhhhheeecCCc
Confidence 588999999999986
No 396
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=35 Score=38.29 Aligned_cols=69 Identities=13% Similarity=0.309 Sum_probs=42.0
Q ss_pred cccccCcc-ccccCce---ecCCCccccHHHHHHHHhcC-----CCCCCCCC--ccCCCC---CCcccHHHHHHHHHHHH
Q 004806 140 DFCCPLSL-ELMTDPV---IVASGQTYERAFIKKWIDLG-----LFVCPKTR--QTLAHT---TLIPNYTVKALIANWCE 205 (729)
Q Consensus 140 ~f~CpI~~-~lm~dPV---~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~--~~l~~~---~l~pN~~l~~~I~~~~~ 205 (729)
...|+||. +.+...- +..|||-||..|..+|+... ...||.-+ ..++.. .+.|+ .++.+.++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 46799999 4433212 46799999999999998731 23466533 334432 44444 55666666555
Q ss_pred HcCC
Q 004806 206 LNNV 209 (729)
Q Consensus 206 ~~~~ 209 (729)
+.-+
T Consensus 225 e~~i 228 (384)
T KOG1812|consen 225 EEVI 228 (384)
T ss_pred HHhh
Confidence 5433
No 397
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=39.63 E-value=4.9e+02 Score=27.60 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhc-----CCccHHHHHh------c-CCHHHHHHHhcCC--CHHHHHHHHHHHHHhccC
Q 004806 492 VDMLHSSETKIQENAVTALLNLSI-----NDNNKSAIAN------A-NAIEPLIHVLQTG--SPEARENAAATLFSLSVI 557 (729)
Q Consensus 492 v~LL~s~d~~v~e~Al~aL~nLs~-----~~~~k~~I~~------~-g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~ 557 (729)
+.+|++..+.-=..|+..|..+-. +++....+.+ . |..+.|..++-.| +....+.+..+|..|...
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Q ss_pred cc--------hhhhhhccCcHHHHHHhhcCCC----HHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-----CC
Q 004806 558 ED--------NKIKIGRSGAIGPLVDLLGNGT----PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----DP 620 (729)
Q Consensus 558 ~e--------~k~~I~~~g~I~~Lv~LL~~~~----~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-----~~ 620 (729)
.+ .+-.+.-.+.+|.++.-+..++ ......++..|..+| .-.....+..++... .+
T Consensus 93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a-------~~~~~~~La~il~~ya~~~fr~ 165 (262)
T PF14225_consen 93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA-------EAQGLPNLARILSSYAKGRFRD 165 (262)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH-------HhCCCccHHHHHHHHHhcCCCC
Q ss_pred CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhh
Q 004806 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALS 700 (729)
Q Consensus 621 ~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll 700 (729)
..+....++..|..-..-. .....+..|+++|.++.+..+.....+|..+-..-+-.+. .-...+.+|.+++
T Consensus 166 ~~dfl~~v~~~l~~~f~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL 237 (262)
T PF14225_consen 166 KDDFLSQVVSYLREAFFPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLL 237 (262)
T ss_pred HHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHh
Q ss_pred hCCCHHHHHHHHHHHHHhhcCcCcCCCC
Q 004806 701 QSGTPRAKEKAQALLSYFRNQRHGNAGR 728 (729)
Q Consensus 701 ~sg~~rvr~~A~~lL~~L~~~~~~~~~r 728 (729)
+++ --..|.++|...-....+...|
T Consensus 238 ~t~---~~~eAL~VLd~~v~~s~s~~~~ 262 (262)
T PF14225_consen 238 QTD---LWMEALEVLDEIVTRSGSPMDK 262 (262)
T ss_pred CCc---cHHHHHHHHHHHHhhcccccCC
No 398
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.14 E-value=2.1e+02 Score=30.49 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH-HHHHhcCcHHHHHHHH----c--------CCCHHHHHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDML----H--------SSETKIQENAVTA 509 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr-~~I~~~GaI~~Lv~LL----~--------s~d~~v~e~Al~a 509 (729)
...++.++.++.+.+++.+..++..|..+...-+... ..+...|....+-..| . .+...+...|..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 5689999999999999999999999999988543332 2356667666554433 3 2345566777777
Q ss_pred HHHhh
Q 004806 510 LLNLS 514 (729)
Q Consensus 510 L~nLs 514 (729)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 77763
No 399
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.10 E-value=96 Score=33.92 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccCcchhhhhhccC--cHHHHHHhhcCC---CHHHHHHHHHHHHhcccCcHHHHHHHH-------cC
Q 004806 542 EARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNG---TPRGKKDAATALFNLSIYHENKARIVQ-------AG 609 (729)
Q Consensus 542 e~r~~Aa~aL~nLS~~~e~k~~I~~~g--~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~~en~~~lv~-------~G 609 (729)
.+|..|..+|.++.........+...+ ++..|+++++.+ ...++..|+.+|..|+....-...++. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 355566666666665555556665554 999999999865 468899999999999875443333322 55
Q ss_pred cHHHHHH
Q 004806 610 AVKHLVD 616 (729)
Q Consensus 610 ~V~~Lv~ 616 (729)
++..+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555544
No 400
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=39.07 E-value=4.9e+02 Score=27.50 Aligned_cols=216 Identities=15% Similarity=0.106 Sum_probs=113.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhccCcchhhhhhc
Q 004806 490 ILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGR 566 (729)
Q Consensus 490 ~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s--~~~e~r~~Aa~aL~nLS~~~e~k~~I~~ 566 (729)
.|=..|.++|+.++..|+..|..+... +... ....-+..|+.+..+ .+......++.+|..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 345667889999999999998876432 2111 112224455544432 24444444566666554322211111 0
Q ss_pred cCcHHHHHHhhc--CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchH
Q 004806 567 SGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 567 ~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
...+..+.+-.. ......|..+...|..|.........-...+.+..++.+++ .+++-.-.++.++..+...=+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 112222222111 12355677777777777654322222223456777777773 566666677777776655222
Q ss_pred HHHHhCCcHHHHHHHHcc----------CCH--HHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHH
Q 004806 643 VAIGQENGIPVLVEVVEL----------GSA--RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~s----------~s~--~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~ 710 (729)
. ...+..+.+.+.. +++ -.++.=..+|.+.-...+.... -++|.|+.=+.++.+.+|.-
T Consensus 157 ---~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 157 ---I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ---c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHHHH
Confidence 1 2334445554421 121 1233333444443333332222 25888888888998889988
Q ss_pred HHHHHHHhhc
Q 004806 711 AQALLSYFRN 720 (729)
Q Consensus 711 A~~lL~~L~~ 720 (729)
+...|..+-.
T Consensus 228 ~L~tL~~c~~ 237 (262)
T PF14500_consen 228 SLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 401
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=38.89 E-value=4.2e+02 Score=27.93 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHhcCCCHH--------HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHh
Q 004806 525 NANAIEPLIHVLQTGSPE--------ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFN 594 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e--------~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~n 594 (729)
+..++++|+++++.++.. +-+....+|.+++ .|-+..|.+++.++ +.-++..|+.+|..
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 457899999999765421 2222233333332 47888999999887 45678889999999
Q ss_pred cccCc-HHHHHHHH
Q 004806 595 LSIYH-ENKARIVQ 607 (729)
Q Consensus 595 Ls~~~-en~~~lv~ 607 (729)
+...+ .-|..+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 87744 34555544
No 402
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=37.43 E-value=1.1e+02 Score=26.98 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 619 DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 619 ~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
++...++-.++..|..|..... ...+-...++..+...|...++-+--+|+..|..|+...++
T Consensus 14 dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 5667888899999999988665 11112234567777788888999999999999999988764
No 403
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=36.96 E-value=16 Score=28.57 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=11.4
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4899999999974
No 404
>PLN03086 PRLI-interacting factor K; Provisional
Probab=36.75 E-value=35 Score=40.07 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCCcccccCcccccc------------CceecCCCccccHHHHHHHHhc----CCCCCCCCCccCC
Q 004806 135 VPIPSDFCCPLSLELMT------------DPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLA 186 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~------------dPV~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~ 186 (729)
.+++..+.|+.|+.-|. -|+.-+||..+.|..+..|... ....||+|+..+.
T Consensus 448 ~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 448 EEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred cccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 34567788888876553 3444447777788777777653 2234888877664
No 405
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.73 E-value=28 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.8
Q ss_pred ccccCccccc--cCceec--CCCccccHHH
Q 004806 141 FCCPLSLELM--TDPVIV--ASGQTYERAF 166 (729)
Q Consensus 141 f~CpI~~~lm--~dPV~~--~~G~ty~r~~ 166 (729)
-.|++|++-| .|.+++ .||-.|=|.|
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 4699999999 788886 4999999999
No 406
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.45 E-value=2.1e+02 Score=34.31 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH------cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc---
Q 004806 570 IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ------AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP--- 639 (729)
Q Consensus 570 I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~------~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~--- 639 (729)
+..++.||.+.+-..+-.-+.++.|+...-.....+++ +..+..|++-| +..+-++.+|+.++..++.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45678888888888888888888888764333334443 22344444433 567888899999999987632
Q ss_pred -chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 640 -DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 640 -e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
..|..+ +...+..|+..+.-++.+|+..+..|-...
T Consensus 381 ~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 234444 456667777788889999998887765443
No 407
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=35.27 E-value=6.3e+02 Score=32.72 Aligned_cols=224 Identities=17% Similarity=0.122 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh--hHHHHHhcCcHHHHHHH-Hc------CC--CHHHHHHHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDM-LH------SS--ETKIQENAVTALL 511 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~--nr~~I~~~GaI~~Lv~L-L~------s~--d~~v~e~Al~aL~ 511 (729)
...+..|+..+-+...++|.-++-.|+.+.+.+.. ++.. .+.-++..|.-+ |. ++ -..+++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 57889999999999999998888888877664322 2211 111112221111 11 11 2346777777777
Q ss_pred HhhcCCccHHHHHhcCCHHHHHHHhcCCCHHH--------HHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHH
Q 004806 512 NLSINDNNKSAIANANAIEPLIHVLQTGSPEA--------RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR 583 (729)
Q Consensus 512 nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~--------r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~ 583 (729)
.+..+.+.... ...+..+..++.....++ +++.+ +..++-. ..-.-+++..++.|.+.+..
T Consensus 155 ~~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~-------~~~~~vl~~~i~~L~ds~dd 223 (1549)
T KOG0392|consen 155 AYLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLF-------QLLNLVLDFVIEGLEDSDDD 223 (1549)
T ss_pred HHHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHhhhhhcchH
Confidence 77554322111 123455555555543333 22222 2222210 00113455566667777888
Q ss_pred HHHHHHHHHHhcccCcH--HHHHHHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhCCcchHHHHH----hCCcHHHH
Q 004806 584 GKKDAATALFNLSIYHE--NKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIG----QENGIPVL 654 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~e--n~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~~i~----~~g~I~~L 654 (729)
++..|+..|.-....-. ....+ ..++..+..++ +.-..-.......|..++...+...... +.|.+|.+
T Consensus 224 v~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~ 301 (1549)
T KOG0392|consen 224 VRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL 301 (1549)
T ss_pred HHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence 88888888776654321 11112 22344444433 1111112233445555665553332222 23667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 655 VEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 655 v~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
.-++++.=..++..++..+..+....
T Consensus 302 ~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 302 WPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777666666777777776665543
No 408
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=34.93 E-value=2.4e+02 Score=30.00 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=48.2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc-HHH-HHHHHcCcHHHHHHhc-------------CCCHHHHHHHHHHH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENK-ARIVQAGAVKHLVDLM-------------DPAAGMVDKAVAVL 632 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~-en~-~~lv~~G~V~~Lv~LL-------------~~~~~v~e~Al~~L 632 (729)
-++|+++.++.+..+.+|..++.+|..+...- ... ..+.+.|..+.+-+.+ +....+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 46899999999999999999999999987632 222 2355677665554432 12234566777777
Q ss_pred HHHhC
Q 004806 633 ANLAT 637 (729)
Q Consensus 633 ~nLa~ 637 (729)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77744
No 409
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.87 E-value=1.2e+02 Score=27.76 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=32.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
+|+.|+.-|.+.+++|...|+.+|...+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 588999999999999999999999999877655554443
No 410
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.60 E-value=93 Score=36.30 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=46.4
Q ss_pred cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 004806 608 AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 608 ~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.|+|..|+..- +.+.+++..|+.+|+-+|... ...+...+++| .+.++-++...+.+|.--|++.+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 45666666653 567788888888888887642 23456667776 45677788877888888887765
No 411
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.59 E-value=21 Score=37.70 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=21.9
Q ss_pred cccHHHHHHHHhc------------CCCCCCCCCccCCCCC
Q 004806 161 TYERAFIKKWIDL------------GLFVCPKTRQTLAHTT 189 (729)
Q Consensus 161 ty~r~~I~~~~~~------------~~~~cP~t~~~l~~~~ 189 (729)
-.||+|+-+|+.. |..+||.||+.+...+
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 3678999999853 3467999999876543
No 412
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.47 E-value=37 Score=28.98 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=22.4
Q ss_pred ccccCcccc-----ccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 141 FCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 141 f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
-.|.||++= =-+|-++ .|+.-.||.|.+==.++|...||.|+.++...
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 358888752 2344454 47888999999988889988999999887643
No 413
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=33.34 E-value=26 Score=35.51 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=36.6
Q ss_pred ccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
..|.+|..|.-.=+.- .||..|-+.||+.++.+ ...||.|+--.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 3699999987665543 57888999999999998 4679999765544
No 414
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=33.18 E-value=18 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=8.4
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 4899999999974
No 415
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.26 E-value=4.9e+02 Score=31.54 Aligned_cols=133 Identities=23% Similarity=0.242 Sum_probs=82.7
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~-lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.-|.-|+.+|.+.+..+.+.+...|..+..... .. -.+..||. .+++++. .|+.+|..+ .+..
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~--~~----~l~~~l~~y~~~t~s~----~~~~il~~~---~~P~--- 67 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDR--EP----WLVNGLVDYYLSTNSQ----RALEILVGV---QEPH--- 67 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccc--hH----HHHHHHHHHHhhcCcH----HHHHHHHhc---CCcc---
Confidence 457789999999999998888887755532211 11 12444554 2444443 233444432 1110
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhC
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 637 (729)
+..++..|=+.+.. +..+..++..|..+.. .+.-...|++..+++.|++.| +.+..++..|+.+|..|-=
T Consensus 68 -~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 68 -DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred -HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 01234444455554 4567778888888876 566677888999999999988 5566667777777777643
No 416
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=32.03 E-value=6.3e+02 Score=26.67 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHH-HHHHHHcC--CCHHHHHHHHHHHHHhhc
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN-ILVDMLHS--SETKIQENAVTALLNLSI 515 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~-~Lv~LL~s--~d~~v~e~Al~aL~nLs~ 515 (729)
+.++.|.+.|+..++... ..+.++++.+.++ -|+.+|.+ +++.+...++..|.+|..
T Consensus 13 ~~LkdL~r~lr~dd~~~~---------------~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR---------------DVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHhCcchH---------------HHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 566777777775554321 2333444444444 35555543 378888999999999975
No 417
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.66 E-value=34 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=19.1
Q ss_pred cccccCccc----cccCceecC-CCccccHHHHHH
Q 004806 140 DFCCPLSLE----LMTDPVIVA-SGQTYERAFIKK 169 (729)
Q Consensus 140 ~f~CpI~~~----lm~dPV~~~-~G~ty~r~~I~~ 169 (729)
.-+||=|+. |=+||++.| ||.+|-|+..+.
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 345777764 456787766 677776665443
No 418
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.54 E-value=1e+03 Score=28.98 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh--hcCCccHHHHHhc---CCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhh
Q 004806 489 NILVDMLHSSETKIQENAVTALLNL--SINDNNKSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKI 562 (729)
Q Consensus 489 ~~Lv~LL~s~d~~v~e~Al~aL~nL--s~~~~~k~~I~~~---g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~ 562 (729)
|.|.+-|+..+..++.+|+..+.++ -.+++.-..-++. .....|..+|+++-+.+|..|..-++...+ +.+.-.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Q ss_pred hhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc
Q 004806 563 KIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 640 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e 640 (729)
.-.-...+..+++=+... ..+++......|-.+..++.....+-. ++|.|-..| +....++-.++..|..+-....
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra 334 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA 334 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHHhhhh
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-------hhHHHHHhCC--CHHHHHHhhhCCCHHHHHHH
Q 004806 641 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-------RFCSMVLQEG--AVPPLVALSQSGTPRAKEKA 711 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-------~~~~~vl~~G--~v~~Lv~Ll~sg~~rvr~~A 711 (729)
.+---+-. ...++..|...+..+...-+..|.+.|.-.. ..|..+++.+ +.-..++++..-+.-...++
T Consensus 335 ~~f~~I~~--~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~~l~~~~~~~~~~~ 412 (1005)
T KOG1949|consen 335 AKFWKICP--MDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRFYQYLHEHTATNIAKL 412 (1005)
T ss_pred hhhhcccc--HHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHHHHHhcccchhhHHHH
Q ss_pred HHHHHHhhcCcCcCCCCC
Q 004806 712 QALLSYFRNQRHGNAGRG 729 (729)
Q Consensus 712 ~~lL~~L~~~~~~~~~r~ 729 (729)
.-+++.|-++.-.+.+|+
T Consensus 413 ~hlI~~fln~~~~~~~~~ 430 (1005)
T KOG1949|consen 413 IHLIRHFLNACIQRAVRE 430 (1005)
T ss_pred HHHHHHHHHHHHHHHhcC
No 419
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=31.29 E-value=3.1e+02 Score=24.68 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHc------CCCHHHHHHHHHHHHHh
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNL 513 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~------s~d~~v~e~Al~aL~nL 513 (729)
...+..|.+.|.+.++.++..|+..|-.+.++. +.....+....++..++.+.. ..+..+++.+...+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 578889999999999999999999999998864 344555666666666655411 12677888887776544
No 420
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.01 E-value=1.5e+02 Score=35.53 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh------cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh
Q 004806 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 488 I~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~------~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
...++.+|.++.-.++-..+.++.|+..+-.....+++ +..+..|++-|.+..+-.|..|..++..+..- +-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl--~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDL--NS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC--cc
Confidence 45677888888888888889999999765332233333 23455566666677788888888776665421 11
Q ss_pred hhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 562 IKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 562 ~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
...+ +..++...+..|++.+.-+++.|...+..|..
T Consensus 379 k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 1111 12445666677888888888888888877754
No 421
>PRK12495 hypothetical protein; Provisional
Probab=30.96 E-value=63 Score=33.11 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.+-.|.|+.|+..+- .- .|...||.|...+..
T Consensus 39 tmsa~hC~~CG~PIp----a~---------------pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 39 TMTNAHCDECGDPIF----RH---------------DGQEFCPTCQQPVTE 70 (226)
T ss_pred ccchhhcccccCccc----CC---------------CCeeECCCCCCcccc
Confidence 456789999997432 11 233459999876653
No 422
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.86 E-value=43 Score=36.72 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhcC-CccHHHHHh
Q 004806 464 ATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSIN-DNNKSAIAN 525 (729)
Q Consensus 464 Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL--~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~ 525 (729)
..+.|..|++..++++..+.+.|+++++++-. .+.+|.+++-.+.++.+|..+ ..|+..|..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56688999999999999999999999988744 456899999999999999765 567766654
No 423
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=30.55 E-value=8e+02 Score=27.37 Aligned_cols=144 Identities=17% Similarity=0.103 Sum_probs=76.6
Q ss_pred ccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcHHH-HHHHHcCcHHHHHHhc----CCCHHHHHHHHHHHHHHhCCc
Q 004806 566 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENK-ARIVQAGAVKHLVDLM----DPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~en~-~~lv~~G~V~~Lv~LL----~~~~~v~e~Al~~L~nLa~~~ 639 (729)
+..-.+-+-.-+... ...-+.+|+..|..|+...+.. ..++ .+.|..++.-. ..+..-.+.|+.++..|+...
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 334344443333322 3445677888999987532211 1111 22333333311 234567788999999998744
Q ss_pred ch-------------HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHH
Q 004806 640 DG-------------RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706 (729)
Q Consensus 640 e~-------------r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~r 706 (729)
.. ...+....++|.|. --.+..+-.+..|++.+...-..-+. +.+. +++|.|+..+++++.-
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYV 361 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcc
Confidence 22 12222223333333 11135677888888888776665442 2222 3799999999999988
Q ss_pred HHHHHHHHH
Q 004806 707 AKEKAQALL 715 (729)
Q Consensus 707 vr~~A~~lL 715 (729)
|.--|+.++
T Consensus 362 v~tyAA~~i 370 (370)
T PF08506_consen 362 VHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhC
Confidence 887776543
No 424
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.39 E-value=46 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHH
Q 004806 157 ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196 (729)
Q Consensus 157 ~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l 196 (729)
.--+|||..|-+.-+. ..||.|+-.|......|--.|
T Consensus 26 tfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 26 TFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 3468999999987774 359999999988888886444
No 425
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.33 E-value=2.3e+02 Score=28.26 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
++..++.+++..-+.+..++..|+..|....+..--|- .-.+|.|+.|..++++.++..|...+..+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 35678888888889999999999999887766432111 247899999999999999999999998885
No 426
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=29.53 E-value=25 Score=27.08 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=22.2
Q ss_pred cCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 151 TDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 151 ~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.+-=.+ .+.|-.|..|+..-+..+ ..||+|+.+|+.+
T Consensus 11 ~~k~Li~C~dHYLCl~CLt~ml~~s-~~C~iC~~~LPtk 48 (50)
T PF03854_consen 11 ANKGLIKCSDHYLCLNCLTLMLSRS-DRCPICGKPLPTK 48 (50)
T ss_dssp --SSEEE-SS-EEEHHHHHHT-SSS-SEETTTTEE----
T ss_pred cCCCeeeecchhHHHHHHHHHhccc-cCCCcccCcCccc
Confidence 333344 456999999999988876 4599999998753
No 427
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.92 E-value=19 Score=37.94 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=34.7
Q ss_pred CCCCcccccCccccccC-------------ceec-CCCccccHHHHHH-HHhc----CCCCCCCCCccCCCC
Q 004806 136 PIPSDFCCPLSLELMTD-------------PVIV-ASGQTYERAFIKK-WIDL----GLFVCPKTRQTLAHT 188 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~d-------------PV~~-~~G~ty~r~~I~~-~~~~----~~~~cP~t~~~l~~~ 188 (729)
+-+.-|.|++|..++.- |..- -||.-|.|.++.+ +++. .+..||.|++.|.++
T Consensus 157 ~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 157 DSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 33677889999877542 3222 3677788776544 4442 345699999988764
No 428
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.84 E-value=4.1e+02 Score=32.45 Aligned_cols=156 Identities=12% Similarity=0.042 Sum_probs=96.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhC-CcchHHHHH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPDGRVAIG 646 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~-~~e~r~~i~ 646 (729)
.....+...+..++....+..+.++.+|+.-..-..+-.....-+.....=+.-..+++....+|..++. .++....++
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566677777778888888888888888652211100011111111111101112445677788888888 444455554
Q ss_pred -hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH--hhHHHHHhC-------CCHHHHHHhhhC----CCHHHHHHHH
Q 004806 647 -QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS--RFCSMVLQE-------GAVPPLVALSQS----GTPRAKEKAQ 712 (729)
Q Consensus 647 -~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~--~~~~~vl~~-------G~v~~Lv~Ll~s----g~~rvr~~A~ 712 (729)
+.++...++.++-++++...+.|..+|........ +..+.+++. |+...|..+... ..+++.+...
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~ 600 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLM 600 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 46788999999999999999999999999875442 333444443 333334444433 2478888888
Q ss_pred HHHHHhhcCcC
Q 004806 713 ALLSYFRNQRH 723 (729)
Q Consensus 713 ~lL~~L~~~~~ 723 (729)
.+|+.|..-..
T Consensus 601 DIi~~Lcdp~~ 611 (727)
T PF12726_consen 601 DIIEVLCDPVS 611 (727)
T ss_pred HHHHHHcCCCC
Confidence 89988877543
No 429
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=28 Score=38.30 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=43.6
Q ss_pred CCcccccCccccccCce----ecCCCccccHHHHHHH-HhcCCCCCCCCCccCCCCCCc----ccHHHHHHHHHH-HHHc
Q 004806 138 PSDFCCPLSLELMTDPV----IVASGQTYERAFIKKW-IDLGLFVCPKTRQTLAHTTLI----PNYTVKALIANW-CELN 207 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~-~~~~~~~cP~t~~~l~~~~l~----pN~~l~~~I~~~-~~~~ 207 (729)
-.+|+||+...+|.+=- +-.+|..||-.+|++- +...+-.+-++..|++..+++ ||..=+.-+..| --++
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQdP~~lek~~~~~F~hvk~ 178 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQDPNNLEKFNMSDFYHVKK 178 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeecCcchhhccchhhHHHHhc
Confidence 47899999999998753 2368999999999984 222222333333444333332 554334434444 3334
Q ss_pred CCCCC
Q 004806 208 NVKLP 212 (729)
Q Consensus 208 ~~~~~ 212 (729)
+....
T Consensus 179 ~lk~~ 183 (518)
T KOG0883|consen 179 NLKTA 183 (518)
T ss_pred ccccC
Confidence 44433
No 430
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=28.59 E-value=32 Score=26.34 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=18.3
Q ss_pred ceecCCCc-----cccHHHHHHHHhc-CCCCCCCC
Q 004806 153 PVIVASGQ-----TYERAFIKKWIDL-GLFVCPKT 181 (729)
Q Consensus 153 PV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t 181 (729)
|.+.||+- -.=+.|+++|+.. +..+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 68888753 3568999999975 44569886
No 431
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=28.40 E-value=37 Score=24.60 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=18.4
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
+|.||-|+..|.-...... .....||.|+..+
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~--------------~~~~~CP~Cg~~~ 36 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISD--------------DPLATCPECGGDV 36 (41)
T ss_pred EEEcCCCCCEEEEEEecCC--------------CCCCCCCCCCCcc
Confidence 5778777766553322211 1234699999854
No 432
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.32 E-value=3.9e+02 Score=25.41 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHH-HHHHHcC---CCHHHHHHHHHHHHHhh
Q 004806 443 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNM-DNRMVIANCGAINI-LVDMLHS---SETKIQENAVTALLNLS 514 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~-Lv~LL~s---~d~~v~e~Al~aL~nLs 514 (729)
+..++.|-+.|++ .++.++..|+..|-.+.+... .....|+..+++.- |+.++.. .+..|+...+..|...+
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 6788899999984 588899999999998888643 45566777899987 9999963 24578888888887775
No 433
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=28.24 E-value=58 Score=29.75 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHH
Q 004806 463 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504 (729)
Q Consensus 463 ~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e 504 (729)
..+..+..|+. .|+.-..+++.|+++.|+.||.+++.++..
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 46777888887 457788888999999999999998877543
No 434
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.10 E-value=2.7e+02 Score=25.08 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=50.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhh---hCC---CHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALS---QSG---TPRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll---~sg---~~rvr~~A~~lL~~L~ 719 (729)
++..|.+.|.+.++.++..|+.+|-.|+.+.+ .....+.....+..++.+. ..| ...+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46677778888899999999999999998875 4555666665555554431 112 4689999999887653
No 435
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=27.97 E-value=21 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=25.4
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccC--CCCCCcccH
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL--AHTTLIPNY 194 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l--~~~~l~pN~ 194 (729)
--|.|+||+.+|..++ ..||.|...+ +.....||.
T Consensus 272 iG~VCSVCLSVfC~~~---------------------PiC~~C~s~F~~t~~Pv~p~~ 308 (314)
T KOG2487|consen 272 IGFVCSVCLSVFCRFV---------------------PICKTCKSKFSFTKYPVKPNR 308 (314)
T ss_pred eeeehHHHHHHhhCCC---------------------CccchhhhhcccccCccchhh
Confidence 3478999999998885 4688888877 444555663
No 436
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.89 E-value=2.2e+02 Score=26.18 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC---------hhhHHHH----Hhc--CcHHHHHHHHcCCC----HHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN---------MDNRMVI----ANC--GAINILVDMLHSSE----TKIQ 503 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s---------~~nr~~I----~~~--GaI~~Lv~LL~s~d----~~v~ 503 (729)
...+..+++.++++ +......+..|+.+..+- ...|..+ .+. ..+..+...|.... .++.
T Consensus 25 p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 25 PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 45778888888763 444445555555444321 1112222 221 33444444454322 7788
Q ss_pred HHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHH
Q 004806 504 ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL 551 (729)
Q Consensus 504 e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL 551 (729)
..++.++..... --.-..+...+.++.++++|..+ +.+..|+.+|
T Consensus 104 ~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 104 KAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 888888877654 33455666778899999999544 3467777654
No 437
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=26.73 E-value=23 Score=34.38 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=20.0
Q ss_pred CcccccCccccccCceecCCCccccH
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYER 164 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r 164 (729)
++..||||.+---+-|+|-|. +|++
T Consensus 1 ed~~CpICme~PHNAVLLlCS-S~~k 25 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS-SHEK 25 (162)
T ss_pred CCccCceeccCCCceEEEEec-cccC
Confidence 467899999999999998764 3444
No 438
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.53 E-value=3.3e+02 Score=25.87 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=56.4
Q ss_pred cHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHH-HHHhhhC-C--CHHHHHHHHHHHHHhhcCcC
Q 004806 650 GIPVLVEVVEL-GSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPP-LVALSQS-G--TPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 650 ~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~-Lv~Ll~s-g--~~rvr~~A~~lL~~L~~~~~ 723 (729)
++..|.+.|.. .++.++..|+.+|-.+..+.+ .....|.....+.- |+.++.. . ...|+.+...++......-.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 46677777764 588899999999988888875 56677777788886 8999863 2 35899999998887766543
No 439
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=26.37 E-value=45 Score=36.15 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=35.5
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhc-CCCCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL-GLFVCPKTRQT 184 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~-~~~~cP~t~~~ 184 (729)
+.-.|-||-+=.+--.++||||..|-.|--+--.- ....||+|+..
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 45789999998888889999999999997653211 12459999865
No 440
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=26.36 E-value=8.9e+02 Score=26.55 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=115.0
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhc-----cCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGR-----SGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~-----~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.+..+|.+..|+..|.....+.+..++.+..++-..+- .+...++ ...+..|+.--.. .+++...+-..|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 45678999999999999999999888888777754221 1211111 1233333322111 233333333333333
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCC---c-HHHHHHHHccCCHHHHHHH
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN---G-IPVLVEVVELGSARGKENA 669 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g---~-I~~Lv~lL~s~s~~~ke~A 669 (729)
..++.-...+....-+......+ .+.-++...|..+...+.+ +.....++...+ . ...--.++++++--.+..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 33444444455566666666666 3566788888888887765 544445554433 2 3335566677888888888
Q ss_pred HHHHHHHhhCCHh---hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 670 AAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 670 ~~aL~nL~~~~~~---~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..+|..+--+.+. ..+.+.....+..+..+|+.....++-.|-.+-+.+..
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 8888877665432 22233333456667777777666666666555555543
No 441
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=26.22 E-value=1.1e+03 Score=28.53 Aligned_cols=194 Identities=15% Similarity=0.181 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+..+..|.+.+=+.+..-|..+.+.|..++..++. -++..+..+|.. .+++-...++..+..++. -
T Consensus 179 l~~~~~~Lc~~lL~~n~~r~~w~~rLL~lL~~~~Ps--------i~~~~~~~lL~~A~~~~~l~lli~L~~~~~~----~ 246 (696)
T PF14838_consen 179 LKAHITELCKELLSLNRKRQQWAHRLLCLLSSQHPS--------IAIEAISYLLTKAQNPEHLALLIRLYAGLSV----V 246 (696)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc--------hHHHHHHHHHHhcCCHHHHHHHHHHHhcccC----C
Confidence 455566666665555666677788888888754432 233444444433 344333333333333322 0
Q ss_pred HHHHhcCCHHHHHH-HhcC--CCHHHHHHHHHHHHHhcc----Ccc-------hhhhhhcc--CcHHHHHHhhcCCCHHH
Q 004806 521 SAIANANAIEPLIH-VLQT--GSPEARENAAATLFSLSV----IED-------NKIKIGRS--GAIGPLVDLLGNGTPRG 584 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~-lL~s--~~~e~r~~Aa~aL~nLS~----~~e-------~k~~I~~~--g~I~~Lv~LL~~~~~~v 584 (729)
....-.|+++..++ .+.. ...-....+..++.||.. ... ....+.+. .-++.+..+|.+++.++
T Consensus 247 ~~~~~~~l~~~vle~~l~~i~~~~lt~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~ 326 (696)
T PF14838_consen 247 NFPSLPGLFPAVLEQCLRQIHTNTLTPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEV 326 (696)
T ss_pred ccccccchHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 01111233333222 1111 011123455566666642 111 12223332 67788899998999999
Q ss_pred HHHHHHHHHhcccCcH---HHHHHH--HcCcHHHHHHhcC-C----CHHHHHHHHHHHHHHhCC-cchHHHHHh
Q 004806 585 KKDAATALFNLSIYHE---NKARIV--QAGAVKHLVDLMD-P----AAGMVDKAVAVLANLATI-PDGRVAIGQ 647 (729)
Q Consensus 585 ~~~Al~aL~nLs~~~e---n~~~lv--~~G~V~~Lv~LL~-~----~~~v~e~Al~~L~nLa~~-~e~r~~i~~ 647 (729)
...++..|..+..... .-..+. ..-.|..+...|. . .......+..+|..+|.. +.++.++.+
T Consensus 327 ~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr 400 (696)
T PF14838_consen 327 AHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLR 400 (696)
T ss_pred HHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 9999999988765332 111111 1223333333332 1 123456788899999986 566665543
No 442
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=25.59 E-value=76 Score=23.86 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=21.6
Q ss_pred ccCccccccCceecC---CCccccHHHHHHHHhcCCC-CCCCC
Q 004806 143 CPLSLELMTDPVIVA---SGQTYERAFIKKWIDLGLF-VCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV~~~---~G~ty~r~~I~~~~~~~~~-~cP~t 181 (729)
|-+|.++..-=+.=+ |+..+=..|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 445666555555533 7888999999999987543 59987
No 443
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.40 E-value=1.6e+02 Score=31.57 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC--------------hhhHHHHHhcCcHHHHHHHHc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN--------------MDNRMVIANCGAINILVDMLH 496 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s--------------~~nr~~I~~~GaI~~Lv~LL~ 496 (729)
....|..+++.|.+.+...+..|+++|.-++.+. ..|-..+.+.|+++.|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4678999999999999889999999999888753 234455677788888888874
No 444
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.91 E-value=2.1e+02 Score=33.06 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=57.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhCC-C-HHHHHHHHHHHHHhhcC
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG-T-PRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg-~-~rvr~~A~~lL~~L~~~ 721 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+. ....|.+.+++.-++.+.... . ..+|+++..+|..-...
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 577888888888889999999987777777664 445788889999999999887 3 68999998888765544
No 445
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.75 E-value=1.1e+02 Score=29.66 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=16.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 569 AIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 569 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
-|.+|+++|.+.+..+...|+.+|.+-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 3667777777777777777777777643
No 446
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=24.46 E-value=43 Score=27.63 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.1
Q ss_pred ccHHHHHHHHhc
Q 004806 162 YERAFIKKWIDL 173 (729)
Q Consensus 162 y~r~~I~~~~~~ 173 (729)
|||.|+.+|+..
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 447
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=1.4e+03 Score=28.12 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=66.7
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhh
Q 004806 484 NCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 563 (729)
Q Consensus 484 ~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~ 563 (729)
+.=.++.++..+++.-.-++..|+..+..++.+= +....-..+.+.....|++.+..++..|+-+|.-+-.+.+....
T Consensus 458 e~fiv~hv~P~f~s~ygfL~Srace~is~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 458 EYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHH
Confidence 3345667777888888889999999998886541 11112223455666777777788888898888877666555444
Q ss_pred hhcc--CcHHHHHHhhcCCCHHHHHHHHH
Q 004806 564 IGRS--GAIGPLVDLLGNGTPRGKKDAAT 590 (729)
Q Consensus 564 I~~~--g~I~~Lv~LL~~~~~~v~~~Al~ 590 (729)
+.+. +.+..|+.|-+.-+.+.....+.
T Consensus 536 ~sahVp~tmekLLsLSn~feiD~LS~vMe 564 (970)
T COG5656 536 FSAHVPETMEKLLSLSNTFEIDPLSMVME 564 (970)
T ss_pred HHhhhhHHHHHHHHhcccccchHHHHHHH
Confidence 4432 55555555555544444444443
No 448
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.16 E-value=1.1e+03 Score=26.85 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCCCccCCC-CCCcccHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAH-TTLIPNYTVK 197 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~-~~l~pN~~l~ 197 (729)
-+..|.||+|+. +|.---+.+-+.. +...|-+|+-.|-. ..-.|+...+
T Consensus 125 ~~~~Y~Cp~C~k------------kyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~ 176 (436)
T KOG2593|consen 125 NVAGYVCPNCQK------------KYTSLEALQLLDNETGEFHCENCGGELVEDENKLPSKESR 176 (436)
T ss_pred ccccccCCcccc------------chhhhHHHHhhcccCceEEEecCCCchhcccccCchHHHH
Confidence 478999999887 4555455555553 44569999988754 3455654433
No 449
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.12 E-value=1.6e+02 Score=37.88 Aligned_cols=163 Identities=14% Similarity=0.116 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----CC---CHHHHHHHHHHHHhcccCc-HHHHHHHHcC
Q 004806 538 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NG---TPRGKKDAATALFNLSIYH-ENKARIVQAG 609 (729)
Q Consensus 538 s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----~~---~~~v~~~Al~aL~nLs~~~-en~~~lv~~G 609 (729)
....+++.....+|.++-........- | .+.+.++++ .+ ...+.+.+..+|.-++.+- ..-..=+-.+
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~---~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLH---G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhcc---c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 445677777888888775432222111 2 333444433 22 3345555555666555421 1111112245
Q ss_pred cHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHH-----HhhC
Q 004806 610 AVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQ-----LCTN 679 (729)
Q Consensus 610 ~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~n-----L~~~ 679 (729)
+|+.++.+. ..+..+---|++.+|++...-.. +....+.+.-...++.+.+ .+..+-.+++|++.- +|.+
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 666666665 35556667788999988763333 3333333333444444433 456666677776533 3333
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHH
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAK 708 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr 708 (729)
+ ..-++.|+++.|.+++.+......
T Consensus 1009 s----r~eVRngAvqtlfri~~Shg~~l~ 1033 (1610)
T KOG1848|consen 1009 S----RAEVRNGAVQTLFRIFNSHGSKLG 1033 (1610)
T ss_pred c----hHHHhhhHHHHHHHHHhhhcccCC
Confidence 2 334567899999999988764443
No 450
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=24.10 E-value=5.2e+02 Score=29.92 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=67.9
Q ss_pred cCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHH----HhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCH-
Q 004806 608 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAI----GQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSS- 681 (729)
Q Consensus 608 ~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i----~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~- 681 (729)
.+.|..+++.++ ...+.+..+.++. +...+.+..+ .+.+.|+.|+.+|. +.+...+.+|+.+|..+..-+.
T Consensus 20 ~~~v~~llkHI~-~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 20 PNFVDNLLKHID-TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred ccHHHHHHHhcC-CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 566777777764 2344444444444 2333444443 45789999999996 4578899999988877754321
Q ss_pred ------------hhHHHHHhCCCHHHHHHhhh--CCCHHHHHHHHHHHHHhhcC
Q 004806 682 ------------RFCSMVLQEGAVPPLVALSQ--SGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 682 ------------~~~~~vl~~G~v~~Lv~Ll~--sg~~rvr~~A~~lL~~L~~~ 721 (729)
.....+..+..|..|+..+- .+...+.....-++.++|+.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 23344555667888888776 33344444444466776553
No 451
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.99 E-value=8.2e+02 Score=25.32 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=75.6
Q ss_pred HHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-------------C-----HHHHHHHHHHHHhcccCcHHHHHHHH
Q 004806 546 NAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-------------T-----PRGKKDAATALFNLSIYHENKARIVQ 607 (729)
Q Consensus 546 ~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-------------~-----~~v~~~Al~aL~nLs~~~en~~~lv~ 607 (729)
.++..+..|...++....+...+.++.+.+.|..- + ......-...|+-|+.++.+...+-+
T Consensus 83 vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~ 162 (226)
T PF14666_consen 83 VGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLLER 162 (226)
T ss_pred HHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHHHHHH
Confidence 33444455555555544555556666666655421 0 12233445577888888888888888
Q ss_pred cCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 608 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 608 ~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
.|.+..+..+++.... .+...-+|.+|-...++. .=..|-+.|.+++..++..|...|..+.+
T Consensus 163 ~~if~~l~~i~~~~~~-~~l~klil~~LDY~~~~~-------~R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 163 WNIFTMLYHIFSLSSR-DDLLKLILSSLDYSVDGH-------PRIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred CCHHHHHHHHHccCch-HHHHHHHHhhCCCCCccH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 9999999999853221 223333555654332221 12244556778899999999998887653
No 452
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.46 E-value=8.3e+02 Score=27.25 Aligned_cols=129 Identities=18% Similarity=0.117 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH---cCCCHHHHHHHHHHHHHhhcCCcc-------------HHH
Q 004806 459 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDML---HSSETKIQENAVTALLNLSINDNN-------------KSA 522 (729)
Q Consensus 459 evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL---~s~d~~v~e~Al~aL~nLs~~~~~-------------k~~ 522 (729)
.-+..|+..|+.|++.-...-..+. .+.|..++.-. .+.+..-+..|+..+..|+..... -..
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 3456788888888874221111111 12333333211 134677888999999888753211 122
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
+...-++|-|. --.+..+-++..|+..+...-.. -.+..+ .++++.++..|.+++.-+...|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22223333332 11123455676666665544321 112222 36899999999999998988888775
No 453
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.32 E-value=2.4e+02 Score=31.56 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=59.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhh-CCCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~-sg~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|...++-+...|+..|-.+..+.+ ..+..|-.......|..|+. +..++|+++-..+++....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999988875 46677777788888999998 5678999988887776654
No 454
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.05 E-value=5.7e+02 Score=26.92 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHcCcHHHHHHhcCCCHH---------HHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHH
Q 004806 606 VQAGAVKHLVDLMDPAAG---------MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALL 674 (729)
Q Consensus 606 v~~G~V~~Lv~LL~~~~~---------v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~ 674 (729)
.+..+.+.|+++++.+.. +.+..-.+|+.++ .|-+..|.+++.+. +.-++-.|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 446688899999842222 2233333444433 35577788888664 4567888888888
Q ss_pred HHhhCCHhhHHHHHh
Q 004806 675 QLCTNSSRFCSMVLQ 689 (729)
Q Consensus 675 nL~~~~~~~~~~vl~ 689 (729)
.+....+..++.+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 888888766666655
No 455
>PHA03096 p28-like protein; Provisional
Probab=22.88 E-value=51 Score=35.39 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=29.9
Q ss_pred ccccCccccc-cCce-------ecCCCccccHHHHHHHHhcCC--CCCCCCCcc
Q 004806 141 FCCPLSLELM-TDPV-------IVASGQTYERAFIKKWIDLGL--FVCPKTRQT 184 (729)
Q Consensus 141 f~CpI~~~lm-~dPV-------~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~~ 184 (729)
-.|-||.+.- .-|+ +..|-|+||-.||..|-.... .+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 4599998643 2332 235899999999999987542 346666554
No 456
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.87 E-value=50 Score=26.26 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=7.4
Q ss_pred CCCCCCCCcc
Q 004806 175 LFVCPKTRQT 184 (729)
Q Consensus 175 ~~~cP~t~~~ 184 (729)
+-.||.|++.
T Consensus 28 PlyCpKCK~E 37 (55)
T PF14205_consen 28 PLYCPKCKQE 37 (55)
T ss_pred cccCCCCCce
Confidence 3469999875
No 457
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=22.84 E-value=51 Score=28.96 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=19.5
Q ss_pred eecCCCccccHHHHHHHHhcCCCCCCCC
Q 004806 154 VIVASGQTYERAFIKKWIDLGLFVCPKT 181 (729)
Q Consensus 154 V~~~~G~ty~r~~I~~~~~~~~~~cP~t 181 (729)
|++|.|+.||+..|.+-++. .||+-
T Consensus 10 VtIp~G~KYdK~wLl~~iq~---~c~v~ 34 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS---HCSVP 34 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH---HSSS-
T ss_pred EEecCCcccCHHHHHHHHHH---HCCCC
Confidence 78999999999999999876 27543
No 458
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=17 Score=37.82 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=53.7
Q ss_pred CCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHH
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 199 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~ 199 (729)
....+|..|.|.|. .+|+.=.+.|+|-+|.+.-+.-|++..+ ..|+|-.+..-.+|+||...+..
T Consensus 18 nk~f~~k~y~~ai~-~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 18 NKCFIPKRYDDAID-CYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred ccccchhhhchHHH-HHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHH
Confidence 35668999999999 9999988999999999999999999653 47777666677799999766543
No 459
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=22.64 E-value=4.2e+02 Score=28.89 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHcC--cHHHHHHhcCC----CHHHHHHHHHHHHHHhCCcchHHHH
Q 004806 584 GKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLMDP----AAGMVDKAVAVLANLATIPDGRVAI 645 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~en~~~lv~~G--~V~~Lv~LL~~----~~~v~e~Al~~L~nLa~~~e~r~~i 645 (729)
++-.|+.+|..+........++...+ .+.-|++++.. ...++..|+.+|..|+........|
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 44556666666666777788888877 99999999942 3567888999999998855443333
No 460
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.50 E-value=4.7e+02 Score=35.46 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCCccHHH----HHhcCCHHHH
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILVDML----HSSETKIQENAVTALLNLSINDNNKSA----IANANAIEPL 532 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL----~s~d~~v~e~Al~aL~nLs~~~~~k~~----I~~~g~I~~L 532 (729)
+..++..|..++..|. +|..+.-......|...+ .+.+..+...|+..|..|+..--.+.. -.....+.++
T Consensus 1109 r~FsLqKLveIa~~Nm-~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNM-NRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcc-cchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 5667888888888775 576665556555555533 234667888888888888752111111 1234578888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----CCCHHHHHHHHHHHHhcccCcHHHHHHHH
Q 004806 533 IHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NGTPRGKKDAATALFNLSIYHENKARIVQ 607 (729)
Q Consensus 533 v~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----~~~~~v~~~Al~aL~nLs~~~en~~~lv~ 607 (729)
..++.. .+.++++..+.++.+|...... .| . .+++.+..+|. ...+.+...|..++..+....- ..+..
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-k-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f--~~l~~ 1261 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-K-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF--PYITE 1261 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-h-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh--hhccc
Confidence 887764 4589999999999987542211 12 1 24566655554 4467777777777776543211 11111
Q ss_pred --cC----cHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 004806 608 --AG----AVKHLVDLMD--PAAGMVDKAVAVLANL 635 (729)
Q Consensus 608 --~G----~V~~Lv~LL~--~~~~v~e~Al~~L~nL 635 (729)
.+ +|..|.++.. .+..+--.|+..|+++
T Consensus 1262 ~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1262 TETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 22 3444444442 2344555667777755
No 461
>PHA00733 hypothetical protein
Probab=22.40 E-value=1.2e+02 Score=28.49 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=32.5
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHh--cCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWID--LGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~--~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
..|.|+.|+..|..+.. +..|.. .....|+.|++.+.... .+....++.|+|-
T Consensus 72 kPy~C~~Cgk~Fss~s~-----------L~~H~r~h~~~~~C~~CgK~F~~~~--------sL~~H~~~~h~~~ 126 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVS-----------LKQHIRYTEHSKVCPVCGKEFRNTD--------STLDHVCKKHNIC 126 (128)
T ss_pred CCccCCCCCCcCCCHHH-----------HHHHHhcCCcCccCCCCCCccCCHH--------HHHHHHHHhcCcc
Confidence 35889998776665543 344444 23467999988665422 2335567777663
No 462
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.36 E-value=25 Score=27.61 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=6.1
Q ss_pred CCCCCCccCCCC
Q 004806 177 VCPKTRQTLAHT 188 (729)
Q Consensus 177 ~cP~t~~~l~~~ 188 (729)
.||+|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999877653
No 463
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=22.34 E-value=43 Score=30.04 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=17.1
Q ss_pred cCCCccccHHHHHHHHhcCCCCCCCCCcc
Q 004806 156 VASGQTYERAFIKKWIDLGLFVCPKTRQT 184 (729)
Q Consensus 156 ~~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 184 (729)
+.||+.|+.. ..-+.+| ||.|+-.
T Consensus 6 trCG~vf~~g--~~~il~G---Cp~CG~n 29 (112)
T COG3364 6 TRCGEVFDDG--SEEILSG---CPKCGCN 29 (112)
T ss_pred cccccccccc--cHHHHcc---Cccccch
Confidence 5699999886 3344444 9999865
No 464
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.21 E-value=8e+02 Score=24.53 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=65.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH--c---C-----------cH----HHHHHhc--CCCHHHHHHHH
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--A---G-----------AV----KHLVDLM--DPAAGMVDKAV 629 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~--~---G-----------~V----~~Lv~LL--~~~~~v~e~Al 629 (729)
.+.-++.+++++++..|+.+|..|-.....--...+ . + .+ ..|+..| +.+..+....+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334456788999999999999988654322111111 0 0 11 2233334 34566777889
Q ss_pred HHHHHHhCCcch-HHHHHhCCc----HHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 630 AVLANLATIPDG-RVAIGQENG----IPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 630 ~~L~nLa~~~e~-r~~i~~~g~----I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
.+|+.|...... |- ..|. +..+..++.+.+..++..+..++..+....
T Consensus 124 K~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 124 KCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 999988874433 32 2233 455555667788888888888887776543
No 465
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.08 E-value=85 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHH
Q 004806 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706 (729)
Q Consensus 651 I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~r 706 (729)
|..|+.+|.+.++.....|+.+|.+...-. ..+..+..+.+. +..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy----------Daf~dv~~~ak~-N~~ 140 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLVY----------DAFNDVAELAKA-NAY 140 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TTC----------CHHHHHHHHHHT--HH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHHH----------hhHHHHHHHHHc-CHH
Confidence 888888888777888888888886533222 235556666655 443
No 466
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.63 E-value=46 Score=38.12 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 437 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 437 ~~l~~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
+.+++....+...+..+-..+.--|..-...+..... ++.|+..++.. .+|..++....++ ..+.+.++.++..++.
T Consensus 198 s~fg~S~~~lSn~~~~~Fk~~~~~~~~~~~~fv~k~e-~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVek~~~~~~s~~~ 275 (763)
T KOG4231|consen 198 SYFGASRHKLSNFSPLIFKSSSCHHPLLASTFVKKME-DEGNRSVIGKDENAIRQLISMIESD-QHVVEKACVALSSLAR 275 (763)
T ss_pred ccccchhhhhhccchHhhccccccchhHHHHHHHHhh-Ccccceeecccchhhhhhccccccc-chhhcccccccccHHH
Q ss_pred CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 516 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 516 ~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
......+.+....+.+--.+++...+.+....-.+...-...+..............+-.+....++++++.|..++.|+
T Consensus 276 ~~~~t~ql~k~~l~~pTe~v~~l~~~~I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~ 355 (763)
T KOG4231|consen 276 DVGVTMQLMKCDLMKPTETVLKLSSPDIISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNL 355 (763)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhccccHhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Q ss_pred ccCcHHHHHHHH-cCcHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 004806 596 SIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANL 635 (729)
Q Consensus 596 s~~~en~~~lv~-~G~V~~Lv~LL-~~~~~v~e~Al~~L~nL 635 (729)
+.+.++|..... ..+-..+++++ .+...+-+.+..+|+.+
T Consensus 356 ~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 356 AFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAIL 397 (763)
T ss_pred eecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHh
No 467
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=21.47 E-value=2.2e+03 Score=29.42 Aligned_cols=265 Identities=13% Similarity=0.023 Sum_probs=130.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHH---HHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRM---VIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~---~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
+++.--+.+..+...|+..|+.++..-.+... .=.+..++.++..++. +.+.++++..+.++.++..... .-+
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI 1218 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV 1218 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh
Confidence 44433344667778888888888764321111 1112356677766665 4578899999999988853211 111
Q ss_pred hcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhh----cCC-CHHHHHHHHHHHH
Q 004806 525 NANAIEPLIHVLQ----TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLL----GNG-TPRGKKDAATALF 593 (729)
Q Consensus 525 ~~g~I~~Lv~lL~----s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL----~~~-~~~v~~~Al~aL~ 593 (729)
.. |-+.+..+|. ..++.+...|..++..+... .-..+.. .+.+..+|..| +.. +..+-..|+..|+
T Consensus 1219 kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d--~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1219 KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE--YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh--hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence 22 4455555554 34566666777666654321 1111111 23333444433 322 3444455555555
Q ss_pred hcccC----c------------------------HHHHHH-----HHcCcHHHHHHh---c-CCCHHHHHHHHHHHHHHh
Q 004806 594 NLSIY----H------------------------ENKARI-----VQAGAVKHLVDL---M-DPAAGMVDKAVAVLANLA 636 (729)
Q Consensus 594 nLs~~----~------------------------en~~~l-----v~~G~V~~Lv~L---L-~~~~~v~e~Al~~L~nLa 636 (729)
+++.. . +.-..+ ....-++.|..| . ++..+++..|+.+|-.+-
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 44210 0 000000 012234444443 2 567788888888776654
Q ss_pred CC------cchHHHHHhCCcHHHHHHHHccC-----------------------CHHHHHHHHHHHHHHhhCCHhhHHHH
Q 004806 637 TI------PDGRVAIGQENGIPVLVEVVELG-----------------------SARGKENAAAALLQLCTNSSRFCSMV 687 (729)
Q Consensus 637 ~~------~e~r~~i~~~g~I~~Lv~lL~s~-----------------------s~~~ke~A~~aL~nL~~~~~~~~~~v 687 (729)
.. ++.-..++. +++-.++..++.. +....+-+..+|.+++.--..+-..+
T Consensus 1376 ~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076 1376 RNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred HHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 112222332 3444444444311 01134455555655554333222222
Q ss_pred Hh--CCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 688 LQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 688 l~--~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
-. .+.+..|...+...+..+.+.+..+|..|-.
T Consensus 1455 ~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1455 NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 11 2345556666666777777777777777644
No 468
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=21.34 E-value=44 Score=31.48 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=17.3
Q ss_pred cCCCccccHHHHHHHHhcCCCCCCCCCcc
Q 004806 156 VASGQTYERAFIKKWIDLGLFVCPKTRQT 184 (729)
Q Consensus 156 ~~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 184 (729)
+.||++|+-...+ +..| ||.||-.
T Consensus 5 t~Cg~~f~dgs~e--il~G---CP~CGg~ 28 (131)
T PF09845_consen 5 TKCGRVFEDGSKE--ILSG---CPECGGN 28 (131)
T ss_pred CcCCCCcCCCcHH--HHcc---CcccCCc
Confidence 4689999876654 5544 9999854
No 469
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=21.28 E-value=30 Score=21.61 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=7.7
Q ss_pred ccccCccccccCc
Q 004806 141 FCCPLSLELMTDP 153 (729)
Q Consensus 141 f~CpI~~~lm~dP 153 (729)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4566666666554
No 470
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.21 E-value=7.1e+02 Score=30.53 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc---------------
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS--------------- 596 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs--------------- 596 (729)
|..++++|+..-+..|+.+|. ....|-....+..|+.++.....+-...|+.+|..|-
T Consensus 201 l~siiSsGT~~DkitA~~Llv-------qesPvh~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~q 273 (988)
T KOG2038|consen 201 LYSIISSGTLTDKITAMTLLV-------QESPVHNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQ 273 (988)
T ss_pred HHHHHhcCcchhhhHHHHHhh-------cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhh
Q ss_pred ------------------cCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHH
Q 004806 597 ------------------IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV 657 (729)
Q Consensus 597 ------------------~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~l 657 (729)
-+-+..-+..-...|.+|..+- ++=..+...++.++..|..+..-++..+ +..||..
T Consensus 274 rp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L----L~~lVNK 349 (988)
T KOG2038|consen 274 RPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL----LVLLVNK 349 (988)
T ss_pred ChhhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH----HHHHHHh
Q ss_pred HccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 004806 658 VELGSARGKENAAAALLQLCTNSSRFCSMVLQE 690 (729)
Q Consensus 658 L~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~ 690 (729)
|-.....+...|...|.+|.+..|..+..|+.+
T Consensus 350 lGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~E 382 (988)
T KOG2038|consen 350 LGDPQNKIASKASYLLEGLLAKHPNMKIVVIDE 382 (988)
T ss_pred cCCcchhhhhhHHHHHHHHHhhCCcceeehHHH
No 471
>PRK05978 hypothetical protein; Provisional
Probab=21.05 E-value=55 Score=31.62 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=21.5
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
-+||-|++ |+-|. .|++-. ..||.|++.+.+.
T Consensus 34 grCP~CG~----------G~LF~-----g~Lkv~-~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLKPV-DHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Ccccc-----cccccC-CCccccCCccccC
Confidence 36888885 44443 455543 5699999988764
No 472
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=21.02 E-value=3.5e+02 Score=27.16 Aligned_cols=97 Identities=11% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHcCcHHHHHHhc----CCC---------------HHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCC
Q 004806 603 ARIVQAGAVKHLVDLM----DPA---------------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGS 662 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL----~~~---------------~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s 662 (729)
.-+...|++..++++| ... ..+...+..+|..+|. +.+++..+.+. ++.++..+....
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh
Confidence 3345688888888887 222 3566788899999998 44555555543 333333333222
Q ss_pred HHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC
Q 004806 663 ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 663 ~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
-..--.+..+|..+-.++.+.+..+.+.. +..++.++..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp H-TTHHHHHHHHHHHTT-----------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 12223456677777777776666655443 6677776665
No 473
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.90 E-value=56 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=10.5
Q ss_pred CCCCCCCCCccCCCC
Q 004806 174 GLFVCPKTRQTLAHT 188 (729)
Q Consensus 174 ~~~~cP~t~~~l~~~ 188 (729)
.+-+||+|+..+...
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 344699998877665
No 474
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.71 E-value=90 Score=33.58 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=33.8
Q ss_pred CCcccccCccccc--------------cCce-----ecCCCccccHHHHHHHHhc----C----CCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELM--------------TDPV-----IVASGQTYERAFIKKWIDL----G----LFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm--------------~dPV-----~~~~G~ty~r~~I~~~~~~----~----~~~cP~t~~~l~~~ 188 (729)
+.+-.||+|+.+= -|+= ..||||........=|-+- | +..||+|.+.|..+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 5577899998752 1211 2489998777776666542 2 23599999888654
No 475
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.65 E-value=4.8e+02 Score=24.88 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=25.8
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.....-..+..+|.+++.++++.|+.||...
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3345667788999999999999999999874
No 476
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.60 E-value=62 Score=34.62 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=8.9
Q ss_pred cccccCccccccCc
Q 004806 140 DFCCPLSLELMTDP 153 (729)
Q Consensus 140 ~f~CpI~~~lm~dP 153 (729)
-|.||+|+-+|.++
T Consensus 255 GyvCs~Clsi~C~~ 268 (279)
T TIGR00627 255 GFVCSVCLSVLCQY 268 (279)
T ss_pred eEECCCccCCcCCC
Confidence 36677777766554
No 477
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=3.9e+02 Score=22.96 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred hHHHHHHHhhhcchh--hHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 004806 30 SLELCSQKIKHMEYE--QTSSLIKEAIRDQVDGVAPSSEILVKVAE 73 (729)
Q Consensus 30 ~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 73 (729)
.|.++++.++.+..| .|++-|+++..+.+ |.+++...++.|..
T Consensus 15 QLrafIerIERlEeEk~~i~~dikdvy~eak-g~GFDvKa~r~iir 59 (85)
T COG3750 15 QLRAFIERIERLEEEKKTIADDIKDVYAEAK-GHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccHHHHHHHHH
Confidence 688999999999987 78999999999854 68888877776543
No 478
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.39 E-value=77 Score=28.94 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=33.1
Q ss_pred HHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHH
Q 004806 546 NAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 586 (729)
Q Consensus 546 ~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~ 586 (729)
.....|..|+..++.-..+++.|+++.|+.||.+.+..+..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 44566777888888878888899999999999998876544
No 479
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.35 E-value=1e+02 Score=38.49 Aligned_cols=66 Identities=12% Similarity=-0.087 Sum_probs=39.6
Q ss_pred cccccCccccccCceec-C-CCc-----cccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 140 DFCCPLSLELMTDPVIV-A-SGQ-----TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~-~G~-----ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
...||=|+... +... | ||. -||..| .+.. +...||.|+..+....- -...++.....-.+.-|+..
T Consensus 626 ~RfCpsCG~~t--~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~~s~-~~i~l~~~~~~A~~~lg~~~ 698 (1121)
T PRK04023 626 RRKCPSCGKET--FYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTPYSK-RKIDLKELYDRALENLGERK 698 (1121)
T ss_pred CccCCCCCCcC--CcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCccce-EEecHHHHHHHHHHHhCCcC
Confidence 46788888775 2222 2 774 488888 2222 23569999988765332 23446666666666655543
No 480
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=70 Score=36.59 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCcccccCccccccC-ceecCCCccccHHHHHHHHhc
Q 004806 138 PSDFCCPLSLELMTD-PVIVASGQTYERAFIKKWIDL 173 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-PV~~~~G~ty~r~~I~~~~~~ 173 (729)
..+..|.||.+-..+ .+.+.|||-||..|+..|+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456899999998875 666799999999999999875
No 481
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.04 E-value=2.8e+02 Score=31.95 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh-HHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN-RMVIANCGAINILVDMLHSS--ETKIQENAVTALLNL 513 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~n-r~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nL 513 (729)
+..|..|.+.|.+.++.+|..|+..|-.+.+..... ...|++.+++.-+|.+.+.. +..|++.++..|..-
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 578899999999888899999999888787764443 34788889999999888654 778999988888544
Done!