Query 004806
Match_columns 729
No_of_seqs 527 out of 2842
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 3.7E-29 1.3E-33 272.5 26.1 264 459-723 47-337 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 3E-29 1E-33 282.4 24.6 278 445-723 3-363 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 1.2E-28 4E-33 283.0 26.9 279 444-723 48-387 (584)
4 3nmz_A APC variant protein; pr 100.0 1.6E-28 5.6E-33 275.5 26.1 260 462-722 166-452 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 8.2E-27 2.8E-31 262.5 27.5 281 443-725 43-454 (457)
6 3ul1_B Importin subunit alpha- 100.0 1.4E-26 4.9E-31 264.0 28.3 278 443-720 99-387 (510)
7 3tpo_A Importin subunit alpha- 99.9 3.8E-26 1.3E-30 261.5 30.7 278 443-720 118-406 (529)
8 3now_A UNC-45 protein, SD10334 99.9 1.7E-26 5.9E-31 273.3 28.6 280 441-720 418-737 (810)
9 3nmz_A APC variant protein; pr 99.9 1.3E-26 4.3E-31 260.2 23.1 278 443-720 69-408 (458)
10 3now_A UNC-45 protein, SD10334 99.9 4.1E-26 1.4E-30 270.1 28.2 279 443-722 494-784 (810)
11 3l6x_A Catenin delta-1; cateni 99.9 7.2E-26 2.5E-30 259.9 28.3 278 443-722 89-478 (584)
12 3nmw_A APC variant protein; AR 99.9 2.6E-26 9E-31 250.0 21.7 240 443-682 72-338 (354)
13 4b8j_A Importin subunit alpha- 99.9 1.2E-24 4.2E-29 247.8 32.2 279 443-721 116-401 (528)
14 4hxt_A De novo protein OR329; 99.9 2.2E-24 7.6E-29 219.6 27.9 240 486-725 2-246 (252)
15 4hxt_A De novo protein OR329; 99.9 1.9E-24 6.6E-29 220.1 26.5 237 445-681 3-244 (252)
16 3tpo_A Importin subunit alpha- 99.9 2.9E-24 9.8E-29 245.9 31.1 278 443-720 161-449 (529)
17 3ul1_B Importin subunit alpha- 99.9 3.6E-24 1.2E-28 244.2 29.7 278 443-720 142-430 (510)
18 1wa5_B Importin alpha subunit; 99.9 7.3E-24 2.5E-28 241.9 32.2 279 443-721 129-413 (530)
19 4b8j_A Importin subunit alpha- 99.9 5.4E-24 1.9E-28 242.5 30.2 277 444-720 74-358 (528)
20 4db8_A Armadillo-repeat protei 99.9 2E-24 6.9E-29 221.4 22.3 235 445-679 13-252 (252)
21 2jdq_A Importin alpha-1 subuni 99.9 3.2E-23 1.1E-27 229.5 33.1 276 444-720 64-347 (450)
22 4db8_A Armadillo-repeat protei 99.9 9.8E-24 3.4E-28 216.2 23.1 235 486-720 12-251 (252)
23 2jdq_A Importin alpha-1 subuni 99.9 8E-23 2.7E-27 226.3 31.1 277 443-720 106-390 (450)
24 1wa5_B Importin alpha subunit; 99.9 1.3E-22 4.4E-27 231.5 31.8 278 443-720 172-457 (530)
25 1jdh_A Beta-catenin; beta-cate 99.9 3.6E-22 1.2E-26 226.0 28.4 278 443-721 16-340 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 6.5E-22 2.2E-26 223.9 29.6 278 443-721 58-386 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 5.7E-22 1.9E-26 232.0 27.8 277 443-720 13-336 (644)
28 3tt9_A Plakophilin-2; cell adh 99.9 1.8E-22 6.2E-27 206.7 18.3 195 443-638 7-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 2.8E-21 9.5E-26 226.2 30.3 278 443-721 55-383 (644)
30 2z6g_A B-catenin; FULL-length, 99.9 1.8E-20 6.1E-25 224.3 29.7 277 443-720 149-472 (780)
31 2f42_A STIP1 homology and U-bo 99.9 1.5E-22 5.1E-27 197.7 9.4 96 107-211 82-177 (179)
32 4db6_A Armadillo repeat protei 99.9 1.7E-20 5.7E-25 187.0 22.3 196 443-638 11-210 (210)
33 3opb_A SWI5-dependent HO expre 99.9 2E-20 6.7E-25 218.1 25.6 280 442-721 374-729 (778)
34 3tt9_A Plakophilin-2; cell adh 99.9 2.7E-21 9.2E-26 198.0 15.9 192 487-679 9-230 (233)
35 2z6g_A B-catenin; FULL-length, 99.9 2.8E-20 9.4E-25 222.6 26.8 271 444-722 115-391 (780)
36 4db6_A Armadillo repeat protei 99.9 3.5E-20 1.2E-24 184.6 23.1 196 525-720 10-209 (210)
37 1wgm_A Ubiquitin conjugation f 99.8 1.2E-21 4.1E-26 173.8 8.2 77 133-210 15-92 (98)
38 2kr4_A Ubiquitin conjugation f 99.8 6.1E-22 2.1E-26 171.2 6.1 76 133-209 7-82 (85)
39 2kre_A Ubiquitin conjugation f 99.8 1.2E-21 4.2E-26 174.4 7.0 75 133-208 22-96 (100)
40 3opb_A SWI5-dependent HO expre 99.8 1.4E-18 4.7E-23 202.7 22.5 276 442-719 332-682 (778)
41 3m62_A Ubiquitin conjugation f 99.8 1.1E-19 3.7E-24 213.8 12.0 129 50-209 827-960 (968)
42 1t1h_A Gspef-atpub14, armadill 99.8 8.6E-20 2.9E-24 154.8 6.6 76 135-210 3-78 (78)
43 1xqr_A HSPBP1 protein; armadil 99.8 9.3E-18 3.2E-22 178.2 22.0 222 500-721 54-288 (296)
44 2c2l_A CHIP, carboxy terminus 99.8 3.3E-19 1.1E-23 187.1 10.0 80 132-211 200-279 (281)
45 1xqr_A HSPBP1 protein; armadil 99.8 1.7E-17 6E-22 176.1 20.3 182 540-721 53-239 (296)
46 2yu4_A E3 SUMO-protein ligase 99.7 9.6E-19 3.3E-23 154.1 6.1 74 137-210 4-86 (94)
47 3ztg_A E3 ubiquitin-protein li 99.6 7.3E-16 2.5E-20 134.7 8.2 77 134-210 7-86 (92)
48 2bay_A PRE-mRNA splicing facto 99.6 2.8E-16 9.6E-21 126.7 2.6 54 140-194 3-57 (61)
49 3fl2_A E3 ubiquitin-protein li 99.5 9.3E-15 3.2E-19 135.0 5.5 70 137-206 49-119 (124)
50 3htk_C E3 SUMO-protein ligase 99.5 2.3E-14 7.9E-19 146.2 6.7 70 137-206 178-251 (267)
51 3grl_A General vesicular trans 99.5 4.2E-12 1.4E-16 144.9 24.4 272 443-718 20-340 (651)
52 1z6u_A NP95-like ring finger p 99.5 2.7E-14 9.3E-19 136.4 5.4 69 137-205 75-144 (150)
53 2y43_A E3 ubiquitin-protein li 99.4 9.3E-14 3.2E-18 123.1 4.2 70 137-207 19-89 (99)
54 3grl_A General vesicular trans 99.4 5.7E-11 1.9E-15 135.7 25.0 277 443-719 59-393 (651)
55 3lrq_A E3 ubiquitin-protein li 99.4 2.7E-13 9.3E-18 120.5 4.2 71 137-207 19-90 (100)
56 2ckl_A Polycomb group ring fin 99.4 3.7E-13 1.3E-17 121.1 4.8 67 137-204 12-83 (108)
57 4ayc_A E3 ubiquitin-protein li 99.3 1.9E-12 6.5E-17 121.8 9.5 64 138-204 51-114 (138)
58 2egp_A Tripartite motif-contai 99.3 3.1E-14 1.1E-18 120.5 -2.6 65 136-200 8-78 (79)
59 2ecw_A Tripartite motif-contai 99.3 1.7E-13 5.7E-18 117.3 1.3 66 135-200 14-84 (85)
60 3hct_A TNF receptor-associated 99.3 4.6E-13 1.6E-17 122.6 4.2 68 136-203 14-81 (118)
61 1jm7_B BARD1, BRCA1-associated 99.3 4.9E-13 1.7E-17 122.2 3.4 68 137-207 19-87 (117)
62 2ckl_B Ubiquitin ligase protei 99.3 7E-13 2.4E-17 128.6 4.1 69 137-205 51-121 (165)
63 2ecv_A Tripartite motif-contai 99.3 2.4E-13 8E-18 116.4 0.7 66 135-200 14-84 (85)
64 2csy_A Zinc finger protein 183 99.3 9.2E-13 3.2E-17 112.2 4.2 64 136-201 11-74 (81)
65 3l11_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 122.1 2.2 69 136-204 11-86 (115)
66 2yur_A Retinoblastoma-binding 99.3 1.7E-12 5.9E-17 108.7 5.3 60 134-193 9-71 (74)
67 1jm7_A BRCA1, breast cancer ty 99.3 1.3E-12 4.3E-17 118.1 4.0 68 138-205 19-88 (112)
68 2ecy_A TNF receptor-associated 99.3 2.5E-12 8.5E-17 105.1 5.4 56 135-190 10-65 (66)
69 1oyz_A Hypothetical protein YI 99.3 4.2E-10 1.4E-14 116.9 22.2 224 444-718 23-248 (280)
70 2djb_A Polycomb group ring fin 99.2 8.4E-12 2.9E-16 103.8 6.8 58 135-193 10-68 (72)
71 3ltm_A Alpha-REP4; protein eng 99.2 5.1E-10 1.8E-14 111.2 20.3 188 443-681 18-206 (211)
72 3ltm_A Alpha-REP4; protein eng 99.2 5.9E-10 2E-14 110.8 19.9 188 485-723 18-206 (211)
73 3ltj_A Alpharep-4; protein eng 99.2 1.1E-09 3.9E-14 107.8 20.9 184 443-677 13-197 (201)
74 3hcs_A TNF receptor-associated 99.2 6.1E-12 2.1E-16 122.5 4.2 67 136-202 14-80 (170)
75 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.9E-16 103.0 5.2 56 135-190 15-72 (73)
76 1rmd_A RAG1; V(D)J recombinati 99.2 6E-12 2E-16 114.7 3.4 66 137-202 20-86 (116)
77 3ltj_A Alpharep-4; protein eng 99.2 1.6E-09 5.5E-14 106.7 21.3 184 486-720 14-198 (201)
78 1g25_A CDK-activating kinase a 99.2 1.2E-11 4.1E-16 100.7 4.8 55 139-193 2-61 (65)
79 3knv_A TNF receptor-associated 99.2 3.8E-12 1.3E-16 120.2 1.3 67 136-202 27-102 (141)
80 2ysj_A Tripartite motif-contai 99.1 5E-11 1.7E-15 96.3 5.2 46 136-181 16-63 (63)
81 3ng2_A RNF4, snurf, ring finge 99.1 3E-11 1E-15 99.8 3.6 58 136-194 6-70 (71)
82 1oyz_A Hypothetical protein YI 99.0 8.4E-09 2.9E-13 107.0 20.3 198 483-719 20-220 (280)
83 2ct2_A Tripartite motif protei 99.0 1.9E-10 6.5E-15 99.0 6.0 55 134-188 9-69 (88)
84 2d8t_A Dactylidin, ring finger 99.0 5.1E-11 1.7E-15 98.7 1.6 53 136-189 11-63 (71)
85 4fdd_A Transportin-1; heat rep 99.0 9.8E-10 3.4E-14 132.2 13.1 270 443-720 173-471 (852)
86 2ecj_A Tripartite motif-contai 99.0 2.2E-10 7.5E-15 90.6 4.5 46 136-181 11-58 (58)
87 2xeu_A Ring finger protein 4; 99.0 8.9E-11 3E-15 94.7 2.2 54 139-193 2-62 (64)
88 4fdd_A Transportin-1; heat rep 99.0 2.7E-09 9.1E-14 128.4 15.7 274 443-721 127-430 (852)
89 1e4u_A Transcriptional repress 98.9 5.2E-10 1.8E-14 94.6 5.1 55 136-190 7-65 (78)
90 2ea6_A Ring finger protein 4; 98.9 4.5E-10 1.5E-14 91.9 4.6 52 135-187 10-68 (69)
91 2ect_A Ring finger protein 126 98.9 8.7E-10 3E-14 92.8 5.0 57 136-193 11-70 (78)
92 1b3u_A Protein (protein phosph 98.9 3.5E-08 1.2E-12 112.1 19.8 263 443-717 163-428 (588)
93 1b3u_A Protein (protein phosph 98.9 2.1E-08 7.2E-13 114.0 17.7 264 443-720 323-587 (588)
94 1ibr_B P95, importin beta-1 su 98.9 2.4E-08 8.4E-13 109.9 15.9 274 443-722 127-439 (462)
95 2vgl_B AP-2 complex subunit be 98.8 1.3E-07 4.3E-12 109.4 20.2 262 443-717 120-416 (591)
96 4gmo_A Putative uncharacterize 98.8 3.5E-08 1.2E-12 116.3 15.6 192 527-719 34-257 (684)
97 4ap4_A E3 ubiquitin ligase RNF 98.8 1.5E-09 5.1E-14 100.4 3.0 56 137-193 4-66 (133)
98 4gmo_A Putative uncharacterize 98.8 3.3E-08 1.1E-12 116.4 14.0 191 487-678 35-258 (684)
99 1chc_A Equine herpes virus-1 r 98.8 3.7E-09 1.3E-13 86.4 4.1 48 139-187 4-52 (68)
100 2ecm_A Ring finger and CHY zin 98.8 4.1E-09 1.4E-13 82.3 4.0 47 139-186 4-54 (55)
101 2ecn_A Ring finger protein 141 98.8 1.4E-09 4.9E-14 89.5 1.3 52 136-189 11-62 (70)
102 1bor_A Transcription factor PM 98.8 1.6E-09 5.5E-14 85.4 1.5 47 138-188 4-50 (56)
103 2ep4_A Ring finger protein 24; 98.7 9.3E-09 3.2E-13 85.5 5.4 53 135-188 10-65 (74)
104 2kiz_A E3 ubiquitin-protein li 98.7 1.3E-08 4.3E-13 83.5 5.9 52 136-188 10-64 (69)
105 1v87_A Deltex protein 2; ring- 98.7 1.3E-08 4.6E-13 91.9 5.3 51 137-187 22-94 (114)
106 1iym_A EL5; ring-H2 finger, ub 98.7 1E-08 3.6E-13 80.0 3.7 49 137-186 2-54 (55)
107 2l0b_A E3 ubiquitin-protein li 98.7 1.4E-08 4.9E-13 88.2 4.8 50 137-187 37-89 (91)
108 1x4j_A Ring finger protein 38; 98.6 1.3E-08 4.3E-13 85.0 3.5 49 138-187 21-72 (75)
109 4ic3_A E3 ubiquitin-protein li 98.6 9.7E-09 3.3E-13 85.8 1.6 44 139-187 23-67 (74)
110 2y1n_A E3 ubiquitin-protein li 98.6 1.6E-08 5.6E-13 109.5 3.4 50 140-189 332-381 (389)
111 2vgl_B AP-2 complex subunit be 98.6 3.1E-07 1.1E-11 106.2 14.3 258 444-720 49-311 (591)
112 4ap4_A E3 ubiquitin ligase RNF 98.5 1.6E-08 5.6E-13 93.3 1.3 57 137-194 69-132 (133)
113 1qgr_A Protein (importin beta 98.5 1.9E-06 6.3E-11 103.0 18.0 273 443-721 171-480 (876)
114 1qgr_A Protein (importin beta 98.5 2.4E-06 8.2E-11 102.0 18.4 273 443-721 127-438 (876)
115 2ecg_A Baculoviral IAP repeat- 98.5 5.9E-08 2E-12 81.1 3.1 45 139-188 24-69 (75)
116 1wim_A KIAA0161 protein; ring 98.5 3.1E-08 1.1E-12 86.5 1.1 67 138-205 3-83 (94)
117 1w63_A Adapter-related protein 98.4 1.8E-05 6.1E-10 92.0 23.1 257 444-721 70-380 (618)
118 2bpt_A Importin beta-1 subunit 98.4 2.6E-06 9E-11 101.4 16.4 272 443-720 368-668 (861)
119 1w63_A Adapter-related protein 98.4 6.8E-06 2.3E-10 95.5 18.6 220 443-679 141-415 (618)
120 2bpt_A Importin beta-1 subunit 98.3 8.9E-06 3E-10 96.8 18.9 275 443-721 133-441 (861)
121 2vje_A E3 ubiquitin-protein li 98.3 2.6E-07 8.9E-12 74.8 3.7 50 137-187 5-57 (64)
122 2ecl_A Ring-box protein 2; RNF 98.3 3.4E-07 1.2E-11 77.7 3.8 48 139-187 14-76 (81)
123 1ibr_B P95, importin beta-1 su 98.3 3.6E-06 1.2E-10 92.4 12.9 234 443-681 171-440 (462)
124 3b2a_A TON_1937, putative unch 98.2 2.5E-05 8.6E-10 78.3 16.1 187 443-639 32-220 (265)
125 2vje_B MDM4 protein; proto-onc 98.2 5.2E-07 1.8E-11 72.8 3.3 48 139-187 6-56 (63)
126 1u6g_C TIP120 protein, CAND1; 98.2 1.7E-06 5.8E-11 108.1 9.3 271 443-721 5-285 (1230)
127 2yho_A E3 ubiquitin-protein li 98.2 3.3E-07 1.1E-11 77.4 0.9 44 139-187 17-61 (79)
128 1u6g_C TIP120 protein, CAND1; 98.2 6.9E-06 2.4E-10 102.6 13.1 230 443-681 47-287 (1230)
129 3t6p_A Baculoviral IAP repeat- 98.1 4.5E-07 1.5E-11 97.6 0.8 45 138-187 293-338 (345)
130 3dpl_R Ring-box protein 1; ubi 98.1 2.2E-06 7.6E-11 76.5 4.6 47 139-186 36-100 (106)
131 2qk2_A LP04448P; mini spindles 98.0 2.6E-05 9E-10 79.0 12.2 181 448-637 19-205 (242)
132 2vgl_A Adaptor protein complex 98.0 0.00022 7.6E-09 82.8 20.6 252 444-719 111-397 (621)
133 1ho8_A Vacuolar ATP synthase s 98.0 9E-05 3.1E-09 82.1 16.2 262 455-719 136-475 (480)
134 2qk2_A LP04448P; mini spindles 98.0 7.2E-05 2.5E-09 75.7 14.1 182 531-720 19-205 (242)
135 2vgl_A Adaptor protein complex 98.0 0.00043 1.5E-08 80.4 22.0 253 443-718 145-431 (621)
136 2ea5_A Cell growth regulator w 98.0 6.2E-06 2.1E-10 67.5 4.5 46 137-187 12-58 (68)
137 1te4_A Conserved protein MTH18 97.9 1.6E-06 5.3E-11 79.8 0.4 121 443-595 11-131 (131)
138 2d8s_A Cellular modulator of i 97.9 1.5E-05 5.1E-10 67.4 5.3 52 137-188 12-71 (80)
139 4ady_A RPN2, 26S proteasome re 97.8 0.0013 4.5E-08 78.7 23.3 236 445-722 430-678 (963)
140 3b2a_A TON_1937, putative unch 97.8 0.00028 9.7E-09 70.8 14.2 221 486-718 33-259 (265)
141 2qk1_A Protein STU2; STU2P, XM 97.8 0.00011 3.8E-09 75.4 11.3 186 449-637 21-220 (249)
142 1te4_A Conserved protein MTH18 97.8 2.8E-06 9.7E-11 78.0 -0.6 119 485-634 11-130 (131)
143 4a0k_B E3 ubiquitin-protein li 97.7 6E-06 2.1E-10 74.9 0.0 45 141-186 49-111 (117)
144 1ho8_A Vacuolar ATP synthase s 97.6 0.00074 2.5E-08 74.9 16.1 230 448-679 171-477 (480)
145 3dad_A FH1/FH2 domain-containi 97.5 0.0029 1E-07 67.0 18.3 176 443-618 117-314 (339)
146 2iw3_A Elongation factor 3A; a 97.5 0.0073 2.5E-07 73.0 22.6 260 444-721 54-325 (986)
147 2qk1_A Protein STU2; STU2P, XM 97.4 0.00063 2.1E-08 69.7 11.6 189 532-721 21-221 (249)
148 2db0_A 253AA long hypothetical 97.4 0.033 1.1E-06 54.0 21.8 212 486-721 32-247 (253)
149 3dad_A FH1/FH2 domain-containi 97.3 0.0067 2.3E-07 64.2 17.8 179 532-710 123-326 (339)
150 3tjz_B Coatomer subunit gamma; 97.2 0.01 3.4E-07 64.0 17.7 245 444-720 68-316 (355)
151 2db0_A 253AA long hypothetical 97.0 0.27 9.1E-06 47.7 25.7 212 443-679 31-247 (253)
152 3tjz_B Coatomer subunit gamma; 97.0 0.0049 1.7E-07 66.4 12.9 238 444-712 104-345 (355)
153 4ady_A RPN2, 26S proteasome re 96.7 0.15 5E-06 61.3 23.3 234 444-720 392-641 (963)
154 2ct0_A Non-SMC element 1 homol 96.4 0.003 1E-07 52.3 4.8 47 141-187 16-64 (74)
155 1vyx_A ORF K3, K3RING; zinc-bi 96.4 0.0031 1E-07 50.0 4.6 49 139-187 5-59 (60)
156 2iw3_A Elongation factor 3A; a 96.2 0.23 7.9E-06 60.1 21.5 217 445-677 96-323 (986)
157 3vk6_A E3 ubiquitin-protein li 96.1 0.0039 1.3E-07 54.0 4.1 46 142-187 3-49 (101)
158 3oc3_A Helicase MOT1, MOT1; re 96.1 0.02 6.7E-07 64.2 10.2 238 445-716 175-432 (800)
159 4ffb_C Protein STU2; tubulin f 95.9 0.13 4.5E-06 52.8 15.3 184 449-637 14-212 (278)
160 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.0013 4.3E-08 69.5 -0.2 47 141-187 309-373 (381)
161 2fv2_A RCD1 required for cell 95.7 0.44 1.5E-05 48.5 17.2 226 445-676 4-266 (268)
162 1wa5_C Importin alpha RE-expor 95.5 0.04 1.4E-06 66.9 10.9 251 459-718 376-668 (960)
163 3ebb_A Phospholipase A2-activa 95.3 0.47 1.6E-05 49.8 16.9 136 581-718 161-304 (304)
164 3i2d_A E3 SUMO-protein ligase 95.1 0.016 5.5E-07 62.0 4.8 62 140-201 249-314 (371)
165 3ebb_A Phospholipase A2-activa 94.9 0.29 1E-05 51.4 14.1 184 487-671 104-299 (304)
166 2fv2_A RCD1 required for cell 94.6 0.51 1.7E-05 48.0 14.0 170 462-635 74-266 (268)
167 4ffb_C Protein STU2; tubulin f 94.3 0.55 1.9E-05 48.0 14.3 185 532-722 14-214 (278)
168 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.017 5.8E-07 50.3 2.2 34 139-172 2-38 (101)
169 4fo9_A E3 SUMO-protein ligase 93.9 0.042 1.4E-06 58.6 4.8 64 138-201 213-280 (360)
170 2of3_A ZYG-9; multifunctional 93.3 0.97 3.3E-05 46.4 13.7 178 448-637 50-236 (266)
171 1upk_A MO25 protein; transfera 93.0 1.3 4.5E-05 46.8 14.3 196 443-640 77-286 (341)
172 1wa5_C Importin alpha RE-expor 92.9 3.7 0.00013 49.5 20.4 217 455-677 416-669 (960)
173 1lrv_A LRV, leucine-rich repea 92.9 0.054 1.9E-06 55.2 3.5 45 652-715 197-241 (244)
174 2x1g_F Cadmus; transport prote 92.3 4.5 0.00015 48.7 19.9 209 498-719 476-721 (971)
175 3eg5_B Protein diaphanous homo 92.1 4.2 0.00014 43.9 17.3 154 463-617 86-273 (383)
176 2x19_B Importin-13; nuclear tr 91.0 8.7 0.0003 46.0 20.4 133 496-638 459-600 (963)
177 3oc3_A Helicase MOT1, MOT1; re 90.7 0.56 1.9E-05 52.8 8.5 165 445-633 264-432 (800)
178 1upk_A MO25 protein; transfera 90.2 14 0.00047 39.1 18.2 197 482-680 74-285 (341)
179 2f31_A Diaphanous protein homo 89.9 6 0.00021 39.5 15.0 134 484-617 41-207 (233)
180 3u0r_A Apoptosis inhibitor 5; 89.9 6.8 0.00023 43.3 16.1 129 446-593 31-159 (507)
181 2x19_B Importin-13; nuclear tr 89.7 10 0.00034 45.5 19.5 136 537-680 459-601 (963)
182 2x1g_F Cadmus; transport prote 89.5 7.1 0.00024 47.0 17.9 131 539-679 476-616 (971)
183 3pwf_A Rubrerythrin; non heme 88.2 7.7 0.00026 36.9 13.5 31 136-186 134-164 (170)
184 3nw0_A Non-structural maintena 86.6 0.56 1.9E-05 47.4 4.7 48 141-188 181-230 (238)
185 2of3_A ZYG-9; multifunctional 86.1 3.3 0.00011 42.5 10.2 133 453-596 96-235 (266)
186 3m1i_C Exportin-1; heat repeat 84.8 21 0.00072 43.4 18.5 218 445-679 17-264 (1049)
187 2f31_A Diaphanous protein homo 84.2 12 0.00041 37.2 13.3 128 582-709 68-217 (233)
188 3eg5_B Protein diaphanous homo 83.9 18 0.0006 39.0 15.3 140 567-706 108-280 (383)
189 3l9t_A Putative uncharacterize 82.7 14 0.00047 37.1 12.7 177 441-647 34-218 (240)
190 2bnx_A Diaphanous protein homo 82.5 28 0.00097 37.3 16.3 134 485-618 46-212 (386)
191 1lrv_A LRV, leucine-rich repea 82.4 0.82 2.8E-05 46.4 3.7 154 475-714 63-217 (244)
192 3u0r_A Apoptosis inhibitor 5; 80.8 7.8 0.00027 42.9 10.9 118 579-715 39-158 (507)
193 2kkx_A Uncharacterized protein 80.7 1.4 4.9E-05 37.9 4.0 57 134-191 20-83 (102)
194 3l9t_A Putative uncharacterize 80.6 23 0.00078 35.5 13.4 143 444-607 71-218 (240)
195 4hat_C Exportin-1; heat repeat 80.4 45 0.0015 40.6 18.7 218 444-678 16-263 (1023)
196 3m1i_C Exportin-1; heat repeat 79.4 17 0.00059 44.2 14.8 191 486-680 344-571 (1049)
197 2bnx_A Diaphanous protein homo 79.3 26 0.0009 37.6 14.6 127 582-708 72-220 (386)
198 3gjx_A Exportin-1; transport, 78.4 44 0.0015 40.9 17.7 220 444-680 28-277 (1073)
199 3ibv_A Exportin-T; karyopherin 78.2 90 0.0031 37.7 20.4 207 457-680 21-262 (980)
200 1lsh_A Lipovitellin (LV-1N, LV 78.1 95 0.0033 37.9 20.7 243 444-719 311-597 (1056)
201 4hat_C Exportin-1; heat repeat 77.9 13 0.00045 45.3 12.9 138 498-638 465-619 (1023)
202 1weo_A Cellulose synthase, cat 77.7 3 0.0001 35.1 4.9 48 140-187 16-70 (93)
203 3a6p_A Exportin-5; exportin-5, 76.3 72 0.0025 39.5 19.2 219 444-680 11-278 (1204)
204 3ibv_A Exportin-T; karyopherin 75.9 26 0.0009 42.4 14.8 270 447-722 196-526 (980)
205 1x5b_A Signal transducing adap 73.3 10 0.00034 35.8 8.1 73 442-514 50-124 (163)
206 3c2g_A SYS-1 protein; beta-cat 70.6 88 0.003 33.3 14.8 108 510-618 266-376 (619)
207 1mhq_A ADP-ribosylation factor 69.9 13 0.00045 34.4 7.9 73 442-514 36-115 (148)
208 3ldz_A STAM-1, signal transduc 69.1 13 0.00044 34.1 7.7 73 442-514 40-113 (140)
209 3c2g_A SYS-1 protein; beta-cat 68.6 93 0.0032 33.1 14.5 114 588-702 263-378 (619)
210 1yuz_A Nigerythrin; rubrythrin 67.4 42 0.0014 32.7 11.4 28 138-185 169-196 (202)
211 1juq_A ADP-ribosylation factor 67.3 13 0.00046 35.3 7.6 73 442-514 48-127 (171)
212 3gjx_A Exportin-1; transport, 63.2 88 0.003 38.2 15.5 216 487-720 29-275 (1073)
213 3g2s_A C-terminal fragment of 62.4 27 0.00093 32.3 8.5 73 442-514 46-125 (149)
214 3qml_C Protein SLS1, nucleotid 61.5 1.5E+02 0.0052 30.7 14.6 146 568-719 22-188 (315)
215 1x5b_A Signal transducing adap 60.7 15 0.00052 34.5 6.6 71 650-720 53-125 (163)
216 1mhq_A ADP-ribosylation factor 56.8 19 0.00065 33.3 6.4 71 650-720 39-116 (148)
217 3qml_C Protein SLS1, nucleotid 55.8 98 0.0034 32.1 12.0 147 444-596 22-188 (315)
218 3ldz_A STAM-1, signal transduc 55.3 16 0.00053 33.5 5.5 71 650-720 43-114 (140)
219 3zyq_A Hepatocyte growth facto 54.5 26 0.00089 34.7 7.4 72 443-514 44-117 (226)
220 1juq_A ADP-ribosylation factor 53.1 18 0.00063 34.3 5.7 71 650-720 51-128 (171)
221 1lsh_A Lipovitellin (LV-1N, LV 52.6 2.3E+02 0.008 34.4 16.9 164 487-680 392-578 (1056)
222 3o2t_A Symplekin; heat repeat, 50.1 2.1E+02 0.0072 30.6 14.1 66 443-513 62-127 (386)
223 3pst_A Protein DOA1; protein d 48.1 64 0.0022 35.1 9.6 127 461-597 243-389 (425)
224 1dvp_A HRS, hepatocyte growth 48.0 38 0.0013 33.3 7.3 73 442-514 40-114 (220)
225 1lko_A Rubrerythrin all-iron(I 47.6 44 0.0015 32.1 7.6 27 140-185 155-181 (191)
226 3g2s_A C-terminal fragment of 47.4 30 0.001 32.0 6.1 71 650-720 49-126 (149)
227 2jvx_A NF-kappa-B essential mo 47.4 5.3 0.00018 26.4 0.6 16 138-153 1-16 (28)
228 3a6p_A Exportin-5; exportin-5, 46.1 2.8E+02 0.0097 34.1 16.4 124 499-637 26-162 (1204)
229 3mjh_B Early endosome antigen 45.5 4.8 0.00017 27.8 0.2 16 139-154 4-19 (34)
230 3gae_A Protein DOA1; UFD3, CDC 44.3 32 0.0011 34.7 6.2 127 461-597 71-217 (253)
231 6rxn_A Rubredoxin; electron tr 44.1 6.9 0.00024 28.9 0.9 13 136-148 26-38 (46)
232 1elk_A Target of MYB1; superhe 43.0 68 0.0023 29.7 7.9 73 442-514 51-129 (157)
233 1vdy_A Hypothetical protein (R 42.9 41 0.0014 30.8 6.1 75 650-724 50-134 (140)
234 1dvp_A HRS, hepatocyte growth 41.8 34 0.0012 33.6 5.9 71 650-720 43-115 (220)
235 3zyq_A Hepatocyte growth facto 41.7 25 0.00084 34.9 4.8 72 650-721 46-119 (226)
236 3s4w_B Protein FACD2, fanconi 39.3 6.3E+02 0.021 31.5 17.4 257 443-719 156-466 (1323)
237 1e8j_A Rubredoxin; iron-sulfur 39.0 10 0.00035 28.7 1.2 13 136-148 32-44 (52)
238 4rxn_A Rubredoxin; electron tr 38.8 9.2 0.00032 29.3 0.9 13 136-148 32-44 (54)
239 2ko5_A Ring finger protein Z; 37.9 17 0.00058 31.0 2.4 49 140-190 28-76 (99)
240 3gae_A Protein DOA1; UFD3, CDC 36.4 1.4E+02 0.0048 29.9 9.6 130 579-714 101-252 (253)
241 3pst_A Protein DOA1; protein d 35.3 1.7E+02 0.006 31.7 10.5 130 579-714 273-424 (425)
242 3l3f_X Protein DOA1, DOA1/UFD3 34.3 1.2E+02 0.0042 32.2 9.0 127 461-597 180-326 (362)
243 1yk4_A Rubredoxin, RD; electro 34.2 12 0.00042 28.3 0.9 13 136-148 31-43 (52)
244 2kn9_A Rubredoxin; metalloprot 33.9 13 0.00045 30.8 1.1 13 136-148 56-68 (81)
245 1m3v_A FLIN4, fusion of the LI 33.9 14 0.00048 32.7 1.4 52 138-190 30-84 (122)
246 2xqn_T Testin, TESS; metal-bin 33.6 22 0.00075 31.3 2.7 48 138-188 28-76 (126)
247 2v3b_B Rubredoxin 2, rubredoxi 33.4 12 0.00043 28.6 0.8 13 136-148 32-44 (55)
248 3uk3_C Zinc finger protein 217 31.2 18 0.00063 26.2 1.5 37 140-187 4-44 (57)
249 1dx8_A Rubredoxin; electron tr 31.1 14 0.00049 29.8 0.9 13 136-148 36-48 (70)
250 2cs3_A Protein C14ORF4, MY039 30.4 44 0.0015 27.6 3.6 35 139-173 14-52 (93)
251 1elk_A Target of MYB1; superhe 29.0 89 0.003 28.9 6.1 71 650-720 54-130 (157)
252 1s24_A Rubredoxin 2; electron 28.6 17 0.00059 30.6 0.9 13 136-148 64-76 (87)
253 3gs3_A Symplekin, LD45768P; he 28.3 4.6E+02 0.016 26.2 15.5 118 443-595 52-171 (257)
254 3l3f_X Protein DOA1, DOA1/UFD3 28.3 1.5E+02 0.005 31.5 8.4 130 579-714 210-361 (362)
255 2xjy_A Rhombotin-2; oncoprotei 27.6 38 0.0013 30.0 3.2 49 138-187 27-78 (131)
256 2jtn_A LIM domain-binding prot 26.0 62 0.0021 30.5 4.6 48 138-188 85-132 (182)
257 2eps_A POZ-, at HOOK-, and zin 25.9 70 0.0024 23.0 4.0 38 139-187 11-53 (54)
258 1l8d_A DNA double-strand break 24.7 19 0.00066 31.3 0.6 13 175-187 47-59 (112)
259 2rgt_A Fusion of LIM/homeobox 23.5 68 0.0023 29.8 4.3 49 138-189 31-79 (169)
260 2jne_A Hypothetical protein YF 23.4 4.9 0.00017 34.4 -3.3 40 141-186 33-72 (101)
261 1rut_X Flinc4, fusion protein 22.8 25 0.00085 33.6 1.0 50 138-188 30-82 (188)
262 3o2t_A Symplekin; heat repeat, 22.4 2.1E+02 0.0071 30.7 8.2 186 443-637 24-256 (386)
263 2ctd_A Zinc finger protein 512 21.3 45 0.0015 27.8 2.3 37 140-187 34-74 (96)
264 4gzn_C ZFP-57, zinc finger pro 20.9 37 0.0013 25.9 1.5 36 141-187 5-44 (60)
265 4dyq_A Gene 1 protein; GP1, oc 20.2 2.9E+02 0.0098 24.7 7.7 36 44-87 15-50 (140)
266 2o35_A Hypothetical protein DU 20.1 37 0.0013 29.1 1.4 12 162-173 43-54 (105)
267 1bbo_A Human enhancer-binding 20.1 24 0.00083 25.5 0.2 36 141-187 2-41 (57)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.7e-29 Score=272.51 Aligned_cols=264 Identities=22% Similarity=0.274 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHhc
Q 004806 459 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIANA 526 (729)
Q Consensus 459 evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~-~k~~I~~~ 526 (729)
..+.+|+++|.+++.+ +++|..+.+.|+++.|+.+|.. .++.++++|+++|.||+.+.. +|..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3456899999999996 7999999999999999999952 246799999999999998754 77777655
Q ss_pred -CCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhccc-CcHH
Q 004806 527 -NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHEN 601 (729)
Q Consensus 527 -g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~-~~en 601 (729)
|+|+.|+.+|++++.++++.|+++|.||+.. +++|..|++.|+|+.|+++| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5699999999999999999999999999984 57899999999999999975 66789999999999999999 7789
Q ss_pred HHHHH-HcCcHHHHHHhcC-CCH----HHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 602 KARIV-QAGAVKHLVDLMD-PAA----GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 602 ~~~lv-~~G~V~~Lv~LL~-~~~----~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
+..++ ..|+++.|+.+|. .+. .+++.|+++|.||+. .++.+..+.+.|+++.|+++|.+++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 7999999999994 222 589999999999995 8889999999999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
+|+||+..+++.+..+++.|+++.|+.+++++++++++.|.++|++|.....
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999998888899999999999999999999999999999999999987543
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3e-29 Score=282.44 Aligned_cols=278 Identities=23% Similarity=0.271 Sum_probs=243.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I 523 (729)
.++.|+++|+++++++|..|+..|++|+.+++.++..+.+.|+||.|+.+|+++++.+++.|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 378999999999999999999999999998888898999999999999999999999999999999999986 8899999
Q ss_pred HhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc--------CC--------CHHHHH
Q 004806 524 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--------NG--------TPRGKK 586 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~--------~~--------~~~v~~ 586 (729)
++.|+|++|+++|. +++++++++|+++|+||+..+++|..|++ |+++.|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999899999999 99999999993 22 456777
Q ss_pred HHHHHHHhcccCcHHHHHHHHc-CcHHHHHHhcC-------CCHHHHHHHHHHHHHHhCC--------------------
Q 004806 587 DAATALFNLSIYHENKARIVQA-GAVKHLVDLMD-------PAAGMVDKAVAVLANLATI-------------------- 638 (729)
Q Consensus 587 ~Al~aL~nLs~~~en~~~lv~~-G~V~~Lv~LL~-------~~~~v~e~Al~~L~nLa~~-------------------- 638 (729)
.|+++|.||+..++++..+++. |+++.|+.+|. .+..+++.++.+|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998999999997 99999999994 3556889999999999742
Q ss_pred -------------------------------cchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHh----
Q 004806 639 -------------------------------PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR---- 682 (729)
Q Consensus 639 -------------------------------~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~---- 682 (729)
+.+.+.+++.++++.|+.+|.. .++..++.|+++|+|||.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 1233445566778999999975 5799999999999999987643
Q ss_pred h-HHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 683 F-CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 683 ~-~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
. +..+.++|+++.|+.++.+++.++++.|.++|++|....+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2 2344468999999999999999999999999999987543
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.2e-28 Score=283.00 Aligned_cols=279 Identities=22% Similarity=0.257 Sum_probs=242.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKS 521 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~~k~ 521 (729)
..++.||++|.++++++|..|+..|++++..+..+|..|++.|+||.|+.+|.+++..++++|+++|.||+.+ +++|.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3589999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc------------------CCCH
Q 004806 522 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG------------------NGTP 582 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~------------------~~~~ 582 (729)
.|++.|+|++|+.+|++ .+.+++++|+++|++||.++++|..|+. ++++.|+.+|. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 67999999872 2257
Q ss_pred HHHHHHHHHHHhcccCc-HHHHHHHH-cCcHHHHHHhcC-------CCHHHHHHHHHHHHHHhCCcc-------------
Q 004806 583 RGKKDAATALFNLSIYH-ENKARIVQ-AGAVKHLVDLMD-------PAAGMVDKAVAVLANLATIPD------------- 640 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~-en~~~lv~-~G~V~~Lv~LL~-------~~~~v~e~Al~~L~nLa~~~e------------- 640 (729)
.+++.|+++|.||+... +++..+++ .|+++.|+.++. .+...++.|+++|.||+...+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 99999999999999866 45888888 567789999983 456789999999999997521
Q ss_pred -------------hHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCH----hhHHHHHhCCCHHHHHHhhhC
Q 004806 641 -------------GRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSS----RFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 641 -------------~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~----~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
+.+.+++.++++.|+.+|. +.++.++++|+++|+|||.+.. ..+..+.++|+++.|+.|+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 2223334456788899996 4689999999999999998762 234456668999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCcC
Q 004806 703 GTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 703 g~~rvr~~A~~lL~~L~~~~~ 723 (729)
+++++++.|.++|++|.....
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999987654
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=275.49 Aligned_cols=260 Identities=23% Similarity=0.283 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHhc-CC
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIANA-NA 528 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~-~k~~I~~~-g~ 528 (729)
.+|+++|.+++.+ +++|..+.+.|+++.|+.+|.. .++.++++|+++|.||+.+++ ++..+... |+
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 4899999999885 8999999999999999999952 246789999999999998765 67677654 66
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhccc-CcHHHHH
Q 004806 529 IEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHENKAR 604 (729)
Q Consensus 529 I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~-~~en~~~ 604 (729)
|+.|+.+|.+++.++++.|+++|.||+.. +++|..|++.|+|+.|+.+| .+++..+++.|+.+|+||+. .++++..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999984 56889999999999999975 56789999999999999999 7889999
Q ss_pred HH-HcCcHHHHHHhcC-CC-H---HHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 605 IV-QAGAVKHLVDLMD-PA-A---GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 605 lv-~~G~V~~Lv~LL~-~~-~---~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
++ ..|+++.|+.+|. .+ . .+++.|+++|.||+. .++.+..+.+.|+++.|+.+|.+++..++++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 98 7999999999994 22 2 589999999999994 8888999999999999999999999999999999999
Q ss_pred HHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 675 nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
||+..+++++..+++.|+++.|+.++.++++++++.|.++|++|....
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999888889999999999999999999999999999999999998764
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=8.2e-27 Score=262.53 Aligned_cols=281 Identities=21% Similarity=0.263 Sum_probs=244.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.+.|+.|+++|+++++++|..|+++|++|+.++++++..|++.|+|+.|+.+|. +.++++++.|+++|+||+.++.+|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 578999999999999999999999999999988999999999999999999999 8899999999999999999988999
Q ss_pred HHHhcCCHHHHHHHhc--------CC--------CHHHHHHHHHHHHHhccCcchhhhhhcc-CcHHHHHHhhcCC----
Q 004806 522 AIANANAIEPLIHVLQ--------TG--------SPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNG---- 580 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~--------s~--------~~e~r~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~~~---- 580 (729)
.+++ |++++|+.+|. ++ +..+..+|+++|+||+..++++..+.+. |+++.|+.+|+++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 9999 99999999993 32 3556679999999999998889999987 9999999887630
Q ss_pred --------------------------------------------------------------------------------
Q 004806 581 -------------------------------------------------------------------------------- 580 (729)
Q Consensus 581 -------------------------------------------------------------------------------- 580 (729)
T Consensus 202 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (457)
T 1xm9_A 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281 (457)
T ss_dssp CTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS
T ss_pred CCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC
Confidence
Q ss_pred ---------------CHHHHHHHHHHHHhcccCcH-----HHHHHH-HcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 581 ---------------TPRGKKDAATALFNLSIYHE-----NKARIV-QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 581 ---------------~~~v~~~Al~aL~nLs~~~e-----n~~~lv-~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
++.+++.|+++|.||+.... ..+.++ +.|+++.|+++| ..+..++..|+++|.||+.+
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 24556678999999987432 212334 689999999999 46788999999999999998
Q ss_pred cchHHHHHhCCcHHHHHHHHccCC------HHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHH
Q 004806 639 PDGRVAIGQENGIPVLVEVVELGS------ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKA 711 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s~s------~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A 711 (729)
.+.+..+. .++++.|+++|...+ +.+...++++|.++...++.+...+.+.|++++|+.|+.++ +++++++|
T Consensus 362 ~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 362 PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 87777665 479999999998753 46888999999999999888999999999999999999999 99999999
Q ss_pred HHHHHHhhcCcCcC
Q 004806 712 QALLSYFRNQRHGN 725 (729)
Q Consensus 712 ~~lL~~L~~~~~~~ 725 (729)
.++|.++-.+++-+
T Consensus 441 ~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 441 RLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHTTSSSTTCS
T ss_pred HHHHHHHHcchhhh
Confidence 99999887766543
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.4e-26 Score=263.97 Aligned_cols=278 Identities=20% Similarity=0.229 Sum_probs=250.2
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.||++|+ ++++++|.+|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +..+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 478999999997 55689999999999999999999999999999999999999999999999999999999986 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcchhhhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 521 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+.+.|++++|+.+|...+ ..++.+++++|.+++........+. ..++++.|+.+|.+.+..++..|+++|.+
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999998654 4578899999999998765554443 35899999999999999999999999999
Q ss_pred cccCcHH-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 595 LSIYHEN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~en-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
|+..... ...+++.|+++.|+.+| ..+..++..++.+|+||+.. +..+..+++.|+++.|+.+|.+.++.+++.|++
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 9986654 45667899999999999 46788999999999999884 455778889999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+|.||+.+++..+..+.+.|+++.|+.++.+++.++++.|.++|.++..
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998864
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=3.8e-26 Score=261.46 Aligned_cols=278 Identities=20% Similarity=0.228 Sum_probs=251.5
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.||++|+ +.++++|.+|+++|.+++.++..++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +.++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 578999999997 55689999999999999999999999999999999999999999999999999999999976 6789
Q ss_pred HHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcchhhhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 521 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+.+.|++++|+.+|...+ ..++.+++++|.+++........+. ..++++.|+.+|.++++.++..|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998654 4578899999999998765554443 46899999999999999999999999999
Q ss_pred cccCcH-HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 595 LSIYHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~e-n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
|+.... ....++..|+++.|+.+| +.+..++..++.+|+||+. .++.+..+++.|+++.|+.+|.+.++.++..|+|
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 998655 456677899999999999 4678899999999999988 4556788899999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+|.||+.+++..+..+++.|+++.|+.++.+++.++++.|.++|.+|..
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998864
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.7e-26 Score=273.26 Aligned_cols=280 Identities=16% Similarity=0.198 Sum_probs=250.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-----------------------------hhH---HHHHhcCcH
Q 004806 441 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-----------------------------DNR---MVIANCGAI 488 (729)
Q Consensus 441 ~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-----------------------------~nr---~~I~~~GaI 488 (729)
...+.++.||++|++++..+|..|++.|.+|+...+ .++ ..+.++|+|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 346899999999999999999999999999998542 123 678899999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh---
Q 004806 489 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--- 565 (729)
Q Consensus 489 ~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~--- 565 (729)
|.|+.+|.++++.++++|+++|.||+.+++++..+++.|++++|+.+|.++++..+++|+++|.+|+...+....+.
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 99999999999999999999999999988899999999999999999999999999999999999987544443332
Q ss_pred ccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 566 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
..|++++|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+| +.+..++..|+.+|+||+.+++.+
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 147999999999876 445567999999999986 57899999999999999998 567789999999999999999998
Q ss_pred HHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-CCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 643 VAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 643 ~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~-~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..+.+ .|+++.|+.++.+.+..+++.|+++|.+|+.+++..++.+++ .|+++.|+.++.+++.++++.|.++|.++..
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 88885 688999999999999999999999999999988888888998 8999999999999999999999999999865
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=260.17 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhcC------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcH----------HHHHHHHcCCC-
Q 004806 443 ETQVRKLVEDLKS------------TSLDTQREATAELRLLAKHNMDNRMVIANCGAI----------NILVDMLHSSE- 499 (729)
Q Consensus 443 ~~~V~~Lv~~L~s------------~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI----------~~Lv~LL~s~d- 499 (729)
.+.++.||++|+. ++++.|.+|+++|.+++...++......+.|++ +.++.+|.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 6789999999995 337999999999999999988888888888888 66677776642
Q ss_pred -HH-----HHH-------HHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcC-----------CCHHHHHHHHHHHHHhc
Q 004806 500 -TK-----IQE-------NAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-----------GSPEARENAAATLFSLS 555 (729)
Q Consensus 500 -~~-----v~e-------~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s-----------~~~e~r~~Aa~aL~nLS 555 (729)
.+ +.+ +|+++|.|++.++++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 444 9999999999999999999999999999999952 23678999999999999
Q ss_pred cCcc-hhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC--cHHHHHHHHcCcHHHHHHhc-C-CCHHHHHHHH
Q 004806 556 VIED-NKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-PAAGMVDKAV 629 (729)
Q Consensus 556 ~~~e-~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~--~en~~~lv~~G~V~~Lv~LL-~-~~~~v~e~Al 629 (729)
..++ ++..+.. .|+|+.|+.+|+++++.++..|+++|.||+.. ++++..+++.|+|+.|+++| . .+..+++.|+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 8655 6666654 47799999999999999999999999999984 67999999999999999975 4 5678899999
Q ss_pred HHHHHHhC-CcchHHHHH-hCCcHHHHHHHHccCCH----HHHHHHHHHHHHHhh---CCHhhHHHHHhCCCHHHHHHhh
Q 004806 630 AVLANLAT-IPDGRVAIG-QENGIPVLVEVVELGSA----RGKENAAAALLQLCT---NSSRFCSMVLQEGAVPPLVALS 700 (729)
Q Consensus 630 ~~L~nLa~-~~e~r~~i~-~~g~I~~Lv~lL~s~s~----~~ke~A~~aL~nL~~---~~~~~~~~vl~~G~v~~Lv~Ll 700 (729)
.+|+||+. +++.+..+. ..|+++.|+++|...++ .++++|+++|+||+. .++++++.+++.|+++.|+.++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999 778888887 78999999999987654 489999999999997 6788999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHhhc
Q 004806 701 QSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 701 ~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+++..+++.|.++|.+|..
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999974
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=4.1e-26 Score=270.07 Aligned_cols=279 Identities=18% Similarity=0.168 Sum_probs=250.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.+.|+.|+.+|+++++.+|.+|++.|.+++. +.++|..+.++|++++|+.+|.+.++.+++.|+++|.||+.+.+....
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4789999999999999999999999999997 567999999999999999999999999999999999999875443332
Q ss_pred H---HhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 523 I---ANANAIEPLIHVLQTG-SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 523 I---~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..|++.|+++.|+.+|.++++.+++.|+++|.||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 2 1246999999999876 355667899999999986 5788899999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 598 YHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 598 ~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
.++.+..++. .|+++.|+.+++ .+..++..|+++|+||+. ++.....+++ .|+++.|+.+|.+++..+++.|+++|
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999888886 799999999994 678899999999999999 6778888888 89999999999999999999999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCC---CHHHHHHHHHHHHHhhcCc
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg---~~rvr~~A~~lL~~L~~~~ 722 (729)
.|++..+++....+.+.|+++.|+.+++.. ++++.+.|.++|+.+-.+.
T Consensus 733 ~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 733 LNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999998888899999999999999999765 5899999999999986653
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=7.2e-26 Score=259.88 Aligned_cols=278 Identities=21% Similarity=0.264 Sum_probs=234.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~-s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.|+.||++|++++.++|..|+++|++|+.+ +.++|..|++.|+|+.|+.+|.+ .+.+++++|+.+|+||+.++.+|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 46899999999999999999999999999995 68999999999999999999997 68899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHhc------------------CCCHHHHHHHHHHHHHhccCc-chhhhhhcc-CcHHHHHHhhcC-
Q 004806 521 SAIANANAIEPLIHVLQ------------------TGSPEARENAAATLFSLSVIE-DNKIKIGRS-GAIGPLVDLLGN- 579 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~------------------s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~-g~I~~Lv~LL~~- 579 (729)
..|+. ++|++|+++|. ..+.+++++|+++|.||+... ++|..|++. |+++.|+.+|+.
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99995 57999999872 224789999999999999865 457777764 556666666542
Q ss_pred -------------------------------------------------------------------------CCHHHHH
Q 004806 580 -------------------------------------------------------------------------GTPRGKK 586 (729)
Q Consensus 580 -------------------------------------------------------------------------~~~~v~~ 586 (729)
.++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 2344556
Q ss_pred HHHHHHHhcccCc-----HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 587 DAATALFNLSIYH-----ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 587 ~Al~aL~nLs~~~-----en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
.|++||.|||... .++..+.+.|+++.|++|| ..+..++..|+++|.||+.+...+..| ..|+++.|+.+|.+
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence 6666777776532 2233344578999999999 467889999999999999988888766 67899999999987
Q ss_pred C--------CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHHHHHHHHHHHHHhhcCc
Q 004806 661 G--------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 661 ~--------s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~A~~lL~~L~~~~ 722 (729)
+ +..+...|+++|.||+..++.+.+.+++.|+|+.|+.++.++ .+++++.|.++|..|-.+.
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 5 578899999999999999999999999999999999999987 7999999999999986654
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=2.6e-26 Score=249.99 Aligned_cols=240 Identities=21% Similarity=0.260 Sum_probs=215.9
Q ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHH
Q 004806 443 ETQVRKLVEDLKS-----------TSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTAL 510 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-----------~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL 510 (729)
.+.++.|+.+|.. .++++|.+|++.|.+|++.+..++..+... |+||.|+.+|.++++++++.|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888888852 246789999999999999888899888654 6699999999999999999999999
Q ss_pred HHhhcC--CccHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhcc-Ccchhhhhh-ccCcHHHHHHhhcCCCH---
Q 004806 511 LNLSIN--DNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSV-IEDNKIKIG-RSGAIGPLVDLLGNGTP--- 582 (729)
Q Consensus 511 ~nLs~~--~~~k~~I~~~g~I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~-~~g~I~~Lv~LL~~~~~--- 582 (729)
.||+.. +.+|..|.+.|+|++|+++| ++++.++++.|+.+|+||+. .++++..|+ ..|+++.|+.+|.+++.
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 999975 56899999999999999975 66789999999999999999 678888888 68999999999997754
Q ss_pred -HHHHHHHHHHHhccc----CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHH
Q 004806 583 -RGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLV 655 (729)
Q Consensus 583 -~v~~~Al~aL~nLs~----~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv 655 (729)
.+++.|+++|.||+. .++++..+++.|+++.|+.+| +.+..+++.|+++|+||+. +++.+..+++.|+++.|+
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv 311 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 589999999999995 889999999999999999999 4678899999999999995 788899999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 656 EVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 656 ~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
++|.++++.+++.|+++|.||+.+.+.
T Consensus 312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 312 NLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999998764
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=1.2e-24 Score=247.84 Aligned_cols=279 Identities=23% Similarity=0.252 Sum_probs=253.8
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~-~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|+++|++++ +.+|..|+++|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467999999999876 99999999999999998899999999999999999999999999999999999999876 5578
Q ss_pred HHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
..+...|++++|+.+| ...+..++..|+++|.+|+............++++.|+.+|.++++.++..|+++|.+|+...
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999 567899999999999999987555555556899999999999999999999999999999866
Q ss_pred HHH-HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHH
Q 004806 600 ENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQ 675 (729)
Q Consensus 600 en~-~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~n 675 (729)
..+ ..+++.|+++.|+.+| +.+..++..|+.+|++|+. .+.....+++.|+++.|+.+|.+. ++.++..|+++|.|
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 554 6778899999999999 4678899999999999998 555677888999999999999998 99999999999999
Q ss_pred HhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 676 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 676 L~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|+..++.....+++.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9998888888999999999999999999999999999999998754
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=2.2e-24 Score=219.62 Aligned_cols=240 Identities=26% Similarity=0.345 Sum_probs=223.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~ 563 (729)
|+|+.|+.+|.+++++++..|+++|.+++... .++..+.+.|+++.|+.+|++++.+++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 68999999999999999999999999998765 4889999999999999999999999999999999999997 888999
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc-cCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc-c
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-D 640 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs-~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~-e 640 (729)
+.+.|+++.|+.+|+++++.++..|+++|.||+ ..++++..+++.|+++.|+.++ +.+..++..++++|++|+... +
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5788999999999999999999 467889999999999999854 4
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 641 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+..+.+.|+++.|+.++.+.++.++..|+++|.+|+..++..+..+.+.|+++.|+.+++++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 45888899999999999999999999999999999999888889999999999999999999999999999999999988
Q ss_pred CcCcC
Q 004806 721 QRHGN 725 (729)
Q Consensus 721 ~~~~~ 725 (729)
...+.
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 76554
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.9e-24 Score=220.12 Aligned_cols=237 Identities=29% Similarity=0.385 Sum_probs=221.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I 523 (729)
.++.|++.|+++++++|..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 589999999999999999999999999998888999999999999999999999999999999999999987 7889999
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhc-cCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHEN 601 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS-~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en 601 (729)
.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+|+++++.++..|+++|.||+. .+.+
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 467888889999999999999999999999999999999998 4556
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+..+++.|+++.|+.++ +.+..++..|+.+|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 68899999999999999 4678899999999999998 556678889999999999999999999999999999999987
Q ss_pred CH
Q 004806 680 SS 681 (729)
Q Consensus 680 ~~ 681 (729)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 64
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=2.9e-24 Score=245.91 Aligned_cols=278 Identities=19% Similarity=0.228 Sum_probs=248.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~~ 517 (729)
.+.|+.|+.+|.+++.+++..|+++|.+|+.+++.+|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999999999999999998653 457889999999998875
Q ss_pred cc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch-hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 518 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 518 ~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.. .......++++.|+.+|.+++++++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 43 33444568899999999999999999999999999986554 55667789999999999999999999999999999
Q ss_pred cc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 596 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 596 s~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
+. .+..+..+++.|+++.|+.+| +++..++..|+++|.||+. ..+.+..+.+.|+++.|+.+|.+++..++..|+++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 87 566788899999999999999 4678899999999999998 45567888899999999999999999999999999
Q ss_pred HHHHhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 673 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 673 L~nL~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|.|++.+ +.+.+..+++.|+++.|+.++.+.+++++..+.++|.++-.
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999975 56778889999999999999999999999999998887753
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=3.6e-24 Score=244.20 Aligned_cols=278 Identities=19% Similarity=0.231 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~~ 517 (729)
.+.|+.|+++|++++.+++..|+++|.+++.+++..|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999999999999999999999999998754 457889999999999875
Q ss_pred cc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch-hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 518 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 518 ~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.. .......++++.|+++|.+++.+++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+++|.||
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 43 33344468899999999999999999999999999986554 45567789999999999999999999999999999
Q ss_pred cc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 596 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 596 s~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
+. .+.++..+++.|+++.|+.+| +++..++..|+++|.||+. ..+.+..+.+.|+++.|+.++.+++..++..|+++
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 77 556778899999999999999 4678899999999999998 55667888999999999999999999999999999
Q ss_pred HHHHhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 673 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 673 L~nL~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|.|++.. +.+++..+++.|+++.|+.++.+.+++++..+.++|.++-.
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999986 46678889999999999999999999999999998887643
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=7.3e-24 Score=241.89 Aligned_cols=279 Identities=20% Similarity=0.209 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|+++|+++ ++.+|..|++.|.+++..++.++..+...|+++.|+.+|.+.++.+++.|+++|.+|+.+ +.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46799999999987 899999999999999998888999999999999999999999999999999999999876 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY- 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~- 598 (729)
..+...|+++.|+.+|.+.+..++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88889999999999999989999999999999999865 4445555679999999999999999999999999999975
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
++....+++.|+++.|+.+| +.+..++..|+.+|.+|+.. +.....+++.|+++.|+.+|.+.++.++..|+++|.+|
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46677888999999999999 56788999999999999984 45567788899999999999999999999999999999
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+..++.....+++.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 998888888888999999999999999999999999999998653
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=5.4e-24 Score=242.47 Aligned_cols=277 Identities=19% Similarity=0.180 Sum_probs=250.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhcC-CccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSE-TKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d-~~v~e~Al~aL~nLs~~-~~~k 520 (729)
..++.|++.|.++++++|..|+..|+.++.... .....+...|+++.|+.+|.+++ +.++..|+++|.+|+.+ +.++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999866543 67788889999999999999886 99999999999999876 6788
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~~ 598 (729)
..+++.|+++.|+.+|.++++.++..|+++|.+|+.. +.++..+...|+++.|+.+| .+.+..++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999975 55688888899999999999 567899999999999999987
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r-~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
..........|+++.|+.+| +.+..++..++++|.+|+...+.+ ..+.+.|+++.|+.+|.+.++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 55555556799999999999 467889999999999999866554 6778899999999999999999999999999999
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhc
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~ 720 (729)
+.+.+.....+++.|+++.|+.++.++ ++.+++.|.++|.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999988888999999999999999999 89999999999999975
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=2e-24 Score=221.38 Aligned_cols=235 Identities=22% Similarity=0.323 Sum_probs=215.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I 523 (729)
..+.+++.|+++++++|..|++.|+.+...+..++..+.+.|+|+.|+.+|.+.++.++..|+++|.+|+. ++.++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46889999999999999999999976655577888999999999999999999999999999999999997 57889999
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHEN 601 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en 601 (729)
.+.|+++.|+.+|+++++.++..|+++|.+|+.....+ ..+.+.|+++.|+.+|.+++..++..|+++|.||+. .+++
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999988888 888889999999999999999999999999999998 5567
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+..+++.|+++.|+.+| +++..++..|+++|.+|+. .++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.+
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 78889999999999999 5678899999999999996 566788889999999999999999999999999999999853
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=3.2e-23 Score=229.47 Aligned_cols=276 Identities=21% Similarity=0.224 Sum_probs=249.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 444 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 444 ~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
+.++.|++.|+++ ++++|..|++.|.+++..+.++...+.+.|+++.|+.+|.++++.+++.|+++|.+|+.+ +..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 899999999999999998888888888999999999999999999999999999999876 45788
Q ss_pred HHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCc--chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 522 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
.+.+.|+++.|+.+|.+ .+..++..|+++|.+|+... ..+..+. .++++.|+.+|.+++..++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 67999999999999999753 3333333 79999999999999999999999999999985
Q ss_pred -cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc-hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 599 -HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 599 -~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
++++..++..|+++.|+.+| +.+..++..|+.+|.+|+...+ ....+.+.|+++.|+.+|.+.++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46777888999999999999 5678899999999999998654 45667888999999999999999999999999999
Q ss_pred HhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 676 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 676 L~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
++.+++...+.+++.|+++.|+.++.++++++++.|.++|.+|..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999998864
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=9.8e-24 Score=216.24 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=217.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nL-s~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~ 563 (729)
..++.++.+|.+++++++..|+++|.++ +.++.++..+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5689999999999999999999999775 4456778889999999999999999999999999999999998 6788999
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH-HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cc
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PD 640 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~-~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e 640 (729)
+.+.|+++.|+.+|+++++.++..|+++|.||+..++++ ..+++.|+++.|+.+| +.+..++..|+++|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 8899999999999999 56788999999999999984 46
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 641 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+..++..+..+.+.|+++.|+.++.++++++++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67788899999999999999999999999999999999998889999999999999999999999999999999998864
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=8e-23 Score=226.31 Aligned_cols=277 Identities=20% Similarity=0.211 Sum_probs=247.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCC--cc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIND--NN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~--~~ 519 (729)
.+.++.|++.|++++++++..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999999999888899999999999999999996 68999999999999998653 33
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
+..+. .++++.|+.+|.+++..++..++++|.+|+.. ++.+..+...|+++.|+.+|.+.++.++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 22222 78999999999999999999999999999985 45666777789999999999999999999999999999985
Q ss_pred cH-HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 599 HE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 599 ~e-n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
.+ ....+++.|+++.|+.+| +++..++..|+++|.+|+. .++....+++.++++.|+.+|.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54 456678899999999999 4678899999999999997 56677788889999999999999999999999999999
Q ss_pred HhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 676 LCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 676 L~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
++.. ++.....+++.|+++.|+.++..+++++++.|.++|..|..
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9986 56777788899999999999999999999999999988765
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.3e-22 Score=231.51 Aligned_cols=278 Identities=19% Similarity=0.215 Sum_probs=249.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k~ 521 (729)
.+.++.|++.|++++++++..|++.|.+++..++.++..+...|+++.|+.+|.+.+..++..|+++|.+|+.+. ....
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 356899999999999999999999999999988889999999999999999999999999999999999999764 4445
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-c
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-H 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~ 599 (729)
.....++++.|+.+|.+++..++..|+++|.+|+.. ++....+.+.|+++.|+.+|.+.+..++..|+++|.||+.. +
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 566789999999999999999999999999999975 44566777789999999999999999999999999999974 5
Q ss_pred HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 600 ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
.....+++.|+++.|+.+| +.+..++..|+++|.+|+. ..+....+++.|+++.|+.+|..+++.++..|+++|.+++
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6677788899999999999 4678899999999999997 5566777888999999999999999999999999999999
Q ss_pred hCC-H--hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 678 TNS-S--RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 678 ~~~-~--~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
... + .....+++.|+++.|+.++...+++++..|.++|..|-.
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 864 3 677888899999999999999999999999999987754
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=3.6e-22 Score=226.01 Aligned_cols=278 Identities=21% Similarity=0.222 Sum_probs=240.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.++.|+++|+++++.+|..|+..|.+++.+. .++..+... |+++.|+.+|.+ ++++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 467999999999999999999999999999854 577666654 999999999975 48999999999999999988899
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +..+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. +
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999986 5667788889999999999999999999999999999987 5
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHH---------------------
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV--------------------- 655 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv--------------------- 655 (729)
++++..+++.|+++.|+.+|. ........++.+|.+|+.+++.+..+.+.|+++.|+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 788888899999999999883 445666778888999988888888887777665554
Q ss_pred ------------------HHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHHHHHHHHHHH
Q 004806 656 ------------------EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 715 (729)
Q Consensus 656 ------------------~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~A~~lL 715 (729)
++|.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++... .+.+++.|..+|
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445556778888899999999988888899999999999999999863 379999999999
Q ss_pred HHhhcC
Q 004806 716 SYFRNQ 721 (729)
Q Consensus 716 ~~L~~~ 721 (729)
.+|...
T Consensus 335 ~nl~~~ 340 (529)
T 1jdh_A 335 RHLTSR 340 (529)
T ss_dssp HHHTSS
T ss_pred HHHHcC
Confidence 998653
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=6.5e-22 Score=223.91 Aligned_cols=278 Identities=23% Similarity=0.249 Sum_probs=243.2
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|++.|.++ +++++..|+..|++|+.. ++++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999754 899999999999999985 56999999999999999999999999999999999999876 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~-~~v~~~Al~aL~nLs~~ 598 (729)
..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +++++..+++.|+++.|+.+|++++ ...+..++.+|.||+..
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999998 5788899999999999999999774 55667788899999999
Q ss_pred cHHHHHHHHcCcHHHHHHhcC----------------------------------------CCHHHHHHHHHHHHHHhCC
Q 004806 599 HENKARIVQAGAVKHLVDLMD----------------------------------------PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~----------------------------------------~~~~v~e~Al~~L~nLa~~ 638 (729)
++++..+++.|+++.|+.++. .+..++..++++|++|+..
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 999999999998887776652 3455667788888888875
Q ss_pred -cchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHh---hHHHHHhCCCHHHHHHhhhCCC-HHHHHHH
Q 004806 639 -PDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGT-PRAKEKA 711 (729)
Q Consensus 639 -~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~---~~~~vl~~G~v~~Lv~Ll~sg~-~rvr~~A 711 (729)
++.+..+.+.|+++.|+++|.. .++.+++.|+.+|++|+..++. .+..+.+.|+++.|+.++.++. +.+++.|
T Consensus 297 ~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 4678889999999999999975 3489999999999999987543 5678889999999999999987 6999999
Q ss_pred HHHHHHhhcC
Q 004806 712 QALLSYFRNQ 721 (729)
Q Consensus 712 ~~lL~~L~~~ 721 (729)
.++|+++...
T Consensus 377 ~~~l~nl~~~ 386 (529)
T 1jdh_A 377 VGLIRNLALC 386 (529)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=5.7e-22 Score=232.02 Aligned_cols=277 Identities=21% Similarity=0.212 Sum_probs=245.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.++.|+++|+++++.+|..|+..|.+|+.+. .++..+... |+++.|+.+|.+. +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 467899999999999999999999999999976 577777654 9999999999875 8999999999999999988899
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+.+.|+++.|+.+|+++++.++..|+.+|.+|+.. +..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985 5667778889999999999999999999999999999996 7
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHH-------------------
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV------------------- 657 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~l------------------- 657 (729)
++++..+++.|+++.|+.+|. ....++..++.+|.+|+.+++.+..+++.|+++.|+.+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999994 34667788999999999999999999888877666554
Q ss_pred --------------------HccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-C-HHHHHHHHHHH
Q 004806 658 --------------------VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-T-PRAKEKAQALL 715 (729)
Q Consensus 658 --------------------L~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~-~rvr~~A~~lL 715 (729)
|.+.++.+++.|+++|.+|+.+++..+..+++.|+++.|+.++... + +.++..|..+|
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 4456777888888888888888888889999999999999999873 3 79999999999
Q ss_pred HHhhc
Q 004806 716 SYFRN 720 (729)
Q Consensus 716 ~~L~~ 720 (729)
.+|..
T Consensus 332 ~nL~~ 336 (644)
T 2z6h_A 332 RHLTS 336 (644)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 99964
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=206.72 Aligned_cols=195 Identities=20% Similarity=0.236 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCcc
Q 004806 443 ETQVRKLVEDLKSTSL--DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~--evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~ 519 (729)
...++.||++|+++++ ++|..|+..|++|++.++.+|..+.+.|+||.|+.+|.++++++|+.|+++|.||+. ++++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3568999999999887 889999999999999999999999999999999999999999999999999999997 5789
Q ss_pred HHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----------------CCCH
Q 004806 520 KSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----------------NGTP 582 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----------------~~~~ 582 (729)
|..|++.|+|++|+++|+ +++.+++++|+.+|||||..+++|..|++ +++++|++++. ..+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 57899999999999999999999999986 57999998763 1256
Q ss_pred HHHHHHHHHHHhccc-CcHHHHHHHHc-CcHHHHHHhcC-------CCHHHHHHHHHHHHHHhCC
Q 004806 583 RGKKDAATALFNLSI-YHENKARIVQA-GAVKHLVDLMD-------PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~-~~en~~~lv~~-G~V~~Lv~LL~-------~~~~v~e~Al~~L~nLa~~ 638 (729)
.++..|..+|+||+. ++++|..|.+. |+|+.|+.+++ .+...++.|+.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999988 56899999985 78999999982 3567899999999999974
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=2.8e-21 Score=226.17 Aligned_cols=278 Identities=23% Similarity=0.247 Sum_probs=243.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|++.|.++ +.+++..|+..|+.|+.. .+++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999865 899999999999999996 46999999999999999999999999999999999999876 5677
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~-~~v~~~Al~aL~nLs~~ 598 (729)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..+++.|+++.|+.+|++.+ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999999999999999997 7888999999999999999999874 67788999999999999
Q ss_pred cHHHHHHHHcCcHHHHHHhcC----------------------------------------CCHHHHHHHHHHHHHHhCC
Q 004806 599 HENKARIVQAGAVKHLVDLMD----------------------------------------PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~----------------------------------------~~~~v~e~Al~~L~nLa~~ 638 (729)
++++..+++.|+++.|+.++. .+..+++.|+++|.+|+..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999998888877652 3455667778888888774
Q ss_pred -cchHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCH---hhHHHHHhCCCHHHHHHhhhCCC-HHHHHHH
Q 004806 639 -PDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSS---RFCSMVLQEGAVPPLVALSQSGT-PRAKEKA 711 (729)
Q Consensus 639 -~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~nL~~~~~---~~~~~vl~~G~v~~Lv~Ll~sg~-~rvr~~A 711 (729)
++.+..+.+.|+++.|+.+|... .+.+++.|+++|.+|+...+ ..+..++..|+++.|+.++.+.. +.+++.|
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 46688888999999999999863 37999999999999998654 34556888999999999999886 7999999
Q ss_pred HHHHHHhhcC
Q 004806 712 QALLSYFRNQ 721 (729)
Q Consensus 712 ~~lL~~L~~~ 721 (729)
.++|.+|...
T Consensus 374 ~~~L~nLa~~ 383 (644)
T 2z6h_A 374 VGLIRNLALC 383 (644)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHccC
Confidence 9999998764
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=1.8e-20 Score=224.26 Aligned_cols=277 Identities=21% Similarity=0.240 Sum_probs=239.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.++.|+++|.+.++.+|..|+..|..|+... .++..+... |+++.|+.+|.+. ++.++..|+.+|.+|+.++.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 678999999999999999999999999999954 567777754 8999999999764 8999999999999999988889
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+.+.|+|+.|+.+|+++++.++..|+++|.+|+.. +..+..+.+.|+++.|+.+|.+.+..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999986 5667777788999999999999999999999999999986 5
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH----------------------
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL---------------------- 654 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L---------------------- 654 (729)
++++..+++.|+++.|+.+|. ......+.++.+|.+|+.+.+.+..+++.|+++.|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 788888888899999999884 33455667888888888887777777766655544
Q ss_pred -----------------HHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC-CC-HHHHHHHHHHH
Q 004806 655 -----------------VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GT-PRAKEKAQALL 715 (729)
Q Consensus 655 -----------------v~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s-g~-~rvr~~A~~lL 715 (729)
+.+|.+.++.+++.|+++|.+|+.+++..+..+++.|+++.|+.++.. ++ +.++..|..+|
T Consensus 388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445556678888999999999999888888999999999999999986 33 58999999999
Q ss_pred HHhhc
Q 004806 716 SYFRN 720 (729)
Q Consensus 716 ~~L~~ 720 (729)
.+|..
T Consensus 468 ~nL~~ 472 (780)
T 2z6g_A 468 RHLTS 472 (780)
T ss_dssp HHTTS
T ss_pred HHHHh
Confidence 99865
No 31
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.87 E-value=1.5e-22 Score=197.66 Aligned_cols=96 Identities=29% Similarity=0.467 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 107 EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+.++++..++.++.+. .....+|++|+||||+++|+|||+++|||||||.||++||..++.+||+||++++
T Consensus 82 ~~i~~~~~l~~~~~~~---------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 82 KYLMDMDELFSQVDEK---------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHG---------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHhhh---------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3455566665554331 1345689999999999999999999999999999999999886568999999999
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 187 HTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 187 ~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
..+|+||+.|+++|+.|+..|||.+
T Consensus 153 ~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 153 QDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp GGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred hhhCcchHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999999999964
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=1.7e-20 Score=186.96 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~ 521 (729)
.+..+.|+.+|++.++++|..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.+++.|+++|.||+. ++.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3567899999999999999999999999998899999999999999999999999999999999999999985 567888
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-c
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-H 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~ 599 (729)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+.+|++++..++..|+++|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999974 55567788899999999999999999999999999999986 7
Q ss_pred HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 600 ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
+++..+++.|+++.|+.++ +.+..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 8888899999999999999 57789999999999999863
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2e-20 Score=218.14 Aligned_cols=280 Identities=16% Similarity=0.154 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh--------------------------------------hhHHHH
Q 004806 442 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNM--------------------------------------DNRMVI 482 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~--------------------------------------~nr~~I 482 (729)
..+.++.|++.++. .+..+...++..|.+|+...+ .++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 36778889999984 666778888888888887432 156778
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHH---HHHHHHHHHHHhccCcc
Q 004806 483 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE---ARENAAATLFSLSVIED 559 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e---~r~~Aa~aL~nLS~~~e 559 (729)
.++|+|+.|+.++.+.++.+++.|+++|.||+.++.+|..+++.|++++|+.+|.++... .+.+|+.+|.+|+...+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999988755 89999999999997666
Q ss_pred hhhhhhc---cCcHHHHHHhhcC--CCH------------HHHHHHHHHHHhcccCc-----HHHHHHHHc-CcHHHHHH
Q 004806 560 NKIKIGR---SGAIGPLVDLLGN--GTP------------RGKKDAATALFNLSIYH-----ENKARIVQA-GAVKHLVD 616 (729)
Q Consensus 560 ~k~~I~~---~g~I~~Lv~LL~~--~~~------------~v~~~Al~aL~nLs~~~-----en~~~lv~~-G~V~~Lv~ 616 (729)
....+.. .|+|++|+.||.. +.. .-+..|+.||.||+..+ +.+.++++. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 5554432 3999999999983 211 23779999999999976 347889995 99999999
Q ss_pred hc-CCCHHHHHHHHHHHHHHhCCcchH-HHHHhCC------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 004806 617 LM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQEN------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 688 (729)
Q Consensus 617 LL-~~~~~v~e~Al~~L~nLa~~~e~r-~~i~~~g------~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl 688 (729)
+| +.+..++..|+.+|.||+.+++++ +.+.+.+ .++.|+.++.+++...+..|+++|.+++..++..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 99 567788899999999999998886 3554322 388999999999999999999999999988887888888
Q ss_pred hC-CCHHHHHHhhhC--CCHHHHHHHHHHHHHhhcC
Q 004806 689 QE-GAVPPLVALSQS--GTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 689 ~~-G~v~~Lv~Ll~s--g~~rvr~~A~~lL~~L~~~ 721 (729)
+. ++++.|+.+++. +++.++..+..++.+|...
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 87 799999999999 7899999999999999874
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=198.00 Aligned_cols=192 Identities=20% Similarity=0.247 Sum_probs=173.1
Q ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhh
Q 004806 487 AINILVDMLHSSET--KIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKI 562 (729)
Q Consensus 487 aI~~Lv~LL~s~d~--~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~ 562 (729)
.++.|+.+|.++++ +++..|+++|.+|+. ++.++..|.+.|+||+|+.+|+++++++++.|+++|.||+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 899999999999985 57789999999999999999999999999999999999998 588999
Q ss_pred hhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-----------------CCHHH
Q 004806 563 KIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-----------------PAAGM 624 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-----------------~~~~v 624 (729)
.|++.|+|+.|+++|+ .++..+++.|+.+|+||+..++++..+++. +++.|+.++. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 579999999999999999999999999875 6999998751 14578
Q ss_pred HHHHHHHHHHHhC-CcchHHHHHhC-CcHHHHHHHHccC------CHHHHHHHHHHHHHHhhC
Q 004806 625 VDKAVAVLANLAT-IPDGRVAIGQE-NGIPVLVEVVELG------SARGKENAAAALLQLCTN 679 (729)
Q Consensus 625 ~e~Al~~L~nLa~-~~e~r~~i~~~-g~I~~Lv~lL~s~------s~~~ke~A~~aL~nL~~~ 679 (729)
.+.|.++|.||+. ++++|..|.+. |+|+.|+.+++.. +...+|+|+.+|+||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999998 56999999986 5689999999752 568999999999999975
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=2.8e-20 Score=222.64 Aligned_cols=271 Identities=19% Similarity=0.217 Sum_probs=229.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..++.+++.|.+++.+++..++..|+.. ++..+. .|+|+.|+.+|.+.++.+++.|+.+|.+|+.+..++..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3578999999999888888888888744 344554 799999999999999999999999999999887778777
Q ss_pred Hhc-CCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cH
Q 004806 524 ANA-NAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE 600 (729)
Q Consensus 524 ~~~-g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~e 600 (729)
... |+++.|+++|+++ +++++.+|+.+|.+|+...+++..+++.|+|+.|+.+|+++++.++..|+++|.||+.. ..
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 754 8999999999866 79999999999999999988899999999999999999999999999999999999985 56
Q ss_pred HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCC-HHHHHHHHHHHHHHh
Q 004806 601 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAALLQLC 677 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~A~~aL~nL~ 677 (729)
.+..+++.|+++.|+.+| +.+..+...++.+|.+|+. +++++..+.+.++++.|+.+|+..+ ...++.|+.+|++|+
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 677777899999999999 4667888899999999997 6788999999999999999998764 556778999999999
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
.. ...+..+++.|+++.|+.++.++++.+++.|.++|..|....
T Consensus 348 ~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 348 VC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp TS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred cC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 75 457889999999999999999999999999999999887643
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=3.5e-20 Score=184.63 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=180.1
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHH
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENK 602 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~ 602 (729)
..++.+.|+.+|.+.+++++..|+++|.+|+. .++.+..+.+.|+++.|+.+|+++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35789999999999999999999999999995 67778889999999999999999999999999999999995 67889
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
..+++.|+++.|+.+| +.+..++..|+++|.||+. .++.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 4678899999999999997 5556678889999999999999999999999999999999998
Q ss_pred HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 681 ~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+..+..+.+.|+++.|+.++.++++.+++.|.++|..|..
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999998864
No 37
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.85 E-value=1.2e-21 Score=173.79 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=72.0
Q ss_pred CCCCCCCcccccCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
....+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||+||++|+..+|+||+.|+++|+.|+.++++.
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 345689999999999999999999999 99999999999987 468999999999999999999999999999999875
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.85 E-value=6.1e-22 Score=171.23 Aligned_cols=76 Identities=30% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 209 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~ 209 (729)
+...+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+||++++..+|+||..|+++|+.|+.+|+.
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 34568999999999999999999999999999999999996 46899999999999999999999999999998753
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.84 E-value=1.2e-21 Score=174.37 Aligned_cols=75 Identities=32% Similarity=0.406 Sum_probs=70.3
Q ss_pred CCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 208 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~ 208 (729)
....+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+||++++..+|+||+.|+++|+.|+.+|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 5789999999999999999999999999999885
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.4e-18 Score=202.66 Aligned_cols=276 Identities=14% Similarity=0.149 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCc-
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDN- 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~- 518 (729)
+...++.++++|..++.+.+..|+..|..++.+ ++.|..+++. |+++.|+.+++. .+..+...++.+|.||+.+.+
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 356788899999888777799999999999985 5788888775 889999999995 788899999999999976321
Q ss_pred --------------------------------------cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch
Q 004806 519 --------------------------------------NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 560 (729)
Q Consensus 519 --------------------------------------~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~ 560 (729)
++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 345567789999999999999999999999999999999999
Q ss_pred hhhhhccCcHHHHHHhhcCCCHH---HHHHHHHHHHhcccCcHHHHHHHH---cCcHHHHHHhcC--CCH----------
Q 004806 561 KIKIGRSGAIGPLVDLLGNGTPR---GKKDAATALFNLSIYHENKARIVQ---AGAVKHLVDLMD--PAA---------- 622 (729)
Q Consensus 561 k~~I~~~g~I~~Lv~LL~~~~~~---v~~~Al~aL~nLs~~~en~~~lv~---~G~V~~Lv~LL~--~~~---------- 622 (729)
|..+++.|+++.|+.+|.++... ++..|+.||.+|+...+....+-. .|+|+.|+.||. +..
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999988644 899999999999875444333311 499999999996 221
Q ss_pred ---HHHHHHHHHHHHHhCCc-----chHHHHHhC-CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH-HHHHhCC-
Q 004806 623 ---GMVDKAVAVLANLATIP-----DGRVAIGQE-NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC-SMVLQEG- 691 (729)
Q Consensus 623 ---~v~e~Al~~L~nLa~~~-----e~r~~i~~~-g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~-~~vl~~G- 691 (729)
-....|+.+|.|||..+ +.|..++.. |+++.|..+|.+.+..++..|+++|.||+.+.. .+ +.+...+
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~ 649 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLEN 649 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSS
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcC
Confidence 12568999999999976 347888885 999999999999999999999999999998543 32 2333222
Q ss_pred -----CHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 692 -----AVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 692 -----~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
.++.|+.|+..++.++|+.|.++|.++.
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999984
No 41
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.79 E-value=1.1e-19 Score=213.76 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=102.1
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 004806 50 IKEAIRDQVDGVAPSSEILVKVAESL----SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVM 125 (729)
Q Consensus 50 i~~~~~~~~~~~~~~~~~~~~i~~~l----~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (729)
|.++++ |||+|+.+.|.+++..+ |+.+...+ .++..+.+.+++++...+++|.+.
T Consensus 827 ~~aVa~---DgRSy~~elF~~a~~il~~~~~l~~~~~i-~~~~~l~~~~~~~~~~~~~~e~~~----------------- 885 (968)
T 3m62_A 827 ISAVAK---DERSFNRNLFVRAVDILGRKTGLASPEFI-EKLLNFANKAEEQRKADEEEDLEY----------------- 885 (968)
T ss_dssp HHHHHH---CTTTCCHHHHHHHHHHHTTSTTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHh---cCCCCCHHHHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhhccc-----------------
Confidence 444444 47889999999777655 46666666 566666665655443332222222
Q ss_pred HhhhccCCCCCCCCcccccCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 004806 126 IKQSQICSPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 204 (729)
Q Consensus 126 ~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~ 204 (729)
.++|++|+|||++++|+|||++|+| +||||.+|++|+.. +.+||+||++|+..+++||++||+.|++||
T Consensus 886 ---------~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 ---------GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp ---------CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ---------cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 2499999999999999999999998 79999999999987 468999999999999999999999999999
Q ss_pred HHcCC
Q 004806 205 ELNNV 209 (729)
Q Consensus 205 ~~~~~ 209 (729)
.+++.
T Consensus 956 ~~~~~ 960 (968)
T 3m62_A 956 KQKKE 960 (968)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99864
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.79 E-value=8.6e-20 Score=154.82 Aligned_cols=76 Identities=57% Similarity=1.055 Sum_probs=72.0
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
..+|++|.||||+++|+|||+++|||+||+.||.+|+..+..+||.||+++...++.||..|+++|+.|+++|++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4589999999999999999999999999999999999987788999999999999999999999999999999873
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=9.3e-18 Score=178.16 Aligned_cols=222 Identities=19% Similarity=0.148 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhh
Q 004806 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL 577 (729)
Q Consensus 500 ~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~-lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL 577 (729)
.+-+..|+..|.+++.+.++...+...|++++|+. +|.++++.++..|+++|.+++.+ +..+..+++.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678889999999988788888999999999999 99999999999999999999984 66788899999999999999
Q ss_pred cCC-CHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHH
Q 004806 578 GNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPV 653 (729)
Q Consensus 578 ~~~-~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~ 653 (729)
++. +..+++.|+++|.||+. ++.+...+++.|+++.|+.+| +.+..++..|+++|.+|+. .++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 88999999999999997 456677899999999999999 5788999999999999987 5778999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC-CCH-HHH---HHhhh-CC-CHHHHHHHHHHHHHhhcC
Q 004806 654 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE-GAV-PPL---VALSQ-SG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 654 Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~-G~v-~~L---v~Ll~-sg-~~rvr~~A~~lL~~L~~~ 721 (729)
|+.+|.+.+..+++.|+.+|.+|+...+......... ..+ ..| .+-++ .. +..+.++|..+|..+-..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999866443333221 112 211 23344 23 467888999999877643
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=3.3e-19 Score=187.05 Aligned_cols=80 Identities=33% Similarity=0.466 Sum_probs=75.1
Q ss_pred CCCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 132 CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 132 ~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
....++|++|.||||+++|+|||+++|||||||.||++||..++.+||+||++++..+|+||..|+++|+.|+.+|||.+
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999999876779999999999999999999999999999999864
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=1.7e-17 Score=176.05 Aligned_cols=182 Identities=21% Similarity=0.212 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHh
Q 004806 540 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 617 (729)
Q Consensus 540 ~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~L 617 (729)
+.+.+..|+..|.+++.+.++...+...|+++.|+. +|.++++.++..|+++|.|++. ++.++..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999998889888998999999999 9999999999999999999987 56788899999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHH
Q 004806 618 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 694 (729)
Q Consensus 618 L~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~ 694 (729)
|. ++..++..|+++|.||+. ++.+...+.+.|+++.|+.+|.+++..++..|+|+|.+|+.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 94 467899999999999997 556678899999999999999999999999999999999999888999999999999
Q ss_pred HHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 695 PLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 695 ~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.|+.++.++++.+++.|..+|.+|...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999888654
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-19 Score=154.05 Aligned_cols=74 Identities=28% Similarity=0.443 Sum_probs=65.8
Q ss_pred CCCcccccCccccccCceecC-CCccccHHHHHHHHhcC-----CCCCCCCCc--c-CCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-----LFVCPKTRQ--T-LAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-----~~~cP~t~~--~-l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
.+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+|+. . ++..+|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 688999999999999999996 99999999999999864 357999544 4 88899999999999999999887
Q ss_pred CCC
Q 004806 208 NVK 210 (729)
Q Consensus 208 ~~~ 210 (729)
+-.
T Consensus 84 ~r~ 86 (94)
T 2yu4_A 84 HRH 86 (94)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=134.73 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=69.0
Q ss_pred CCCCCCcccccCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCccC-CCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTL-AHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l-~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
...++++|.||||+++|.|||+++ |||+||+.||.+||... ..+||.||+++ ....+.||..|+++|+.|...+++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 446889999999999999999999 99999999999999754 46799999997 5679999999999999999987653
No 48
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.59 E-value=2.8e-16 Score=126.72 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=50.1
Q ss_pred cccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 004806 140 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 194 (729)
.|+||||+++|+|||++ +|||+|||.+|++|+..+ .+||+||++|+.++|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999999 999999999999999875 4699999999999999985
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=9.3e-15 Score=135.04 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=64.0
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANWCEL 206 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~I~~~~~~ 206 (729)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++.. ..+.||..|+++|+.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 467799999999999999999999999999999999766689999999987 7899999999999998643
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.3e-14 Score=146.18 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTVKALIANWCEL 206 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l~~~I~~~~~~ 206 (729)
...+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++++...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 46789999999999999985 999999999999999874 346999 99999999999999999999999764
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.46 E-value=4.2e-12 Score=144.92 Aligned_cols=272 Identities=20% Similarity=0.233 Sum_probs=215.6
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhc-CCc
Q 004806 443 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSI-NDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~-~~~ 518 (729)
...|+.|++.+.+ .-.+.++.|+..|+.+++. .+..+ ..++++.|+..|+. .|.++...++.+|.++.. +++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 6789999999984 4678899999999999884 44443 35789999999976 488999999999988743 221
Q ss_pred c-----------------HHH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--chhhhhhcc-CcHHHHHHhh
Q 004806 519 N-----------------KSA-IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRS-GAIGPLVDLL 577 (729)
Q Consensus 519 ~-----------------k~~-I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~--e~k~~I~~~-g~I~~Lv~LL 577 (729)
. ... +.+.+.|+.|+.+|++.+..+|.+++.+|..|+... .++..|... ++|+.|+++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 112 234589999999999999999999999999998743 367778754 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCc-chHHHHHhCCc
Q 004806 578 GNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIP-DGRVAIGQENG 650 (729)
Q Consensus 578 ~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~ 650 (729)
.+....++..|+.+|.+|+....+.++++. +|+++.|+.++. ....++..++.+|.||...+ .++..+.+.++
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999998888888777 699999999993 23467899999999999954 57888889999
Q ss_pred HHHHHHHHccCCH------HHHHH---HHHHHHHHhhCC------HhhHHHHHhCCCHHHHHHhhhCCC--HHHHHHHHH
Q 004806 651 IPVLVEVVELGSA------RGKEN---AAAALLQLCTNS------SRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQA 713 (729)
Q Consensus 651 I~~Lv~lL~s~s~------~~ke~---A~~aL~nL~~~~------~~~~~~vl~~G~v~~Lv~Ll~sg~--~rvr~~A~~ 713 (729)
++.|..+|..+.+ ....+ +..++.-|+..+ ..++..+.+.|+++.|++++.... ..++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999875422 12233 566666676652 357788999999999999988753 567777776
Q ss_pred HHHHh
Q 004806 714 LLSYF 718 (729)
Q Consensus 714 lL~~L 718 (729)
++.-+
T Consensus 336 tla~~ 340 (651)
T 3grl_A 336 TVSEV 340 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.46 E-value=2.7e-14 Score=136.37 Aligned_cols=69 Identities=22% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC-CCcccHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVKALIANWCE 205 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~pN~~l~~~I~~~~~ 205 (729)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++... .+.+|..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999998766899999999987 89999999999999873
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=9.3e-14 Score=123.08 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=64.2
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+++++.||||++.|.|||++ +|||+||+.||.+|+..+ .+||.||.++...++.||..|+++|+.|.+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 35678999999999999998 899999999999999865 67999999999889999999999999998764
No 54
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.37 E-value=5.7e-11 Score=135.68 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=215.2
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChh-----------------hH-HHHHhcCcHHHHHHHHcCCCHHH
Q 004806 443 ETQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMD-----------------NR-MVIANCGAINILVDMLHSSETKI 502 (729)
Q Consensus 443 ~~~V~~Lv~~L~s--~~~evq~~Al~~L~~La~~s~~-----------------nr-~~I~~~GaI~~Lv~LL~s~d~~v 502 (729)
...++.|+.-|+. .+.++-..++..|.++...++. +. ..+.+.+.|+.|+.+|++.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4568888888885 4677778888888766554322 11 23445689999999999999999
Q ss_pred HHHHHHHHHHhhcC-Cc-cHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhc
Q 004806 503 QENAVTALLNLSIN-DN-NKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG 578 (729)
Q Consensus 503 ~e~Al~aL~nLs~~-~~-~k~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~ 578 (729)
+..++.+|..|+.+ +. .+..|... ++|+.|+.+|++....+|-.++.+|.+|+.. .+.++.+...|+++.|+++++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999765 33 67778855 9999999999999999999999999999985 455666666799999999998
Q ss_pred CCC----HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcCCC--H------HH--HHHHHHHHHHHhCCc----
Q 004806 579 NGT----PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPA--A------GM--VDKAVAVLANLATIP---- 639 (729)
Q Consensus 579 ~~~----~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~~~--~------~v--~e~Al~~L~nLa~~~---- 639 (729)
.+. ..+..+|+.+|.||.. +..|+..+.+.|+++.|..+|+.+ . .+ +..++.++..|+...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 653 3788899999999988 556899999999999999998411 1 22 223677777777631
Q ss_pred ---chHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCHhhHHHHHhCC-----CHHH----HHHhhhCCC-
Q 004806 640 ---DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQEG-----AVPP----LVALSQSGT- 704 (729)
Q Consensus 640 ---e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G-----~v~~----Lv~Ll~sg~- 704 (729)
.++.++.+.|++..|++++.+. ...++..|+.++..++++++..++.+.+.. ..+. |+.++.+..
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 3477889999999999999764 788999999999999999998888887643 2233 333454444
Q ss_pred HHHHHHHHHHHHHhh
Q 004806 705 PRAKEKAQALLSYFR 719 (729)
Q Consensus 705 ~rvr~~A~~lL~~L~ 719 (729)
..+|-.|..+++.+-
T Consensus 379 ~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 379 FVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677877777777663
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=120.45 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=64.5
Q ss_pred CCCcccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+.++|.||||+++|.+||+ ++|||+||+.||.+|+.....+||.||.++...++++|+.+..+++...+..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4567899999999999999 9999999999999999987668999999999999999999999988876654
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=3.7e-13 Score=121.14 Aligned_cols=67 Identities=12% Similarity=0.313 Sum_probs=61.4
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANWC 204 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~I~~~~ 204 (729)
+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.||.++... .+.+|..|+++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 57889999999999999998 999999999999999876 6799999999876 7889999999999874
No 57
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=1.9e-12 Score=121.79 Aligned_cols=64 Identities=14% Similarity=0.375 Sum_probs=53.0
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 204 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~ 204 (729)
.++|.||||++.|.|||+++|||+||+.||.+|+... .+||+||+++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 4568999999999999999999999999999999865 6799999998653 34566666666554
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=3.1e-14 Score=120.47 Aligned_cols=65 Identities=23% Similarity=0.431 Sum_probs=57.8
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcC------CCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG------LFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~------~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
.+.+++.||||++.|.+||+++|||+||+.||.+|+... ..+||.||+++...++.||+.|+++|
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 467899999999999999999999999999999999863 46799999999999999998776543
No 59
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.7e-13 Score=117.29 Aligned_cols=66 Identities=27% Similarity=0.466 Sum_probs=58.2
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcC-----CCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
..+.++|.||||++.|.+||+++|||+||+.||.+|+... ...||.||+++...++.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 3467899999999999999999999999999999999873 46799999999999999998766543
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.33 E-value=4.6e-13 Score=122.61 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=63.1
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++...++.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 57889999999999999999999999999999999988766899999999999999999999988865
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=4.9e-13 Score=122.21 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+.++|.||||+++|.+||++ +|||+||+.||.+|+. ..||.||.++...++.||+.|+++|+.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 35679999999999999999 9999999999999998 56999999999899999999999999997654
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.31 E-value=7e-13 Score=128.57 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=61.9
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCC-CCCCcccHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLA-HTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~-~~~l~pN~~l~~~I~~~~~ 205 (729)
+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.||.++. ...+.||..|+++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999998 999999999999999986778999999985 4679999999999999854
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.4e-13 Score=116.36 Aligned_cols=66 Identities=26% Similarity=0.530 Sum_probs=58.1
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhc-----CCCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL-----GLFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
..+.+++.||||++.|.+||+++|||+||+.||.+|+.. +...||.||+++...++.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 346789999999999999999999999999999999986 346799999999999999998766543
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.2e-13 Score=112.19 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
...+++.||||++.|.+||+++|||+||+.||.+|+... .+||.||+++. ..+.||..+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 456789999999999999999999999999999999864 57999999997 68889966655544
No 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.30 E-value=4.2e-13 Score=122.14 Aligned_cols=69 Identities=17% Similarity=0.400 Sum_probs=62.3
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC-------CCCcccHHHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-------TTLIPNYTVKALIANWC 204 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-------~~l~pN~~l~~~I~~~~ 204 (729)
...++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||+++.. .++.+|..|..+|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456899999999999999999999999999999998767789999999864 67889999999999985
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=108.65 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=51.1
Q ss_pred CCCCCCcccccCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCccCC-CCCCccc
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLA-HTTLIPN 193 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~-~~~l~pN 193 (729)
...+++++.||||+++|.|||+++ |||+||+.||.+|+... ..+||+||+++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345789999999999999999999 99999999999999864 357999999854 4566666
No 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.3e-12 Score=118.11 Aligned_cols=68 Identities=18% Similarity=0.377 Sum_probs=60.0
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
.+++.||||++.|.+||+++|||+||+.||.+|+.... .+||.||+++...++.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 45688999999999999999999999999999998643 479999999999999999887777777754
No 68
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=105.07 Aligned_cols=56 Identities=7% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
..+++++.||||++.|++||+++|||+||+.||.+|+..+..+||.||+++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34678999999999999999999999999999999997666789999999887654
No 69
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.26 E-value=4.2e-10 Score=116.92 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 357899999999999999999999988752 2478999999999999999999999998864332111
Q ss_pred HhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 524 ANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 524 ~~~g~I~~Lv-~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..++.|. .++.+.++.++..++.+|..+..... .....+++.|+.+|.++++.++..|+.+|.++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1223333 24567889999999999998863211 1123568888999999999999999999998743
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.++++.|+.++ +++..++..|+.+|..+.... ..+++.|+.++...++.++..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 35888899988 567788888999998875321 1346788888888888899999988888752
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
..+++.|+.++.+++ ++..|...|..+
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 134555555555433 444555554444
No 70
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.4e-12 Score=103.78 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCCCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 135 VPIPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
..+.+++.||||++.|.|||++ +|||+||+.||.+|+... .+||.||+++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCccccccc
Confidence 3467899999999999999997 999999999999999874 679999999999888876
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=5.1e-10 Score=111.21 Aligned_cols=188 Identities=22% Similarity=0.249 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 4678999999999999999999999987643 368999999999999999999999998874
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..+.++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.++++.++..|+.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 23678999999999999999999999998742 4689999999999999999999999999743
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
..+++.|+.++ +++..++..++.+|..+.. ..+++.|..++...++.++..|+.+|.++.....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 35788999999 5678889999999999853 3457889999999999999999999998877654
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=5.9e-10 Score=110.80 Aligned_cols=188 Identities=22% Similarity=0.255 Sum_probs=158.7
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4689999999999999999999999988742 368999999999999999999999998874
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHH
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
..++++.|+.+|.+.++.++..|+.+|.++.. .++++.|+.++ +++..++..|+.+|+.+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24789999999999999999999999998743 35788999998 5778899999999999853
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 644 ~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
...++.|..++...++.++..|+.+|..+.. ..+++.|..+++++++.+|..|...|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478999999999999999999999998843 2357889999999999999999999998877543
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=1.1e-09 Score=107.81 Aligned_cols=184 Identities=22% Similarity=0.245 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
....+.+++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 5678999999999999999999999987643 3579999999999999999999999988742
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3678999999999999999999999998742 4689999999999999999999999998742
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
..+++.|+.++ +++..++..|+.+|..+.. ..+++.|..++...++.++..|+.+|..+-
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46888999999 5678889999999999842 236888999999999999999999998754
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.20 E-value=6.1e-12 Score=122.49 Aligned_cols=67 Identities=27% Similarity=0.459 Sum_probs=62.3
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~ 202 (729)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++...++.||..+++.|..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 5789999999999999999999999999999999998766689999999999999999999888875
No 75
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=102.97 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=49.4
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCCCccCCCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l 190 (729)
..+++++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.||+++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 347789999999999999999999999999999999973 44579999999887654
No 76
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.19 E-value=6e-12 Score=114.67 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=56.6
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIAN 202 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~I~~ 202 (729)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.||.++...++. ++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567899999999999999999999999999999998667899999999887776 45666666644
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=1.6e-09 Score=106.75 Aligned_cols=184 Identities=22% Similarity=0.253 Sum_probs=158.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
+..+.++.+|.++++.++..|+.+|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 678899999999999999999999988742 367999999999999999999999998763
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 566 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
...+++.|+.+|.+.++.++..|+++|.++.. ..+++.|+.++ +++..++..|+.+|+.+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 24689999999999999999999999998743 34788899998 5778899999999998853
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
...++.|..++...++.++..|+.+|..+.. + .+++.|..++.++++.+|..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999998832 2 268889999999999999999999988764
No 78
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=1.2e-11 Score=100.68 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=50.3
Q ss_pred CcccccCccc-cccCc----eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 139 SDFCCPLSLE-LMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 139 ~~f~CpI~~~-lm~dP----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
+++.||||++ .|.+| |+++|||+||+.||.+|+..+...||.||+++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 5789999999999999998776789999999999888876
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=3.8e-12 Score=120.20 Aligned_cols=67 Identities=10% Similarity=0.283 Sum_probs=57.8
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC---------CCCCcccHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA---------HTTLIPNYTVKALIAN 202 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~---------~~~l~pN~~l~~~I~~ 202 (729)
.++++|.||||+++|++||+++|||+||+.||.+|+..+..+||.||.++. ...+.|+..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 478899999999999999999999999999999999877668999998753 2356688888888763
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5e-11 Score=96.27 Aligned_cols=46 Identities=24% Similarity=0.653 Sum_probs=41.7
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 181 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 181 (729)
.+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999999985 44579987
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.10 E-value=3e-11 Score=99.79 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=52.3
Q ss_pred CCCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 004806 136 PIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 194 (729)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.||+++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 356789999999999999 899999999999999999876 5799999999998888764
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.05 E-value=8.4e-09 Score=106.99 Aligned_cols=198 Identities=13% Similarity=0.066 Sum_probs=155.9
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhh
Q 004806 483 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 562 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~ 562 (729)
...+.++.|+.+|.++++.++..|+++|.++. ..+.++.|+.+|.+.++.++..|+.+|..+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 34578999999999999999999999999885 1346889999999999999999999999886432211
Q ss_pred hhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc
Q 004806 563 KIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 563 ~I~~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~ 639 (729)
...++.|.+ ++.+.++.++..|+++|.++.. .+.. ...+++.|+.++ +++..++..|+.+|+++..
T Consensus 89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 013344442 4567899999999999999864 2211 224678888888 5778888999999987753
Q ss_pred chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 640 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..+++.|+.++...++.++..|+++|..+....+ .+++.|..++.++++.+|..|...|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999999865444 25788999999999999999999998775
No 83
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=98.98 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=48.4
Q ss_pred CCCCCCcccccCccccccC----ceecCCCccccHHHHHHHHhcC--CCCCCCCCccCCCC
Q 004806 134 PVPIPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHT 188 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~ 188 (729)
...+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.||+++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456788999999999999 9999999999999999999875 45799999988654
No 84
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.1e-11 Score=98.73 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.0
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
...+++.||||++.|.+||+++|||+||+.||.+|+..+ .+||+||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhh
Confidence 346789999999999999999999999999999999875 67999999886543
No 85
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.01 E-value=9.8e-10 Score=132.18 Aligned_cols=270 Identities=16% Similarity=0.090 Sum_probs=192.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
...++.|++.+++.+..++..|+.+|..+....+. .+.. .++++.|+.++.++++.++..|+.+|.+|+.....
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~- 248 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD- 248 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH-
Confidence 56788999999999999999999999988765332 1211 26788899999999999999999999999753211
Q ss_pred HHHHh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhh-----------cC------
Q 004806 521 SAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLL-----------GN------ 579 (729)
Q Consensus 521 ~~I~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL-----------~~------ 579 (729)
.+.. .+.++.++.++.+.++.++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 249 -~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 249 -RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp -HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 1111 24677888888888899999999999999875444332221 25567777766 22
Q ss_pred -----CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHH
Q 004806 580 -----GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPV 653 (729)
Q Consensus 580 -----~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~ 653 (729)
.+..+++.|+.+|..|+..... .++ ..+++.+..++ +++..+++.|+.+|++++........-.-...++.
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1224678888888888753221 111 23566666666 56789999999999999985443211122456889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 654 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 654 Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|+..+...++.++..|+++|.+++...+.......-.++++.|+..+.+.++++++.|.++|..|..
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987532211011112467888888888899999999999988764
No 86
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.2e-10 Score=90.63 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=41.5
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 181 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 181 (729)
.+.+++.||||++.|++||+++|||+||+.||.+|+.. +..+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999865 55679987
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.00 E-value=8.9e-11 Score=94.71 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=48.9
Q ss_pred CcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 139 SDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.||+++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCccceeee
Confidence 468899999999998 889999999999999999874 679999999998888775
No 88
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.99 E-value=2.7e-09 Score=128.39 Aligned_cols=274 Identities=16% Similarity=0.116 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH--HH--hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV--IA--NCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~--I~--~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
...++.|++.+.+++..++..++..|..++...+..... +. -...++.|+.++.+.++.++..|+.+|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999998754322110 00 12467778888888999999999999987764322
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
....-.-...++.|+.++.+++++++..|+.+|..|+........-.-.++++.++.++.+.+..++..|+.++.+++..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 11110112567888889999999999999999999986322111111125788888888999999999999999999875
Q ss_pred cHHHHHHHH---cCcHHHHHHhcC-----------C------------CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHH
Q 004806 599 HENKARIVQ---AGAVKHLVDLMD-----------P------------AAGMVDKAVAVLANLATIPDGRVAIGQENGIP 652 (729)
Q Consensus 599 ~en~~~lv~---~G~V~~Lv~LL~-----------~------------~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~ 652 (729)
...+. .+. ..+++.|+..+. + ...++..|..+|..|+..... .+. ...++
T Consensus 287 ~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~ 362 (852)
T 4fdd_A 287 PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILP 362 (852)
T ss_dssp TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHH
Confidence 43332 222 345667766651 1 123466677777777753211 111 13577
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 653 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 653 ~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.+..++.+.+...++.|+++|.+++....+.... .-.++++.|+.++.+.++++|..|.++|..+..+
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999887643222 2245789999999999999999999999887653
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.95 E-value=5.2e-10 Score=94.56 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCCCcccccCccccc--cCceecC--CCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 136 PIPSDFCCPLSLELM--TDPVIVA--SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm--~dPV~~~--~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
.+.+++.||||++.| .||++.+ |||+||+.||.+||..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 367889999999999 5777776 999999999999998776789999999987654
No 90
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.5e-10 Score=91.94 Aligned_cols=52 Identities=15% Similarity=0.438 Sum_probs=46.5
Q ss_pred CCCCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 135 VPIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
..+++++.||||++.|.+| |+++|||+||+.||.+|+... .+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccCc
Confidence 3467889999999999999 899999999999999999874 679999998864
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=8.7e-10 Score=92.82 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=49.7
Q ss_pred CCCCcccccCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 136 PIPSDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||+||+++...++.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 456789999999999987 456999999999999999865 679999999998888776
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.90 E-value=3.5e-08 Score=112.13 Aligned_cols=263 Identities=13% Similarity=0.109 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.+...+++.++.++..|+..|..++...... ......++.|..++.++++.++..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 456778888888999999999999999998754321 223478899999999999999999999999886432111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc--H
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--E 600 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~--e 600 (729)
......++.+..++.+.+..+|..++.+|..++..-.. ......+++.++.++++.++.++..|+.+|..++..- +
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 12235788888899888999999999999998753111 1123467899999999999999999999999887632 2
Q ss_pred HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 601 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.+....-..+++.+..++ +.+..++..++.+|..++..-.. .. .....++.+..++...++.++..|+.+|..++..
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 222223355677777777 46677888888777777642111 11 1123567777777777777777777777666653
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
.+.. . .....++.|..++.+.+.++|..+..+|..
T Consensus 394 ~~~~--~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 394 IGIR--Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp SCHH--H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cCHH--H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2210 0 011234444444444444444444444433
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.90 E-value=2.1e-08 Score=113.98 Aligned_cols=264 Identities=12% Similarity=0.037 Sum_probs=194.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.+...+++.++.++..++..|..++..-.. .. .....++.|..+|.+.+++++..++.+|..+...-...
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-- 397 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-- 397 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--
Confidence 45678888888899999999999999888763211 11 12357889999999999999999999988875321111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
......++.|..++.+.+..+|..++.+|..++..-.. .......++.++.+|.+.+..++..|+.+|..++..-...
T Consensus 398 ~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence 11235678888999888999999999999988752111 1222356888999999999999999999999987632221
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.....+++.|+.++ +++..++..++.++..++..-. . .......++.|+.++...++.++..++.+|..++..-+
T Consensus 476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-Q-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-H-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-H-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 22345778888877 4677888889999998876311 1 12334578899999998999999999999999997543
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
. ......+++.|..++.+.+..+|..|..+|..+..
T Consensus 552 ~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 552 N---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred h---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2 12223467778888778889999999999988753
No 94
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.86 E-value=2.4e-08 Score=109.86 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~ 517 (729)
...++.|++.+.++ ++.++..|+..|..++... +..-... -...++.|+.+|.+. ++.++..|+.+|.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999988 8899999999999998743 1110000 124778888999887 7999999999999875321
Q ss_pred c-cH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch--hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 518 N-NK-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 518 ~-~k-~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
. +- ......-.++.|...+.+.+.+++..++.+|..++..... +..+ ...+++.++..+++.+..++..|+..+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1 00 0001111356666777788899999999999998763221 1111 1167788888888889999999999988
Q ss_pred hcccCcHHHH------------------HHHH---cCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 594 NLSIYHENKA------------------RIVQ---AGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 594 nLs~~~en~~------------------~lv~---~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
.++....... .+++ ..+++.|+..|. .+..++..|+.+|..|+..-.. .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H
Confidence 8875321110 0111 335666777662 1245777888888888763221 1
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
+. ...++.+...+.+.+...++.|+.+|..++.+.. +.....+ ..+++.|+.++.+..+++|..|.++|..+..+-
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 22 2356777778888899999999999999997643 2111111 458999999999999999999999999887653
No 95
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.81 E-value=1.3e-07 Score=109.44 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH-H
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-S 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k-~ 521 (729)
+..++.+.+.+.+.++.++..|+.++..+...+++ .+...++++.|..+|.+.++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 56778899999999999999999999999886654 2334578999999999999999999999999997653211 0
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc----
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI---- 597 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~---- 597 (729)
.....+.+..|+..|...++-.+...+.+|..+...+... ...+++.+..+|++.+..++..|++++..+..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0011234667777777778888888888887776432211 13567888888888899999999999999864
Q ss_pred CcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhC-Ccc------------------h-HHHH------HhCC--
Q 004806 598 YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPD------------------G-RVAI------GQEN-- 649 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~-~~e------------------~-r~~i------~~~g-- 649 (729)
.++.... +-..+++.|+.+++++..++-.|+..|..++. +++ . +.++ ....
T Consensus 273 ~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 2232222 22344566666666666777777777776643 110 0 1111 1122
Q ss_pred --cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 650 --GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 650 --~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
.++.|.+++...+...+..++++|..+|...+.... ..++.|+.++....+.++..+...++.
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 245556666678899999999999999977653221 235566666666555555554444433
No 96
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.80 E-value=3.5e-08 Score=116.25 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=152.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHH-HHhhcCCCHHHHHHHHHHHHhccc--CcHHHH
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL-VDLLGNGTPRGKKDAATALFNLSI--YHENKA 603 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~L-v~LL~~~~~~v~~~Al~aL~nLs~--~~en~~ 603 (729)
..|.++++.|++++++.|..|+.+|.+|+.++..+..+...++|..+ ..+|.+.+..++..|+++|.||+. ..+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45667888899999999999999999999988888888888888875 467888999999999999999987 467889
Q ss_pred HHHHcCcHHHHHHhcCC---------------C-------HHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc
Q 004806 604 RIVQAGAVKHLVDLMDP---------------A-------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~~---------------~-------~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
.+++.|+++.|..+|.. . ..+.+.++.+|++||. ..+....+...++++.|+.+|..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 99999999999988720 0 1244678899999997 55567788888899999999854
Q ss_pred ---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHH---HHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 661 ---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP---PLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 661 ---~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~---~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
....++..|+.+|+.++..+....+.+...+... .|..+..... ..+..+.++|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 3578999999999999999998888888876433 3333333333 34556677776653
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=1.5e-09 Score=100.39 Aligned_cols=56 Identities=16% Similarity=0.405 Sum_probs=50.2
Q ss_pred CCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 137 IPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
.++++.||||++.|++| |+++|||+||+.||.+|+... .+||+||+++....+.++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 36789999999999999 999999999999999999875 579999999988877765
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.77 E-value=3.3e-08 Score=116.43 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=148.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhccC--cchhhh
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI-HVLQTGSPEARENAAATLFSLSVI--EDNKIK 563 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv-~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~ 563 (729)
.|.+|+..|++.++..+..|+.+|.||+.++..+..+...++|.+++ .+|.+.+.+++..|+++|.||+.. .+.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 35567788999999999999999999998888899999999998865 578888999999999999999974 466788
Q ss_pred hhccCcHHHHHHhhcCCC---------------------HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-C-
Q 004806 564 IGRSGAIGPLVDLLGNGT---------------------PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-D- 619 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~---------------------~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~- 619 (729)
+.+.|++++|..+|+... ..+...++.+|.+||. ..+....+...+.++.|+.+| +
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 889999999999986311 1234567889999987 556667788899999999987 2
Q ss_pred --CCHHHHHHHHHHHHHHhCC-cchHHHHHhCCc---HHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 620 --PAAGMVDKAVAVLANLATI-PDGRVAIGQENG---IPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 620 --~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~---I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
....++..|+.+|..|+.. .+....+.+.+. ...++.+.. .+...+..++++|+|+..
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 3467899999999999984 455666666654 233333333 334456678999999853
No 99
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.77 E-value=3.7e-09 Score=86.40 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=42.8
Q ss_pred CcccccCccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++..||||++.+.+| ++++|||+||+.||.+|+..+ .+||.||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 467899999999998 678999999999999999875 679999998864
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.76 E-value=4.1e-09 Score=82.31 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=42.4
Q ss_pred CcccccCccccccC----ceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 139 SDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 139 ~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+++.||||++.|.+ |++++|||+|++.||.+|+..+ .+||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 8889999999999999999987 77999998875
No 101
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.4e-09 Score=89.48 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=46.4
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
.+.+++.||||++.|.+ |+++|||+||+.||.+|+.. ..+||.||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 46778999999999999 99999999999999999985 467999999987654
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=1.6e-09 Score=85.43 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=41.2
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.+++.||||++.|.+||+++|||+||+.||.+| ...||.||+++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467899999999999999999999999999883 45799999987643
No 103
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=9.3e-09 Score=85.54 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCCCcccccCccccccCceec---CCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.+..+++.||||++.|.+|+.+ +|||+|++.||.+|+... .+||.||+++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 3467789999999999988765 999999999999999876 4799999998653
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=83.52 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=44.1
Q ss_pred CCCCcccccCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 136 PIPSDFCCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
...++..||||++.|. +|++++|||+|++.||.+|+..+ .+||.||.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence 3567789999999884 56789999999999999999876 5699999988653
No 105
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.68 E-value=1.3e-08 Score=91.93 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCCcccccCccccccCce------------------ecCCCccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPV------------------IVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV------------------~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~ 187 (729)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 455679999999999987 7899999999999999963 34679999998865
No 106
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.67 E-value=1e-08 Score=80.03 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=42.9
Q ss_pred CCCcccccCccccccC---ceecC-CCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 137 IPSDFCCPLSLELMTD---PVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d---PV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+.++..||||++.|.+ |++++ |||.|++.||.+|+... .+||.||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 3467889999999999 88887 99999999999999874 67999998764
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=88.18 Aligned_cols=50 Identities=14% Similarity=0.487 Sum_probs=44.4
Q ss_pred CCCcccccCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
..++..||||++.|.+ +++++|||.|++.||.+|+... .+||.||.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4577899999999988 8889999999999999999865 579999998764
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=1.3e-08 Score=85.03 Aligned_cols=49 Identities=12% Similarity=0.365 Sum_probs=43.8
Q ss_pred CCcccccCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 138 PSDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 138 p~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.++..||||++.|.+| ++++|||.|++.||.+|+... .+||.||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4678899999999998 778999999999999999875 579999998865
No 109
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=9.7e-09 Score=85.77 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=40.3
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 45789999999999999999999 999999999 569999998764
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.58 E-value=1.6e-08 Score=109.47 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=44.9
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
...||||.+.+.+||+++|||+||+.||..|+..+..+||.||+++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 37899999999999999999999999999999865678999999987643
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.58 E-value=3.1e-07 Score=106.20 Aligned_cols=258 Identities=20% Similarity=0.209 Sum_probs=180.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
.....+++.+.+.+..+++.+...+..++..+++.. .-++..|.+-|.++++.++..|+.+|+++. .++...
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~-- 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITE-- 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHH--
Confidence 456678888889999988888888888877544321 234677777888999999999999998885 222222
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH-
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK- 602 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~- 602 (729)
..++.+..+|.+.++.+|..|+.+|..+.... ...+.+.++++.|..+|.+.++.++..|+.+|..++......
T Consensus 121 ---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 ---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred ---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 23677899999999999999999999987632 122233478899999999999999999999999998743211
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC--
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-- 679 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~-- 679 (729)
..-...+.+..|+..+ +.+.-.....+.+|..++..++.. ....++.+..++++.++.+...|++++..+...
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 0001123455666665 455555667777777776532211 123466777777888899999999999998742
Q ss_pred -CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 680 -SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 680 -~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+++....+. ..+.+.|+.++. .++.+|..|...|..+..
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 333333332 235677776654 678888888887777654
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=1.6e-08 Score=93.34 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=51.1
Q ss_pred CCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 004806 137 IPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 194 (729)
-++.+.||||++.|.+| |+++|||+||..||.+|+... .+||+||.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35789999999999998 889999999999999999876 5799999999988888764
No 113
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.48 E-value=1.9e-06 Score=102.96 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~-~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~ 518 (729)
...++.+++.+.++ +..++..|+.+|..++..-..+-. .......++.+..++.+.+.+++..|+.+|..+... ..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 56778888888876 688999999999988753221110 001113577778888888999999999999988643 22
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch----------------h--hhhh---ccCcHHHHHHhh
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN----------------K--IKIG---RSGAIGPLVDLL 577 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~----------------k--~~I~---~~g~I~~Lv~LL 577 (729)
.-...+....++.++..+.+.++.++..|+..+..++..... + .... -...++.++..|
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 111222336778888888888899999999888888653200 0 0010 024566777777
Q ss_pred cC-------CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc--hHHHHHh
Q 004806 578 GN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD--GRVAIGQ 647 (729)
Q Consensus 578 ~~-------~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e--~r~~i~~ 647 (729)
.. .+..+++.|+.+|..|+..-.. .++ ..+++.+...+ +.+..+++.|+.+|+.++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3457888888898888652211 111 23455555666 5678899999999999997432 222222
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH--HHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 648 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC--SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 648 ~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~--~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
...++.|+..+...++.++..|+++|.+++...+... ...+ ..+++.|+..+.+. ++++..|.++|..+...
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3468899999998999999999999999998754210 0011 13577788888775 89999999988877643
No 114
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.47 E-value=2.4e-06 Score=101.98 Aligned_cols=273 Identities=12% Similarity=0.068 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSS--ETKIQENAVTALLNLSIN 516 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~ 516 (729)
...++.|+..+.++ ++.++..++..|..++..-. ...+.. ...++.|...+.++ +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999988 88999999999999887421 111222 25677788888776 689999999999988642
Q ss_pred -Ccc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 517 -DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 517 -~~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
..+ .........++.+...+...+.+++..++.+|..+.... ..-.......+++.++..+.+.+..++..|+.++.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 000111125667777787888999999999999887632 21111222367888888888888999999999888
Q ss_pred hcccCcHH---------------------HHHHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 594 NLSIYHEN---------------------KARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 594 nLs~~~en---------------------~~~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
+++..... ..+-.-..+++.++.++. .+..++..|+.+|..|+..-.. .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h
Confidence 88653210 000001335667777762 2345777788888877753221 1
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+. ...++.+...+.+.+..+++.|+.+|..++.... +.....+ ..+++.|+..+.+..+.+|..|.++|..+...
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 11 1345666677778899999999999999998653 3222222 34789999999998999999999999888764
No 115
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=5.9e-08 Score=81.13 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=39.3
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
+++.||||++.+.+||+++|||+ ||+.|+.++ ..||+||+++...
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 45679999999999999999999 999999643 5699999998653
No 116
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=3.1e-08 Score=86.52 Aligned_cols=67 Identities=13% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCcccccCccccccCceec---CCCccccHHHHHHHHhc----C---CCCCCC--CCcc--CCCCCCcccHHHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDL----G---LFVCPK--TRQT--LAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~----~---~~~cP~--t~~~--l~~~~l~pN~~l~~~I~~~ 203 (729)
.+.|.||||++.+.+|+++ +|||+||+.||.+||.. + ...||. |+.. ++...+ .+....+++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence 3578999999999999875 79999999999999973 3 235999 9987 554332 233335667777
Q ss_pred HH
Q 004806 204 CE 205 (729)
Q Consensus 204 ~~ 205 (729)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.40 E-value=1.8e-05 Score=91.96 Aligned_cols=257 Identities=14% Similarity=0.070 Sum_probs=171.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
......++.+.+.+.+.++-+--.+..++..+++... -++..|.+-|.++++.++..|+.+|+++.. + .+
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~ 139 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EM 139 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HH
Confidence 3455666777788887777777777777776543211 246777888889999999999999999962 1 12
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 603 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~ 603 (729)
....++.+..+|.+.++.+|..|+.+|..+..... .++ .+.++.+..+|.+.++.++..|+.+|..++.......
T Consensus 140 -~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 140 -CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---ELM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp -HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---GGG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---HHH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 13567888899999999999999999999876221 112 2678888889999999999999999999987543211
Q ss_pred HHHHcCcHHHHHHhcC----------------CCHHHHHHHHHHHHHHhCCcch-H------------------------
Q 004806 604 RIVQAGAVKHLVDLMD----------------PAAGMVDKAVAVLANLATIPDG-R------------------------ 642 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~----------------~~~~v~e~Al~~L~nLa~~~e~-r------------------------ 642 (729)
... ...++.|+.+|. .++-++..++.+|..++..... .
T Consensus 215 ~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 215 AHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 111 245555555441 1333444455555555442111 0
Q ss_pred -----HHHHh--------CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHH
Q 004806 643 -----VAIGQ--------ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 709 (729)
Q Consensus 643 -----~~i~~--------~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~ 709 (729)
..+.. ..++..|..+|.+.++.++..|+.+|..++...+. +++ .....++.++.+.+..+|+
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHH
Confidence 00110 02456677777777778888888888887765442 122 2456777888888888888
Q ss_pred HHHHHHHHhhcC
Q 004806 710 KAQALLSYFRNQ 721 (729)
Q Consensus 710 ~A~~lL~~L~~~ 721 (729)
.|.++|..+...
T Consensus 369 ~alelL~~l~~~ 380 (618)
T 1w63_A 369 RAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHHccc
Confidence 888888777553
No 118
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.40 E-value=2.6e-06 Score=101.43 Aligned_cols=272 Identities=11% Similarity=0.119 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--Cc-
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DN- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~- 518 (729)
...++.+.+.+.+.++..+..|+..|..++.... ..-.... ...++.|+..+.+.++.++..++++|..++.. +.
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 4567777778888889999999999999997532 1111111 25788899999999999999999999988642 10
Q ss_pred -cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc--hhhhhhc--cCcHHHHHHhhcCCC--HHHHHHHHHH
Q 004806 519 -NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGR--SGAIGPLVDLLGNGT--PRGKKDAATA 591 (729)
Q Consensus 519 -~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e--~k~~I~~--~g~I~~Lv~LL~~~~--~~v~~~Al~a 591 (729)
... .-...++.|+..|.+. +.++..|+.+|.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+
T Consensus 447 ~~~~--~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 447 DPQQ--HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp CTTT--THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 000 0123577788888775 8899999999998875311 0111211 356788888887543 7889999999
Q ss_pred HHhcccC-cHHHHHHHHcCcHHHHHHhcCC----------------CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 592 LFNLSIY-HENKARIVQAGAVKHLVDLMDP----------------AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 592 L~nLs~~-~en~~~lv~~G~V~~Lv~LL~~----------------~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
|..+... +......+. ..++.++..+.. ...++..++.+|.+++..-...-.-.-...++.+
T Consensus 524 l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 602 (861)
T 2bpt_A 524 LTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLF 602 (861)
T ss_dssp HHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9988762 222222222 355556555421 2235567888888887632210000112356777
Q ss_pred HHHHccCCH-HHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 655 VEVVELGSA-RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 655 v~lL~s~s~-~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.++...+. .+++.++.++..++...+......+. ..++.|...+....+.++..|..++..+..
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 888877666 78999999998888654322111121 268888888877778889888888776543
No 119
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=6.8e-06 Score=95.53 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~-k~ 521 (729)
+..++.+.+.|++.++.++..|+.++..+...+++.. .++++.|..+|.+.|+.++..|+.+|..++..... ..
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 5668889999999999999999999999998776432 26788889999999999999999999998754221 11
Q ss_pred HHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHhccCcch-hhhh---------------------
Q 004806 522 AIANANAIEPLIHVLQT---------------GSPEARENAAATLFSLSVIEDN-KIKI--------------------- 564 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s---------------~~~e~r~~Aa~aL~nLS~~~e~-k~~I--------------------- 564 (729)
.+ ...++.++.+|.. .++-.+...+.+|..++..+.. ...+
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 11 2556666666542 2455666666666665542211 0000
Q ss_pred --------h--------ccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHH
Q 004806 565 --------G--------RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDK 627 (729)
Q Consensus 565 --------~--------~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~ 627 (729)
+ ...++..|..+|.+.++.++..|+.+|..+..... .++. .....++..+ +++..++..
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccCCChhHHHH
Confidence 0 01245566666666667777777777776654211 1222 2444566666 567888888
Q ss_pred HHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 628 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 628 Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
|+.+|..|+..... .. .+..|.+.+...+...+..++.+|..+|..
T Consensus 370 alelL~~l~~~~nv-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 370 AMELSFALVNGNNI-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHCCSSST-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccccH-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999888874332 11 357777888888889999999999998875
No 120
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.34 E-value=8.9e-06 Score=96.84 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHH--hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC-
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIA--NCGAINILVDMLHSS--ETKIQENAVTALLNLSIN- 516 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~--~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~- 516 (729)
...++.|++.+.++ ++.++..++..|..++..-......+. ....++.|+..|.+. ++.++..|+.+|.++...
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999988 889999999999988874221100000 113567777788876 899999999999887421
Q ss_pred Ccc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 517 DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 517 ~~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+ .........++.|...+.+.+.+++..++.+|..++...... ........++.++..+.+.+..++..|+.++..
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 110 000011235666777888888999999999999887532111 111111566677777888899999999999988
Q ss_pred cccCcHHHH-----------------HHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 595 LSIYHENKA-----------------RIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 595 Ls~~~en~~-----------------~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
++....... .-.-..+++.|+..|. .+..++..+..+|..++..-.. .+. ..
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~~ 369 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EP 369 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-HH
Confidence 876431110 0011456777777773 1246777888888888763211 111 12
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.++.+...+.+.+...++.|+.+|..++.... +.....+. .+++.|+..+.+.++.+|..|.++|..+...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 35666667777889999999999999997643 32222222 4788899999988999999999988777654
No 121
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.33 E-value=2.6e-07 Score=74.79 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCCcccccCccccccCceec--CCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
-+++..|+||++-++|+|++ ||||. ||..|+.+|+..+ ..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchhc
Confidence 34677899999999999988 99999 8999999999865 579999998753
No 122
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.4e-07 Score=77.67 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=40.7
Q ss_pred CcccccCccccccC--------------ceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTD--------------PVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~d--------------PV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4455 599999999999999876 589999998754
No 123
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.29 E-value=3.6e-06 Score=92.41 Aligned_cols=234 Identities=14% Similarity=0.131 Sum_probs=157.6
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~-~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~ 519 (729)
...++.++..|++. +..++..|+.++..+...-..+.. .....-.++.|..++.+.+..++..++.+|..+......
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999877 789999999999886542111100 000111466677777888999999999999988642111
Q ss_pred --HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc------------------hhhhhhc---cCcHHHHHHh
Q 004806 520 --KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED------------------NKIKIGR---SGAIGPLVDL 576 (729)
Q Consensus 520 --k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e------------------~k~~I~~---~g~I~~Lv~L 576 (729)
...+ ..+.++.++..++..+.+++..|+..+..++.... ....+.. ...++.|+..
T Consensus 251 ~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 251 YMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 1111 11566777788888889999999998888865320 0011111 2456666666
Q ss_pred hcCC-------CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch--HHHHH
Q 004806 577 LGNG-------TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAIG 646 (729)
Q Consensus 577 L~~~-------~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~--r~~i~ 646 (729)
|... +..++..|+.+|..|+..-.. .++ ..+++.+...+ +.+..+++.|+.+|+.++..... -...
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~- 405 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL- 405 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-
Confidence 6532 346888999999988763221 111 34566666677 57788999999999999974321 1111
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 647 ~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
-...++.|+..|...++.++..|+++|.+++...+
T Consensus 406 l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 14578999999999999999999999999997643
No 124
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.23 E-value=2.5e-05 Score=78.30 Aligned_cols=187 Identities=15% Similarity=0.140 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
+..+..|+.+|...+..++.+++..|..+.+..+.......-...++.++.++.++|..+...|+.+|..|-.+ +-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 56788999999999999999999999999887433333333347899999999999999999999999998765 22232
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
.+. ..+..|..++.+++.-.+++|+..|..|..... ..+++..+..++.+.+.+++..|+.+|.|++...+.
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 222 235678888899999999999999999832211 135678888999889999999999999999874432
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~ 639 (729)
.. +-.+++.-+-.+| ..+..+++.|+.+|..+.+.+
T Consensus 184 ~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 184 SG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 21 1223444566677 468899999999999998864
No 125
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.23 E-value=5.2e-07 Score=72.77 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred CcccccCccccccCceec--CCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.+..|+||++-++|||++ ||||. ||+.|+.+|+..+ ..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 456799999999999998 99998 9999999999875 679999998753
No 126
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.22 E-value=1.7e-06 Score=108.07 Aligned_cols=271 Identities=11% Similarity=0.093 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...+..|++.+.+.+.+++..|...|.+..+.....-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 35688899999999999999999999876653211000000114577888899989999999999999999754222 11
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh------hhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK------IKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k------~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nL 595 (729)
-...++.|+..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +.+..++..|+.+|..+
T Consensus 84 --~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 --VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1235677888888888888999999998887521111 11122467899999998 57899999999999998
Q ss_pred ccC-cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC-HHHHHHHHHH
Q 004806 596 SIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAA 672 (729)
Q Consensus 596 s~~-~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~A~~a 672 (729)
+.. ...-.. .-...++.|+..| +++..++..|+.+|..++...... + -...++.|+..|.... ...+..|+.+
T Consensus 162 ~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 741 110000 0123555666666 566788999999999998754322 2 2345888888886542 3456677888
Q ss_pred HHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 673 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 673 L~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|..++...+...... -...++.++..++..++.+|+.|..++..+...
T Consensus 238 l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 888876544211000 135788999999888888999988888776553
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.17 E-value=3.3e-07 Score=77.43 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=39.6
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++..|+||++.+.|||++||||. ||+.|+.+|+ .||+||+++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 44679999999999999999999 9999999873 79999998865
No 128
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.16 E-value=6.9e-06 Score=102.59 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH--
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-- 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k-- 520 (729)
...++.|++.|.+.++.+|..|+.+|..++..-.. ..+ ...++.|+..|.++++.++..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 57788999999999999999999999999875433 111 245778888888888899999999998886421111
Q ss_pred ----HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 521 ----SAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 521 ----~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
..-.....++.|+..+. +++...+..|+.+|..++........-.-...++.|+..|.+.++.++..|+.+|..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11123457888999998 5789999999999999874211100001135678888888888999999999999999
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHH--hCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
+...... + -...++.|+..| ..+..++..++.+|..++..... .+. -...++.++..+...++.+++.|+.
T Consensus 203 ~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8744322 1 234677787777 22233445567777776652211 121 1346899999998888889999999
Q ss_pred HHHHHhhCCH
Q 004806 672 ALLQLCTNSS 681 (729)
Q Consensus 672 aL~nL~~~~~ 681 (729)
++..++...+
T Consensus 278 ~l~~l~~~~~ 287 (1230)
T 1u6g_C 278 AFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHHCh
Confidence 9998887644
No 129
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.11 E-value=4.5e-07 Score=97.57 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=40.9
Q ss_pred CCcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.+++.||||++.+.+||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 356899999999999999999999 999999988 569999998864
No 130
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.08 E-value=2.2e-06 Score=76.49 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=40.1
Q ss_pred CcccccCccccccCc------------------eecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 139 SDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
++-.|+||++-|.+| +.++|||.|.+.||.+|+... .+||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence 345799999999987 347999999999999999874 67999999864
No 131
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.04 E-value=2.6e-05 Score=79.04 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=133.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhH-HHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr-~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
.+.+.+.+.++..+..|+..|..+....+... ..+ ...++.|..+|. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 46778889999999999999999887632210 001 145778888894 88999999999999999743111001112
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C-cHH-H
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y-HEN-K 602 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~-~en-~ 602 (729)
...++.|+..+.+....+|..|..+|..+...... ...++.|...|++.++.++..++.+|..+.. . ++. -
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34788999999999999999999999998764221 2467888899999999999999999999644 3 221 1
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...+ ..+++.|+.+| +....++..|..+|..|+.
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 35788888888 5778899999999998875
No 132
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.00 E-value=0.00022 Score=82.84 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhc-CCccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSI-NDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL--~s~d~~v~e~Al~aL~nLs~-~~~~k 520 (729)
-.+..+.+.|++.++.++..|++.|..+.. ++ +. ...++.+..+| .+.++.++..|+.++.++.. +++
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-- 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-- 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--
Confidence 457788889999999999999999999854 22 22 24677888899 88899999999999999864 222
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----CC-------------CHH
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NG-------------TPR 583 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----~~-------------~~~ 583 (729)
.+-..+.++.|..+|.+.++.++.+|+.+|..++..... .+ ...++.++..|. .+ ++-
T Consensus 182 -~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w 256 (621)
T 2vgl_A 182 -LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW 256 (621)
T ss_dssp -GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH
T ss_pred -hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch
Confidence 111247899999999999999999999999998763221 11 134444444332 21 567
Q ss_pred HHHHHHHHHHhcccC--cHHHHHHHHcCcHHHHHHhc-C-C----------CHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 584 GKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-P----------AAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 584 v~~~Al~aL~nLs~~--~en~~~lv~~G~V~~Lv~LL-~-~----------~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
++...+.+|..++.. ++.+..+.+ .+..++..+ + + ...++-.++.++..+...++.+. .
T Consensus 257 ~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~ 329 (621)
T 2vgl_A 257 LSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----R 329 (621)
T ss_dssp HHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----H
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----H
Confidence 788888888888763 333433333 233333222 1 1 12556667777777653322222 2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh-CCCHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~-sg~~rvr~~A~~lL~~L~ 719 (729)
++..|..+|.+.++.++..|+..|..++...+. ...+ + .....++..+. +.+..+|.+|.++|..+.
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV-K-THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 456777777777888888888888888876542 1222 2 24666777777 667778888888776654
No 133
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.00 E-value=9e-05 Score=82.12 Aligned_cols=262 Identities=10% Similarity=0.071 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHH--HHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcC--CH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAIN--ILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANAN--AI 529 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~--~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g--~I 529 (729)
.++.-.+..+...+..++..+......+. ..+. .++..|.. .+...+.-++.+|..|...+..|..+.+.+ .+
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~ 213 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM 213 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchh
Confidence 33444455566665666543322111111 1122 34455554 345567778888988888888898887653 46
Q ss_pred HHHHHHhcC---------------C--CHHHHHHHHHHHHHhccCcchhhhhhccCcH--HHHHHhhcCC-CHHHHHHHH
Q 004806 530 EPLIHVLQT---------------G--SPEARENAAATLFSLSVIEDNKIKIGRSGAI--GPLVDLLGNG-TPRGKKDAA 589 (729)
Q Consensus 530 ~~Lv~lL~s---------------~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I--~~Lv~LL~~~-~~~v~~~Al 589 (729)
++++.+++. + ...++++++-++|-|+..++....+...+.. +.|+++++.. ..++.+.++
T Consensus 214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l 293 (480)
T 1ho8_A 214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI 293 (480)
T ss_dssp HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence 777655431 1 2567899999999999988877777666643 6777777754 689999999
Q ss_pred HHHHhcccCc-----HHHH-HHHHcCcHHHHHHhc-C---CCHHHHHHHHHHHHH-------HhCCcchHH---------
Q 004806 590 TALFNLSIYH-----ENKA-RIVQAGAVKHLVDLM-D---PAAGMVDKAVAVLAN-------LATIPDGRV--------- 643 (729)
Q Consensus 590 ~aL~nLs~~~-----en~~-~lv~~G~V~~Lv~LL-~---~~~~v~e~Al~~L~n-------La~~~e~r~--------- 643 (729)
.+|.||.... .... .++..++++ ++..| . .+.++.+..-.+... |++.++...
T Consensus 294 a~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 294 SIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 9999998743 1112 233445554 55555 2 455555433322222 222222222
Q ss_pred -------HHHh--------C--CcHHHHHHHHcc----------CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHH
Q 004806 644 -------AIGQ--------E--NGIPVLVEVVEL----------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 696 (729)
Q Consensus 644 -------~i~~--------~--g~I~~Lv~lL~s----------~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~L 696 (729)
.+.. . ..+..|+++|.+ .++.+...||.=|..++++.|..+..+-+.|+-..+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V 452 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI 452 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence 2221 1 137899999973 357788889999999999999888888889999999
Q ss_pred HHhhhCCCHHHHHHHHHHHHHhh
Q 004806 697 VALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 697 v~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..|+...++++|..|..++..+-
T Consensus 453 M~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 453 MELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998876553
No 134
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.98 E-value=7.2e-05 Score=75.75 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=132.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHc
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQA 608 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~ 608 (729)
.+...+.+.+...|..|+..|..+... +.....- -...++.|..+|. +.+..++..|+.+|..|+..-...-.-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 477788889999999999999988753 2211100 1256788888894 899999999999999998521111111223
Q ss_pred CcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC-CHhh-HH
Q 004806 609 GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-SSRF-CS 685 (729)
Q Consensus 609 G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~-~~~~-~~ 685 (729)
.+++.|+..+ +.+..+++.+..+|..++..... ...++.|...|.+.++.++..++..|..+... .+.. -.
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 4778888888 67788999999999999875421 12477788888889999999999999996544 3321 11
Q ss_pred HHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 686 MVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 686 ~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..+. ..++.|+.++.+..+++|..|..+|..|..
T Consensus 172 ~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2222 478999999999999999999998887754
No 135
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.96 E-value=0.00043 Score=80.43 Aligned_cols=253 Identities=11% Similarity=0.112 Sum_probs=166.1
Q ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L--~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
+..++.+.+.| .+.++.++..|+.++..+.+.+++. +...++++.|..+|.+.|+.++..|+.+|..++....
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--
Confidence 56778888888 8889999999999999998866542 2224899999999999999999999999999875321
Q ss_pred HHHHhcCCHHHHHHHhc----CC-------------CHHHHHHHHHHHHHhccCc--chhhhhhccCcHHHHHHhh----
Q 004806 521 SAIANANAIEPLIHVLQ----TG-------------SPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLL---- 577 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~----s~-------------~~e~r~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL---- 577 (729)
.. -...++.+++.|. .+ ++-.+...+.+|..++..+ +.+..+. ..+..++..+
T Consensus 220 ~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 220 EE--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP 295 (621)
T ss_dssp HH--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC
T ss_pred HH--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc
Confidence 11 1134455554432 22 4667878888887776532 2222222 2333333322
Q ss_pred -----cCCCH--HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 578 -----GNGTP--RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 578 -----~~~~~--~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
++.+. .+...|+.++..+...++... .++..|..+| ..+..++-.++..|..++........+. .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--T 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--T
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--H
Confidence 11122 677788888888864443222 3566788888 4677888889999999987543223332 3
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 650 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 650 ~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
....++..|. ..+..++..|+.+|..++.. .+...+ +..|...+...+...++.+...+..+
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI-----VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677778888 88889999999999998854 333333 44455555555666666555544444
No 136
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=6.2e-06 Score=67.48 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
-.++..|+||++-..|||++||||. ||..|+.+ ...||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999984 2579999998865
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.92 E-value=1.6e-06 Score=79.80 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.|+..|++.++.++..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3567888999998888888888887765532 136899999999999999999999988752
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
..+++.|+.+|++.++.+|..|+.+|..+. ...+++.|+.+|++.+..++..|+.+|.+|
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 235899999999999999999999999874 246789999999999999999999998764
No 138
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.5e-05 Score=67.38 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=43.3
Q ss_pred CCCcccccCccccc--cCceecCCC-----ccccHHHHHHHHhcCC-CCCCCCCccCCCC
Q 004806 137 IPSDFCCPLSLELM--TDPVIVASG-----QTYERAFIKKWIDLGL-FVCPKTRQTLAHT 188 (729)
Q Consensus 137 ~p~~f~CpI~~~lm--~dPV~~~~G-----~ty~r~~I~~~~~~~~-~~cP~t~~~l~~~ 188 (729)
..++-.|+||++-+ .+|+++||+ |.|-+.||.+|+...+ .+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999776 579999996 9999999999998753 5799999998653
No 139
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.83 E-value=0.0013 Score=78.71 Aligned_cols=236 Identities=18% Similarity=0.126 Sum_probs=164.5
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 004806 445 QVRKLVEDLKSTS--------LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 516 (729)
Q Consensus 445 ~V~~Lv~~L~s~~--------~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~ 516 (729)
.+..|...|.+.+ +.++..|+..|.....++. ...+++.|..+|.+++..+.+.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4566777776544 5567777778877654431 123577899999888877778888888776444
Q ss_pred CccHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHh
Q 004806 517 DNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFN 594 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~n 594 (729)
..+.. ++..|+..+ .+.+..++..++..|.-+. +++...++.+++.|. +.++-++..++.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~--------~g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALIN--------YGRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHT--------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhh--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43332 345666654 3456778888888887663 344577888888876 4677888877777664
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~ 671 (729)
-.....|. .+|+.|+..+ +.+..++..|+..|+.++...+ ..++.++.+| .+.++.++..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33322222 2556666666 5667888889999998876542 3467777655 5689999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
+|..+|.+++. ..++..|..++.+.++.|++.|...|..+-...
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 99999988762 124677788888888999999999888876543
No 140
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.80 E-value=0.00028 Score=70.80 Aligned_cols=221 Identities=14% Similarity=0.081 Sum_probs=157.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~ 563 (729)
+.+..|+.+|...|+.++.+|+.+|..+-.. +.......-...++.++.++++.+..+...|+.+|..|-.+- -....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4677899999999999999999999998643 233333333467999999999999999999999999986532 22222
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
. .-++..|.+++++++.-....|+..|..|......+ +++..+..++ +.+..+...++.+|.+++...+..
T Consensus 113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 2 135678899999999999999999999984432222 2566788888 467888999999999999844322
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH--hhHHHHHhCCCHHHHHHhh-hCCCHHHHHHHHHHHHHh
Q 004806 643 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS--RFCSMVLQEGAVPPLVALS-QSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~--~~~~~vl~~G~v~~Lv~Ll-~sg~~rvr~~A~~lL~~L 718 (729)
..+ .+.+.-+-.+|.+.++..++.|..+|..+....- .....+. ++....-.+. ..|.|.++.+|.-+-..+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 111 2345667788999999999999999999887642 1111111 1122222233 467888998887765554
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00011 Score=75.43 Aligned_cols=186 Identities=11% Similarity=0.145 Sum_probs=132.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhccChhhHHHHHh-cCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcC---CccH-H
Q 004806 449 LVEDLKSTSLDTQREATAELRL-LAKHNMDNRMVIAN-CGAINILVDML-HSSETKIQENAVTALLNLSIN---DNNK-S 521 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~-La~~s~~nr~~I~~-~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~---~~~k-~ 521 (729)
+.+.+.+.++..+.+|+..|.. +....+.......+ ...+..|...| ++.+..++..|+.+|..|+.. +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456788999999999999999 87543221100011 14577788888 688999999999999999742 1111 1
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh--ccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~--~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
. ..-.++.|+..+.+....++..+..+|..++..-+. .... -...++.|+..|++.++.++..++.+|..+....
T Consensus 101 y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 Y--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp H--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1 123688999999988899999988888888753211 1111 1257888999999999999999999999887532
Q ss_pred H---H-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 600 E---N-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 600 e---n-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
. . -...+....++.|.+++ +++..++..|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 1 11222357899999999 5788899999988888774
No 142
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.77 E-value=2.8e-06 Score=78.02 Aligned_cols=119 Identities=19% Similarity=0.166 Sum_probs=89.9
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
...++.|+.+|+++++.++..|+.+|.++.. ..++.|+.+|++.++.+|..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4678899999999999999999988876531 237899999999999999999999988742
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 634 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~n 634 (729)
..+++.|+.+|.+.++.++..|+++|.++.. ..+++.|+.++ +++..++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999999752 34678899988 4677788888887764
No 143
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.67 E-value=6e-06 Score=74.86 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=0.0
Q ss_pred ccccCccccccCce-----------------e-cCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLELMTDPV-----------------I-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~lm~dPV-----------------~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-.|+||++-|.+|. + ++|||.|.+.||.+|+... .+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-CcCCCCCCeee
Confidence 47999999998853 2 4899999999999999874 67999999764
No 144
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.64 E-value=0.00074 Score=74.86 Aligned_cols=230 Identities=15% Similarity=0.174 Sum_probs=151.4
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcC--cHHHHHHHHcC---------------C--CHHHHHHHH
Q 004806 448 KLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCG--AINILVDMLHS---------------S--ETKIQENAV 507 (729)
Q Consensus 448 ~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~G--aI~~Lv~LL~s---------------~--d~~v~e~Al 507 (729)
.++..|.. .+.+.+.-++.+|..|.+ .++.|..+.+.+ .++.++.++.. . ..+++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45555554 345566678889998888 457888887653 46667654431 1 356789999
Q ss_pred HHHHHhhcCCccHHHHHhcCCH--HHHHHHhcCCC-HHHHHHHHHHHHHhccCc--chhh----hhhccCcHHHHHHhhc
Q 004806 508 TALLNLSINDNNKSAIANANAI--EPLIHVLQTGS-PEARENAAATLFSLSVIE--DNKI----KIGRSGAIGPLVDLLG 578 (729)
Q Consensus 508 ~aL~nLs~~~~~k~~I~~~g~I--~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~--e~k~----~I~~~g~I~~Lv~LL~ 578 (729)
-+++-|+.++.....+...+.. +.|+.+++... ..+..-++++|.||.... .... .++..++ ..++..|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999987766666655533 56777777544 778889999999998743 1111 2322344 44556555
Q ss_pred CC---CHHHHHHHHH-------HHHhcccCcHHH------------------------HHHHH--cCcHHHHHHhcCC--
Q 004806 579 NG---TPRGKKDAAT-------ALFNLSIYHENK------------------------ARIVQ--AGAVKHLVDLMDP-- 620 (729)
Q Consensus 579 ~~---~~~v~~~Al~-------aL~nLs~~~en~------------------------~~lv~--~G~V~~Lv~LL~~-- 620 (729)
.. ++++..+--. .+..++.+++.+ .++-+ ..++..|+++|+.
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 42 5544332211 223333222222 12222 2367888898852
Q ss_pred ---------CHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 621 ---------AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 621 ---------~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
++.+..-||.=|+.++. .+.||..+-+.|+=..++++|.+.++.++.+|..++..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24455667777888887 889999888889989999999999999999999999876643
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.54 E-value=0.0029 Score=66.98 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.-.+..+++.|.+++...++.++..|+.+-..+...-..++..||+..|+......+.+++..++.+|.+|-.+......
T Consensus 117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 35678888999988888999999999984444566777778889999999999999999999999999999887777656
Q ss_pred HH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh-cc----------CcHHHHHHhhc---CCCHHHHHH
Q 004806 523 IA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RS----------GAIGPLVDLLG---NGTPRGKKD 587 (729)
Q Consensus 523 I~-~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~-~~----------g~I~~Lv~LL~---~~~~~v~~~ 587 (729)
++ ....|..|..++.+....+...|+.+|..++.+.+....++ +. -.+..|+.+|+ ..+.+++..
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 65 45789999999998888999999999999987654332222 21 14789999997 678999998
Q ss_pred HHHHHHhccc---CcHHHHHHH----HcCcHHHHHHhc
Q 004806 588 AATALFNLSI---YHENKARIV----QAGAVKHLVDLM 618 (729)
Q Consensus 588 Al~aL~nLs~---~~en~~~lv----~~G~V~~Lv~LL 618 (729)
|+..|-.+.. ..+.+..++ +.|.-..+...+
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHH
Confidence 8877665533 223233333 355555565556
No 146
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.46 E-value=0.0073 Score=72.99 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=180.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh---hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh--cCCc
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD---NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS--INDN 518 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~---nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs--~~~~ 518 (729)
..+..|.+.++.-... ..|+..+..++..... .--.+. +.++.++..+.+....++..|-.++..+. .++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777777654333 7888889999865421 112222 67888888888888999988888877764 3343
Q ss_pred cHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 519 NKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.. ...+|.|+..|.+. ....+..|+.+|..|+... ...+.. ...||.+.+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 32 24588899888765 5899999999999998643 333333 37899999999999999999999999888
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
|..-.|+. =...||.|++-+ +++. +..++..|..-+...+.-...+. -.+|.|..-|...+...+..++.++-
T Consensus 203 ~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 87433322 134688888887 4533 55566666655543332111110 12677777777788899999999999
Q ss_pred HHhhC--CHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcC
Q 004806 675 QLCTN--SSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 675 nL~~~--~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~ 721 (729)
|||.- ++.....++ ...+|.|.+....- .|++|+.|..++..|.+.
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99984 443333333 45788888877665 599999999988888664
No 147
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00063 Score=69.74 Aligned_cols=189 Identities=10% Similarity=0.083 Sum_probs=131.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hccC-cchhhhhhc-cCcHHHHHHhh-cCCCHHHHHHHHHHHHhcccCcH--HHHHH
Q 004806 532 LIHVLQTGSPEARENAAATLFS-LSVI-EDNKIKIGR-SGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE--NKARI 605 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~n-LS~~-~e~k~~I~~-~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~~~e--n~~~l 605 (729)
+...+.+.+..-|..|+..|.. +... .+......+ ...+..|...+ ++.+..++..|+.+|..|+..-. .-..-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999998 7642 221100112 25677888888 78899999999999999984111 11101
Q ss_pred HHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHH--hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 606 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 606 v~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
...-+++.+++.+ +....+++.+..+|..++..-+- .... -...++.|+..|.+.++.+++.++.+|..++...+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1223678888888 45577888888888888763211 0000 012477888888889999999999999998876542
Q ss_pred ---hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 683 ---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 683 ---~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.-...+....++.|..++...++.+|..|.++|..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 122233246899999999999999999999988877543
No 148
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.033 Score=53.96 Aligned_cols=212 Identities=12% Similarity=0.154 Sum_probs=142.9
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~ 563 (729)
.++..++.+|.++-..++.+|+.+|.+++.. ++-... .+..|+-+++ +....+....+.++..++.. +..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHH
Confidence 5688899999999999999999999998753 332222 2445555554 55577777778888877642 111
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcch
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
++ .+.+|.+..=.+-++++++..-..+|..++. +++-- .+++.-+..++. ++..-+-.|+..+..|..+ +
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~ 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--S 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--T
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--C
Confidence 21 2556777777788899999999999999876 44432 334556777774 4433333444444444331 1
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 642 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
-..+ ...+|.|..+|...+.-++..|+.+|.+++.-+++.+..+. ..+.=+...++-++.+..+.|..+.-.
T Consensus 176 ~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 176 FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 2222 34689999999999999999999999999999997665543 223334555667777777766655443
No 149
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.33 E-value=0.0067 Score=64.24 Aligned_cols=179 Identities=11% Similarity=0.059 Sum_probs=129.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH-cC
Q 004806 532 LIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AG 609 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G 609 (729)
++..|.+++.+.+..++.-|.. ++.+.+....++..+++..|+.+...++...+..++.||.+|..+..+...++. ..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3444555665666666666666 455677788888899999999999999999999999999999998888877774 66
Q ss_pred cHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc-hHHHHHh--------CC--cHHHHHHHHc---cCCHHHHHHHHHHHH
Q 004806 610 AVKHLVDLMD-PAAGMVDKAVAVLANLATIPD-GRVAIGQ--------EN--GIPVLVEVVE---LGSARGKENAAAALL 674 (729)
Q Consensus 610 ~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e-~r~~i~~--------~g--~I~~Lv~lL~---s~s~~~ke~A~~aL~ 674 (729)
.|..|..++. ....++..|+.+|..++...+ +...+.+ .| -+..|+.+|. +.+...+.+|+..|-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 8888988884 567888999999999988554 3322222 11 2789999997 678999999998886
Q ss_pred HHhhCCH--h----hHHHHHhCCCHHHHHHhhhCC--CHHHHHH
Q 004806 675 QLCTNSS--R----FCSMVLQEGAVPPLVALSQSG--TPRAKEK 710 (729)
Q Consensus 675 nL~~~~~--~----~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~ 710 (729)
.+....+ + ....+-+.|.-..+.+.+... ++..++.
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 6665533 2 222334456556677766654 3455543
No 150
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.19 E-value=0.01 Score=63.98 Aligned_cols=245 Identities=13% Similarity=0.027 Sum_probs=149.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
.....+++.+.+.+...++-.--.+..+++..++. | =++..|.+=+.++++-++-.|+.+|+++...+ .-.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~-- 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQ-- 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHH--
Confidence 34556677888888888877777777777753221 1 24667777788899999999999999995433 111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 603 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~ 603 (729)
...+.+-+.|.+.++.++..|+-+...|.... ... + .+++..+-+++.+.++.+..+|+.+|..+...+..
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 23556777888899999999999988886432 222 2 36899999999999999999999999999774421
Q ss_pred HHHHcCcHHHHHHhcCC----CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 604 RIVQAGAVKHLVDLMDP----AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~~----~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
++..|+.-+.. ++-.....+.++..++...+. -.....++.|..+|++.++.+...|+.++..+...
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 23334443311 122222233333333322101 11234466777777888999999999999887653
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
... + ...++..|..++.+.++.+|-.|...|..+..
T Consensus 281 ~~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 281 SAK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred CHH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 221 1 13356677777888888888888776655544
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.27 Score=47.74 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhc-CCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSI-NDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~-~~~~k 520 (729)
+..+..++.+|..+-+.+|.+|+..|..+++.-++...- .+..|+.+|+ ++...+......+++.++. .++--
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 678999999999999999999999999999977665443 3456666664 4555555556777877763 22211
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
.+.+|.|..-.+-|++.++.+...+|..++. +++.-. +++..+..++.+.+..-+..|+..|..|..++
T Consensus 106 -----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 106 -----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp -----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred -----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 2346777777788999999999999998875 333322 45667788888888777778888887775533
Q ss_pred HHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 600 ENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
- +-+ .-.+|.|..||. .+.-++..|+.+|.+|+...+. |.. |...++-+...|..++......|..|.
T Consensus 176 ~---~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 F---KYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp H---HHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred c---ccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2 212 346788888994 5555667899999999995443 333 233455566778888888777777665
Q ss_pred hC
Q 004806 678 TN 679 (729)
Q Consensus 678 ~~ 679 (729)
.-
T Consensus 246 l~ 247 (253)
T 2db0_A 246 LL 247 (253)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.98 E-value=0.0049 Score=66.38 Aligned_cols=238 Identities=10% Similarity=0.033 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
-.+..|.+.++++++.++-.|++.|..+.-... - ....+.+...|.+.++-|+..|+-+...|... +...+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m--~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM--L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT--H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH--H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHH
Confidence 467889999999999999999999999876431 1 13466778888999999999999999888643 23333
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC---CHHHHHHHHHHHHhcccCcH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~~e 600 (729)
.+++..+-.++.+.++-++.+|+++|..+...+. .++..|+.-+..+ ++-.+..-++.+..++..++
T Consensus 175 --~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 --KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp --HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred --HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 2689999999999999999999999999876431 1445555555443 34444444555555544321
Q ss_pred HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 601 NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
. -.....++.|..+|. .+..++-.|+.++..|...+.. +. ..++..|..+|.+.++.++..|+..|..+...
T Consensus 245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 0 022334455555663 5677777888888877552221 11 23456777788888899999999999888887
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHH
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQ 712 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~ 712 (729)
.|...+. ....|..++.+++-.+..-|.
T Consensus 318 ~P~~v~~-----~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 318 HPSAVTA-----CNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp ---------------------------------
T ss_pred CcHHHHH-----HHHHHHHHccCCcHhHHHHHH
Confidence 7643221 234455566665544444443
No 153
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.68 E-value=0.15 Score=61.27 Aligned_cols=234 Identities=15% Similarity=0.059 Sum_probs=155.6
Q ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--------HHHHHHHHHHHHH
Q 004806 444 TQVRKLVEDLK---STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--------TKIQENAVTALLN 512 (729)
Q Consensus 444 ~~V~~Lv~~L~---s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--------~~v~e~Al~aL~n 512 (729)
..+..|-++|. ++++.++..|+..|..+..... . .++..|...|.+++ +.++..|+..|+.
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45667777776 6678889999999998877542 1 25778888887655 5677788888876
Q ss_pred hhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHH
Q 004806 513 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATA 591 (729)
Q Consensus 513 Ls~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~a 591 (729)
......+. .+++.|..+|.+.+..+++.|+-+|.-+-.... ...++..|+..+. ..+..+++.++.+
T Consensus 464 a~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 464 AAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 64433222 346778888887777677777766665422111 1235667776654 4577889999988
Q ss_pred HHhcccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc-cCCHHHHHH
Q 004806 592 LFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKEN 668 (729)
Q Consensus 592 L~nLs~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~ 668 (729)
|..+.... ...++.+++.| +.++-++..++.+++.-....... .+|+.|++.+. ..++.++..
T Consensus 532 LGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 532 LALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp HHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHH
T ss_pred HHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHH
Confidence 88765422 23566777777 345555555566665444332222 23566666664 467889999
Q ss_pred HHHHHHHHhhCCHhhHHHHHhCCCHHHHHH-hhhCCCHHHHHHHHHHHHHhhc
Q 004806 669 AAAALLQLCTNSSRFCSMVLQEGAVPPLVA-LSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 669 A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~-Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|+.+|..++...++ .++.++. +++++++.+|..|..+|.++..
T Consensus 598 AViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 598 AVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99999988877653 4566665 4567789999999998888754
No 154
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.44 E-value=0.003 Score=52.32 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=37.9
Q ss_pred ccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 187 (729)
-.|+||.+++..=+.- .|||.|=..||.+||+.. ..+||.|++++..
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5699999988743332 699999999999999864 3679999988754
No 155
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.41 E-value=0.0031 Score=50.03 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred CcccccCccccccCceecCCCc-----cccHHHHHHHHhc-CCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDL-GLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 187 (729)
+.-.|.||++-..+|++.||.. -|=+.||.+|+.. ++.+||+|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456999998888999899653 7999999999975 55789999998753
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.23 E-value=0.23 Score=60.07 Aligned_cols=217 Identities=16% Similarity=0.135 Sum_probs=145.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
.++.++..+.+-...++..|..++..+.+.-+.+.. ...+|.|+..|.+. ....+..|+.+|..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 467777777777788888888788777664332222 34688888888755 5899999999999997543 2333
Q ss_pred Hh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 524 AN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 524 ~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
.. ...||.+...+-+..++++..|..++..++..-.|+.. ...||.|++.+.++.. .-.++..|..-+.-.+
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~- 243 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE- 243 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-
Confidence 32 36778888888888899999999999998875445442 2678999999988753 3334444444332222
Q ss_pred HHHHHHcC----cHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHH--HhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 004806 602 KARIVQAG----AVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI--GQENGIPVLVEVVEL-GSARGKENAAAAL 673 (729)
Q Consensus 602 ~~~lv~~G----~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i--~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL 673 (729)
|++- .+|.|..-| +....+..+++-++.|||.--+....+ .-...+|.|-+.... .+|++++.|..++
T Consensus 244 ----v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 244 ----VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred ----ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 1122 344455545 456778899999999999932222222 234456666666654 6799998888888
Q ss_pred HHHh
Q 004806 674 LQLC 677 (729)
Q Consensus 674 ~nL~ 677 (729)
-.|-
T Consensus 320 ~~l~ 323 (986)
T 2iw3_A 320 KTLR 323 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 157
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.15 E-value=0.0039 Score=54.01 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=38.1
Q ss_pred cccCccccccCce-ecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 142 CCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 142 ~CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.|++|.-.+..=. ++||+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888876555433 579999999999999999888899999998754
No 158
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.07 E-value=0.02 Score=64.19 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=154.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHc--C-----C---CHHHHHHHHHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLH--S-----S---ETKIQENAVTALLN 512 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~--GaI~~Lv~LL~--s-----~---d~~v~e~Al~aL~n 512 (729)
....|+..|-+..++++-.|+-.||.+.+.....-...... +..-.|+-+|. . . -.-|+|.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788888999999999999999998877543210000111 22333333331 1 1 24589999999988
Q ss_pred hhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh-ccCcHHHHHHhhcCCCHHHHHHHHHH
Q 004806 513 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATA 591 (729)
Q Consensus 513 Ls~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~a 591 (729)
+ .+-... ..++..|+..+.....+++--++-.|.++ +..+. -.++++.++..|.+.+.+++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 642221 45566666666778899999999999998 22222 14778888888999999999999999
Q ss_pred HHhcccCcHHHHHHHHcCcHHHHHHhc-------CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHH
Q 004806 592 LFNLSIYHENKARIVQAGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 664 (729)
Q Consensus 592 L~nLs~~~en~~~lv~~G~V~~Lv~LL-------~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 664 (729)
|.-++ .+ ..++.++.++ ++=..-+-..+.+|+.|+..+.. +-.....+|.|.-++++.-..
T Consensus 323 LiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 323 LCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHH
T ss_pred hhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHH
Confidence 99998 22 2344444433 21122244567778888775531 111235688899999999999
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHH
Q 004806 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716 (729)
Q Consensus 665 ~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~ 716 (729)
++..++.+|..+. ....-.. ....++-..++.+++.+..+.+
T Consensus 391 VR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999987776 2221111 1223455667788887777665
No 159
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.13 Score=52.77 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=118.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhH--H-HHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--C-c-cH
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNR--M-VIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN--D-N-NK 520 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr--~-~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~-~-~k 520 (729)
|-+.|.+.++..|.+|+..|..+........ . .+... ..++.+-..+.+.+..++..++.+|..+... . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4577889999999999999988766432211 1 11112 3455667788888999999999999887642 1 1 11
Q ss_pred H--HHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 521 S--AIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 521 ~--~I~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
. ...-...++.|+.- |.+....++..|..+|..+....... ..++..++..+.+.++.++..++.+|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 12233567777764 77778889988888887765322111 1235667777888899999999998887643
Q ss_pred Cc--HH-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 598 YH--EN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 598 ~~--en-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
.. .. .....-..+++.+..+| +.+..+++.|..++..|-.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 11 00 00111112344556666 5788999999998888765
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.89 E-value=0.0013 Score=69.55 Aligned_cols=47 Identities=15% Similarity=0.406 Sum_probs=38.2
Q ss_pred ccccCccccccC----cee----cCCCccccHHHHHHHHhcCC----------CCCCCCCccCCC
Q 004806 141 FCCPLSLELMTD----PVI----VASGQTYERAFIKKWIDLGL----------FVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~d----PV~----~~~G~ty~r~~I~~~~~~~~----------~~cP~t~~~l~~ 187 (729)
--|+||+..+.+ |-. ..|||.|-..||.+|++..+ .+||.|+++++.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 469999999988 543 36999999999999998521 359999998764
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.65 E-value=0.44 Score=48.49 Aligned_cols=226 Identities=19% Similarity=0.194 Sum_probs=148.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHH-HhcCcHHHHHHHH-------cCC-----CHHHHHHHHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVI-ANCGAINILVDML-------HSS-----ETKIQENAVTALL 511 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I-~~~GaI~~Lv~LL-------~s~-----d~~v~e~Al~aL~ 511 (729)
.+..++..|..+ +.+..|+.+|..=-..-++---.+ ...|.+..|+.=+ ..+ ...-..+|+..|-
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 455566666543 457777666654222111111122 2348888776522 111 1223356666666
Q ss_pred HhhcCCccHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcc--hhhhhhccCcHHHHHHhhcCCCHHH
Q 004806 512 NLSINDNNKSAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGTPRG 584 (729)
Q Consensus 512 nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e--~k~~I~~~g~I~~Lv~LL~~~~~~v 584 (729)
-++.+++.|..+..+...--|..+|+..+ .-+|..+++++..|...++ .-..+...+.||.++..+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 67889999999999987666777776544 4589999999999987543 3444566799999999999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHH--------cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHh-------
Q 004806 585 KKDAATALFNLSIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ------- 647 (729)
Q Consensus 585 ~~~Al~aL~nLs~~~en~~~lv~--------~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~------- 647 (729)
+..|..++..+-.++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++.+|+++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999998877766554433 22333344433 47788999999999999999999988864
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 648 ENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 648 ~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
.|... .++ .+++..+..-...+.|+
T Consensus 242 d~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 22222 222 35666666655555543
No 162
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.49 E-value=0.04 Score=66.92 Aligned_cols=251 Identities=13% Similarity=0.120 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCccHHHHHhc-----C
Q 004806 459 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNLSINDNNKSAIANA-----N 527 (729)
Q Consensus 459 evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~------s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-----g 527 (729)
..+..|...|..|+..-+ ..+. .-.++.+...|. +.+...++.|+.++..++..-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 356677778888877532 1111 112334444454 567788999999999997431100000000 1
Q ss_pred CHH----HHHHHhcCC---CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 528 AIE----PLIHVLQTG---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 528 ~I~----~Lv~lL~s~---~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
..+ .++..|.+. ++-+|..|+++|..++..- .... -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 233345555 7889999999999987632 1111 23567888888888889999999999999886321
Q ss_pred ---------HHHHHHH--cCcHHHHHHhcCCC----HH--HHHHHHHHHHHHhCCc-chHHHHHhCCcHHHHHHHHc---
Q 004806 601 ---------NKARIVQ--AGAVKHLVDLMDPA----AG--MVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVE--- 659 (729)
Q Consensus 601 ---------n~~~lv~--~G~V~~Lv~LL~~~----~~--v~e~Al~~L~nLa~~~-e~r~~i~~~g~I~~Lv~lL~--- 659 (729)
.+..+.. ..+++.|+.+++.. .. ..+.++.+|..++..- +.-.... ...++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMA 607 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHT
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHH
Confidence 1222211 33555566666321 11 2244555555544311 1100000 113444444443
Q ss_pred -c-CCHHHHHHHHHHHHHHhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 660 -L-GSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 660 -s-~s~~~ke~A~~aL~nL~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
+ .++.....++.+|..++.. .++....+ ....+|.+..+++.........+..++..+
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 2 3566677788888888876 33333333 334678888888876544555555554443
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.30 E-value=0.47 Score=49.84 Aligned_cols=136 Identities=11% Similarity=0.122 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHhcccCcHHHHHHHHc--CcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc---chHHHHHhCCcHHHH
Q 004806 581 TPRGKKDAATALFNLSIYHENKARIVQA--GAVKHLVDLM-DPAAGMVDKAVAVLANLATIP---DGRVAIGQENGIPVL 654 (729)
Q Consensus 581 ~~~v~~~Al~aL~nLs~~~en~~~lv~~--G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~---e~r~~i~~~g~I~~L 654 (729)
.+..+..++++++|+-..+..+..+... .++..+...+ ..+..++..+..++.|++... ...+.. ...+..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHH
Confidence 5667889999999999988888877652 3444444444 356777788888888987621 011110 1134445
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC-CCHHHHHHHHHHHHHh
Q 004806 655 VEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYF 718 (729)
Q Consensus 655 v~lL~s-~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s-g~~rvr~~A~~lL~~L 718 (729)
..++.. .+.+....++.+|.+|...+++..+.....|+-..+-.+... ..+++.+.|..+|..|
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 555543 588999999999999998877655555556666666666655 3589999999888654
No 164
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.016 Score=62.02 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=52.7
Q ss_pred cccccCccccccCcee-cCCCcc--ccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
.+.|||++..|+.||. ..|.|. ||...+....... .-.||+|++.+...+|+.+.-+.+.++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 5899999999999998 579997 9999888876543 446999999999999999988877654
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.95 E-value=0.29 Score=51.38 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=109.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHH----HHHHHhcC-CCHHHHHHHHHHHHHhccCcchh
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE----PLIHVLQT-GSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~----~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
.+..|..++ ....+.+--++-+|.-+..++.....+.+.+.-. .++..+.. +.+..+..++++++|+-.....+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345666665 3344444455555555555544444443332222 23334432 34667889999999998888887
Q ss_pred hhhhcc--CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH-HHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHh
Q 004806 562 IKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN-KARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLA 636 (729)
Q Consensus 562 ~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en-~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa 636 (729)
..+... .+++.+...+...+..++..++.+++|++..... +..=....++..+..++. .+.+.+-.++.+|++|.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 776643 4556666666667889999999999999873110 000001114445555553 57788889999999999
Q ss_pred CCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHH
Q 004806 637 TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAA 671 (729)
Q Consensus 637 ~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~ 671 (729)
........+++.-++...+.-+.+ ..+++.+.|-.
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~ 299 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRF 299 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHH
Confidence 865555555554445544444433 34555554433
No 166
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.59 E-value=0.51 Score=47.98 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcC--CccHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~--~~~k~~I~~~g~I~~Lv~ 534 (729)
.+|+..|.-+|. +++.|..+.++...-.|-.+|+..+ +.++-.++.+++.|... ++.-..+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 467777788887 5689999999999999999997542 55788889999998754 334555677899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHHH-hhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.+..|+.-.|.-|+.++..+-.++..-..+... .++..+|. +.+.+++++.++.+++-..|+.++..+..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999888887766655544432 23444443 445679999999999999999999988877
Q ss_pred HH-------cCcHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004806 606 VQ-------AGAVKHLVDLMDPAAGMVDKAVAVLANL 635 (729)
Q Consensus 606 v~-------~G~V~~Lv~LL~~~~~v~e~Al~~L~nL 635 (729)
.. .|.+. .+++.+..+...-...+.|+
T Consensus 233 ~~~LP~~Lrd~tf~---~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQCLPDQLKDTTFA---QVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHSCGGGTSSTTH---HHHTSCHHHHHHHHHHHHHS
T ss_pred HHhCcHHhhChHHH---HHHhcCHHHHHHHHHHHHhc
Confidence 64 12222 23345555555555555554
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.55 Score=47.99 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=118.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcc---hhhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc------H
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIED---NKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH------E 600 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e---~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~------e 600 (729)
|-.-|.+.+...|..|+..|..+..... ....... ...++.+-..+.+.+..+...++.+|..++..- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5577888899999999988876643211 1111111 234556667888899999999999888776421 1
Q ss_pred HHHHHHHcCcHHHHHHh-c-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 601 NKARIVQAGAVKHLVDL-M-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~L-L-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
......-..+++.|++- | +....+++.++.+|..++........ .+..++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 12222335567777763 5 56778888888888777643221111 24555666778899999999999887654
Q ss_pred CCH-hh--HHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 679 NSS-RF--CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 679 ~~~-~~--~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..+ .. ....+. .+++.|..++.+.++.||..|..++.-+.++-
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 321 10 111111 24556777888899999999999887776653
No 168
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.25 E-value=0.017 Score=50.31 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.7
Q ss_pred CcccccCccc-cccCcee--cCCCccccHHHHHHHHh
Q 004806 139 SDFCCPLSLE-LMTDPVI--VASGQTYERAFIKKWID 172 (729)
Q Consensus 139 ~~f~CpI~~~-lm~dPV~--~~~G~ty~r~~I~~~~~ 172 (729)
+++.|+||.+ .+.+||. +.|||+||+.|++.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 5688999996 4899999 99999999999999544
No 169
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.93 E-value=0.042 Score=58.64 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=54.0
Q ss_pred CCcccccCccccccCcee-cCCCcc--ccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
.=.+.|||++..|+.||. ..|.|. ||...+....... .-.||+|++.+..++|+.+.-+.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 346899999999999998 579988 9999988887654 346999999999999999988777765
No 170
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.35 E-value=0.97 Score=46.43 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=114.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCc-HHHHHHHHcCCCHHHHHHHHHHHHHhhc---CCccHHHH
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGA-INILVDMLHSSETKIQENAVTALLNLSI---NDNNKSAI 523 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~Ga-I~~Lv~LL~s~d~~v~e~Al~aL~nLs~---~~~~k~~I 523 (729)
.+...|-+.+...+..|+..|......++ ...+...+. ++.+.--+.+.+..+...++.+|..+.. ....+-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 44555556677778888888887655433 233332232 2222223346788888888888777631 11111111
Q ss_pred Hh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 524 AN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 524 ~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
.+ .-.+|.|+.-|-.....+|..+-.+|..|... .--..+++.+++-+++.+.+.+..++..|..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 12 23688999999887788998888877766431 111246777888888999999999999888874422111
Q ss_pred HHHHHcCcH---HHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 603 ARIVQAGAV---KHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 603 ~~lv~~G~V---~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...++ +.+..++ +.+..+++.|+.++..+-.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 23467 8888888 6888999999888875543
No 171
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.04 E-value=1.3 Score=46.76 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH----HHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV----IAN-CGAINILVDMLHSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~----I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
.+.+..|+..|..=+-+.+..+......+.+.....+.. +.. ...+..|+.-- +++++.-.+-..|.....++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 457778888888778888888888888887765544322 222 12333333333 35556667777777777777
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhcc---CcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRS---GAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~---g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
.....+...+.+..+...+..++-++-..|..++..|-.. .......... ..+...-.||.+++--.++.++..|.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 7777788888888999999999999999999988877442 2222222221 56777888999999999999999999
Q ss_pred hcccCcHHHHHHHH----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc
Q 004806 594 NLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 640 (729)
Q Consensus 594 nLs~~~en~~~lv~----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e 640 (729)
.|-.+..|...+.. ..-+..++.+| +....+.-.|..++.....++.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99998888776655 44677788888 5778888999999988776553
No 172
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.94 E-value=3.7 Score=49.52 Aligned_cols=217 Identities=10% Similarity=0.080 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHH----hcCcHHH----HHHHHcCC---CHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIA----NCGAINI----LVDMLHSS---ETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~----~~GaI~~----Lv~LL~s~---d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
+.+...+..|+..+..++........... .....+. ++..|.+. .+.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 44556677788888888753110000000 0023333 34445666 8999999999999987532 1221
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc---------hhhhhhc--cCcHHHHHHhhcCCC---HH--HHHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED---------NKIKIGR--SGAIGPLVDLLGNGT---PR--GKKD 587 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e---------~k~~I~~--~g~I~~Lv~LL~~~~---~~--v~~~ 587 (729)
-...++.++..|.+.+..++.+|+.+|.+++...+ .+..+.. ...+..|+.++.... .. ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467788888888889999999999999887422 2333332 256667777777641 11 2234
Q ss_pred HHHHHHhccc--CcHHHHHHHHcCcHHHHHHhc----C--CCHHHHHHHHHHHHHHhCC--cchHHHHHhCCcHHHHHHH
Q 004806 588 AATALFNLSI--YHENKARIVQAGAVKHLVDLM----D--PAAGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEV 657 (729)
Q Consensus 588 Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL----~--~~~~v~e~Al~~L~nLa~~--~e~r~~i~~~g~I~~Lv~l 657 (729)
++.+|..+.. ..+... .+ ..+++.|+..+ + .+......++.+|..++.. ++... -.....++.+..+
T Consensus 573 l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i 649 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence 4445554432 111111 00 11334444443 2 3445556677777777664 22222 2334467888888
Q ss_pred HccCCHHHHHHHHHHHHHHh
Q 004806 658 VELGSARGKENAAAALLQLC 677 (729)
Q Consensus 658 L~s~s~~~ke~A~~aL~nL~ 677 (729)
|........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 87655555566666665554
No 173
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.94 E-value=0.054 Score=55.19 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 652 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 652 ~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
+.|..++...+..++..++..| +.+.|..| ++.+..|++.|..-|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l------------------~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHA------------------SLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHS------------------CHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHc-cCCCHHHHHHHHHHh
Confidence 4566666666777776666653 14566666 777889998887544
No 174
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.29 E-value=4.5 Score=48.68 Aligned_cols=209 Identities=13% Similarity=0.056 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh---c--CCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHH
Q 004806 498 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---Q--TGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 571 (729)
Q Consensus 498 ~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL---~--s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 571 (729)
.+...++.|+.+|..++....... ...++.++.++ . ..++.++..++++|..++.. ..+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 567788999999999875422111 13344444433 3 24788999999999988752 2211111 24566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH--cCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCC--cchHHH
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLMD---PAAGMVDKAVAVLANLATI--PDGRVA 644 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~--~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~--~e~r~~ 644 (729)
.|+..|. +.++..|+.+|.+|+.. .+..+.. ...+..|..++. .+......++.+++.++.. .+....
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6776662 67899999999999852 2233322 345555666663 2456677777777777653 133322
Q ss_pred HHhCCcHHHHHH----HHccC--CHHHHHHHHHHHHHHhhCCH----------------hhHHHHHhCCCHHHHHHhhhC
Q 004806 645 IGQENGIPVLVE----VVELG--SARGKENAAAALLQLCTNSS----------------RFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 645 i~~~g~I~~Lv~----lL~s~--s~~~ke~A~~aL~nL~~~~~----------------~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
... ..++.++. ++... ++..+...+.+|..|+..-. .....+ ...+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHh
Confidence 222 12333333 33332 34344445555544442110 000111 23467777777754
Q ss_pred --CCHHHHHHHHHHHHHhh
Q 004806 703 --GTPRAKEKAQALLSYFR 719 (729)
Q Consensus 703 --g~~rvr~~A~~lL~~L~ 719 (729)
.++.+.+.|.++++.+.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 35788888888887643
No 175
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.06 E-value=4.2 Score=43.92 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHhc-CCH
Q 004806 463 EATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIANA-NAI 529 (729)
Q Consensus 463 ~Al~~L~~La~~-s~~nr~~I~~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-g~I 529 (729)
..+..|+.--+. ...--..+. .+|+..|+.+|.. .+...+..++.+|..+..+..+...+... .+|
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 345555532232 223333444 6788999888841 24578888999999987776666666654 789
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCcc--h-hhhh----------hccCcHHHHHHhhcCC-CHHHHHHHHHHHHhc
Q 004806 530 EPLIHVLQTGSPEARENAAATLFSLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNL 595 (729)
Q Consensus 530 ~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nL 595 (729)
..|+..|.+..+.++..|+.+|..+|.... + ...+ .+..-+..++..|+.. +.+.+..++..+-.|
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999998887553 2 2222 2235578889988874 666666655555555
Q ss_pred ccCc---HH----HHHHHHcCcHHHHHHh
Q 004806 596 SIYH---EN----KARIVQAGAVKHLVDL 617 (729)
Q Consensus 596 s~~~---en----~~~lv~~G~V~~Lv~L 617 (729)
.... +. +..+...|..+.+-.+
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 4432 22 3345567877777664
No 176
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.95 E-value=8.7 Score=45.96 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=84.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh---cCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHH
Q 004806 496 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---QTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 571 (729)
Q Consensus 496 ~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL---~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 571 (729)
.+.+...++.++.+|..++..-... ....++.++.+| ..+++.++..++++|..++.. ..+...+ ..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence 4567888999999999997542110 123344555544 335688999999999988753 2222211 37888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH--cCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCC
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLMD---PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~--~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~ 638 (729)
.|+..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++. .+...+..++.+++.++..
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 88888865 78999999999999852 1111211 223444445552 2456777788888888763
No 177
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=90.70 E-value=0.56 Score=52.76 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
.+..|++.+....++++..++-.|+.+ .+- ... -.++++.++.-|.+.|.+|+..|+.+|.-++ .+....
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL--L~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~--- 333 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYL-KEF--VED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD--- 333 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG--CCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH---
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHH-HHH--HHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH---
Confidence 455555566778899999999888888 211 111 1367888888999999999999999998777 222111
Q ss_pred hcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 525 NANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~--~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..+..+...|.+.+ .......+..|..|...+.. .-.....+|.|..+|++..+.++..++.+|..+.
T Consensus 334 --~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------ 403 (800)
T 3oc3_A 334 --LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------ 403 (800)
T ss_dssp --HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------
T ss_pred --HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------
Confidence 22344444554322 12233344555555543321 1122488999999999999999999999999987
Q ss_pred HHHHHcCcHHHHHH--hcCCCHHHHHHHHHHHH
Q 004806 603 ARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLA 633 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~--LL~~~~~v~e~Al~~L~ 633 (729)
...++..+.+ +++++.++++.+..++.
T Consensus 404 ----~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ----EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ----CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1123333333 23788899998888885
No 178
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.24 E-value=14 Score=39.07 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=141.2
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccH----HHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNK----SAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k----~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
+...+.+..|+..|..=+.+.+..+..+..++.... ..+ ..+... ..+..|+.--. ++++-.++-..|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHH
Confidence 345588999999998889999999999998886542 222 122221 22222322222 3555566667777777
Q ss_pred cCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcC---cHHHHHHhcCC-CHHHHHHHHH
Q 004806 556 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAG---AVKHLVDLMDP-AAGMVDKAVA 630 (729)
Q Consensus 556 ~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G---~V~~Lv~LL~~-~~~v~e~Al~ 630 (729)
.++.....|...+.+-.+.+++..++=++..+|..++..|-. +......++... .+...-.||.+ +--++..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 777777777777888899999999999999999999988755 444455555533 45566667754 4455688999
Q ss_pred HHHHHhCCcchHHHHHh----CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 631 VLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~----~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+|+.|-....+...+.. ..-+..++.+|++.+..++..|.-+.--..++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99999988777666643 234889999999999999999999987777764
No 179
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.93 E-value=6 Score=39.46 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=86.8
Q ss_pred hcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHH
Q 004806 484 NCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATL 551 (729)
Q Consensus 484 ~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL 551 (729)
..||+..|+.+|.. .+...+..++.+|..+..+..+...+.. .+++..|+..|.+..+.++..++.+|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35788888887742 1456788889999888766666666655 47899999999999999999999999
Q ss_pred HHhccCcc--h-hhhh----------hccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCc---HH----HHHHHHcCc
Q 004806 552 FSLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH---EN----KARIVQAGA 610 (729)
Q Consensus 552 ~nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~---en----~~~lv~~G~ 610 (729)
..++...+ + ...+ .+..-+..+++.|+.. +.+.+..++..+-.|.... +. |..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88887543 3 2222 1224566777777743 4555555554444444322 22 233445666
Q ss_pred HHHHHHh
Q 004806 611 VKHLVDL 617 (729)
Q Consensus 611 V~~Lv~L 617 (729)
.+.+-.+
T Consensus 201 ~~il~~l 207 (233)
T 2f31_A 201 HQVLQEL 207 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 180
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.86 E-value=6.8 Score=43.33 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
-..++... .++...++-|+..|..+.++-++.... +|..++.|..++|..++.+|+..|-.+|.+ ++-..
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k--- 100 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR--- 100 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH---
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh---
Confidence 34444443 456788889999999999987765443 688999999999999999999999999987 44333
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
....|+++|.+.+..-...+-.+|..|-..+ -.+.+..|..-+..++..++..++..|.
T Consensus 101 --iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 --VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp --HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3677899999887554444444444432110 1255666666555667778887777664
No 181
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.74 E-value=10 Score=45.45 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=87.0
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh---cCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHH
Q 004806 537 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH 613 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~ 613 (729)
...+...++.++.+|..++..-... ....++.++..+ ..+++.++..++++|..++..-...... -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHH
Confidence 4456788899999999988632110 123344454443 2357889999999999987632111122 2468888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCC
Q 004806 614 LVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 614 Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~ 680 (729)
|+..|.. ..+...|+.+|.+++. +.+..+.. ...+..|..++.. .+...++.+..++..++...
T Consensus 534 l~~~l~~-~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 534 VLHALGN-PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHTTC-GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCC-chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 8888854 6788999999999985 22222211 1234455555654 35788888899998887644
No 182
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.46 E-value=7.1 Score=46.96 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh---c--CCCHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHH
Q 004806 539 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---G--NGTPRGKKDAATALFNLSIY-HENKARIVQAGAVK 612 (729)
Q Consensus 539 ~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~--~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~ 612 (729)
.+...++.++.+|..++..-.... ...++.++.++ . +.++.++..++++|..++.. ..+.. .. ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHH
Confidence 456688888888998876322111 12334444333 3 34789999999999998752 11111 11 22455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhC
Q 004806 613 HLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTN 679 (729)
Q Consensus 613 ~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~ 679 (729)
.|+..|+ ..+...|+.+|.+|+. +.+..+.. ...+..|..++.. .+...++.+..++..++..
T Consensus 550 ~l~~~l~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 550 LLVRGLN--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHH--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 5555553 5678899999999994 33344432 2346666677776 4678899999999888764
No 183
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=88.16 E-value=7.7 Score=36.93 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=21.1
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
..+..+.||+|+.+..+ .-+..||+|+.+-.
T Consensus 134 ~~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 134 EIKKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp CCSCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 44567889988776642 23457999997643
No 184
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=86.57 E-value=0.56 Score=47.43 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=38.3
Q ss_pred ccccCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 004806 141 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 188 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 188 (729)
..|.||.++..-=+.-+ ||+.|-+.|+.+|++.. ...||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46999999877544433 89999999999999864 35799999987654
No 185
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.09 E-value=3.3 Score=42.48 Aligned_cols=133 Identities=9% Similarity=0.056 Sum_probs=92.0
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChh--hHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh-cCC
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMD--NRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANA 528 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~--nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~ 528 (729)
+.+.+..+...++..|..+...-.+ .+..-.+ .-++|.|+.-|.+....+++.+-.+|..+.. +.. ...
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v 168 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKM 168 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHH
Confidence 3467888888888887766431100 0000111 2468889998888888898888887766641 111 235
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcH---HHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 529 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI---GPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 529 I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I---~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
++.++.-+++.+...|+.++..|.++-...... ...++ +.+..++.+.+..++..|+.++..+-
T Consensus 169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 169 TPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 667788888999999999999888875422111 23568 99999999999999999999988653
No 186
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=84.85 E-value=21 Score=43.36 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhc------CC
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSI------ND 517 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~------~~ 517 (729)
.+..+++.+.+++.+.+.+|-..|..+-+. + ++...+..+|. +.+..++..|+.+|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 455566656666677788888888877553 2 45555666664 4588899999999988742 22
Q ss_pred ccHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~-----~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
+.+..| ....+..+...-..+ ...++...+.++..++..+-.. ...+.++.|+.+++ .+...+..++.+|
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 223333 222333333322111 2456666777777776532111 23578899999986 5555667777777
Q ss_pred HhcccC---------cHHH-----HHHHH--cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 593 FNLSIY---------HENK-----ARIVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 593 ~nLs~~---------~en~-----~~lv~--~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
..|+.. ...+ ..+.. ..++..+..++ ..+..++..++.++......-+. ..+.+...++.+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 776631 1111 12222 11233333444 24567888888888887664332 224455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 655 VEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 655 v~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.+.+. .++..+..|+.+|..+...
T Consensus 241 ~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 63332 3678888889988888765
No 187
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=84.16 E-value=12 Score=37.20 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc--h-HHHHHh---------
Q 004806 582 PRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPD--G-RVAIGQ--------- 647 (729)
Q Consensus 582 ~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e--~-r~~i~~--------- 647 (729)
......++.||..|..+..+...++. .+++..|+..|+ +...++..++.+|..+|..++ | ...+.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 45677888899999888888888776 667888888785 567888899999999998654 6 554432
Q ss_pred -CCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCCH------hhHHHHHhCCCHHHHHHhhhCCCHHHHH
Q 004806 648 -ENGIPVLVEVVELG-SARGKENAAAALLQLCTNSS------RFCSMVLQEGAVPPLVALSQSGTPRAKE 709 (729)
Q Consensus 648 -~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~~------~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~ 709 (729)
..-...+++.+... +...+..++..+-.+....+ ..+..+...|....|-.+-..+++....
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 12355677777643 34444443333333444332 2344455667666665555555555443
No 188
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=83.90 E-value=18 Score=38.96 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=89.4
Q ss_pred cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHH
Q 004806 567 SGAIGPLVDLLGN-----------GTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLA 633 (729)
Q Consensus 567 ~g~I~~Lv~LL~~-----------~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~ 633 (729)
.+|+..|+.+|.. .+......++.||..|..+..+...++. ..+|..|+..|. ....++..++.+|+
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4556777766641 2346677888899999888888887776 668888888885 56778889999999
Q ss_pred HHhCCcc---hHHHHHh----------CCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH--h----hHHHHHhCCCH
Q 004806 634 NLATIPD---GRVAIGQ----------ENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS--R----FCSMVLQEGAV 693 (729)
Q Consensus 634 nLa~~~e---~r~~i~~----------~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~--~----~~~~vl~~G~v 693 (729)
.+|..++ |...+++ ..-...++..|.. .+...+..++..+-.+....+ + .+..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 3544432 2236677888876 345555544444444444432 2 33445566766
Q ss_pred HHHHHhhhCCCHH
Q 004806 694 PPLVALSQSGTPR 706 (729)
Q Consensus 694 ~~Lv~Ll~sg~~r 706 (729)
..|-.+-..+++.
T Consensus 268 ~il~~lr~~~~~~ 280 (383)
T 3eg5_B 268 QVLQELREIENED 280 (383)
T ss_dssp HHHHHHTTSCCHH
T ss_pred HHHHHHhcCCChh
Confidence 6665543333444
No 189
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=82.71 E-value=14 Score=37.12 Aligned_cols=177 Identities=13% Similarity=0.054 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 004806 441 GIETQVRKLVEDLK---STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 441 ~~~~~V~~Lv~~L~---s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
.++..|..|++.+. ++...+...|...+..+.. ...++....|..++..+++.-|+.+|..+ . +
T Consensus 34 ~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~-----------~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~ 100 (240)
T 3l9t_A 34 SMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDG-----------EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K 100 (240)
T ss_dssp CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSCH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C
Confidence 46778888888775 3333333333333333321 12234445566777788999999988777 2 1
Q ss_pred ccHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhcc--CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 518 NNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~-lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
. ...++.|.. +-...+-.+++.++.++..++. .++ ..++.+...+++++..+++.|...+.-
T Consensus 101 -~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 101 -D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRI 165 (240)
T ss_dssp -S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCS
T ss_pred -c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHH
Confidence 1 124555555 4456678999999999888764 221 267888899999999999999988765
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHh
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ 647 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~ 647 (729)
-+..+.-+ .--.-+++.|-.+. +++.-++......|..++. +++-...+++
T Consensus 166 W~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 166 WTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp GGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 33221000 00011344444455 4566777777889999998 5555555544
No 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=82.49 E-value=28 Score=37.35 Aligned_cols=134 Identities=18% Similarity=0.252 Sum_probs=89.7
Q ss_pred cCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 004806 485 CGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLF 552 (729)
Q Consensus 485 ~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~ 552 (729)
.+|+..|+.+|.. .+...+..++.+|..|..+..+...+.. ..++..|+..|.+..+.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5788888887742 1456788889999888766666555555 478999999999889999999998888
Q ss_pred HhccCcc--h-hhhh----------hccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcH-------HHHHHHHcCcH
Q 004806 553 SLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE-------NKARIVQAGAV 611 (729)
Q Consensus 553 nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~e-------n~~~lv~~G~V 611 (729)
.+|.... + ...+ .+..-+..+|+.|..+ +.+.+..++..+-.|....+ .|..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887543 3 2222 2234667788888744 55666555555444544322 23445667777
Q ss_pred HHHHHhc
Q 004806 612 KHLVDLM 618 (729)
Q Consensus 612 ~~Lv~LL 618 (729)
+.|-.+-
T Consensus 206 ~il~~Lr 212 (386)
T 2bnx_A 206 QVLQELR 212 (386)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7765554
No 191
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=82.36 E-value=0.82 Score=46.39 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=99.2
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004806 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 554 (729)
Q Consensus 475 s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL 554 (729)
++..|...+..=....|..++.++++.|+..|+..| . .+.|..++.+.+..+|..++.. |
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~~---l 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVADR---L 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHHH---S
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHHh---C
Confidence 445555555432344566677778888888777542 1 1356777888888888887773 2
Q ss_pred ccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHH
Q 004806 555 SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLA 633 (729)
Q Consensus 555 S~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~ 633 (729)
. .+.|..++++++..++..++.. +. .+.+..++ +++..++..++..
T Consensus 123 ~--------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~-- 169 (244)
T 1lrv_A 123 P--------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR-- 169 (244)
T ss_dssp C--------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH--
T ss_pred C--------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc--
Confidence 1 1245566788888888888773 21 12233344 5667777666553
Q ss_pred HHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHH
Q 004806 634 NLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA 713 (729)
Q Consensus 634 nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~ 713 (729)
+ ..+.|..++...+..++..++..| ..+.|..++.+....||..+..
T Consensus 170 -l--------------~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 170 -L--------------PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp -S--------------CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred -C--------------CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 1 123455666778888988888653 2467888889999999998876
Q ss_pred H
Q 004806 714 L 714 (729)
Q Consensus 714 l 714 (729)
-
T Consensus 217 ~ 217 (244)
T 1lrv_A 217 H 217 (244)
T ss_dssp H
T ss_pred c
Confidence 3
No 192
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.85 E-value=7.8 Score=42.87 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHH
Q 004806 579 NGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 656 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~ 656 (729)
.++...++.|+..|...-. +++.. ..++..+++|+ +++..++..|+..|..+|.. +... .++..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHH
Confidence 4578889999998887654 66643 34667899999 57788999999999999986 3322 23678899
Q ss_pred HHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 657 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 657 lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
+|...++......-.+|..|...++. +.+..|+.-+.++++.+|+++...|
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 99999888888888888888888764 3455566666666777777766544
No 193
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=80.71 E-value=1.4 Score=37.87 Aligned_cols=57 Identities=25% Similarity=0.517 Sum_probs=44.2
Q ss_pred CCCCC-CcccccCccccccCceecC-C-C----ccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 004806 134 PVPIP-SDFCCPLSLELMTDPVIVA-S-G----QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 191 (729)
Q Consensus 134 ~~~~p-~~f~CpI~~~lm~dPV~~~-~-G----~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 191 (729)
.+.-| +.+.|||++++-+.=|.+. + | .-||..++.+-...|. .=|.+|.|++..+++
T Consensus 20 ~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sMIv 83 (102)
T 2kkx_A 20 RLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASIIV 83 (102)
T ss_dssp TTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTTEE
T ss_pred hccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhhEe
Confidence 34444 5689999999999999874 2 2 2399999999998874 479999999887654
No 194
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=80.61 E-value=23 Score=35.53 Aligned_cols=143 Identities=14% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhc--CCccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSI--NDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~-LL~s~d~~v~e~Al~aL~nLs~--~~~~k 520 (729)
..+.....+.+++..++|..|+..|..+ .. ....++.+.. +-..++-.|++.+..++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3344444445577788899999977766 21 1234566666 5556789999999999988863 332
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY- 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~- 598 (729)
..++.+...+.+.+..+|..|...+.--+.... ...+ .-+++.|-.+..+++.-+++...++|..++..
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 257788889999999999988876543221110 1111 13566666667778889999999999999984
Q ss_pred cHHHHHHHH
Q 004806 599 HENKARIVQ 607 (729)
Q Consensus 599 ~en~~~lv~ 607 (729)
++-...+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444344443
No 195
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=80.41 E-value=45 Score=40.63 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-----C
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-----D 517 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~-----~ 517 (729)
..+..++..+.+++.+.+.+|-..|..+-+.. ++...+..+|. +.++.++..|+.+|.+.... +
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 45666777776666677778888887775532 44555555554 45889999999999886431 2
Q ss_pred ccHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~-----~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
...........+..+......+ ..-++...+.+|..++..+-.. .....++.|+.+++.+ +.....++.+|
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L~iL 161 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 2222223333444444433221 2334444666666665432111 2357888999988654 34456666666
Q ss_pred HhcccC---------cHHHHH-----HHH--cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 593 FNLSIY---------HENKAR-----IVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 593 ~nLs~~---------~en~~~-----lv~--~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
..|+.. ...|.. +.. ..++..+..+| ..+..++..++.+|......-+ -..+.+.+.++.+
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l 240 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHH
Confidence 655321 112222 222 22333344444 3456778888888888877433 3445667788888
Q ss_pred H-HHHccCCHHHHHHHHHHHHHHhh
Q 004806 655 V-EVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 655 v-~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
. .+|. ++..+..|+.+|..+..
T Consensus 241 ~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CHHHHHHHHHHHHHHHc
Confidence 8 7774 67899999999999987
No 196
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=79.37 E-value=17 Score=44.16 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=98.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc----CCccHHHHHh--cCCHHHHHHHhcCC-------------------C
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSI----NDNNKSAIAN--ANAIEPLIHVLQTG-------------------S 540 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~----~~~~k~~I~~--~g~I~~Lv~lL~s~-------------------~ 540 (729)
.+++.++.+...++.++...++..+..++. .+..+..+.. ...++.++..+..+ +
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 456677776667787887777776666654 2221111110 11233333333211 1
Q ss_pred H---HHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHHHH
Q 004806 541 P---EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHL 614 (729)
Q Consensus 541 ~---e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~~L 614 (729)
. ..+..+..+|..++..... .+. .-+++.|-..+. ..+.+.+..|++++..++.. ......-.-..+++.|
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~--~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVI--DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH--HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHH--HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 1 2233455666666531110 000 111233333343 24678899999999998752 1211111122245555
Q ss_pred HHhcC---C--CHHHHH-HHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 615 VDLMD---P--AAGMVD-KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 615 v~LL~---~--~~~v~e-~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+.+.. . ...++. .++.+++..+..-....... ..+++.|+..|...++.++..|+.+|.++|...
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55442 1 122333 46677776654111111111 134667777777778999999999999999853
No 197
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=79.30 E-value=26 Score=37.62 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc--h-HHHHHh---------
Q 004806 582 PRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPD--G-RVAIGQ--------- 647 (729)
Q Consensus 582 ~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e--~-r~~i~~--------- 647 (729)
......++.||..|..+..+...++. .+++..|+..|+ ....++..++.+|..+|..++ | ...+++
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 45677888899999888888877776 568888888885 567788889999999998654 6 444432
Q ss_pred -CCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH------hhHHHHHhCCCHHHHHHhhhCCCHHHH
Q 004806 648 -ENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS------RFCSMVLQEGAVPPLVALSQSGTPRAK 708 (729)
Q Consensus 648 -~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~------~~~~~vl~~G~v~~Lv~Ll~sg~~rvr 708 (729)
..-...|++.+.. .+...+..++..+-.+....+ ..+..+...|....|-.+-..+++.+.
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 2235667777764 344444444444444444433 234455566666655555444555443
No 198
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.36 E-value=44 Score=40.88 Aligned_cols=220 Identities=14% Similarity=0.032 Sum_probs=132.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC-----C
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIN-----D 517 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~-----~ 517 (729)
..+..++..+.+++.+.+.+|-..|..+-+ ++ ++...+..+|.. .++.++..|+.+|.+.... +
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 456777888877888877888888877655 32 455555566644 5889999999999887431 2
Q ss_pred ccHHHHHhcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQT-----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s-----~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
.....-.....+..+...-.. .++.++...+.+|..++..+-.. .....++.|+.++.. ++......+.+|
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 222222333344555544332 23555656666666665421111 135778888888764 345566677777
Q ss_pred HhcccC--c-------HHH-----HHHHHc--CcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 593 FNLSIY--H-------ENK-----ARIVQA--GAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 593 ~nLs~~--~-------en~-----~~lv~~--G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
..|+.. . ..| ..+... .++..+..+| ..+..++..++.+|..+...-+. ..+.+.+.++.|
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L 252 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHH
Confidence 776542 1 111 122221 1233333334 35677788889999998885432 356677777777
Q ss_pred H-HHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 655 V-EVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 655 v-~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+ .+| .++..+..|+.+|..+....
T Consensus 253 ~~~~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 253 IYKFL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHHTS--SSHHHHHHHHHHHHHHHHSC
T ss_pred HHHhc--CChHHHHHHHHHHHHHHhcc
Confidence 4 444 57789999999999988753
No 199
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=78.19 E-value=90 Score=37.73 Aligned_cols=207 Identities=11% Similarity=0.065 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC---CHHHHHHHHHHHHHhhc--CCc----cHHHHHhcC
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS---ETKIQENAVTALLNLSI--NDN----NKSAIANAN 527 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~---d~~v~e~Al~aL~nLs~--~~~----~k~~I~~~g 527 (729)
+++.|.+|-..|..+-+. + ++......+|... +..++..|+.+|.+... .++ .+..+ ...
T Consensus 21 d~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHH
Confidence 688888888888887553 2 4666777777653 68899999988877532 333 33222 222
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCH-HHHHHHHHHHHhccc--------
Q 004806 528 AIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP-RGKKDAATALFNLSI-------- 597 (729)
Q Consensus 528 ~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~-~v~~~Al~aL~nLs~-------- 597 (729)
.+..+...-. .+..-++...+.+|..+....-. -.....++.|+.++..++. ......+++|..|+.
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~ 166 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL 166 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc
Confidence 3333333110 12355777777777776542111 1234788888888876544 344455555553332
Q ss_pred -CcH--H-----HHHHHHcC---cHHHHHHhc-----CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC
Q 004806 598 -YHE--N-----KARIVQAG---AVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 661 (729)
Q Consensus 598 -~~e--n-----~~~lv~~G---~V~~Lv~LL-----~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~ 661 (729)
..+ . +..+.+.. +++.++.+| ..+..++..++.+|......-+ ...+.+...++.+..+|..
T Consensus 167 ~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~- 244 (980)
T 3ibv_A 167 KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI- 244 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS-
T ss_pred cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC-
Confidence 000 1 22222211 133333344 2566778888888888877433 2444556677888877764
Q ss_pred CHHHHHHHHHHHHHHhhCC
Q 004806 662 SARGKENAAAALLQLCTNS 680 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~ 680 (729)
+..++.|+.+|..+....
T Consensus 245 -~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 245 -EELRCAACETMTEIVNKK 262 (980)
T ss_dssp -HHHHHHHHHHHHHHHHSC
T ss_pred -hHHHHHHHHHHHHHHHcC
Confidence 789999999999988765
No 200
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=78.15 E-value=95 Score=37.85 Aligned_cols=243 Identities=17% Similarity=0.148 Sum_probs=122.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHH----hcC---cHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA----NCG---AINILVDMLHSSETKIQENAVTALLNLSIN 516 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~----~~G---aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~ 516 (729)
...-.|++.|+.-+.+.-......+. ..+..|..+. .+| ++..+..++.++.....+ |+.+|..+...
T Consensus 311 ~~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~ 385 (1056)
T 1lsh_A 311 AKFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSN 385 (1056)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhcc
Confidence 34556777777665543333333222 1233333333 334 455566666654433222 44444322111
Q ss_pred -CccHHHHHhcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhcc----CcchhhhhhccCcHHHHHH----hhcCCCHH
Q 004806 517 -DNNKSAIANANAIEPLIHVLQT----GSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVD----LLGNGTPR 583 (729)
Q Consensus 517 -~~~k~~I~~~g~I~~Lv~lL~s----~~~e~r~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~----LL~~~~~~ 583 (729)
.... ..+..+..++.+ .++.++..++-++.+|.. .... .....++.+.+ .+..++..
T Consensus 386 ~~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~ 455 (1056)
T 1lsh_A 386 QQATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEE 455 (1056)
T ss_dssp CCCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHH
T ss_pred CCCCH------HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChH
Confidence 1122 234556666654 345666666666666643 2111 11123444444 44566777
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC------C--CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHH
Q 004806 584 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD------P--AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 655 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~------~--~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv 655 (729)
-+..++.+|.|+-.. ..++.|..++. . ...++..|+.+|..++..... .+-+.|+
T Consensus 456 ~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~ 518 (1056)
T 1lsh_A 456 EIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVL 518 (1056)
T ss_dssp HHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHH
T ss_pred HHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHH
Confidence 888999999997542 35667777762 1 245667788888888753210 1234566
Q ss_pred HHHc--cCCHHHHHHHHHHHHHHhhCCHhhHHHHH----hCC-------CHHHHHHhhhCCCHH---HHHHHHHHHHHhh
Q 004806 656 EVVE--LGSARGKENAAAALLQLCTNSSRFCSMVL----QEG-------AVPPLVALSQSGTPR---AKEKAQALLSYFR 719 (729)
Q Consensus 656 ~lL~--s~s~~~ke~A~~aL~nL~~~~~~~~~~vl----~~G-------~v~~Lv~Ll~sg~~r---vr~~A~~lL~~L~ 719 (729)
.+.. ..+.+++-.|+.+|...+ -+......+. .+. +...|..+..+..|. ++..|..+++++.
T Consensus 519 ~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a~~~l~ 597 (1056)
T 1lsh_A 519 PIFLNVAIKSELRIRSCIVFFESK-PSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLG 597 (1056)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTC-CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHTTSC
T ss_pred HHhcCCCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc
Confidence 6663 356677766666664322 2221111111 111 233455555666553 4445566666654
No 201
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=77.94 E-value=13 Score=45.34 Aligned_cols=138 Identities=8% Similarity=-0.008 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCcc-HHHHHhcCCHHHHHHHhcC--C---CHHHHHHHHHHHHHhccCcchhhhhhccCcHH
Q 004806 498 SETKIQENAVTALLNLSINDNN-KSAIANANAIEPLIHVLQT--G---SPEARENAAATLFSLSVIEDNKIKIGRSGAIG 571 (729)
Q Consensus 498 ~d~~v~e~Al~aL~nLs~~~~~-k~~I~~~g~I~~Lv~lL~s--~---~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~ 571 (729)
.+...++.++++++.++..... ...-.-..+++.|+.++.. + ...++..++++|...+..-...... -..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 5789999999999999865432 2222223557777777753 1 1234445667776655421111111 124555
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH------cCcHHHHHHhc----C-CCHHHHHHHHHHHHHHhCC
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ------AGAVKHLVDLM----D-PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~------~G~V~~Lv~LL----~-~~~~v~e~Al~~L~nLa~~ 638 (729)
.|+..+...++.+...|+++|.+||. +.+..++. ...++.++..+ + -+......+..+++.+...
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 56666666788999999999999986 34444442 12344444433 2 3444556677777777663
No 202
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.69 E-value=3 Score=35.14 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=37.2
Q ss_pred cccccCcccc-----ccCceec--CCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 140 DFCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 140 ~f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.-.|.||++= =-+|-+. .|+...||.|.+-=..+++..||.|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3579999863 1234444 4899999999998888998899999988863
No 203
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=76.26 E-value=72 Score=39.46 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhc----
Q 004806 444 TQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSI---- 515 (729)
Q Consensus 444 ~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL--~s~d~~v~e~Al~aL~nLs~---- 515 (729)
..+..+++.+.++ +.+.+.+|-..|..+-+.. ++...+...| .+.+..++..|+.+|.|...
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3345555544444 6677888888888775532 2334444433 34578899999999988742
Q ss_pred --CCccHHHHHhcCCHHHHHHHhcC---CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHH
Q 004806 516 --NDNNKSAIANANAIEPLIHVLQT---GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590 (729)
Q Consensus 516 --~~~~k~~I~~~g~I~~Lv~lL~s---~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~ 590 (729)
.++.|..| ....+..+...-.. ....++...+.++..++..+-.. ....+++.|+.++.. +...+..++.
T Consensus 81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMF 155 (1204)
T ss_dssp GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHH
Confidence 22233333 22233333322111 34667777788888776532211 135788999988876 4555777788
Q ss_pred HHHhcccC-------cHHHHH-----HHHc--CcHHHHHHhcCC--------------------CHHHHHHHHHHHHHHh
Q 004806 591 ALFNLSIY-------HENKAR-----IVQA--GAVKHLVDLMDP--------------------AAGMVDKAVAVLANLA 636 (729)
Q Consensus 591 aL~nLs~~-------~en~~~-----lv~~--G~V~~Lv~LL~~--------------------~~~v~e~Al~~L~nLa 636 (729)
+|..|+.. ...+.. +.+. .++..+..++.. ...++..++.++.+..
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l 235 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI 235 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 88877531 112221 2211 122222333311 1124445555555444
Q ss_pred CCcchHHHHHhCC--cHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 637 TIPDGRVAIGQEN--GIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 637 ~~~e~r~~i~~~g--~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
..... ..+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 236 ~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 236 DWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred hccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 43222 2223332 4666665544 5678899999999999754
No 204
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=75.92 E-value=26 Score=42.43 Aligned_cols=270 Identities=12% Similarity=0.042 Sum_probs=135.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---CccHHHH
Q 004806 447 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DNNKSAI 523 (729)
Q Consensus 447 ~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~---~~~k~~I 523 (729)
..|...+.+.++.+...++.+|.....-- .-..+...+.++.+..+|.. ++++..|+.+|..+... ++.+..+
T Consensus 196 ~iL~~~~~~~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~l 271 (980)
T 3ibv_A 196 EMMLAYSNAKNYGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNL 271 (980)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 33333334467788889999999887632 34556667889999998864 88999999999888532 3334333
Q ss_pred HhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhcc-------Cc-----chhhhhhc--cCcHHHHHHhhcCCCHHHHHH
Q 004806 524 ANANAIEPLIHVLQ--TGSPEARENAAATLFSLSV-------IE-----DNKIKIGR--SGAIGPLVDLLGNGTPRGKKD 587 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~--s~~~e~r~~Aa~aL~nLS~-------~~-----e~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~ 587 (729)
+..=.+..++..+. ..+.+..+..+..+..+.. .+ +.+..... .+.++.++.++.+++.++...
T Consensus 272 i~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~ 351 (980)
T 3ibv_A 272 LNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTA 351 (980)
T ss_dssp HHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHT
T ss_pred HHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 33211222232222 3566665544444433321 11 00111111 267888888888888777666
Q ss_pred HHHHHHhcccCcHH-------HHHH--HHcCcHHHHHHhc--CCC----H-----------HHHHHHHHHHHHHhC--Cc
Q 004806 588 AATALFNLSIYHEN-------KARI--VQAGAVKHLVDLM--DPA----A-----------GMVDKAVAVLANLAT--IP 639 (729)
Q Consensus 588 Al~aL~nLs~~~en-------~~~l--v~~G~V~~Lv~LL--~~~----~-----------~v~e~Al~~L~nLa~--~~ 639 (729)
++..+..+...... .... +-..+++.++.-+ +++ . ..+.... +|...+. .+
T Consensus 352 t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~ 430 (980)
T 3ibv_A 352 VFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDS 430 (980)
T ss_dssp THHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcCh
Confidence 65554443321100 0100 1122333444433 110 0 1121222 2222221 11
Q ss_pred chHHHHHhCCcHH-HHHHHHc---cCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-C----CCHHHHHHhhh-----CCCH
Q 004806 640 DGRVAIGQENGIP-VLVEVVE---LGSARGKENAAAALLQLCTNSSRFCSMVLQ-E----GAVPPLVALSQ-----SGTP 705 (729)
Q Consensus 640 e~r~~i~~~g~I~-~Lv~lL~---s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~-~----G~v~~Lv~Ll~-----sg~~ 705 (729)
+-.-...- ..+. .+.+.+. +.+-...|.|+.+|..++..-......+.. . ..++.|..++. ..++
T Consensus 431 ~~~l~~~~-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp 509 (980)
T 3ibv_A 431 SLFSSYMY-SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHP 509 (980)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCH
T ss_pred HHHHHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCH
Confidence 11000000 0111 1122221 234677899999999887654321111100 0 13455556655 5679
Q ss_pred HHHHHHHHHHHHhhcCc
Q 004806 706 RAKEKAQALLSYFRNQR 722 (729)
Q Consensus 706 rvr~~A~~lL~~L~~~~ 722 (729)
+++..+.+++.....+-
T Consensus 510 ~V~~~~~~~l~rys~~~ 526 (980)
T 3ibv_A 510 LVQLLYMEILVRYASFF 526 (980)
T ss_dssp HHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877764
No 205
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=73.32 E-value=10 Score=35.82 Aligned_cols=73 Identities=7% Similarity=0.069 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|++.++.+|..|+..|-.+.+.. ......++...++..|+.++.. .++.|++.++..|...+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999998863 4455567777889999998875 57899999888886664
No 206
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=70.60 E-value=88 Score=33.27 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=81.7
Q ss_pred HHHhhcCC-ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc-CCCHHHHHH
Q 004806 510 LLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKD 587 (729)
Q Consensus 510 L~nLs~~~-~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~ 587 (729)
|.||..++ +.-.-++..+|+..+.-+++.++.++.......|...|....... +--...+|-++..+. +++.++...
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCcceEEe
Confidence 44665554 445668899999999999999999998888888887764322111 111367788887776 668899999
Q ss_pred HHHHHHhcccCc-HHHHHHHHcCcHHHHHHhc
Q 004806 588 AATALFNLSIYH-ENKARIVQAGAVKHLVDLM 618 (729)
Q Consensus 588 Al~aL~nLs~~~-en~~~lv~~G~V~~Lv~LL 618 (729)
....|.|...+. ..+...+..|+++.|...+
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 999999998765 4567778899999998876
No 207
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.87 E-value=13 Score=34.45 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s------~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|++.++.+|..|+..|-.+.+.. ......++...++..|+.++.. .+..|++.++..|...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999998863 4556777778999999999864 37899999988887765
No 208
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.12 E-value=13 Score=34.06 Aligned_cols=73 Identities=8% Similarity=0.082 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|++.++.+|..|+..|-.+.+... .....++...++..|+.++...++.|+...+..|...+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999998888643 33456666788888999887788999999988887764
No 209
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=68.57 E-value=93 Score=33.08 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=85.9
Q ss_pred HHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc-cCCHHH
Q 004806 588 AATALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARG 665 (729)
Q Consensus 588 Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ 665 (729)
+...|.-|.-......-+++..+|..+...+. ++..++...+.+|...+....-.. .--...+|.++..+. .+.+.+
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCcce
Confidence 33333333335566788999999999999985 788888889998888765432110 001235788888885 578999
Q ss_pred HHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC
Q 004806 666 KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 666 ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
...+...|.|+.++..-..+..+..|+++.|...+..
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 9999999999999998788889999999999998754
No 210
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=67.38 E-value=42 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=18.9
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
...+.|++|+.++. | .-+..||+|+.+-
T Consensus 169 ~~~~~C~~CG~i~~-------g-------------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 169 DKFHLCPICGYIHK-------G-------------EDFEKCPICFRPK 196 (202)
T ss_dssp CCEEECSSSCCEEE-------S-------------SCCSBCTTTCCBG
T ss_pred CcEEEECCCCCEEc-------C-------------cCCCCCCCCCCCh
Confidence 45788988877654 1 1235799999763
No 211
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=67.32 E-value=13 Score=35.26 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s------~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|++.++.+|..|+..|-.+.+.. ......++...++..|+.++.. .+..|++.++..|...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999864 3455667777899999999863 36889999999887765
No 212
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=63.17 E-value=88 Score=38.24 Aligned_cols=216 Identities=12% Similarity=0.078 Sum_probs=122.8
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcc-----h
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIED-----N 560 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e-----~ 560 (729)
.+..++..+.++++..+..|-..|..+-.++ ++...+..+|.. .++.+|..|+.+|.+...... .
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 4555666666677777888888887765444 334444455544 468899999999998754221 1
Q ss_pred hhhhhccCcHHHHHHhhcC-----CCHHHHHHHHHHHHhccc--CcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHH
Q 004806 561 KIKIGRSGAIGPLVDLLGN-----GTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA 633 (729)
Q Consensus 561 k~~I~~~g~I~~Lv~LL~~-----~~~~v~~~Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~ 633 (729)
...-.+...+..+...... .++.++...+.+|..+.. .++.. ...++-|+.++..+...++..+.+|.
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTSESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1112222333433333222 235555555666666543 22221 34566666666444555677777777
Q ss_pred HHhCC--c-------ch-----HHHHHhC--CcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHH
Q 004806 634 NLATI--P-------DG-----RVAIGQE--NGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 696 (729)
Q Consensus 634 nLa~~--~-------e~-----r~~i~~~--g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~L 696 (729)
.|... . .. +..+... ..+..+..+|. ..++.....+..+|..+..--+ ...+++.+.++.|
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L 252 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHH
Confidence 77642 1 01 1233322 12333444443 3577777778888887766543 2456677778877
Q ss_pred -HHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 697 -VALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 697 -v~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..++ +.+..+..|.++|..+-.
T Consensus 253 ~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 253 IYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CChHHHHHHHHHHHHHHh
Confidence 4555 467889999988777654
No 213
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.38 E-value=27 Score=32.33 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s------~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|++.++.+|..|+..|-.+.+... .....|+...++.-|+.++.. .+..|+...+..|...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999988643 334667777899999999963 57889999998887765
No 214
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=61.48 E-value=1.5e+02 Score=30.74 Aligned_cols=146 Identities=11% Similarity=0.063 Sum_probs=94.1
Q ss_pred CcHHHHHHhhcCC------CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhC-
Q 004806 568 GAIGPLVDLLGNG------TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT- 637 (729)
Q Consensus 568 g~I~~Lv~LL~~~------~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~- 637 (729)
..+..+.++++++ +......|+-.|.-++-+-+.-.+++... ...|-.|+ .....+.+.|..+++.-..
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 3455666777776 34456778888888876555555565522 33343433 3456788999998887666
Q ss_pred CcchHHHHHh--CCcHHHHHHHHcc-------CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHH
Q 004806 638 IPDGRVAIGQ--ENGIPVLVEVVEL-------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPR 706 (729)
Q Consensus 638 ~~e~r~~i~~--~g~I~~Lv~lL~s-------~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~r 706 (729)
+++....|.+ ...+..+..-|.. .....+..-+.+|-.|....... ...++..|..++..+ .+.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence 5566666654 2345555444432 34566667788888888775322 144778888888877 899
Q ss_pred HHHHHHHHHHHhh
Q 004806 707 AKEKAQALLSYFR 719 (729)
Q Consensus 707 vr~~A~~lL~~L~ 719 (729)
++.++..++.-+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999776665
No 215
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=60.70 E-value=15 Score=34.53 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=56.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-HhhHHHHHhCCCHHHHHHhhhC-CCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~-~~~~~~vl~~G~v~~Lv~Ll~s-g~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+. ......|.....+..|+.++.. .++.|++++..++..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4667888888999999999999998888885 4466677666778888888875 458999999998876654
No 216
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=56.81 E-value=19 Score=33.30 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=57.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhC------CCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~s------g~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+..|+.++.. ....|++++..++..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999998888854 566777777788889998874 257899999888876554
No 217
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=55.83 E-value=98 Score=32.15 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCC------CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 444 TQVRKLVEDLKST------SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 444 ~~V~~Lv~~L~s~------~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
.....+..+++++ +.+.-..|+..|-.|+.+- +.=..|.+ ...+..|+ +....++.+++.|.++|.....
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi-~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDY-KHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSH-HHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhH-HhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 3445555566665 3334467888888887743 33334443 23444444 3345678899999999987655
Q ss_pred C-CccHHHHHhc--CCHHHHHHHhcC-------CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--CHH
Q 004806 516 N-DNNKSAIANA--NAIEPLIHVLQT-------GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPR 583 (729)
Q Consensus 516 ~-~~~k~~I~~~--g~I~~Lv~lL~s-------~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--~~~ 583 (729)
+ +.....|... ..+..++.-|.. ....++..-+.+|--|..+.. .+ ...++..|..++... ++.
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHH
Confidence 4 4444444443 555555544432 234455666777777776541 11 134667777777766 888
Q ss_pred HHHHHHHHHHhcc
Q 004806 584 GKKDAATALFNLS 596 (729)
Q Consensus 584 v~~~Al~aL~nLs 596 (729)
++..++..+..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888877776553
No 218
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.33 E-value=16 Score=33.53 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=55.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+..|+.++...++.|++++..++.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 46778888889999999999998888887764 345566555677778888877789999999998876554
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.47 E-value=26 Score=34.69 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 514 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs 514 (729)
+..++.|.+.|++.++.+|..|+..|-.+.++.. .....|+...++..|+.++.. .+..|++.++..|...+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988633 345667777888888888864 47889999998887765
No 220
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.06 E-value=18 Score=34.27 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=57.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhC------CCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~s------g~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+..|+.++.. ....|++++.+++..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999999988865 466677777788889998863 247899999998876544
No 221
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=52.58 E-value=2.3e+02 Score=34.37 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=93.2
Q ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHhhc----CCccHHHHHhcCCHHH----HHHHhcCCCHHHHHHHHHHHHHh
Q 004806 487 AINILVDMLHS----SETKIQENAVTALLNLSI----NDNNKSAIANANAIEP----LIHVLQTGSPEARENAAATLFSL 554 (729)
Q Consensus 487 aI~~Lv~LL~s----~d~~v~e~Al~aL~nLs~----~~~~k~~I~~~g~I~~----Lv~lL~s~~~e~r~~Aa~aL~nL 554 (729)
.+..+..|+.+ .++.++..|+-++..|.. +.... ....++. |...+..++.+-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 45556666655 356667777777766642 21110 1122344 44445667777788889999998
Q ss_pred ccCcchhhhhhccCcHHHHHHhhcC-------CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-C--CCHHH
Q 004806 555 SVIEDNKIKIGRSGAIGPLVDLLGN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGM 624 (729)
Q Consensus 555 S~~~e~k~~I~~~g~I~~Lv~LL~~-------~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~--~~~~v 624 (729)
-. ...++.|..++.. ...+++.+|++||.++....... +-+.|+.++ + .+.++
T Consensus 468 g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHH
T ss_pred CC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHH
Confidence 54 3567777777742 24688899999999997532211 223456665 2 45666
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCC
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~ 680 (729)
+..|+.+|.. .++.. ..+..+...+.. .+..+.-.....|.+++...
T Consensus 531 RiaA~~~Lm~--t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVFFE--SKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH--HCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 6666655532 22321 123444444433 45555555555555555543
No 222
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=50.10 E-value=2.1e+02 Score=30.60 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 513 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nL 513 (729)
.++++.++.+-...+.++|+..+..|...++...+.- .-+++.|..+|.++++.+...++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4677888887777788889888888887776544331 23567777888888888888777776665
No 223
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.12 E-value=64 Score=35.10 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc-CCHHHHHHHhcC
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQT 538 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv-~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-g~I~~Lv~lL~s 538 (729)
+.-++..||.++.+.... +.+..++ ..+.+..+..+--++++|+||-.++.....++.. .....++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 556778888777754322 2222233 2334456778889999999998877744444433 334556665531
Q ss_pred --------CCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhc---------CCCHHHHHHHHHHHHhccc
Q 004806 539 --------GSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLG---------NGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 539 --------~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~---------~~~~~v~~~Al~aL~nLs~ 597 (729)
.+..++..++.+++|+|.... .+.. ...+..+++++. ..+.+....++.||.+|..
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 135688889999999987321 1111 234455666555 2477888888888888875
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.97 E-value=38 Score=33.26 Aligned_cols=73 Identities=7% Similarity=0.076 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|++.++.+|..|+..|-.+.+... .....|+...++..|+.++.. .+..|++.++..+...+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999988653 345667777888888888864 46888988888876664
No 225
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=47.60 E-value=44 Score=32.14 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=17.7
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
.+.|++|+.++. |- .-+..||+|+.+-
T Consensus 155 ~~~C~~CG~~~~-------g~------------~~p~~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYVHE-------GT------------GAPELCPACAHPK 181 (191)
T ss_dssp EEEETTTCCEEE-------EE------------ECCSBCTTTCCBG
T ss_pred eEEECCCCCEee-------CC------------CCCCCCCCCcCCH
Confidence 588888866654 11 2344799999863
No 226
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.38 E-value=30 Score=32.04 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=56.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhC------CCHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~s------g~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+..|++++.. ..+.|++++..++.....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999988888875 355667666778889988863 357899999998876654
No 227
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=47.36 E-value=5.3 Score=26.38 Aligned_cols=16 Identities=44% Similarity=0.806 Sum_probs=12.4
Q ss_pred CCcccccCccccccCc
Q 004806 138 PSDFCCPLSLELMTDP 153 (729)
Q Consensus 138 p~~f~CpI~~~lm~dP 153 (729)
|..|.||+|...|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4568899998877776
No 228
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=46.12 E-value=2.8e+02 Score=34.11 Aligned_cols=124 Identities=11% Similarity=0.030 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhccC------cchhhhhhccCcH
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSVI------EDNKIKIGRSGAI 570 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL--~s~~~e~r~~Aa~aL~nLS~~------~e~k~~I~~~g~I 570 (729)
+...+..|-..|.++..++ .+...+...| .+.+..+|..|+.+|.+.... ++.+..| +..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHH
Confidence 6677888888887664322 2444444444 344688999999999987532 1222222 22233
Q ss_pred HHHHHhhcC---CCHHHHHHHHHHHHhcccC--cHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 004806 571 GPLVDLLGN---GTPRGKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 571 ~~Lv~LL~~---~~~~v~~~Al~aL~nLs~~--~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~ 637 (729)
..+...... ....++...+.++..+... ++.. ...++.|+.++..+...++.++.+|..|+.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 333222111 3467777777777777542 3211 357778888885556667778888888864
No 229
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.55 E-value=4.8 Score=27.81 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=12.2
Q ss_pred CcccccCccccccCce
Q 004806 139 SDFCCPLSLELMTDPV 154 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV 154 (729)
+-|.||||..-+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3588999988777664
No 230
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.27 E-value=32 Score=34.74 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCc-cHHHHHhcCCHHHHHHHhcC
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSINDN-NKSAIANANAIEPLIHVLQT 538 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~-LL~s~d~~v~e~Al~aL~nLs~~~~-~k~~I~~~g~I~~Lv~lL~s 538 (729)
+.-++..+|.++.+...+ +.+..++. .+.+.++..+--++++++|+-.++. .+..+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 455777777777654322 23333332 3334567788899999999988877 66666544334445554421
Q ss_pred --------CCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhcC---------CCHHHHHHHHHHHHhccc
Q 004806 539 --------GSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGN---------GTPRGKKDAATALFNLSI 597 (729)
Q Consensus 539 --------~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~~---------~~~~v~~~Al~aL~nLs~ 597 (729)
.+..++..++.+++|++.... .+. +......+++++.. .+.+....++.||++|..
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 245688889999999987321 111 12334455555542 256677777777777764
No 231
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=44.07 E-value=6.9 Score=28.94 Aligned_cols=13 Identities=38% Similarity=1.157 Sum_probs=11.4
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4899999999985
No 232
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.99 E-value=68 Score=29.73 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHH-HHHHHcC---CCHHHHHHHHHHHHHhh
Q 004806 442 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHN-MDNRMVIANCGAINI-LVDMLHS---SETKIQENAVTALLNLS 514 (729)
Q Consensus 442 ~~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~-Lv~LL~s---~d~~v~e~Al~aL~nLs 514 (729)
.+..++.|.+.|+ ..++.+|..|+..|-.+.++. ......++...++.. |+.++.. .+..|++.++..|...+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3678899999998 478999999999999998864 445556777788887 8888842 34688888888887664
No 233
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=42.89 E-value=41 Score=30.84 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=50.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCC-CHHHHHHhhh-----CCC---HHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEG-AVPPLVALSQ-----SGT---PRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G-~v~~Lv~Ll~-----sg~---~rvr~~A~~lL~~L~ 719 (729)
++..|.+-|...++.++..|+.+|-.||.+.. ..+..+.+.- .|..|...-. .|. ..||.+|.+++.+|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 36678888888899999999999999998764 4444444431 2222222111 122 469999999999998
Q ss_pred cCcCc
Q 004806 720 NQRHG 724 (729)
Q Consensus 720 ~~~~~ 724 (729)
.....
T Consensus 130 d~~~~ 134 (140)
T 1vdy_A 130 SEENG 134 (140)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 86543
No 234
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.78 E-value=34 Score=33.61 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=56.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+. ....|.....+..|+.++... ...|++++.+++.....
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 366778888899999999999999999988753 556666666788888887754 47899999888876654
No 235
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.72 E-value=25 Score=34.89 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=56.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcC
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~ 721 (729)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .....|.....+..|..++... .+.|++++..++......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999988888754 3556666666777788887654 478999999988876543
No 236
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=39.28 E-value=6.3e+02 Score=31.50 Aligned_cols=257 Identities=12% Similarity=0.076 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc---
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN--- 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~--- 519 (729)
+....++++.+.-....+|...+..|=.+..++. +. .++..|..+|.. ++.+....+.+|.||..+++.
T Consensus 156 ~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~-H~------~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~ 227 (1323)
T 3s4w_B 156 KDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQ-HA------NVGKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSK 227 (1323)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGG-HH------HHHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchh-hH------HHHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHH
Confidence 5677888888876666788888888888877542 21 245677788765 455777888889888777644
Q ss_pred -HHHHHh------cCCHHHHHHHhc-CCCHHHHHHHHHHHHH-h--cc---C---cchhhhhhccC--------------
Q 004806 520 -KSAIAN------ANAIEPLIHVLQ-TGSPEARENAAATLFS-L--SV---I---EDNKIKIGRSG-------------- 568 (729)
Q Consensus 520 -k~~I~~------~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~n-L--S~---~---~e~k~~I~~~g-------------- 568 (729)
+..+++ ...+|.++++|- +-+..-...++..|.. | .. . ...+..+-..|
T Consensus 228 vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~ 307 (1323)
T 3s4w_B 228 IRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKD 307 (1323)
T ss_dssp HHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHH
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccc
Confidence 333333 246888888653 3322211122222221 1 10 0 00011110001
Q ss_pred cHHHHHHhhcCC---CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHH
Q 004806 569 AIGPLVDLLGNG---TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 569 ~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
.+..+++.++.+ ...+..+-+++|.++....+ ..+++.++-++ ..+...+..+-.++.+.....--..
T Consensus 308 ~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~-------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~ 380 (1323)
T 3s4w_B 308 CIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE-------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQE 380 (1323)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT-------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCH
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc-------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchH
Confidence 112244444443 44444444555555543211 24555555433 3333445566666666554322211
Q ss_pred HHH----------hCCcHHHHH----HHHccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhCCCHHHH
Q 004806 644 AIG----------QENGIPVLV----EVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAK 708 (729)
Q Consensus 644 ~i~----------~~g~I~~Lv----~lL~s~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg~~rvr 708 (729)
.++ -....+.++ .++++.++.+++-+...-..+-..... .++.| +..|+..+.+|...-.
T Consensus 381 ~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeV-----l~~Lv~hi~sg~~~eV 455 (1323)
T 3s4w_B 381 QLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEV-----VGALVTHVCSGTEAEV 455 (1323)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHH-----HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHhhhcCCCcHHH
Confidence 111 122334444 345677888888777765555544333 23444 4555555556665555
Q ss_pred HHHHHHHHHhh
Q 004806 709 EKAQALLSYFR 719 (729)
Q Consensus 709 ~~A~~lL~~L~ 719 (729)
..|..+|..|.
T Consensus 456 d~ALdvL~~L~ 466 (1323)
T 3s4w_B 456 DTALDVLLELI 466 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 237
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=39.03 E-value=10 Score=28.72 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 238
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.83 E-value=9.2 Score=29.28 Aligned_cols=13 Identities=46% Similarity=0.938 Sum_probs=11.7
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999985
No 239
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=37.88 E-value=17 Score=30.96 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=37.1
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
-|.|--|-.-.+ =.|..+.|-.|+.|+..-+... ..||+|+.+|..+--
T Consensus 28 ~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSS-SEETTTTEECCCCSC
T ss_pred cccChhhccccC-CeeeecchhhHHHHHHHHHhhc-cCCcccCCcCCccee
Confidence 367888876555 3344567999999999988765 459999999977543
No 240
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=36.42 E-value=1.4e+02 Score=29.88 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHhcccCcH-HHHHHHHcCcHHHHHHhc-----C----CCHHHHHHHHHHHHHHhCCcc-hHHHHHh
Q 004806 579 NGTPRGKKDAATALFNLSIYHE-NKARIVQAGAVKHLVDLM-----D----PAAGMVDKAVAVLANLATIPD-GRVAIGQ 647 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~e-n~~~lv~~G~V~~Lv~LL-----~----~~~~v~e~Al~~L~nLa~~~e-~r~~i~~ 647 (729)
..++..+..++++++|+-.++. ++..+........+++.+ + .+..++..+..++.|++...- .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4567788899999999988887 666665443344444443 1 123455666778888876210 000 1
Q ss_pred CCcHHHHHHHHcc---------CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh-C-CCHHHHHHHHHH
Q 004806 648 ENGIPVLVEVVEL---------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-S-GTPRAKEKAQAL 714 (729)
Q Consensus 648 ~g~I~~Lv~lL~s---------~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~-s-g~~rvr~~A~~l 714 (729)
......+++.+.. .+.+....++.+|.+|...++..++. .+.+..+-.... . ..+|++..+.++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~---a~~~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF---ANSVTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCC---TTTCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHH---hccHHHHHHHHHHcccchHHHHHHHhc
Confidence 2234556665542 37788899999999999766532211 223444444432 2 357888877664
No 241
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=35.33 E-value=1.7e+02 Score=31.66 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC---------CCHHHHHHHHHHHHHHhCCcch-HHHHHh
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD---------PAAGMVDKAVAVLANLATIPDG-RVAIGQ 647 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~---------~~~~v~e~Al~~L~nLa~~~e~-r~~i~~ 647 (729)
...+..+..++++|+||-..+.....++. ......+++.+. .+..++..+..++.|++...-. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 45678888999999999887774444443 323455565541 1234555666777788762110 00 1
Q ss_pred CCcHHHHHHHHc---------cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC--CCHHHHHHHHHH
Q 004806 648 ENGIPVLVEVVE---------LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS--GTPRAKEKAQAL 714 (729)
Q Consensus 648 ~g~I~~Lv~lL~---------s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s--g~~rvr~~A~~l 714 (729)
...+..+++.+. ..+.++...++.+|.+|....+..+.... .+..+-..... ..+|++..+.++
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~---~~~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN---SVTWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHT---TCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhc---CHHHHHHHHHhcccchHHHHHHHhc
Confidence 223456666665 25888999999999999986664333332 24444444321 357888777654
No 242
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.35 E-value=1.2e+02 Score=32.16 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc-CCHHHHHHHhcC
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQT 538 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv-~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-g~I~~Lv~lL~s 538 (729)
+.-++..||.+..+.... +.+..++ ..+.+..+..+--++++|+|+-.++.....++.. .....++..+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 455777777777654321 2333333 2333456778889999999998877743444332 223344544421
Q ss_pred --------CCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhc---------CCCHHHHHHHHHHHHhccc
Q 004806 539 --------GSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLG---------NGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 539 --------~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~---------~~~~~v~~~Al~aL~nLs~ 597 (729)
.+..++..++.+++|+|.... .+.. ......+++++. ..+.+....++.||.+|..
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 135688888999999987321 1111 234455666555 2477788888888888865
No 243
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=34.17 E-value=12 Score=28.34 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 244
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.94 E-value=13 Score=30.84 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=11.7
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 245
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.94 E-value=14 Score=32.68 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=40.7
Q ss_pred CCcccccCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 138 PSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 138 p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
|+-|.|..|...+.| ......|..||+.+-.+-+... ..|-.|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~-~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC-CSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC-CccccCCCCcCchhe
Confidence 456999999999974 5667899999999988876532 259999998876544
No 246
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=33.58 E-value=22 Score=31.35 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCcccccCccccccC-ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTD-PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
|+-|.|..|...+.+ +.....|..||+.+-.+-+ +..|+.|++++...
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCTT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCcC
Confidence 567999999988876 6667899999999865533 35699999988753
No 247
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.36 E-value=12 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=11.5
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4899999999985
No 248
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.21 E-value=18 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=23.3
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWID----LGLFVCPKTRQTLAH 187 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~----~~~~~cP~t~~~l~~ 187 (729)
.|.|++|+..|...- .+..+.. .....||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY-----------YLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHH-----------HHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChH-----------HHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 478998887776542 3444433 334569999887654
No 249
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.06 E-value=14 Score=29.75 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 4899999999985
No 250
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=30.35 E-value=44 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=29.1
Q ss_pred CcccccCccccccCceecCC----CccccHHHHHHHHhc
Q 004806 139 SDFCCPLSLELMTDPVIVAS----GQTYERAFIKKWIDL 173 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~----G~ty~r~~I~~~~~~ 173 (729)
.-++|-||.+=++|--.+.| +|.||-.|-..+++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 46899999999999876643 799999998888864
No 251
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.95 E-value=89 Score=28.94 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=53.6
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCC-HhhHHHHHhCCCHHH-HHHhhhC-C--CHHHHHHHHHHHHHhhc
Q 004806 650 GIPVLVEVVE-LGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPP-LVALSQS-G--TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 650 ~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~-~~~~~~vl~~G~v~~-Lv~Ll~s-g--~~rvr~~A~~lL~~L~~ 720 (729)
++..|.+.|. ..++.++..|+.+|-.+..+. ......|.....+.. |+.++.. . ...|++++..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3567888887 488999999999998888886 456666777677777 7887743 2 35899999888876554
No 252
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.59 E-value=17 Score=30.60 Aligned_cols=13 Identities=46% Similarity=1.076 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 004806 136 PIPSDFCCPLSLE 148 (729)
Q Consensus 136 ~~p~~f~CpI~~~ 148 (729)
++|+++.||+|+.
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999985
No 253
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=28.33 E-value=4.6e+02 Score=26.17 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
..+++.++.+....+.++|+..+..|...++..++.-... ++.|..+|.++++.+...++.+..++
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~-----l~~L~~Ll~d~d~~V~K~~I~~~~~i--------- 117 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV-----INVVSMLLRDNSAQVIKRVIQACGSI--------- 117 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHH---------
Q ss_pred HHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~--~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.+.+++.+-... .+..+.....+..+ =..++.++.+++..++..|+..+..+
T Consensus 118 ------Y~~~l~~i~~~~~~~~~~~~~W~~m~~l---------------K~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 118 ------YKNGLQYLCSLMEPGDSAEQAWNILSLI---------------KAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp ------HHHHHHHHTTSSSCCHHHHHHHHHHHHH---------------HHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCCCcchHHHHHHHHHHH---------------HHHHHHHHccCCcchHHHHHHHHHHH
No 254
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=28.31 E-value=1.5e+02 Score=31.55 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHHcC-cHHHHHHhc----C-----CCHHHHHHHHHHHHHHhCCcch-HHHHHh
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQAG-AVKHLVDLM----D-----PAAGMVDKAVAVLANLATIPDG-RVAIGQ 647 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G-~V~~Lv~LL----~-----~~~~v~e~Al~~L~nLa~~~e~-r~~i~~ 647 (729)
...+..+..++++|+||-.++.....++... ....+++.+ . .+..++..+..++.|++...-. +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4567888899999999988777444444321 233344433 1 1234555666777788762110 00 1
Q ss_pred CCcHHHHHHHHc---------cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC--CCHHHHHHHHHH
Q 004806 648 ENGIPVLVEVVE---------LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS--GTPRAKEKAQAL 714 (729)
Q Consensus 648 ~g~I~~Lv~lL~---------s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s--g~~rvr~~A~~l 714 (729)
...+..+++.+. ..+.++...++.+|.+|...++..++.. +.+..+-..... ..+|++..+.++
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a---~~~~~~~~~~~~~~~e~R~~~v~~ei 361 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFA---NSVTWLANIKRSYGNVPRFKDIFDDL 361 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTG---GGCHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHh---cCHHHHHHHHHhcccchHHHHHHHhc
Confidence 223456666665 2588899999999999998665433222 123444444321 347777766553
No 255
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.63 E-value=38 Score=29.96 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=39.1
Q ss_pred CCcccccCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 138 PSDFCCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 138 p~~f~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
|+-|.|..|...+. .+.....|..||+.+-.+-+... ..|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-GLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-EECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-cChhhcCCccCc
Confidence 67799999999885 36778899999999987766431 269999998865
No 256
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=26.00 E-value=62 Score=30.51 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=30.8
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
|+-|.|..|...+.+--....|..||+.+-.+- -...|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~---f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR---FGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHT---TSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCccccc---cccccccCCCccCCC
Confidence 456778777776665434457778887765432 234588888776543
No 257
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.94 E-value=70 Score=22.97 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=25.5
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHh-c----CCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWID-L----GLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~-~----~~~~cP~t~~~l~~ 187 (729)
..|.|++|...|.. +..+.+|+. . ....|+.|+..+..
T Consensus 11 k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 45889988776653 455667764 2 23569999987753
No 258
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.70 E-value=19 Score=31.28 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.4
Q ss_pred CCCCCCCCccCCC
Q 004806 175 LFVCPKTRQTLAH 187 (729)
Q Consensus 175 ~~~cP~t~~~l~~ 187 (729)
+..||+|++++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3469999999874
No 259
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.52 E-value=68 Score=29.79 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=38.0
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
|+-|.|..|...+.+--....|..||+.+-.+-+. ..|..|++++...+
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 79 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTTS
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCCc
Confidence 67799999998887655567899999998766553 46999998876543
No 260
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.41 E-value=4.9 Score=34.45 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=25.9
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
..||.|+..|. + ..|+.+|..|=..+... ..||.|+++|.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~~--a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEMK--ALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEEE--EECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhcc--ccCcchhhHHH
Confidence 68999998764 2 24444577773322222 35999999885
No 261
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.85 E-value=25 Score=33.58 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCcccccCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
|+-|.|..|...+.+ +.....|..||+.|-.+-+... ..|+.|++++...
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~-~~C~~C~~~I~~~ 82 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GACSACGQSIPAS 82 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-EECTTTCCEECTT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccC-CccccCCCccccC
Confidence 577999999999875 7888899999999977765421 1599999988653
No 262
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.40 E-value=2.1e+02 Score=30.67 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
.+.|-.|+...+....+.+...+..++.|..+... . .-..+++.++.+-...+.+++...+..|...+.. .+.
T Consensus 24 ~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dp--s--Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el-- 97 (386)
T 3o2t_A 24 SERVVDLLNQAALITNDSKITVLKQVQELIINKDP--T--LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL-- 97 (386)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCG--G--GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG--
T ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCH--H--HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH--
Confidence 45556666665532335788889999987664321 1 2247899999999988999999999888777532 111
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh--------ccCcchh---hhhhc--cCcHHHHHHhhcCCCHHHHHHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSL--------SVIEDNK---IKIGR--SGAIGPLVDLLGNGTPRGKKDA 588 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL--------S~~~e~k---~~I~~--~g~I~~Lv~LL~~~~~~v~~~A 588 (729)
-..+++.|..+|++.++.+...+..+..++ +.+.... ...=+ ...-..++.++.+++..++..|
T Consensus 98 ---~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 98 ---LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp ---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 124577788888888887776666554443 1111110 00000 1233345666777888888888
Q ss_pred HHHHHhccc--Cc---H-----------------------HHHHHHH--cCcHHHHHHhcC---CCHHHHHHHHHHHHHH
Q 004806 589 ATALFNLSI--YH---E-----------------------NKARIVQ--AGAVKHLVDLMD---PAAGMVDKAVAVLANL 635 (729)
Q Consensus 589 l~aL~nLs~--~~---e-----------------------n~~~lv~--~G~V~~Lv~LL~---~~~~v~e~Al~~L~nL 635 (729)
+..+..+.. .+ + +...+-. .+.+..|+.++. ........++..|.+|
T Consensus 175 iKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~I 254 (386)
T 3o2t_A 175 IKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANI 254 (386)
T ss_dssp HHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 876665421 10 0 1122222 557777777773 2334555567777777
Q ss_pred hC
Q 004806 636 AT 637 (729)
Q Consensus 636 a~ 637 (729)
+.
T Consensus 255 ak 256 (386)
T 3o2t_A 255 AR 256 (386)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 263
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.25 E-value=45 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=22.9
Q ss_pred cccccCccccc-cCceecCCCccccHHHHHHHHh---cCCCCCCCCCccCCC
Q 004806 140 DFCCPLSLELM-TDPVIVASGQTYERAFIKKWID---LGLFVCPKTRQTLAH 187 (729)
Q Consensus 140 ~f~CpI~~~lm-~dPV~~~~G~ty~r~~I~~~~~---~~~~~cP~t~~~l~~ 187 (729)
.|.|++|...| . .+..+..+.. .....|+.|++.+..
T Consensus 34 ~~~C~~C~k~F~~-----------~~~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRK-----------TIEGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEES-----------SHHHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred CcCCCCCCCCccc-----------CHHHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 37788766544 2 3445555543 345679999887654
No 264
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.94 E-value=37 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=23.7
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWID----LGLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~----~~~~~cP~t~~~l~~ 187 (729)
|.|++|+..|..+ ..+..+.. ..+..|+.|+..+..
T Consensus 5 y~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 5 FFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp EECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred ccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 7788877766554 34555543 344569999987754
No 265
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=20.16 E-value=2.9e+02 Score=24.70 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 004806 44 EQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEA 87 (729)
Q Consensus 44 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~l~l~~~~~~~~e~ 87 (729)
+++.+.|.+.+.++.. +..|+...|+.++.-+...+
T Consensus 15 ~e~~e~I~~~i~~G~s--------l~~i~~~~~~ps~~T~~~W~ 50 (140)
T 4dyq_A 15 PEVADDICSLLSSGES--------LLKVCKRPGMPDKSTVFRWL 50 (140)
T ss_dssp TTHHHHHHHHHHTTCC--------HHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCc--------HHHHHhcCCCCCHHHHHHHH
Confidence 5677888888877654 78888888987766654433
No 266
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.12 E-value=37 Score=29.13 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=11.1
Q ss_pred ccHHHHHHHHhc
Q 004806 162 YERAFIKKWIDL 173 (729)
Q Consensus 162 y~r~~I~~~~~~ 173 (729)
|||.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 267
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.09 E-value=24 Score=25.51 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=23.0
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~ 187 (729)
|.|++|+..|..+ ..+..+... ....|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 6788877766543 445556543 23459999887654
Done!