BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004807
(729 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09621|LACT2_CAEEL Beta-lactamase domain-containing protein 2 OS=Caenorhabditis
elegans GN=lact-2 PE=4 SV=1
Length = 473
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 21/273 (7%)
Query: 249 GIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL 308
G + Y VI+D G + R PD+ VFS TK + A + LVD G +
Sbjct: 91 GASITVYHKDRVIVDLQGGYADKASGRKWTPDTRTVVFSTTKAVGAVCVAMLVDRGHISY 150
Query: 309 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA 368
++ ++ IWPEF NGK+ I + +++H +GL + + ++ E+ D+++ IA
Sbjct: 151 DDKMSKIWPEFAQNGKENITIDWLMSHRAGLAALDMPITIEDA---NDFEKMSEVIASQK 207
Query: 369 PETEPGQEQLYHYLSFGWLCGGIIERA--SGKKFQEILEEGIIQPLSIDGELYIGIPPGV 426
P EPG + YH +++GW+ I+ R+ G+ +E + ID +IG+PP
Sbjct: 208 PNWEPGTKSGYHAITYGWIVDQIVRRSDPKGRSVGRFFKEEVADVHGID--FHIGLPPSE 265
Query: 427 ESRLASLTIDTDDLNKVSGINNRPDLRLPSSF----QPDKISQLAAITPA---------V 473
E ++ L++ + L+ V I + P + + + P+ I++ A P
Sbjct: 266 EHTVSRLSMPS-TLHLVREIVHDPRVLIVLAVFNLRPPNSIARKIAANPTWFKLEQDVNT 324
Query: 474 FNMLNIRRAIIPAANGHCSARALARYYAALADG 506
FN + AA G +R LAR ++ + G
Sbjct: 325 FNNPTLHAMEQVAALGITKSRDLARLFSLVQQG 357
>sp|Q9KX40|ESTB_BURGA Esterase EstB OS=Burkholderia gladioli GN=estB PE=1 SV=1
Length = 392
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 246 KILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK 305
+++G + GE++ + G+ R RP++ D+LF + SVTK I A + LV G+
Sbjct: 34 RLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGE 93
Query: 306 LKLEENIANIWPEFKSNGKD----LIKVHHVLNHTSGLHNVSVD----------LSSENP 351
L L+ + PEF+ D L+ +HH+L HTSGL ++ +S
Sbjct: 94 LALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGID 153
Query: 352 LLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQP 411
L D DE L R+A + PG Y L+ + G ++ERA+G+ ++ + QP
Sbjct: 154 LRDFDLDENLRRLASAPLSFAPGSGWQYS-LALD-VLGAVVERATGQPLAAAVDALVAQP 211
Query: 412 LSI 414
L +
Sbjct: 212 LGM 214
>sp|Q54TR5|ABKB_DICDI Probable serine/threonine-protein kinase abkB OS=Dictyostelium
discoideum GN=abkB PE=3 SV=1
Length = 668
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 25/202 (12%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
+ G+R+++ E L+ G++ +++ + +A QI+V GF + DPHPGN LV K P +P
Sbjct: 436 IHGVRIDNREGLDKLGIDLKELYYLFSDIFAQQIFVHGFLHSDPHPGNLLVRKTPNGKPD 495
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF-AEMGLRLRLDVPEQAMEVST 117
+LLD GL KK+ +++ ++ + GD A S F AE RL A +
Sbjct: 496 LVLLDHGLYKKIDENVRLDFCHLWKSLCLGD--AKTSEFYAE-----RLGAGIYAKHLGI 548
Query: 118 LFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRV 177
L + + E +K E + + L VI E +K P +I++ +
Sbjct: 549 LLNLNPSKSRENLRNMK--RELKDQTLVVINEILK-------------NLPKEILLVLKT 593
Query: 178 LNLLRGLSSTMNVRIVYLDIMR 199
NL+R +++ + +L++ +
Sbjct: 594 NNLIRQITTHFGIENGFLNMAK 615
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
+ GI+++D ++LE G+N V++ AY Q+ VDGFF DPHPGN V D I
Sbjct: 252 LPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAV--DSQGDLI 309
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL 102
DFG ++ K + + FFA D +L A MGL
Sbjct: 310 FYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGL 351
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ E+L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ E+L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L A GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+R++ + L A GV+ K+ + + Q++ DGFF+ D HPGN LVS P R
Sbjct: 244 MHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGR 303
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH--VALL 94
I LDFG+ LS K LA+ F A + D+ VALL
Sbjct: 304 YIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALL 341
>sp|Q3MIX3|ADCK5_HUMAN Uncharacterized aarF domain-containing protein kinase 5 OS=Homo
sapiens GN=ADCK5 PE=2 SV=2
Length = 580
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
G ++ND E++ + G+ + E++ +A+A QI+ GF + DPHPGN LV K P + +
Sbjct: 320 GCKVNDVEAIRSQGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELV 379
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAME 114
LLD GL + L + AL +++ A D A+ + A +G++ L E M+
Sbjct: 380 LLDHGLYQFLEEKDRAALCQLWRAIILRDDAAMRAHAAALGVQDYLLFAEMLMQ 433
>sp|Q80V03|ADCK5_MOUSE Uncharacterized aarF domain-containing protein kinase 5 OS=Mus
musculus GN=Adck5 PE=2 SV=2
Length = 582
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 2 DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP-- 59
+G ++ND E +++ G+ Q V +++ + +A QI+ GF + DPHPGN LV K P +
Sbjct: 319 NGCKVNDMEGIKSQGLAVQDVAKKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAEL 378
Query: 60 ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAME 114
+LLD GL + L + +L +++ A D+ A+ A +G++ + E M+
Sbjct: 379 VLLDHGLYQFLDEKDRSSLCQLWRAIILRDNAAMKKHAAALGVQDYMLFSEVLMQ 433
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ ++L GV+ K+ E + Q++ DGFF+ D HPGN VS DP H R
Sbjct: 243 MVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGR 302
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ LS K LA+ F A + D+
Sbjct: 303 YIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
>sp|A7MQL5|UBIB_CROS8 Probable ubiquinone biosynthesis protein UbiB OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=ubiB PE=3 SV=1
Length = 546
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI +ND +LEA G + + + E + + Q++ D FF+GD HPGN VS D PH P I
Sbjct: 248 GIPVNDVAALEANGTDMKLLAERGVQVFFTQVFRDSFFHGDMHPGNIFVSHDHPHDPQYI 307
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
+D G+ L+ K+ LA+ F A D+
Sbjct: 308 GIDCGIVGSLNKEDKRYLAENFIAFFNRDY 337
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
MDG ++D L+A G++ K+ + + Q++ DGFF+ D HPGN LV+ D +R I
Sbjct: 241 MDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAAD--NRYI 298
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
LDFG+ L+ K+ LA F A D+ + +A E G
Sbjct: 299 ALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESG 339
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILL 62
GI++++ + L G + +++ +++T +Y Q++ DGFF+GDPHPGN L+ ++ +
Sbjct: 224 GIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLIREN---HICYI 280
Query: 63 DFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLR 103
DFG+ +S S+K +L A A D ++S +G++
Sbjct: 281 DFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGVK 321
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 28/217 (12%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ E+L A G++ K+ + + Q++ DGFF+ D HPGN +VS P R
Sbjct: 240 MHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVSTAPATFGR 299
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTL 118
I LDFG+ L S K+ LA+ F A D+ + E G VP
Sbjct: 300 YIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGW-----VP--------- 345
Query: 119 FFRTSAPANEAFETVKNLSE----QRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIF 174
S +E V+ + E + K++ + Q ++L Q +RFN V+ P +++
Sbjct: 346 ---ASTRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTS-RRFN-VEIQPQLVLLQ 400
Query: 175 SRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVL--QVG 209
+LN + GL ++ + +PF E + QVG
Sbjct: 401 KTLLN-VEGLGRQLDPELDLWQTAKPFLERWMNEQVG 436
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
MDG + D L+A G++ K+ + + Q++ DGFF+ D HPGN LV+ D +R I
Sbjct: 241 MDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAAD--NRYI 298
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
LDFG+ L+ K+ LA F A D+ + +A E G
Sbjct: 299 ALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESG 339
>sp|Q5ZMT7|ADCK1_CHICK Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus
gallus GN=ADCK1 PE=2 SV=1
Length = 519
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP---PH 57
M+G ++ND +E G++ ++ + + Y+ I+V+GF + DPHPGN LV K P
Sbjct: 263 MEGGQVNDKAYMEKNGIDVNEISRNLGKLYSEMIFVNGFVHCDPHPGNVLVKKCPDSGKA 322
Query: 58 RPILLDFGLTKKLSSSMKQALAKMFFAAAEGD 89
ILLD GL + LS S + +++ A + D
Sbjct: 323 YIILLDHGLYQVLSESFRMDYCRLWLALIKAD 354
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
+DGI ++D E+L A G N + + E + Q++ D FF+ D HPGN +S++ P P
Sbjct: 245 IDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFISREHPENPF 304
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LD G+ L+ K+ LA+ F A D+ + + E G
Sbjct: 305 YIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESG 347
>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
Length = 549
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
+DGI ++D +LEA G N + + E + Q++ D FF+ D HPGN VS++ P+ P+
Sbjct: 245 IDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFVSREHPNDPL 304
Query: 61 L--LDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
LD G+ L+ K+ LA+ F A D+ + + E G
Sbjct: 305 YIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIESG 347
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|B8CI04|UBIB_SHEPW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1
Length = 549
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
+DG+ ++D +LEA G N + + E + Q++ D FF+ D HPGN VS++ P+ P
Sbjct: 245 IDGVPVSDKAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFVSREHPNDPF 304
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LD G+ L+ K+ LA+ F A D+ + + E G
Sbjct: 305 YIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESG 347
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILL 62
GI+++ ++LEA G+ ++++ + RAY Q+ GFF+ DPHPGN VS + I
Sbjct: 277 GIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGEL-IFY 335
Query: 63 DFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
DFG+ +++ K L F AE + ++++ +G
Sbjct: 336 DFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALG 374
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|A8H968|UBIB_SHEPA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=ubiB PE=3
SV=1
Length = 549
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
+DGI ++D +LEA G N + + E + Q++ D FF+ D HPGN VS++ P+ P
Sbjct: 245 IDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNVFVSREHPNDPF 304
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LD G+ L+ K+ LA+ F A D+ + + E G
Sbjct: 305 YIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESG 347
>sp|A1RP80|UBIB_SHESW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain W3-18-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|A4Y2Q3|UBIB_SHEPC Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3
SV=1
Length = 549
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S+D P P I
Sbjct: 247 GIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|B5XYH9|UBIB_KLEP3 Probable ubiquinone biosynthesis protein UbiB OS=Klebsiella
pneumoniae (strain 342) GN=ubiB PE=3 SV=1
Length = 546
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D E+LEA G N Q + E + + Q++ D FF+ D HPGN VS + P P I
Sbjct: 248 GIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPEDPQYI 307
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
+D G+ L+ K+ LA+ F A D+
Sbjct: 308 GIDCGIVGSLNKEDKRYLAENFIAFFNRDY 337
>sp|A6TGL5|UBIB_KLEP7 Probable ubiquinone biosynthesis protein UbiB OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=ubiB PE=3 SV=1
Length = 546
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D E+LEA G N Q + E + + Q++ D FF+ D HPGN VS + P P I
Sbjct: 248 GIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPEDPQYI 307
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
+D G+ L+ K+ LA+ F A D+
Sbjct: 308 GIDCGIVGSLNKEDKRYLAENFIAFFNRDY 337
>sp|A7MTX4|UBIB_VIBHB Probable ubiquinone biosynthesis protein UbiB OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=ubiB PE=3 SV=1
Length = 544
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPIL- 61
GI+++D E LEA G N + + E + Q++ D FF+ D HPGN V + P P+
Sbjct: 247 GIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVKPEHPENPMWI 306
Query: 62 -LDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
LD G+ L+S K+ LA+ F A D+
Sbjct: 307 GLDCGIVGTLNSEDKRYLAENFLAFFNRDY 336
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPIL- 61
GI+++D E LEA G N + + E + Q++ D FF+ D HPGN V + P P+
Sbjct: 247 GIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVKPEHPENPMWI 306
Query: 62 -LDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
LD G+ L+S K+ LA+ F A D+
Sbjct: 307 GLDCGIVGTLNSEDKRYLAENFLAFFNRDY 336
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S++ P P I
Sbjct: 247 GIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISREHPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
++GI ++D +L+A G N + + E + Q++ D FF+ D HPGN VS++ P P
Sbjct: 245 IEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFHADMHPGNIFVSREHPEDPY 304
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LD G+ L+ K+ LA+ F A D+ + + E G
Sbjct: 305 YIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIESG 347
>sp|Q8E9R5|UBIB_SHEON Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
oneidensis (strain MR-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--I 60
GI ++D +L+A G N + + E + Q++ D FF+ D HPGN +S++ P P I
Sbjct: 247 GIPVSDIVALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRENPENPYYI 306
Query: 61 LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL---RLRLDVPEQAMEV 115
LD G+ LS K+ LA+ F A D+ + + E G + L EQA++V
Sbjct: 307 GLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKV 364
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--- 59
GI +D L+A G++++ + + R + Q++ D FF+ D H GN V DP R
Sbjct: 249 GIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPR 308
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LDFG+ +LS + LA+ F A D+ + E G
Sbjct: 309 FIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAG 351
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--- 59
GI +D L+A G++++ + + R + Q++ D FF+ D H GN V DP R
Sbjct: 249 GIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPR 308
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LDFG+ +LS + LA+ F A D+ + E G
Sbjct: 309 FIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAG 351
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
M G+ ++ E L GV+ K+ + + Q++ DGFF+ D HPGN +VS +P R
Sbjct: 244 MTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVSLEPETFGR 303
Query: 59 PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
I LDFG+ L+ K+ LA+ F A D+
Sbjct: 304 YISLDFGIVGTLTEYDKEYLAQNFTAFFRRDY 335
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--- 57
M GI +D L+A G++++ + + R + Q++ D FF+ D H GN V DP
Sbjct: 242 MYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSN 301
Query: 58 -RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
R I+LDFG+ +LS + LA+ F A D+ + E G
Sbjct: 302 PRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAG 346
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--- 57
M GI +D L+A G++++ + + R + Q++ D FF+ D H GN V DP
Sbjct: 242 MYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSN 301
Query: 58 -RPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
R I+LDFG+ +LS + LA+ F A D+ + E G
Sbjct: 302 PRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAG 346
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--- 59
GI +D L+A G++++ + + R + Q++ D FF+ D H GN V DP R
Sbjct: 249 GIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPR 308
Query: 60 -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101
I LDFG+ +LS + LA+ F A D+ + E G
Sbjct: 309 FIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAG 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,406,809
Number of Sequences: 539616
Number of extensions: 12945253
Number of successful extensions: 35945
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 35666
Number of HSP's gapped (non-prelim): 308
length of query: 729
length of database: 191,569,459
effective HSP length: 125
effective length of query: 604
effective length of database: 124,117,459
effective search space: 74966945236
effective search space used: 74966945236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)