Query 004807
Match_columns 729
No_of_seqs 447 out of 3661
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 13:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11289 ampC beta-lactamase/D 100.0 4.2E-49 9.1E-54 430.1 31.5 242 227-512 28-270 (384)
2 PRK10662 beta-lactam binding p 100.0 9.6E-49 2.1E-53 427.6 31.8 250 223-512 24-277 (378)
3 PRK03642 putative periplasmic 100.0 7.2E-48 1.6E-52 427.9 30.5 270 228-512 37-323 (432)
4 PRK13128 D-aminopeptidase; Rev 100.0 1.9E-46 4.2E-51 420.2 30.3 238 231-507 6-246 (518)
5 PF00144 Beta-lactamase: Beta- 100.0 7.3E-46 1.6E-50 400.0 11.4 244 234-512 1-244 (329)
6 COG1680 AmpC Beta-lactamase cl 100.0 2.5E-39 5.3E-44 357.8 25.5 235 248-512 54-293 (390)
7 COG0661 AarF Predicted unusual 100.0 3.4E-30 7.5E-35 286.6 18.2 193 1-213 248-442 (517)
8 PRK04750 ubiB putative ubiquin 100.0 4.8E-30 1E-34 287.6 15.4 199 1-217 243-445 (537)
9 TIGR01982 UbiB 2-polyprenylphe 99.9 2.5E-25 5.5E-30 247.2 18.4 194 1-214 240-435 (437)
10 KOG1235 Predicted unusual prot 99.9 5.3E-24 1.1E-28 235.9 16.2 200 1-207 284-485 (538)
11 KOG1234 ABC (ATP binding casse 99.7 4.9E-17 1.1E-21 161.4 10.8 189 1-201 169-357 (363)
12 KOG1236 Predicted unusual prot 99.7 2.6E-16 5.6E-21 164.6 12.2 187 2-204 328-557 (565)
13 PF06176 WaaY: Lipopolysacchar 98.9 1.5E-09 3.3E-14 107.6 7.2 60 1-70 125-184 (229)
14 PRK10359 lipopolysaccharide co 98.6 3.9E-08 8.6E-13 99.3 5.8 68 1-78 125-192 (232)
15 cd05145 RIO1_like RIO kinase f 98.4 2.5E-07 5.5E-12 91.7 5.9 71 18-98 118-188 (190)
16 cd05144 RIO2_C RIO kinase fami 98.4 6E-07 1.3E-11 89.6 7.7 69 17-88 125-197 (198)
17 smart00090 RIO RIO-like kinase 98.3 2E-06 4.4E-11 88.2 7.8 73 20-103 151-224 (237)
18 PF01163 RIO1: RIO1 family; I 98.2 3E-06 6.6E-11 83.4 6.4 91 3-103 92-182 (188)
19 PRK15442 beta-lactamase TEM; P 98.1 0.00026 5.7E-09 74.4 20.4 36 278-313 57-92 (284)
20 cd05147 RIO1_euk RIO kinase fa 98.0 8.9E-06 1.9E-10 80.6 6.6 56 15-73 112-170 (190)
21 COG1686 DacC D-alanyl-D-alanin 98.0 4.2E-05 9.1E-10 83.5 10.9 115 256-419 47-163 (389)
22 cd05119 RIO RIO kinase family, 97.9 2.3E-05 5.1E-10 77.0 6.4 61 17-80 114-174 (187)
23 PF00768 Peptidase_S11: D-alan 97.9 7.5E-05 1.6E-09 76.6 10.2 54 247-313 9-64 (240)
24 PRK10001 D-alanyl-D-alanine ca 97.8 7.4E-05 1.6E-09 81.9 10.0 45 256-313 48-92 (400)
25 TIGR03724 arch_bud32 Kae1-asso 97.7 0.00013 2.8E-09 72.5 8.0 49 21-73 94-142 (199)
26 PRK14879 serine/threonine prot 97.7 0.0002 4.4E-09 71.8 9.5 65 2-72 82-146 (211)
27 PRK10793 D-alanyl-D-alanine ca 97.6 0.00044 9.6E-09 76.0 11.8 45 256-313 55-99 (403)
28 cd05151 ChoK Choline Kinase (C 97.6 3.3E-05 7.1E-10 74.5 2.7 49 20-71 90-138 (170)
29 PRK12274 serine/threonine prot 97.5 0.00024 5.2E-09 70.8 7.7 71 21-99 95-166 (218)
30 PRK11397 dacD D-alanyl-D-alani 97.5 0.00064 1.4E-08 74.3 10.7 45 256-313 45-89 (388)
31 PRK11669 pbpG D-alanyl-D-alani 97.4 0.00054 1.2E-08 72.3 8.9 41 256-313 50-90 (306)
32 PRK01723 3-deoxy-D-manno-octul 97.3 0.00087 1.9E-08 69.0 9.2 48 21-71 146-193 (239)
33 PF06293 Kdo: Lipopolysacchari 97.0 0.001 2.3E-08 66.7 6.1 54 18-72 119-173 (206)
34 cd05146 RIO3_euk RIO kinase fa 96.8 0.0015 3.2E-08 64.8 4.7 52 20-74 127-178 (197)
35 PRK09605 bifunctional UGMP fam 96.8 0.0036 7.8E-08 72.4 8.4 51 19-73 430-480 (535)
36 PRK15123 lipopolysaccharide co 96.7 0.0047 1E-07 64.5 7.9 48 20-68 141-193 (268)
37 cd05120 APH_ChoK_like Aminogly 96.7 0.0021 4.5E-08 59.7 4.6 51 20-73 89-142 (155)
38 COG3642 Mn2+-dependent serine/ 96.6 0.0025 5.3E-08 61.7 4.5 45 20-68 95-139 (204)
39 COG0478 RIO-like serine/threon 96.5 0.0045 9.7E-08 63.4 6.3 89 1-102 189-277 (304)
40 PF01636 APH: Phosphotransfera 96.5 0.0021 4.5E-08 65.0 3.7 54 20-74 146-202 (239)
41 KOG0594 Protein kinase PCTAIRE 96.3 0.0034 7.3E-08 66.0 4.1 45 25-71 120-171 (323)
42 cd05609 STKc_MAST Catalytic do 96.3 0.0045 9.8E-08 65.8 5.1 43 23-68 107-149 (305)
43 cd00180 PKc Catalytic domain o 96.3 0.0053 1.1E-07 60.0 4.9 54 20-75 95-148 (215)
44 KOG0661 MAPK related serine/th 96.2 0.0033 7.2E-08 68.3 3.5 80 23-110 108-195 (538)
45 TIGR02172 Fb_sc_TIGR02172 Fibr 96.2 0.0037 8.1E-08 63.7 3.8 31 36-69 152-182 (226)
46 KOG0596 Dual specificity; seri 96.2 0.0034 7.5E-08 69.3 3.6 45 34-81 476-520 (677)
47 KOG1164 Casein kinase (serine/ 96.2 0.0043 9.4E-08 66.8 4.4 66 3-68 104-175 (322)
48 cd05122 PKc_STE Catalytic doma 96.2 0.0051 1.1E-07 62.5 4.5 57 16-74 94-152 (253)
49 KOG0608 Warts/lats-like serine 96.1 0.0083 1.8E-07 67.2 6.0 55 14-70 722-779 (1034)
50 PRK09188 serine/threonine prot 96.0 0.0081 1.7E-07 65.5 5.4 50 20-72 114-164 (365)
51 PRK10271 thiK thiamine kinase; 95.9 0.031 6.8E-07 54.8 8.1 35 37-74 77-111 (188)
52 KOG0603 Ribosomal protein S6 k 95.9 0.011 2.5E-07 66.5 5.6 51 21-73 419-469 (612)
53 PRK11768 serine/threonine prot 95.9 0.0073 1.6E-07 65.2 4.0 33 36-72 195-227 (325)
54 KOG0984 Mitogen-activated prot 95.8 0.013 2.8E-07 57.3 4.8 52 21-74 152-203 (282)
55 PHA02882 putative serine/threo 95.7 0.012 2.6E-07 62.3 5.0 48 21-71 130-177 (294)
56 KOG0660 Mitogen-activated prot 95.7 0.0088 1.9E-07 63.1 3.7 49 22-72 122-177 (359)
57 KOG0664 Nemo-like MAPK-related 95.7 0.022 4.7E-07 57.8 6.2 69 18-88 149-224 (449)
58 cd05155 APH_ChoK_like_1 Unchar 95.7 0.0068 1.5E-07 62.1 2.7 36 36-74 163-199 (235)
59 cd06625 STKc_MEKK3_like Cataly 95.6 0.014 3E-07 60.1 4.9 50 20-72 107-156 (263)
60 cd05152 MPH2' Macrolide 2'-Pho 95.6 0.031 6.8E-07 58.8 7.6 40 36-77 184-224 (276)
61 cd05154 ACAD10_11_like Acyl-Co 95.5 0.01 2.2E-07 59.6 3.3 39 36-74 173-211 (223)
62 KOG0670 U4/U6-associated splic 95.5 0.011 2.4E-07 64.9 3.6 52 26-78 537-595 (752)
63 cd05150 APH Aminoglycoside 3'- 95.4 0.032 7E-07 57.3 6.8 36 36-73 162-197 (244)
64 cd05627 STKc_NDR2 Catalytic do 95.4 0.017 3.6E-07 63.1 4.8 48 23-73 107-154 (360)
65 cd05602 STKc_SGK1 Catalytic do 95.4 0.014 3E-07 62.8 4.1 46 22-70 101-146 (325)
66 cd05581 STKc_PDK1 Catalytic do 95.4 0.013 2.9E-07 60.8 3.9 52 20-74 105-156 (280)
67 PRK05231 homoserine kinase; Pr 95.4 0.019 4.1E-07 61.7 4.9 35 35-72 185-220 (319)
68 PRK10345 hypothetical protein; 95.3 0.034 7.3E-07 55.9 6.2 49 22-70 109-159 (210)
69 cd05604 STKc_SGK3 Catalytic do 95.3 0.019 4.1E-07 61.7 4.7 46 21-69 100-145 (325)
70 cd05085 PTKc_Fer Catalytic dom 95.3 0.021 4.5E-07 58.4 4.8 39 31-71 106-144 (250)
71 cd05084 PTKc_Fes Catalytic dom 95.3 0.023 5.1E-07 58.2 5.1 47 22-71 99-145 (252)
72 COG2334 Putative homoserine ki 95.2 0.015 3.2E-07 62.5 3.6 29 39-69 199-228 (331)
73 cd05614 STKc_MSK2_N N-terminal 95.2 0.02 4.4E-07 61.6 4.7 46 22-70 110-155 (332)
74 cd05153 HomoserineK_II Homoser 95.1 0.013 2.8E-07 62.2 2.7 34 36-71 174-207 (296)
75 cd05601 STKc_CRIK Catalytic do 95.1 0.027 5.9E-07 60.5 5.3 47 23-72 108-154 (330)
76 cd05600 STKc_Sid2p_Dbf2p Catal 95.1 0.024 5.2E-07 61.1 4.8 48 22-72 106-153 (333)
77 cd05590 STKc_nPKC_eta Catalyti 95.0 0.024 5.2E-07 60.8 4.6 46 22-70 101-146 (320)
78 cd05115 PTKc_Zap-70 Catalytic 95.0 0.031 6.7E-07 57.7 5.2 48 21-71 99-146 (257)
79 KOG0592 3-phosphoinositide-dep 95.0 0.024 5.3E-07 62.7 4.4 51 23-76 180-230 (604)
80 cd05573 STKc_ROCK_NDR_like Cat 95.0 0.024 5.2E-07 61.4 4.5 48 22-72 106-153 (350)
81 cd06612 STKc_MST1_2 Catalytic 95.0 0.035 7.6E-07 56.8 5.5 51 21-74 103-153 (256)
82 cd05575 STKc_SGK Catalytic dom 95.0 0.025 5.4E-07 60.7 4.6 46 22-70 101-146 (323)
83 cd07878 STKc_p38beta_MAPK11 Ca 95.0 0.028 6.1E-07 60.8 5.0 49 21-72 122-170 (343)
84 cd05083 PTKc_Chk Catalytic dom 95.0 0.029 6.2E-07 57.6 4.8 48 21-71 104-151 (254)
85 PHA03207 serine/threonine kina 95.0 0.023 5.1E-07 62.9 4.3 50 20-72 188-237 (392)
86 KOG0983 Mitogen-activated prot 94.9 0.033 7.1E-07 56.7 4.7 37 35-73 209-245 (391)
87 cd07871 STKc_PCTAIRE3 Catalyti 94.9 0.024 5.2E-07 59.7 4.0 48 21-71 107-154 (288)
88 KOG0605 NDR and related serine 94.9 0.022 4.8E-07 63.0 3.7 43 31-75 254-296 (550)
89 cd05102 PTKc_VEGFR3 Catalytic 94.9 0.032 7E-07 60.1 5.1 48 22-72 179-226 (338)
90 PHA03212 serine/threonine kina 94.9 0.032 6.9E-07 61.9 5.1 46 21-69 186-231 (391)
91 cd05620 STKc_nPKC_delta Cataly 94.9 0.024 5.2E-07 60.7 4.0 45 22-69 101-145 (316)
92 cd05091 PTKc_Ror2 Catalytic do 94.9 0.032 7E-07 58.3 4.9 49 21-72 128-176 (283)
93 cd06605 PKc_MAPKK Catalytic do 94.9 0.026 5.7E-07 58.1 4.2 50 22-74 105-155 (265)
94 cd05040 PTKc_Ack_like Catalyti 94.8 0.035 7.5E-07 57.0 4.8 48 22-72 102-149 (257)
95 cd05066 PTKc_EphR_A Catalytic 94.8 0.035 7.5E-07 57.5 4.8 48 22-72 111-158 (267)
96 cd05624 STKc_MRCK_beta Catalyt 94.8 0.038 8.2E-07 59.6 5.3 47 23-72 108-154 (331)
97 PLN00034 mitogen-activated pro 94.8 0.026 5.6E-07 61.5 4.0 49 20-71 171-219 (353)
98 KOG2345 Serine/threonine prote 94.8 0.052 1.1E-06 54.7 5.6 54 17-72 124-181 (302)
99 PHA03210 serine/threonine kina 94.8 0.028 6E-07 64.5 4.3 49 21-72 271-319 (501)
100 PTZ00426 cAMP-dependent protei 94.8 0.031 6.8E-07 60.6 4.5 48 22-72 136-183 (340)
101 KOG4250 TANK binding protein k 94.7 0.052 1.1E-06 62.0 6.2 61 14-74 114-178 (732)
102 cd07874 STKc_JNK3 Catalytic do 94.7 0.037 8.1E-07 60.2 5.1 48 22-72 124-171 (355)
103 cd05598 STKc_LATS Catalytic do 94.7 0.033 7.1E-07 61.2 4.7 39 31-71 114-152 (376)
104 cd05571 STKc_PKB Catalytic dom 94.7 0.034 7.3E-07 59.7 4.7 45 22-69 100-144 (323)
105 cd06627 STKc_Cdc7_like Catalyt 94.7 0.035 7.7E-07 56.6 4.6 52 21-75 103-154 (254)
106 cd05628 STKc_NDR1 Catalytic do 94.7 0.033 7.2E-07 60.9 4.7 43 31-75 114-156 (363)
107 cd07862 STKc_CDK6 Catalytic do 94.7 0.029 6.2E-07 58.9 4.0 48 21-71 114-161 (290)
108 cd05071 PTKc_Src Catalytic dom 94.7 0.04 8.7E-07 57.0 5.1 50 20-72 105-154 (262)
109 cd05603 STKc_SGK2 Catalytic do 94.7 0.03 6.5E-07 60.0 4.3 45 22-69 101-145 (321)
110 cd06657 STKc_PAK4 Catalytic do 94.7 0.021 4.5E-07 60.4 3.0 49 22-73 121-169 (292)
111 cd05593 STKc_PKB_gamma Catalyt 94.7 0.032 7E-07 60.1 4.4 47 21-70 99-145 (328)
112 cd05618 STKc_aPKC_iota Catalyt 94.7 0.035 7.6E-07 59.8 4.7 45 22-69 101-145 (329)
113 cd05079 PTKc_Jak1_rpt2 Catalyt 94.7 0.042 9E-07 57.6 5.1 48 21-71 113-160 (284)
114 PF00069 Pkinase: Protein kina 94.7 0.027 5.9E-07 57.7 3.6 48 20-70 101-148 (260)
115 cd05583 STKc_MSK_N N-terminal 94.7 0.036 7.8E-07 58.1 4.6 48 22-72 110-157 (288)
116 cd05584 STKc_p70S6K Catalytic 94.6 0.035 7.6E-07 59.6 4.6 44 23-69 106-149 (323)
117 cd05096 PTKc_DDR1 Catalytic do 94.6 0.034 7.3E-07 59.0 4.4 49 21-72 142-190 (304)
118 PTZ00263 protein kinase A cata 94.6 0.034 7.4E-07 59.9 4.5 41 31-73 131-171 (329)
119 PRK12396 5-methylribose kinase 94.6 0.041 9E-07 60.2 5.0 52 36-90 226-279 (409)
120 cd05591 STKc_nPKC_epsilon Cata 94.6 0.036 7.7E-07 59.4 4.6 46 22-70 101-146 (321)
121 KOG1167 Serine/threonine prote 94.6 0.026 5.7E-07 60.6 3.4 38 31-69 145-182 (418)
122 cd05585 STKc_YPK1_like Catalyt 94.6 0.036 7.8E-07 59.1 4.6 46 22-70 98-143 (312)
123 cd05592 STKc_nPKC_theta_delta 94.6 0.034 7.3E-07 59.6 4.2 46 22-70 101-146 (316)
124 cd05622 STKc_ROCK1 Catalytic d 94.6 0.04 8.8E-07 60.5 4.9 48 22-72 147-194 (371)
125 cd05599 STKc_NDR_like Catalyti 94.6 0.036 7.8E-07 60.5 4.5 49 22-73 106-154 (364)
126 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 94.6 0.041 8.9E-07 57.5 4.8 48 22-72 113-160 (284)
127 cd07872 STKc_PCTAIRE2 Catalyti 94.5 0.035 7.6E-07 59.0 4.2 47 22-71 109-155 (309)
128 cd05621 STKc_ROCK2 Catalytic d 94.5 0.039 8.4E-07 60.7 4.5 48 22-72 147-194 (370)
129 cd05039 PTKc_Csk_like Catalyti 94.4 0.053 1.1E-06 55.7 5.2 51 20-73 105-155 (256)
130 cd05597 STKc_DMPK_like Catalyt 94.4 0.047 1E-06 58.9 5.0 39 32-72 116-154 (331)
131 KOG0658 Glycogen synthase kina 94.4 0.033 7.1E-07 59.0 3.5 48 27-75 127-181 (364)
132 cd05587 STKc_cPKC Catalytic do 94.4 0.044 9.4E-07 58.9 4.6 45 22-69 106-150 (324)
133 cd05041 PTKc_Fes_like Catalyti 94.4 0.06 1.3E-06 55.0 5.4 47 22-71 98-144 (251)
134 cd07869 STKc_PFTAIRE1 Catalyti 94.4 0.044 9.6E-07 58.1 4.5 47 22-71 108-154 (303)
135 cd08219 STKc_Nek3 Catalytic do 94.4 0.047 1E-06 56.0 4.6 49 22-73 105-153 (255)
136 TIGR00938 thrB_alt homoserine 94.4 0.029 6.3E-07 59.9 3.1 35 36-72 186-220 (307)
137 cd06640 STKc_MST4 Catalytic do 94.4 0.058 1.3E-06 56.3 5.3 40 32-73 115-154 (277)
138 cd05594 STKc_PKB_alpha Catalyt 94.3 0.057 1.2E-06 58.0 5.3 35 33-69 110-145 (325)
139 PTZ00267 NIMA-related protein 94.3 0.047 1E-06 62.2 4.9 49 22-73 174-222 (478)
140 cd06644 STKc_STK10_LOK Catalyt 94.3 0.056 1.2E-06 56.8 5.2 47 21-70 114-160 (292)
141 cd05580 STKc_PKA Catalytic dom 94.3 0.052 1.1E-06 57.1 4.9 49 22-73 106-154 (290)
142 cd06635 STKc_TAO1 Catalytic do 94.3 0.075 1.6E-06 56.8 6.2 48 22-72 130-177 (317)
143 cd05113 PTKc_Btk_Bmx Catalytic 94.3 0.059 1.3E-06 55.5 5.2 49 20-71 103-151 (256)
144 cd06649 PKc_MEK2 Catalytic dom 94.3 0.049 1.1E-06 58.7 4.8 34 37-72 123-156 (331)
145 KOG0198 MEKK and related serin 94.3 0.039 8.4E-07 58.7 3.8 50 22-72 114-170 (313)
146 cd05626 STKc_LATS2 Catalytic d 94.3 0.047 1E-06 60.1 4.7 41 31-73 114-154 (381)
147 cd05109 PTKc_HER2 Catalytic do 94.3 0.056 1.2E-06 56.4 5.0 48 22-72 114-161 (279)
148 cd05586 STKc_Sck1_like Catalyt 94.3 0.047 1E-06 58.7 4.5 46 22-70 101-146 (330)
149 cd05062 PTKc_IGF-1R Catalytic 94.3 0.057 1.2E-06 56.3 5.0 47 22-71 124-170 (277)
150 cd05069 PTKc_Yes Catalytic dom 94.3 0.056 1.2E-06 55.7 4.9 50 20-72 105-154 (260)
151 cd05063 PTKc_EphR_A2 Catalytic 94.2 0.06 1.3E-06 55.7 5.1 50 21-73 111-160 (268)
152 smart00219 TyrKc Tyrosine kina 94.2 0.055 1.2E-06 55.3 4.7 49 22-73 108-156 (258)
153 cd07834 STKc_MAPK Catalytic do 94.2 0.044 9.5E-07 58.8 4.1 51 21-74 107-157 (330)
154 cd05588 STKc_aPKC Catalytic do 94.2 0.043 9.4E-07 59.1 4.1 45 22-69 101-145 (329)
155 cd05617 STKc_aPKC_zeta Catalyt 94.2 0.048 1E-06 58.7 4.3 46 21-69 100-145 (327)
156 cd00192 PTKc Catalytic domain 94.2 0.065 1.4E-06 54.7 5.2 52 20-74 108-159 (262)
157 cd05068 PTKc_Frk_like Catalyti 94.2 0.058 1.3E-06 55.6 4.8 49 21-72 107-155 (261)
158 PF13354 Beta-lactamase2: Beta 94.2 0.11 2.4E-06 51.5 6.6 32 278-313 10-41 (197)
159 cd08529 STKc_FA2-like Catalyti 94.2 0.08 1.7E-06 54.1 5.8 48 22-72 106-153 (256)
160 cd05589 STKc_PKN Catalytic dom 94.1 0.047 1E-06 58.6 4.2 46 22-70 106-151 (324)
161 cd05616 STKc_cPKC_beta Catalyt 94.1 0.048 1E-06 58.5 4.3 46 22-70 106-151 (323)
162 cd06648 STKc_PAK_II Catalytic 94.1 0.053 1.2E-06 56.9 4.5 49 21-72 119-167 (285)
163 cd05038 PTKc_Jak_rpt2 Catalyti 94.1 0.063 1.4E-06 55.9 5.1 49 21-72 113-161 (284)
164 cd05582 STKc_RSK_N N-terminal 94.1 0.055 1.2E-06 57.9 4.7 47 22-71 103-149 (318)
165 cd05595 STKc_PKB_beta Catalyti 94.1 0.042 9.2E-07 59.0 3.8 46 21-69 99-144 (323)
166 KOG0598 Ribosomal protein S6 k 94.1 0.041 8.8E-07 58.3 3.4 37 31-69 138-174 (357)
167 cd07876 STKc_JNK2 Catalytic do 94.1 0.063 1.4E-06 58.5 5.2 38 31-70 136-173 (359)
168 cd06628 STKc_MAPKKK_Byr2_like 94.1 0.053 1.1E-06 56.0 4.4 49 21-72 110-158 (267)
169 cd06637 STKc_TNIK Catalytic do 94.1 0.05 1.1E-06 56.3 4.2 48 22-72 116-163 (272)
170 cd06655 STKc_PAK2 Catalytic do 94.1 0.052 1.1E-06 57.4 4.3 49 22-73 120-168 (296)
171 cd07870 STKc_PFTAIRE2 Catalyti 94.1 0.067 1.5E-06 56.2 5.1 48 20-70 106-153 (291)
172 COG3173 Predicted aminoglycosi 94.1 0.034 7.4E-07 59.2 2.8 42 36-79 197-238 (321)
173 cd08215 STKc_Nek Catalytic dom 94.1 0.059 1.3E-06 54.9 4.6 49 22-73 108-156 (258)
174 cd05615 STKc_cPKC_alpha Cataly 94.1 0.057 1.2E-06 58.0 4.6 47 21-70 105-151 (323)
175 cd05070 PTKc_Fyn_Yrk Catalytic 94.0 0.062 1.3E-06 55.3 4.7 50 20-72 105-154 (260)
176 cd06656 STKc_PAK3 Catalytic do 94.0 0.046 9.9E-07 57.9 3.8 49 22-73 120-168 (297)
177 cd05042 PTKc_Aatyk Catalytic d 94.0 0.056 1.2E-06 56.0 4.3 48 21-71 104-151 (269)
178 cd07847 STKc_CDKL1_4 Catalytic 94.0 0.065 1.4E-06 55.9 4.8 50 21-73 104-153 (286)
179 cd05613 STKc_MSK1_N N-terminal 94.0 0.055 1.2E-06 56.8 4.2 41 31-73 118-158 (290)
180 cd07863 STKc_CDK4 Catalytic do 94.0 0.058 1.3E-06 56.4 4.4 46 23-71 114-159 (288)
181 cd06639 STKc_myosinIIIB Cataly 94.0 0.067 1.4E-06 56.2 4.9 48 22-72 133-180 (291)
182 PLN03225 Serine/threonine-prot 94.0 0.059 1.3E-06 62.7 4.8 47 22-70 260-306 (566)
183 cd07848 STKc_CDKL5 Catalytic d 94.0 0.065 1.4E-06 56.1 4.7 48 22-72 105-152 (287)
184 cd05065 PTKc_EphR_B Catalytic 93.9 0.072 1.6E-06 55.2 5.0 49 21-72 110-158 (269)
185 cd07832 STKc_CCRK Catalytic do 93.9 0.062 1.4E-06 56.0 4.5 51 20-73 102-152 (286)
186 cd05099 PTKc_FGFR4 Catalytic d 93.9 0.065 1.4E-06 57.1 4.7 48 22-72 139-186 (314)
187 PHA03211 serine/threonine kina 93.9 0.057 1.2E-06 61.2 4.4 48 21-71 264-311 (461)
188 cd05034 PTKc_Src_like Catalyti 93.9 0.074 1.6E-06 54.7 5.0 50 20-72 106-155 (261)
189 cd08224 STKc_Nek6_Nek7 Catalyt 93.9 0.07 1.5E-06 54.9 4.8 48 22-72 111-158 (267)
190 cd07880 STKc_p38gamma_MAPK12 C 93.9 0.066 1.4E-06 58.0 4.8 49 21-72 122-170 (343)
191 cd05596 STKc_ROCK Catalytic do 93.9 0.064 1.4E-06 58.9 4.7 47 23-72 148-194 (370)
192 cd07879 STKc_p38delta_MAPK13 C 93.9 0.11 2.3E-06 56.3 6.4 47 23-72 123-169 (342)
193 cd05116 PTKc_Syk Catalytic dom 93.9 0.071 1.5E-06 54.8 4.8 51 20-73 98-148 (257)
194 cd06613 STKc_MAP4K3_like Catal 93.9 0.09 2E-06 53.9 5.6 48 22-72 106-153 (262)
195 PRK06148 hypothetical protein; 93.8 0.14 3E-06 63.7 7.9 53 19-71 179-238 (1013)
196 cd05157 ETNK_euk Ethanolamine 93.8 0.043 9.3E-07 55.9 3.0 35 37-72 170-204 (235)
197 cd05612 STKc_PRKX_like Catalyt 93.8 0.064 1.4E-06 56.5 4.4 48 22-72 106-153 (291)
198 cd05574 STKc_phototropin_like 93.8 0.076 1.7E-06 56.5 5.0 48 22-72 108-155 (316)
199 cd06659 STKc_PAK6 Catalytic do 93.8 0.056 1.2E-06 57.2 3.9 50 20-72 120-169 (297)
200 cd05082 PTKc_Csk Catalytic dom 93.8 0.074 1.6E-06 54.6 4.8 48 21-71 106-153 (256)
201 cd05108 PTKc_EGFR Catalytic do 93.8 0.084 1.8E-06 56.3 5.3 48 22-72 114-161 (316)
202 cd07875 STKc_JNK1 Catalytic do 93.8 0.071 1.5E-06 58.3 4.8 47 22-71 131-177 (364)
203 smart00587 CHK ZnF_C4 abd HLH 93.8 0.054 1.2E-06 53.8 3.5 39 36-74 119-160 (196)
204 cd05075 PTKc_Axl Catalytic dom 93.8 0.068 1.5E-06 55.4 4.4 39 32-72 126-164 (272)
205 cd05629 STKc_NDR_like_fungal C 93.8 0.072 1.6E-06 58.5 4.9 47 23-72 107-153 (377)
206 cd05101 PTKc_FGFR2 Catalytic d 93.8 0.078 1.7E-06 56.1 5.0 50 21-73 141-190 (304)
207 cd05033 PTKc_EphR Catalytic do 93.8 0.088 1.9E-06 54.4 5.2 46 23-71 112-157 (266)
208 TIGR02721 ycfN_thiK thiamine k 93.8 0.042 9.1E-07 57.0 2.8 35 37-74 146-180 (256)
209 cd06642 STKc_STK25-YSK1 Cataly 93.7 0.087 1.9E-06 54.9 5.1 49 22-73 106-154 (277)
210 TIGR02906 spore_CotS spore coa 93.7 0.13 2.9E-06 54.7 6.7 37 37-76 187-224 (313)
211 cd05607 STKc_GRK7 Catalytic do 93.7 0.086 1.9E-06 55.1 5.1 48 22-72 100-147 (277)
212 cd05633 STKc_GRK3 Catalytic do 93.7 0.075 1.6E-06 55.6 4.6 47 22-71 102-148 (279)
213 cd05625 STKc_LATS1 Catalytic d 93.7 0.054 1.2E-06 59.6 3.7 38 31-70 114-151 (382)
214 cd05156 ChoK_euk Choline Kinas 93.7 0.086 1.9E-06 56.0 5.1 40 35-74 177-218 (302)
215 cd06606 STKc_MAPKKK Catalytic 93.7 0.07 1.5E-06 54.3 4.3 53 20-75 104-156 (260)
216 cd07835 STKc_CDK1_like Catalyt 93.7 0.082 1.8E-06 55.1 4.9 49 21-72 103-151 (283)
217 cd07830 STKc_MAK_like Catalyti 93.7 0.099 2.1E-06 54.5 5.5 48 22-72 104-151 (283)
218 cd08217 STKc_Nek2 Catalytic do 93.6 0.069 1.5E-06 54.7 4.2 49 22-73 110-163 (265)
219 cd07840 STKc_CDK9_like Catalyt 93.6 0.07 1.5E-06 55.5 4.2 51 21-74 104-154 (287)
220 cd08528 STKc_Nek10 Catalytic d 93.6 0.081 1.8E-06 54.7 4.6 35 37-73 133-167 (269)
221 cd06607 STKc_TAO Catalytic dom 93.5 0.11 2.5E-06 55.0 5.8 48 22-72 120-167 (307)
222 PF02958 EcKinase: Ecdysteroid 93.5 0.13 2.9E-06 54.4 6.2 34 39-72 217-253 (294)
223 PTZ00036 glycogen synthase kin 93.5 0.08 1.7E-06 59.7 4.8 48 22-71 175-222 (440)
224 cd06623 PKc_MAPKK_plant_like C 93.5 0.066 1.4E-06 55.0 3.8 52 20-74 102-154 (264)
225 PRK06149 hypothetical protein; 93.5 0.079 1.7E-06 65.6 5.1 35 35-69 206-243 (972)
226 cd05059 PTKc_Tec_like Catalyti 93.5 0.089 1.9E-06 54.0 4.8 48 21-71 104-151 (256)
227 cd06629 STKc_MAPKKK_Bck1_like 93.5 0.1 2.2E-06 54.1 5.1 48 22-72 113-160 (272)
228 cd05579 STKc_MAST_like Catalyt 93.5 0.084 1.8E-06 54.1 4.5 47 21-70 97-143 (265)
229 cd07861 STKc_CDK1_euk Catalyti 93.5 0.069 1.5E-06 55.7 3.9 47 22-71 106-152 (285)
230 cd05623 STKc_MRCK_alpha Cataly 93.5 0.083 1.8E-06 56.9 4.6 47 22-71 107-153 (332)
231 cd06619 PKc_MKK5 Catalytic dom 93.5 0.086 1.9E-06 55.1 4.6 50 20-72 98-147 (279)
232 cd06646 STKc_MAP4K5 Catalytic 93.5 0.084 1.8E-06 54.5 4.5 50 20-72 109-158 (267)
233 cd06608 STKc_myosinIII_like Ca 93.5 0.089 1.9E-06 54.3 4.7 49 22-73 118-166 (275)
234 smart00221 STYKc Protein kinas 93.5 0.084 1.8E-06 52.5 4.3 51 21-74 102-152 (225)
235 cd06636 STKc_MAP4K4_6 Catalyti 93.4 0.086 1.9E-06 55.0 4.5 48 22-72 126-173 (282)
236 cd06614 STKc_PAK Catalytic dom 93.4 0.1 2.2E-06 54.7 5.0 49 22-73 121-169 (286)
237 PHA03209 serine/threonine kina 93.4 0.082 1.8E-06 57.7 4.5 46 21-69 161-206 (357)
238 cd05112 PTKc_Itk Catalytic dom 93.4 0.095 2.1E-06 53.7 4.7 48 22-72 105-152 (256)
239 cd07850 STKc_JNK Catalytic dom 93.4 0.081 1.7E-06 57.5 4.3 47 23-72 124-170 (353)
240 TIGR01767 MTRK 5-methylthiorib 93.4 0.087 1.9E-06 57.0 4.4 52 36-90 191-244 (370)
241 cd05057 PTKc_EGFR_like Catalyt 93.3 0.11 2.5E-06 54.1 5.2 48 22-72 114-161 (279)
242 cd05054 PTKc_VEGFR Catalytic d 93.3 0.16 3.5E-06 54.9 6.6 49 21-72 177-225 (337)
243 cd08223 STKc_Nek4 Catalytic do 93.3 0.11 2.5E-06 53.0 5.2 48 21-71 106-153 (257)
244 cd05098 PTKc_FGFR1 Catalytic d 93.3 0.092 2E-06 55.7 4.6 48 22-72 145-192 (307)
245 cd06650 PKc_MEK1 Catalytic dom 93.3 0.098 2.1E-06 56.4 4.8 34 37-72 123-156 (333)
246 cd05610 STKc_MASTL Catalytic d 93.3 0.089 1.9E-06 62.6 4.8 48 21-71 108-155 (669)
247 cd05608 STKc_GRK1 Catalytic do 93.3 0.1 2.2E-06 54.6 4.8 48 22-72 102-149 (280)
248 cd07839 STKc_CDK5 Catalytic do 93.2 0.087 1.9E-06 55.0 4.2 47 22-71 104-150 (284)
249 cd05097 PTKc_DDR_like Catalyti 93.2 0.11 2.3E-06 54.8 4.9 48 21-71 133-180 (295)
250 cd05035 PTKc_Axl_like Catalyti 93.2 0.098 2.1E-06 54.0 4.6 48 22-72 118-165 (273)
251 cd07859 STKc_TDY_MAPK_plant Ca 93.2 0.084 1.8E-06 56.7 4.1 46 22-70 108-153 (338)
252 cd07853 STKc_NLK Catalytic dom 93.2 0.096 2.1E-06 57.4 4.6 46 22-70 108-153 (372)
253 cd05632 STKc_GRK5 Catalytic do 93.2 0.1 2.2E-06 54.8 4.6 48 22-72 107-154 (285)
254 cd06643 STKc_SLK Catalytic dom 93.2 0.14 3E-06 53.4 5.7 48 22-72 108-155 (282)
255 cd05572 STKc_cGK_PKG Catalytic 93.2 0.1 2.3E-06 53.6 4.6 50 22-74 98-147 (262)
256 cd06631 STKc_YSK4 Catalytic do 93.2 0.086 1.9E-06 54.4 4.0 47 22-71 107-153 (265)
257 KOG0667 Dual-specificity tyros 93.1 0.077 1.7E-06 60.1 3.7 80 34-121 305-384 (586)
258 cd07857 STKc_MPK1 Catalytic do 93.1 0.093 2E-06 56.5 4.3 48 22-72 110-157 (332)
259 cd05048 PTKc_Ror Catalytic Dom 93.1 0.1 2.2E-06 54.5 4.4 48 21-71 128-175 (283)
260 cd05090 PTKc_Ror1 Catalytic do 93.1 0.1 2.2E-06 54.5 4.5 48 22-72 129-176 (283)
261 cd05073 PTKc_Hck Catalytic dom 93.1 0.12 2.7E-06 53.1 5.0 49 21-72 106-154 (260)
262 cd08530 STKc_CNK2-like Catalyt 93.1 0.12 2.6E-06 52.7 4.8 50 21-73 107-156 (256)
263 cd05045 PTKc_RET Catalytic dom 93.1 0.093 2E-06 55.1 4.1 48 21-71 131-178 (290)
264 cd07838 STKc_CDK4_6_like Catal 93.0 0.13 2.9E-06 53.5 5.3 51 20-73 110-160 (287)
265 cd05110 PTKc_HER4 Catalytic do 93.0 0.12 2.6E-06 54.8 4.9 49 21-72 113-161 (303)
266 smart00220 S_TKc Serine/Threon 93.0 0.097 2.1E-06 52.5 4.0 50 22-74 92-141 (244)
267 cd07873 STKc_PCTAIRE1 Catalyti 93.0 0.092 2E-06 55.5 4.0 46 23-71 110-155 (301)
268 PRK10593 hypothetical protein; 93.0 0.081 1.8E-06 56.3 3.5 37 37-74 193-230 (297)
269 cd07877 STKc_p38alpha_MAPK14 C 93.0 0.11 2.4E-06 56.3 4.8 48 21-71 124-171 (345)
270 cd05080 PTKc_Tyk2_rpt2 Catalyt 93.0 0.15 3.2E-06 53.3 5.5 48 22-72 112-159 (283)
271 KOG0600 Cdc2-related protein k 93.0 0.056 1.2E-06 59.5 2.2 51 27-79 220-277 (560)
272 cd05067 PTKc_Lck_Blk Catalytic 93.0 0.11 2.4E-06 53.5 4.4 47 22-71 107-153 (260)
273 cd05053 PTKc_FGFR Catalytic do 93.0 0.12 2.6E-06 54.2 4.9 49 21-72 136-184 (293)
274 PLN03224 probable serine/threo 93.0 0.14 3E-06 58.5 5.6 38 32-71 323-360 (507)
275 cd05111 PTK_HER3 Pseudokinase 92.9 0.14 3E-06 53.5 5.3 49 22-73 114-162 (279)
276 cd08229 STKc_Nek7 Catalytic do 92.9 0.11 2.4E-06 53.6 4.3 48 22-72 111-158 (267)
277 cd05619 STKc_nPKC_theta Cataly 92.9 0.1 2.2E-06 55.9 4.2 46 21-69 100-145 (316)
278 cd06652 STKc_MEKK2 Catalytic d 92.9 0.1 2.2E-06 53.9 4.1 48 21-71 110-157 (265)
279 cd05095 PTKc_DDR2 Catalytic do 92.9 0.12 2.7E-06 54.4 4.8 49 20-71 133-181 (296)
280 cd07829 STKc_CDK_like Catalyti 92.9 0.17 3.8E-06 52.4 5.8 51 20-73 101-151 (282)
281 cd08228 STKc_Nek6 Catalytic do 92.8 0.11 2.5E-06 53.5 4.3 50 21-73 110-159 (267)
282 cd05037 PTK_Jak_rpt1 Pseudokin 92.8 0.15 3.3E-06 52.1 5.3 50 22-72 106-160 (259)
283 KOG0659 Cdk activating kinase 92.8 0.083 1.8E-06 53.8 3.1 53 24-78 100-159 (318)
284 cd05050 PTKc_Musk Catalytic do 92.8 0.11 2.5E-06 54.3 4.3 47 21-70 134-180 (288)
285 cd05052 PTKc_Abl Catalytic dom 92.8 0.14 3E-06 52.8 4.9 49 21-72 108-156 (263)
286 cd05631 STKc_GRK4 Catalytic do 92.8 0.13 2.8E-06 54.0 4.7 47 23-72 108-154 (285)
287 cd07851 STKc_p38 Catalytic dom 92.8 0.12 2.5E-06 56.1 4.4 51 20-73 121-171 (343)
288 cd06626 STKc_MEKK4 Catalytic d 92.7 0.099 2.1E-06 53.7 3.7 51 21-74 103-153 (264)
289 PTZ00283 serine/threonine prot 92.7 0.13 2.8E-06 58.9 4.9 38 32-71 157-194 (496)
290 cd06624 STKc_ASK Catalytic dom 92.7 0.15 3.3E-06 52.7 5.1 47 23-71 114-160 (268)
291 cd05114 PTKc_Tec_Rlk Catalytic 92.7 0.16 3.5E-06 52.1 5.2 50 20-72 103-152 (256)
292 KOG1163 Casein kinase (serine/ 92.7 0.091 2E-06 52.7 3.1 40 32-71 125-165 (341)
293 cd05123 STKc_AGC Catalytic dom 92.7 0.17 3.8E-06 51.4 5.4 48 23-73 99-146 (250)
294 cd05058 PTKc_Met_Ron Catalytic 92.7 0.16 3.4E-06 52.2 5.1 48 22-72 103-150 (262)
295 cd05118 STKc_CMGC Catalytic do 92.7 0.12 2.5E-06 53.8 4.2 52 20-74 101-152 (283)
296 cd07860 STKc_CDK2_3 Catalytic 92.7 0.13 2.8E-06 53.7 4.5 47 22-71 105-151 (284)
297 cd06609 STKc_MST3_like Catalyt 92.6 0.12 2.7E-06 53.6 4.2 51 20-73 101-151 (274)
298 cd06641 STKc_MST3 Catalytic do 92.6 0.12 2.7E-06 53.8 4.3 48 23-73 107-154 (277)
299 cd07837 STKc_CdkB_plant Cataly 92.6 0.16 3.5E-06 53.2 5.2 48 22-71 115-162 (295)
300 cd05104 PTKc_Kit Catalytic dom 92.6 0.18 3.9E-06 55.4 5.7 49 21-72 218-266 (375)
301 cd06618 PKc_MKK7 Catalytic dom 92.6 0.13 2.8E-06 54.2 4.4 48 22-72 119-167 (296)
302 cd06653 STKc_MEKK3_like_1 Cata 92.5 0.12 2.6E-06 53.3 4.0 48 21-71 110-157 (264)
303 cd07836 STKc_Pho85 Catalytic d 92.5 0.13 2.8E-06 53.6 4.3 47 22-71 105-151 (284)
304 cd07866 STKc_BUR1 Catalytic do 92.5 0.12 2.6E-06 54.6 4.0 48 22-72 120-167 (311)
305 PLN00009 cyclin-dependent kina 92.5 0.19 4E-06 52.9 5.4 48 22-71 107-154 (294)
306 cd07833 STKc_CDKL Catalytic do 92.5 0.15 3.4E-06 53.1 4.8 50 22-74 105-154 (288)
307 PRK13184 pknD serine/threonine 92.4 0.16 3.5E-06 61.5 5.4 46 22-70 118-163 (932)
308 cd05072 PTKc_Lyn Catalytic dom 92.4 0.15 3.3E-06 52.4 4.6 48 22-72 108-155 (261)
309 cd05061 PTKc_InsR Catalytic do 92.4 0.16 3.4E-06 53.4 4.8 48 21-71 123-170 (288)
310 cd06658 STKc_PAK5 Catalytic do 92.4 0.11 2.5E-06 54.7 3.8 49 21-72 122-170 (292)
311 cd05578 STKc_Yank1 Catalytic d 92.4 0.16 3.4E-06 52.2 4.7 48 23-73 106-153 (258)
312 cd07846 STKc_CDKL2_3 Catalytic 92.4 0.17 3.6E-06 52.8 4.9 49 22-73 105-153 (286)
313 cd05056 PTKc_FAK Catalytic dom 92.4 0.16 3.4E-06 52.7 4.7 49 22-73 112-160 (270)
314 cd06610 STKc_OSR1_SPAK Catalyt 92.4 0.12 2.7E-06 53.0 3.9 49 22-73 107-155 (267)
315 cd07867 STKc_CDC2L6 Catalytic 92.4 0.14 3.1E-06 54.4 4.4 50 22-72 113-164 (317)
316 cd05103 PTKc_VEGFR2 Catalytic 92.4 0.2 4.4E-06 54.2 5.7 47 22-71 184-230 (343)
317 cd07841 STKc_CDK7 Catalytic do 92.4 0.16 3.5E-06 53.4 4.8 50 20-72 105-154 (298)
318 cd05088 PTKc_Tie2 Catalytic do 92.3 0.18 3.8E-06 53.5 5.1 47 20-69 127-173 (303)
319 cd05605 STKc_GRK4_like Catalyt 92.3 0.16 3.5E-06 53.2 4.7 47 22-71 107-153 (285)
320 cd05630 STKc_GRK6 Catalytic do 92.3 0.15 3.4E-06 53.4 4.5 47 22-71 107-153 (285)
321 cd06917 STKc_NAK1_like Catalyt 92.3 0.12 2.5E-06 53.8 3.5 50 22-74 106-155 (277)
322 cd07868 STKc_CDK8 Catalytic do 92.3 0.14 3.1E-06 54.5 4.3 49 22-71 113-163 (317)
323 cd07845 STKc_CDK10 Catalytic d 92.3 0.13 2.8E-06 54.6 4.0 48 22-72 113-160 (309)
324 cd05606 STKc_beta_ARK Catalyti 92.2 0.15 3.2E-06 53.3 4.3 50 20-72 100-149 (278)
325 cd05044 PTKc_c-ros Catalytic d 92.2 0.18 3.9E-06 52.0 4.9 50 22-72 111-163 (269)
326 cd05060 PTKc_Syk_like Catalyti 92.2 0.19 4.2E-06 51.5 5.1 50 20-72 98-147 (257)
327 cd05570 STKc_PKC Catalytic dom 92.2 0.14 3E-06 54.8 4.1 46 21-69 100-145 (318)
328 cd06617 PKc_MKK3_6 Catalytic d 92.1 0.17 3.6E-06 52.7 4.6 36 35-72 120-156 (283)
329 cd05094 PTKc_TrkC Catalytic do 92.1 0.19 4.1E-06 52.8 4.9 49 20-71 126-174 (291)
330 cd06645 STKc_MAP4K3 Catalytic 92.1 0.15 3.2E-06 52.7 4.0 48 22-72 111-158 (267)
331 cd06632 STKc_MEKK1_plant Catal 92.1 0.18 4E-06 51.4 4.7 49 22-73 107-155 (258)
332 cd05089 PTKc_Tie1 Catalytic do 92.1 0.21 4.5E-06 52.7 5.2 45 22-69 124-168 (297)
333 PHA03390 pk1 serine/threonine- 92.0 0.2 4.4E-06 52.0 5.0 49 22-72 114-162 (267)
334 cd05049 PTKc_Trk Catalytic dom 92.0 0.18 4E-06 52.3 4.7 47 21-70 126-172 (280)
335 cd06615 PKc_MEK Catalytic doma 92.0 0.19 4E-06 53.5 4.8 33 37-71 119-151 (308)
336 PTZ00024 cyclin-dependent prot 92.0 0.14 3.1E-06 55.1 3.9 47 22-71 124-170 (335)
337 cd05576 STKc_RPK118_like Catal 92.0 0.16 3.5E-06 51.6 4.2 48 21-71 89-136 (237)
338 cd08221 STKc_Nek9 Catalytic do 92.0 0.17 3.8E-06 51.7 4.4 51 21-74 105-155 (256)
339 cd05087 PTKc_Aatyk1_Aatyk3 Cat 91.9 0.2 4.2E-06 51.9 4.8 47 21-70 104-150 (269)
340 cd06622 PKc_MAPKK_PBS2_like Ca 91.9 0.18 3.9E-06 52.7 4.5 34 37-72 122-155 (286)
341 PRK09550 mtnK methylthioribose 91.9 0.27 5.9E-06 54.3 6.0 52 36-90 222-275 (401)
342 cd06638 STKc_myosinIIIA Cataly 91.9 0.2 4.2E-06 52.3 4.8 48 22-72 129-176 (286)
343 cd07856 STKc_Sty1_Hog1 Catalyt 91.9 0.19 4.1E-06 54.1 4.7 48 22-72 113-160 (328)
344 cd05100 PTKc_FGFR3 Catalytic d 91.9 0.19 4.2E-06 54.1 4.8 48 22-72 139-186 (334)
345 cd05051 PTKc_DDR Catalytic dom 91.9 0.21 4.5E-06 52.5 4.9 47 22-71 135-181 (296)
346 cd07849 STKc_ERK1_2_like Catal 91.8 0.15 3.2E-06 55.0 3.8 48 22-72 111-158 (336)
347 KOG0583 Serine/threonine prote 91.8 0.12 2.6E-06 56.7 3.0 48 23-71 118-172 (370)
348 KOG0662 Cyclin-dependent kinas 91.8 0.16 3.5E-06 48.6 3.4 48 24-73 100-154 (292)
349 cd05577 STKc_GRK Catalytic dom 91.7 0.15 3.2E-06 53.1 3.6 47 22-71 100-146 (277)
350 cd05092 PTKc_TrkA Catalytic do 91.7 0.19 4.1E-06 52.4 4.4 47 22-71 127-173 (280)
351 cd07843 STKc_CDC2L1 Catalytic 91.7 0.21 4.5E-06 52.4 4.7 49 22-73 111-159 (293)
352 cd08220 STKc_Nek8 Catalytic do 91.7 0.18 4E-06 51.4 4.2 50 22-73 106-155 (256)
353 cd06621 PKc_MAPKK_Pek1_like Ca 91.6 0.23 5.1E-06 52.0 5.0 48 22-72 110-157 (287)
354 cd07865 STKc_CDK9 Catalytic do 91.6 0.18 3.9E-06 53.3 4.1 50 21-73 123-172 (310)
355 KOG0668 Casein kinase II, alph 91.6 0.17 3.8E-06 50.4 3.5 43 27-70 134-183 (338)
356 cd05148 PTKc_Srm_Brk Catalytic 91.6 0.22 4.7E-06 51.2 4.6 50 20-72 107-156 (261)
357 KOG0581 Mitogen-activated prot 91.6 0.16 3.6E-06 53.9 3.6 68 2-73 161-232 (364)
358 cd05055 PTKc_PDGFR Catalytic d 91.6 0.21 4.6E-06 52.9 4.6 49 21-72 145-193 (302)
359 cd05611 STKc_Rim15_like Cataly 91.5 0.22 4.8E-06 51.1 4.6 49 20-71 100-148 (260)
360 KOG2268 Serine/threonine prote 91.5 0.16 3.5E-06 53.5 3.4 88 1-102 190-278 (465)
361 cd07864 STKc_CDK12 Catalytic d 91.5 0.19 4.1E-06 53.0 4.1 49 22-73 121-169 (302)
362 cd06654 STKc_PAK1 Catalytic do 91.4 0.16 3.4E-06 53.7 3.4 50 21-73 120-169 (296)
363 PLN02236 choline kinase 91.4 0.17 3.7E-06 55.0 3.7 38 36-74 199-236 (344)
364 cd05106 PTKc_CSF-1R Catalytic 91.4 0.24 5.1E-06 54.5 4.9 49 21-72 216-264 (374)
365 cd06616 PKc_MKK4 Catalytic dom 91.4 0.17 3.8E-06 52.9 3.7 32 37-70 127-158 (288)
366 cd06647 STKc_PAK_I Catalytic d 91.3 0.19 4E-06 53.0 3.9 50 21-73 119-168 (293)
367 cd05093 PTKc_TrkB Catalytic do 91.2 0.29 6.3E-06 51.3 5.2 48 21-71 124-171 (288)
368 KOG0599 Phosphorylase kinase g 91.2 0.24 5.3E-06 50.5 4.2 53 20-75 126-178 (411)
369 cd07852 STKc_MAPK15 Catalytic 91.2 0.26 5.7E-06 53.0 4.9 50 21-73 111-160 (337)
370 cd05032 PTKc_InsR_like Catalyt 91.2 0.24 5.1E-06 51.4 4.4 48 22-72 124-171 (277)
371 KOG0574 STE20-like serine/thre 91.0 0.15 3.2E-06 52.6 2.5 70 5-76 114-185 (502)
372 cd06611 STKc_SLK_like Catalyti 91.0 0.32 7E-06 50.6 5.2 47 22-71 108-154 (280)
373 PLN02756 S-methyl-5-thioribose 91.0 0.25 5.3E-06 54.5 4.4 51 36-89 229-281 (418)
374 cd05036 PTKc_ALK_LTK Catalytic 91.0 0.31 6.8E-06 50.7 5.1 49 22-71 121-170 (277)
375 cd06630 STKc_MEKK1 Catalytic d 90.7 0.26 5.7E-06 50.7 4.2 49 22-72 108-156 (268)
376 COG1718 RIO1 Serine/threonine 90.6 0.61 1.3E-05 47.6 6.4 76 18-103 167-242 (268)
377 cd05047 PTKc_Tie Catalytic dom 90.6 0.38 8.2E-06 49.8 5.3 46 21-69 116-161 (270)
378 cd05105 PTKc_PDGFR_alpha Catal 90.6 0.33 7.2E-06 53.9 5.1 49 21-72 241-289 (400)
379 KOG1006 Mitogen-activated prot 90.5 0.14 3.1E-06 52.1 1.9 36 36-73 186-221 (361)
380 cd06620 PKc_MAPKK_Byr1_like Ca 90.5 0.28 6E-06 51.3 4.3 34 37-72 123-156 (284)
381 cd07858 STKc_TEY_MAPK_plant Ca 90.5 0.27 5.9E-06 53.0 4.2 50 20-72 111-160 (337)
382 TIGR03843 conserved hypothetic 90.4 0.5 1.1E-05 47.6 5.5 43 33-77 139-181 (253)
383 KOG3087 Serine/threonine prote 90.4 0.47 1E-05 46.2 5.1 45 21-67 117-163 (229)
384 cd07854 STKc_MAPK4_6 Catalytic 90.4 0.25 5.5E-06 53.4 3.9 48 23-72 120-167 (342)
385 cd05086 PTKc_Aatyk2 Catalytic 90.3 0.4 8.6E-06 49.7 5.1 46 21-69 103-148 (268)
386 cd05064 PTKc_EphR_A10 Catalyti 90.2 0.36 7.8E-06 49.9 4.7 48 20-70 110-157 (266)
387 cd06633 STKc_TAO3 Catalytic do 90.2 0.44 9.6E-06 50.7 5.5 46 22-70 126-171 (313)
388 cd08218 STKc_Nek1 Catalytic do 90.1 0.36 7.9E-06 49.3 4.6 50 21-73 105-154 (256)
389 KOG1027 Serine/threonine prote 90.1 0.4 8.7E-06 56.0 5.2 56 17-73 606-664 (903)
390 cd06651 STKc_MEKK3 Catalytic d 90.0 0.33 7.2E-06 50.1 4.3 47 22-71 111-157 (266)
391 KOG0593 Predicted protein kina 90.0 0.2 4.2E-06 52.1 2.4 57 14-72 95-153 (396)
392 KOG1166 Mitotic checkpoint ser 89.9 0.29 6.4E-06 59.2 4.1 39 31-69 807-850 (974)
393 COG0510 ycfN Thiamine kinase a 89.8 0.21 4.6E-06 52.2 2.6 33 38-72 154-186 (269)
394 cd07831 STKc_MOK Catalytic dom 89.8 0.43 9.3E-06 49.5 5.0 46 22-71 105-150 (282)
395 cd06634 STKc_TAO2 Catalytic do 89.8 0.35 7.7E-06 51.3 4.3 39 32-72 129-167 (308)
396 cd05043 PTK_Ryk Pseudokinase d 89.7 0.37 7.9E-06 50.2 4.3 48 22-72 122-169 (280)
397 cd07844 STKc_PCTAIRE_like Cata 89.7 0.35 7.7E-06 50.6 4.2 37 32-70 117-153 (291)
398 KOG1165 Casein kinase (serine/ 89.7 0.58 1.3E-05 49.3 5.5 52 19-70 123-179 (449)
399 KOG0582 Ste20-like serine/thre 89.6 0.52 1.1E-05 51.5 5.3 56 15-72 121-178 (516)
400 cd05074 PTKc_Tyro3 Catalytic d 89.6 0.45 9.8E-06 49.2 4.9 49 20-71 116-164 (273)
401 KOG0578 p21-activated serine/t 89.6 0.45 9.8E-06 53.3 5.0 70 1-75 352-424 (550)
402 KOG0612 Rho-associated, coiled 89.6 0.22 4.7E-06 60.0 2.6 65 31-101 188-252 (1317)
403 cd07855 STKc_ERK5 Catalytic do 89.5 0.35 7.6E-06 52.0 4.1 50 20-72 110-159 (334)
404 PTZ00284 protein kinase; Provi 89.1 0.42 9.1E-06 54.2 4.5 47 22-69 236-297 (467)
405 KOG0669 Cyclin T-dependent kin 89.1 0.24 5.3E-06 50.0 2.2 51 20-73 127-177 (376)
406 cd05107 PTKc_PDGFR_beta Cataly 88.7 0.57 1.2E-05 52.1 5.1 49 20-71 242-290 (401)
407 cd05077 PTK_Jak1_rpt1 Pseudoki 88.2 0.68 1.5E-05 47.8 5.1 50 20-70 108-162 (262)
408 PF01633 Choline_kinase: Choli 88.2 0.23 4.9E-06 49.8 1.4 37 36-73 142-178 (211)
409 PLN02421 phosphotransferase, a 87.9 0.39 8.4E-06 51.9 3.0 35 39-74 184-218 (330)
410 cd08216 PK_STRAD Pseudokinase 87.9 0.78 1.7E-05 48.6 5.4 47 22-71 106-152 (314)
411 PLN00181 protein SPA1-RELATED; 87.7 0.69 1.5E-05 56.3 5.4 46 22-70 85-130 (793)
412 KOG0616 cAMP-dependent protein 87.5 0.4 8.7E-06 49.7 2.7 42 31-74 157-198 (355)
413 cd07842 STKc_CDK8_like Catalyt 87.4 0.51 1.1E-05 50.0 3.6 50 22-72 113-164 (316)
414 TIGR03423 pbp2_mrdA penicillin 87.3 5.1 0.00011 47.0 12.1 31 281-314 302-332 (592)
415 smart00146 PI3Kc Phosphoinosit 86.9 0.44 9.6E-06 47.6 2.6 39 32-72 96-134 (202)
416 cd05076 PTK_Tyk2_rpt1 Pseudoki 86.2 1.1 2.5E-05 46.5 5.4 50 20-70 120-174 (274)
417 cd08227 PK_STRAD_alpha Pseudok 86.0 1 2.2E-05 48.3 4.9 46 22-70 106-151 (327)
418 TIGR02904 spore_ysxE spore coa 85.6 0.45 9.7E-06 50.9 1.9 33 35-69 194-226 (309)
419 cd05172 PIKKc_DNA-PK DNA-depen 85.4 0.57 1.2E-05 47.9 2.5 28 41-69 140-167 (235)
420 KOG0032 Ca2+/calmodulin-depend 85.4 0.82 1.8E-05 50.4 4.0 52 20-72 138-191 (382)
421 cd05046 PTK_CCK4 Pseudokinase 85.2 1.3 2.8E-05 45.9 5.2 47 21-70 121-167 (275)
422 PRK10795 penicillin-binding pr 85.2 6.4 0.00014 46.6 11.5 81 228-313 253-354 (634)
423 KOG1035 eIF-2alpha kinase GCN2 85.2 0.89 1.9E-05 55.5 4.3 37 34-72 713-749 (1351)
424 cd00892 PIKKc_ATR ATR (Ataxia 84.8 0.64 1.4E-05 47.6 2.6 29 41-70 143-171 (237)
425 cd05171 PIKKc_ATM Ataxia telan 84.5 0.65 1.4E-05 48.9 2.5 26 41-67 185-210 (279)
426 KOG0591 NIMA (never in mitosis 84.5 1.6 3.4E-05 45.2 5.0 36 39-76 149-184 (375)
427 cd00142 PI3Kc_like Phosphoinos 84.3 0.68 1.5E-05 46.9 2.5 29 40-69 131-159 (219)
428 KOG4645 MAPKKK (MAP kinase kin 84.2 1 2.3E-05 55.3 4.3 39 33-73 1349-1387(1509)
429 COG3178 Predicted phosphotrans 84.2 1.1 2.3E-05 46.8 3.8 44 20-65 185-230 (351)
430 PF10707 YrbL-PhoP_reg: PhoP r 84.1 3.1 6.8E-05 41.4 7.1 48 22-69 122-172 (199)
431 PHA02988 hypothetical protein; 83.8 1.3 2.9E-05 46.3 4.6 48 22-72 127-175 (283)
432 KOG4158 BRPK/PTEN-induced prot 83.8 1.2 2.5E-05 48.2 4.0 35 34-68 357-393 (598)
433 PLN02876 acyl-CoA dehydrogenas 83.6 0.69 1.5E-05 56.5 2.6 42 37-79 225-267 (822)
434 cd00893 PI4Kc_III Phosphoinosi 83.5 0.7 1.5E-05 48.7 2.3 30 41-72 143-172 (289)
435 PF00454 PI3_PI4_kinase: Phosp 83.5 0.68 1.5E-05 47.3 2.2 34 35-69 132-165 (235)
436 KOG0665 Jun-N-terminal kinase 83.4 1.3 2.7E-05 46.6 4.0 55 17-73 115-171 (369)
437 cd05168 PI4Kc_III_beta Phospho 83.3 0.72 1.6E-05 48.6 2.3 30 41-72 145-174 (293)
438 cd05169 PIKKc_TOR TOR (Target 83.3 0.72 1.6E-05 48.6 2.3 26 41-67 185-210 (280)
439 cd08225 STKc_Nek5 Catalytic do 83.2 1.2 2.6E-05 45.3 4.0 51 20-72 104-154 (257)
440 KOG4236 Serine/threonine prote 82.9 1.3 2.8E-05 49.4 4.0 55 20-74 659-721 (888)
441 cd00891 PI3Kc Phosphoinositide 82.8 0.72 1.6E-05 50.1 2.1 26 41-68 207-232 (352)
442 PRK09902 hypothetical protein; 82.4 3.3 7.1E-05 41.6 6.4 48 21-69 132-179 (216)
443 KOG0575 Polo-like serine/threo 82.2 0.59 1.3E-05 52.8 1.1 53 19-73 112-171 (592)
444 cd05164 PIKKc Phosphoinositide 81.8 0.92 2E-05 46.0 2.3 30 39-69 133-162 (222)
445 KOG0579 Ste20-like serine/thre 81.8 2 4.4E-05 48.9 5.0 50 20-72 133-182 (1187)
446 cd05170 PIKKc_SMG1 Suppressor 81.3 1 2.3E-05 48.0 2.6 27 41-68 213-239 (307)
447 cd05167 PI4Kc_III_alpha Phosph 81.2 0.96 2.1E-05 48.1 2.2 32 39-72 162-193 (311)
448 cd00896 PI3Kc_III Phosphoinosi 81.1 18 0.00039 39.3 11.9 26 41-68 206-231 (350)
449 KOG0663 Protein kinase PITSLRE 81.1 1.8 4E-05 45.7 4.1 38 34-73 193-230 (419)
450 TIGR02214 spoVD_pbp stage V sp 80.8 5.8 0.00013 47.0 8.9 80 228-312 219-311 (636)
451 KOG0615 Serine/threonine prote 80.8 2.3 5.1E-05 46.1 4.9 38 34-71 292-330 (475)
452 cd08222 STKc_Nek11 Catalytic d 79.9 2.3 5E-05 43.4 4.6 46 21-70 110-155 (260)
453 cd05078 PTK_Jak2_Jak3_rpt1 Pse 79.3 3.1 6.8E-05 42.6 5.4 49 22-71 105-159 (258)
454 cd05173 PI3Kc_IA_beta Phosphoi 79.2 1.2 2.5E-05 48.4 2.2 26 41-68 212-237 (362)
455 cd08226 PK_STRAD_beta Pseudoki 79.0 1.8 4E-05 46.2 3.7 44 22-68 106-149 (328)
456 KOG0585 Ca2+/calmodulin-depend 79.0 1.5 3.3E-05 48.3 2.9 41 31-73 223-263 (576)
457 KOG0595 Serine/threonine-prote 78.9 3.1 6.7E-05 45.1 5.1 42 32-73 123-168 (429)
458 cd05166 PI3Kc_II Phosphoinosit 78.1 1.4 3E-05 47.8 2.3 25 41-67 206-230 (353)
459 KOG0694 Serine/threonine prote 78.0 1.9 4.2E-05 49.6 3.5 41 29-71 479-519 (694)
460 TIGR02457 TreS_Cterm trehalose 77.7 1.9 4.2E-05 49.3 3.4 31 40-73 382-414 (528)
461 KOG0610 Putative serine/threon 77.6 2.2 4.8E-05 46.3 3.6 61 7-70 162-229 (459)
462 cd05174 PI3Kc_IA_delta Phospho 76.7 1.6 3.4E-05 47.4 2.2 26 41-68 212-237 (361)
463 KOG0588 Serine/threonine prote 76.7 1.5 3.3E-05 50.2 2.2 41 36-78 130-171 (786)
464 KOG0611 Predicted serine/threo 76.5 2 4.3E-05 46.4 2.9 50 19-70 147-203 (668)
465 PF07714 Pkinase_Tyr: Protein 76.5 3.2 7E-05 42.7 4.5 48 20-70 106-153 (259)
466 cd05177 PI3Kc_C2_gamma Phospho 76.5 1.6 3.5E-05 47.2 2.3 27 41-69 207-233 (354)
467 cd05165 PI3Kc_I Phosphoinositi 76.3 1.6 3.4E-05 47.5 2.1 26 41-68 216-241 (366)
468 KOG0577 Serine/threonine prote 76.0 3.3 7.1E-05 47.0 4.4 63 31-95 139-207 (948)
469 KOG0666 Cyclin C-dependent kin 75.9 2.8 6.1E-05 43.9 3.6 49 21-69 128-185 (438)
470 PTZ00266 NIMA-related protein 75.7 3.7 8E-05 50.5 5.2 35 38-72 145-194 (1021)
471 TIGR02074 PBP_1a_fam penicilli 75.7 13 0.00027 43.1 9.4 80 227-313 229-317 (530)
472 KOG0671 LAMMER dual specificit 75.6 4.8 0.0001 43.4 5.3 78 19-105 194-289 (415)
473 TIGR02073 PBP_1c penicillin-bi 74.6 13 0.00029 44.6 9.6 109 227-340 249-374 (727)
474 PRK15105 peptidoglycan synthas 74.4 12 0.00027 43.6 9.0 84 228-314 237-330 (578)
475 cd05175 PI3Kc_IA_alpha Phospho 73.8 2 4.4E-05 46.5 2.1 27 41-69 215-241 (366)
476 cd00894 PI3Kc_IB_gamma Phospho 73.5 2.1 4.5E-05 46.5 2.1 26 41-68 216-241 (365)
477 COG0515 SPS1 Serine/threonine 73.3 3.8 8.2E-05 42.3 4.1 36 31-68 114-150 (384)
478 cd05176 PI3Kc_C2_alpha Phospho 72.9 2.3 5E-05 45.9 2.3 27 41-69 206-232 (353)
479 PTZ00303 phosphatidylinositol 72.5 2.6 5.6E-05 48.7 2.6 28 40-69 1148-1175(1374)
480 cd05163 TRRAP TRansformation/t 72.5 2.7 5.8E-05 43.6 2.6 28 39-67 156-183 (253)
481 COG3281 Ble Uncharacterized pr 71.9 2.2 4.8E-05 45.3 1.8 25 39-66 286-310 (438)
482 PRK11240 penicillin-binding pr 71.0 18 0.00039 43.7 9.5 108 228-341 276-399 (772)
483 PF12260 PIP49_C: Protein-kina 70.8 5.1 0.00011 39.5 4.1 54 17-72 59-114 (188)
484 cd00895 PI3Kc_C2_beta Phosphoi 70.4 2.8 6E-05 45.3 2.3 27 41-69 207-233 (354)
485 KOG0614 cGMP-dependent protein 69.4 3.1 6.7E-05 46.4 2.3 40 32-73 534-573 (732)
486 PF14531 Kinase-like: Kinase-l 69.3 3.4 7.5E-05 43.5 2.6 41 33-75 160-200 (288)
487 KOG1187 Serine/threonine prote 68.8 4.4 9.5E-05 44.4 3.4 52 19-72 176-229 (361)
488 PF02113 Peptidase_S13: D-Ala- 68.3 8.8 0.00019 43.2 5.8 54 235-301 2-59 (444)
489 PF03881 Fructosamin_kin: Fruc 65.9 2.5 5.4E-05 44.7 0.8 30 38-69 189-218 (288)
490 KOG0192 Tyrosine kinase specif 63.4 8.7 0.00019 42.0 4.4 58 15-74 137-198 (362)
491 KOG1152 Signal transduction se 63.3 7.4 0.00016 44.2 3.8 46 21-68 666-718 (772)
492 PTZ00384 choline kinase; Provi 63.0 5 0.00011 44.3 2.5 29 37-68 227-255 (383)
493 KOG1345 Serine/threonine kinas 62.3 12 0.00027 38.6 4.8 54 18-72 122-175 (378)
494 KOG1151 Tousled-like protein k 62.0 8.8 0.00019 42.1 4.0 39 36-74 588-627 (775)
495 KOG0597 Serine-threonine prote 60.6 9 0.0002 43.5 3.8 50 20-72 103-152 (808)
496 TIGR02071 PBP_1b penicillin-bi 60.5 30 0.00065 41.6 8.5 26 487-512 544-569 (730)
497 COG5072 ALK1 Serine/threonine 60.1 5.9 0.00013 42.9 2.2 30 36-68 340-369 (488)
498 KOG0696 Serine/threonine prote 59.7 8.2 0.00018 42.0 3.2 35 33-69 465-499 (683)
499 PRK14850 penicillin-binding pr 58.8 41 0.00088 40.6 9.2 27 486-512 553-579 (764)
500 KOG0201 Serine/threonine prote 58.1 7 0.00015 42.9 2.4 47 29-77 122-168 (467)
No 1
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=100.00 E-value=4.2e-49 Score=430.08 Aligned_cols=242 Identities=22% Similarity=0.300 Sum_probs=202.4
Q ss_pred chHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807 227 HSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL 306 (729)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l 306 (729)
..++.+.+++.+++++++..+||++++|+++|++++. +||+++.+.+.|++++|+|+|||+||+||++++++|+|+|+|
T Consensus 28 ~~~~~~~vd~~i~~~~~~~~~pG~~vaV~~~g~~~~~-~~G~~~~~~~~p~~~dT~f~iaSvTK~fTa~~i~~Lve~G~L 106 (384)
T PRK11289 28 PQQLKDIVDRTITPLMEEQDIPGMAVAVIYNGKPYYF-NYGVADKATGQPVTQDTLFELGSVSKTFTATLAGYAQARGEL 106 (384)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCEEEEE-eeeecccccCCCCCCCCEEeeeechHHHHHHHHHHHHHCCCC
Confidence 4678889999999999999999999999999998875 899999999999999999999999999999999999999999
Q ss_pred CccCchhhhccCCccCCCCCCcHHHHhcCCCC-CCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHH
Q 004807 307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSG-LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 385 (729)
Q Consensus 307 ~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSG-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~ 385 (729)
+|||||.+|||+|+...+++|||||||+|||| ++...++ ...+.+++++.+...++.++||++|.|||.+|.
T Consensus 107 ~Lddpv~~ylP~~~~~~~~~ITir~LLtHtSGg~p~~~~~-------~~~~~~~l~~~l~~~~~~~~PG~~~~YSn~~y~ 179 (384)
T PRK11289 107 SLSDPASKYLPELKGSPFDGITLLHLATYTAGGLPLQVPD-------EVKDDAQLLRYFQAWQPAYAPGTQRLYSNPSIG 179 (384)
T ss_pred CCCCcHHHhCcccCCCCcCCeEHHHHhccccCCCcccCCc-------ccCCHHHHHHHHHhCCCCCCCCCCeeechHHHH
Confidence 99999999999998766789999999999995 7753321 135678888988888999999999999999998
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhh
Q 004807 386 WLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQ 465 (729)
Q Consensus 386 ~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 465 (729)
|||.|||+++|++|++|++++||+||||++|.+. .++....+.+..|..... ... .
T Consensus 180 -lLg~iiE~vtg~~~~~~l~~~I~~PLGM~~T~~~-~~~~~~~~~a~gy~~~g~--~~~---------~----------- 235 (384)
T PRK11289 180 -LFGYLAAKAMGQPFEQLMEQRLFPPLGLTHTYIN-VPEAEMADYAQGYNKEGK--PVR---------V----------- 235 (384)
T ss_pred -HHHHHHHHHHCcCHHHHHHHhhhhhcCCCccccC-CCccccccceeeeccCCC--cee---------c-----------
Confidence 9999999999999999999999999999999663 444444555555422110 000 0
Q ss_pred hhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 466 LAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
.+.+ ...|+||++||++||+||++++++++.+++.
T Consensus 236 ----------~~~~--~~~~aGgl~ST~~Dl~~f~~all~~~~l~~~ 270 (384)
T PRK11289 236 ----------NPGV--LDAEAYGVKSTAADMLRFVQANLGPQDLDPT 270 (384)
T ss_pred ----------CCCc--ccCCceeeEECHHHHHHHHHHHcCCCCCCHH
Confidence 0000 0137999999999999999999998876443
No 2
>PRK10662 beta-lactam binding protein AmpH; Provisional
Probab=100.00 E-value=9.6e-49 Score=427.56 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=201.3
Q ss_pred CCCCchHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHH
Q 004807 223 SKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVD 302 (729)
Q Consensus 223 ~~p~~~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve 302 (729)
..|....+.+.+++.+++++++.++||++|+|+++|++++ .+||+++.+.+.|++++|+|+|||+||+|||+++++|+|
T Consensus 24 ~~~~~~~~~~~id~~~~~~~~~~~~pG~~v~V~~~g~i~~-~~~G~~~~~~~~~~t~dT~f~iaSiTK~fta~ai~~Lve 102 (378)
T PRK10662 24 PAADPLLASDIVDRYAEHIFYGSGATGMALVVIDGNQRVF-RSYGETRPGNNVRPQLDSLIRIASITKLMTSEVLVKLAD 102 (378)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEECCEEEE-EeeeeccCCCCCCCCCCCeEEeeeecHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999888 689999999999999999999999999999999999999
Q ss_pred CCCCCccCchhhhccCCcc---CCCCCCcHHHHhcCCCCCCCCccCcccCCCcC-CCCHHHHHHHHHhcCCCCCCCCcee
Q 004807 303 NGKLKLEENIANIWPEFKS---NGKDLIKVHHVLNHTSGLHNVSVDLSSENPLL-ICDWDECLNRIALSAPETEPGQEQL 378 (729)
Q Consensus 303 ~G~l~ldd~v~~ylP~~~~---~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~PG~~~~ 378 (729)
+|+|+|||||.+|+|++.. ...+.|||||||+||||++++........+.. ..+.++.++.+...++.++||++|.
T Consensus 103 ~G~l~lddpv~~ylP~~~~~~~~~~~~ITir~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PGt~~~ 182 (378)
T PRK10662 103 DGTVKLTDPLSKYAPPGARVPTYNGQPITLLNLATHTSALPREQPGGAAHRPVFVWPTREQRWKWLSTAKLKAAPGTQAA 182 (378)
T ss_pred CCCCCCCCcHHHhCcccccCCCCCCCCccHHHHhhCcCCCCCCCCCccccCCcccCCCHHHHHHHHhcCCCcCCCCCcee
Confidence 9999999999999998532 12378999999999999997543211111111 1256778888888899999999999
Q ss_pred cccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCC
Q 004807 379 YHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSF 458 (729)
Q Consensus 379 Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~ 458 (729)
|||.+|. |||.|||+++|++|++|++++||+||||++|.|...+ ....+.+..|. . +. +.
T Consensus 183 Ysn~~~~-lLg~iie~vtg~~~~~~l~~~I~~PLGM~~T~~~~~~-~~~~~~a~g~~--~-----------~~---~~-- 242 (378)
T PRK10662 183 YSNLAFD-LLADALAKAAGKPYTQLLREKITRPLGMKDTTFTPSP-DQCARLMVGEK--G-----------AS---PC-- 242 (378)
T ss_pred ecchhHH-HHHHHHHHHhCCCHHHHHHHhCccccCCCCCcCCCCh-hhhhhcccccC--C-----------CC---CC--
Confidence 9999999 9999999999999999999999999999999774322 22223332220 0 00 00
Q ss_pred CcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 459 QPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
.......|+||++||++||+||+++++++|.+...
T Consensus 243 -------------------~~~~~~~~aGGl~sT~~Dmak~~~~ll~~g~~~~~ 277 (378)
T PRK10662 243 -------------------NNTLAAIGSGGVYSTPGDMMRWMQQFLSSDNYQRS 277 (378)
T ss_pred -------------------ccccccCCCCccccCHHHHHHHHHHHhCCCCCCcc
Confidence 00011248999999999999999999998876543
No 3
>PRK03642 putative periplasmic esterase; Provisional
Probab=100.00 E-value=7.2e-48 Score=427.90 Aligned_cols=270 Identities=19% Similarity=0.328 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCC-------CCCCCCCCCccccccchHHHHH-HHHHH
Q 004807 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRY-------DPRPVQPDSLFPVFSVTKGITA-GMLHW 299 (729)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~-------~~~p~~~~t~f~i~SitK~~ta-~~v~~ 299 (729)
.+..+++++.+++.+++ ++||++++|+++|+++++++||+++.. .+.|+++||+|+|+|+||+||+ +++++
T Consensus 37 ~~~~~~ld~~i~~~~~~-~~pG~sv~V~~~g~iv~~~~~G~~~~~~g~~~~~~~~~~t~dT~f~iaSiTK~ftt~~ai~~ 115 (432)
T PRK03642 37 SEKLNQMDRWISQQIDA-GYPGVNLLIIKDNQIVYRKAWGYAKKYDGSTLLAHPVKATTNTMYDLASNTKMYATNFALQK 115 (432)
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEEEEECCEEEEEeeeeeccccccccccccCCCCCCCCEEechhhhHHHHHHHHHHH
Confidence 44567888888888874 699999999999999999999998853 4578999999999999999974 88899
Q ss_pred HHHCCCCCccCchhhhccCCccC------CCCCCcHHHHhcCCCCCCCCccCccc--CCCcCCCCHHHHHHHHHhcCCCC
Q 004807 300 LVDNGKLKLEENIANIWPEFKSN------GKDLIKVHHVLNHTSGLHNVSVDLSS--ENPLLICDWDECLNRIALSAPET 371 (729)
Q Consensus 300 lve~G~l~ldd~v~~ylP~~~~~------~~~~iTir~LLtHtSGl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 371 (729)
|+|+|+|+|||||.+|||+|... +++.|||||||+||||++........ .......+.+++++.+...++.+
T Consensus 116 Lve~G~l~ldd~v~~ylP~~~~~~~~~~~~~~~ITir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 195 (432)
T PRK03642 116 LVSEGKLDVNDLISKYIPGFKDSPGDKIKGKNTLRIIDLLHHSAGFPADPQYPNKAVAGALYSQDKSTTLEMIKKTPLEY 195 (432)
T ss_pred HHHCCCCCCcCcHHHhcccccccccccccCCCCCcHHHHhhCccCCCCCcccccccccccccccCHHHHHHHHhhCCCcC
Confidence 99999999999999999999753 24689999999999999874321111 11111235677888888889999
Q ss_pred CCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCC-ccccccceeccCcccccccccCCCC
Q 004807 372 EPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPG-VESRLASLTIDTDDLNKVSGINNRP 450 (729)
Q Consensus 372 ~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 450 (729)
+||++|.|||.+|. |||.|||+++|++|++|++++||+||||++|+|...... ...+.+......... ......|
T Consensus 196 ~PG~~~~Ysn~~~~-lLg~iie~vtG~~~~~~~~e~If~PLgM~~t~~~~~~~~~~~~~~a~~~~~g~~~---~~~~~~p 271 (432)
T PRK03642 196 QPGSKHIYSDVDYM-LLGFIVESITGQPLDRYVEESIYRPLGLTHTVFNPLQKGFKPQQIAATELNGNTR---DGVIHFP 271 (432)
T ss_pred CCCCceEecchHHH-HHHHHHHHHhCCCHHHHHHHhhhcccCCCcCcccCccccccHhhcCcccccCccc---ccccccc
Confidence 99999999999998 999999999999999999999999999999977422110 111111111000000 0000000
Q ss_pred CCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 451 DLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 451 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
.......+ . .... ...........|+||++||++||+||+++++++|.+.++
T Consensus 272 ~~~~~~~~-----~----~~~d-~~~~~~~g~~~g~gGl~sTa~Dlakf~~~lL~~G~~~g~ 323 (432)
T PRK03642 272 NIRTNTLW-----G----QVHD-EKAFYSMGGVSGHAGLFSNTGDMAVLMQVMLNGGGYGNV 323 (432)
T ss_pred ccccCcee-----e----eecC-cchhhhcCCcccccccccCHHHHHHHHHHHHhcCCcCCc
Confidence 00000000 0 0000 000001123357899999999999999999999998776
No 4
>PRK13128 D-aminopeptidase; Reviewed
Probab=100.00 E-value=1.9e-46 Score=420.20 Aligned_cols=238 Identities=20% Similarity=0.227 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccC
Q 004807 231 EAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEE 310 (729)
Q Consensus 231 ~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd 310 (729)
.+.+++++++++++..+||++|+|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+++|+ +|||
T Consensus 6 ~~~l~~~v~~l~~~~~~Pg~avaVv~~G~iv~~~~~G~ad~~~~~p~t~dT~f~IaSiTK~fTa~~il~Lveeg~-~LDd 84 (518)
T PRK13128 6 LPTLEAFVHAIPQNYKGPGGAVAVVKDGEVVLRHAWGFADLARRKAMTPETRMPICSVSKQFTCAVLLDCIGEPE-MLDA 84 (518)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEECCEEEEEEeEEeeccccCCCCCCCCeEechhhHHHHHHHHHHHHHhcCC-CCCC
Confidence 457778888888888999999999999999999999999999999999999999999999999999999999986 9999
Q ss_pred chhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcc--cCCCcCCCCHHHHHHHHHhc-CCCCCCCCceecccCcHHHH
Q 004807 311 NIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLS--SENPLLICDWDECLNRIALS-APETEPGQEQLYHYLSFGWL 387 (729)
Q Consensus 311 ~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~~~~~PG~~~~Ysn~~~~~l 387 (729)
||.+|||+|+. ..|||||||+||||++++..... ..++...+..++..+.+... ++.++||++|.|||.||. |
T Consensus 85 pv~~yLPe~~~---~~iTvr~LLtHTSGl~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~PGt~~~YSN~gy~-L 160 (518)
T PRK13128 85 ALAAYLDQFED---PRPAVRDLCNNQSGLRDYWALTVLCGAAPEGIFLPDQAQNLLRRLKTTHFAPGTHYSYCNGNFR-I 160 (518)
T ss_pred cHHHhcCCCCC---CCChHHHHhhCCCCCCccchhhhhcccccccCCCHHHHHHHHHhhccccCCCCCeeEEeCHHHH-H
Confidence 99999999985 46999999999999997532111 11222234556666666553 568999999999999998 9
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhh
Q 004807 388 CGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA 467 (729)
Q Consensus 388 Lg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 467 (729)
||.|||+++|++|++|++++||+||||++|++.. +......+..|....... + .|
T Consensus 161 Lg~iIE~vtG~~~~~~l~~~If~PLGM~~T~~~~--~~~~~~~a~Gy~~~~~~~----~-------~p------------ 215 (518)
T PRK13128 161 LADLIEQHTGRSLADLLAERIFAPAGMKTAELIP--DTALFDECTGYEGDTVRG----F-------LP------------ 215 (518)
T ss_pred HHHHHHHHhCCCHHHHHHHhhhcccCCCccccCc--cccccccccccccCCCCC----c-------cc------------
Confidence 9999999999999999999999999999997742 211222232322110000 0 00
Q ss_pred ccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCC
Q 004807 468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGG 507 (729)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg 507 (729)
. .+. ..+.|+||++||+.||+||+++++++.
T Consensus 216 ----~-~~~----~~~~g~gGl~STa~Dma~~~~~l~~~~ 246 (518)
T PRK13128 216 ----A-INR----IHWLGDAGICASLDDMIAWEQFIDRTR 246 (518)
T ss_pred ----C-ccc----ccccCCcceEcCHHHHHHHHHHHHccC
Confidence 0 000 112578899999999999999987653
No 5
>PF00144 Beta-lactamase: Beta-lactamase; InterPro: IPR001466 This entry represents the serine beta-lactamase-like superfamily. It is a group of diverse group of sequences that includes D-alanyl-D-alanine carboxypeptidase B, aminopeptidase (DmpB), alkaline D-peptidase, animal D-Ala-D-Ala carboxypeptidase homologues and the class A and C beta-lactamases and eukaryotic beta-lactamase homologues which are variously described as: transesterases, non-ribosomal peptide synthetases and hypothetical proteins. Many are serine peptidases belonging to MEROPS peptidase families S11 (D-Ala-D-Ala carboxypeptidase A family) and S12 (D-Ala-D-Ala carboxypeptidase B family, clan SE). The beta-lactamases are classified as both S11 and S12 non-peptidase homologues; these either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Beta-lactamase catalyses the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins []. There are four groups, classed A, B, C and D according to sequence, substrate specificity, and kinetic behaviour: class A (penicillinase-type) is the most common []. The genes for class A beta-lactamases are widely distributed in bacteria, frequently located on transmissible plasmids in Gram-negative organisms, although an equivalent chromosomal gene has been found in a few species []. Class A, C and D beta-lactamases are serine-utilising hydrolases - class B enzymes utilise a catalytic zinc centre instead. The 3 classes of serine beta-lactamase are evolutionarily related and belong to a superfamily that also includes DD-peptidases and other penicillin-binding proteins []. All these proteins contain an S-x-x-K motif, the Ser being the active site residue. Although clearly related, however, the sequences of the 3 classes of serine beta-lactamases vary considerably outside the active site. ; PDB: 1CI8_A 1CI9_B 1PW8_A 1PW1_A 1CEF_A 3PTE_A 1MPL_A 1PWG_A 1CEG_A 1IKG_A ....
Probab=100.00 E-value=7.3e-46 Score=400.02 Aligned_cols=244 Identities=28% Similarity=0.425 Sum_probs=194.8
Q ss_pred HHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 234 l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
+++.+++.+++.++||++++|+++|+++++.+||+++...+.|++++|+|+++|+||+||++++++|+++|+|+||+||.
T Consensus 1 ~~~~i~~~~~~~~~~g~a~~v~~~g~~~~~~~~G~~~~~~~~~~~~~t~~~i~SvsK~~ta~~v~~l~~~G~l~ld~~v~ 80 (329)
T PF00144_consen 1 IDRIIEQFMERYGIPGAAVAVIHNGKIVYEQYYGYADKQTGKPMTPDTVFRIGSVSKSFTATAVMQLIDEGKLDLDDPVS 80 (329)
T ss_dssp HHHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSGTTSBGG
T ss_pred ChHHHHHHHHhCCCcEEEEEEEECCEEEEEEEEeecccccCCCCCccceeeccCCcceeehhhhhhhhccccccccCccc
Confidence 57788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHH
Q 004807 314 NIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIE 393 (729)
Q Consensus 314 ~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie 393 (729)
+|||++.....++|||+|||+||||+++.......... ....+++++.+...++.++||+.|.|||.+|. |||.|||
T Consensus 81 ~ylp~~~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~-ll~~ile 157 (329)
T PF00144_consen 81 KYLPEFPDPGKEKITIRDLLTHTSGLPDYEASDELFGD--KPFWDELLQYLANLPLNFPPGTQFAYSNTNYQ-LLGEILE 157 (329)
T ss_dssp GTTTTGTTCGGTTEBHHHHHTTHSSHSSSSHTTTHTSH--HHHHHHHHHHHHHSCSSSSTTSEEE--HHHHH-HHHHHHH
T ss_pred ccccccccccccCcccceeceeecCCCccccccccccc--ccchhHHHhhhhcccccccccccccccCcchh-hhhHHHH
Confidence 99998877777889999999999999986332221110 01126899999999999999999999999998 9999999
Q ss_pred HHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhcccccc
Q 004807 394 RASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAV 473 (729)
Q Consensus 394 ~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 473 (729)
+++|++|+++++++||+||||++|.|.. +.......+..+.......... .
T Consensus 158 ~~tg~~~~~~~~~~i~~plgm~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------~ 208 (329)
T PF00144_consen 158 RVTGKSFEELLQENIFQPLGMKHTGFGP-PDAWPPRDAIGYYGNGDQASSP----------------------------P 208 (329)
T ss_dssp HHHTSHHHHHHHHHTTTTTTSTTEESSB-GGGGGGGBEEEEEETTEEECEE----------------------------S
T ss_pred HhccchhHHHHHHHHHHHhhcccccccc-cccccccccccccccccccccc----------------------------c
Confidence 9999999999999999999999997743 2222333333322111110000 0
Q ss_pred ccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 474 FNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 474 ~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
..... ...|+||+++|++||+||++++++++.+...
T Consensus 209 ~~~~~---~~~~aggl~st~~Dlak~~~~~~~~~~~~~~ 244 (329)
T PF00144_consen 209 GYNPN---PYYGAGGLFSTARDLAKFGQLLLNGGLILSP 244 (329)
T ss_dssp CTTHH---HHTTTTTEEECHHHHHHHHHHHHHTGGSSCH
T ss_pred ccccc---cccccCccchhhHHHHHHHHHHhCCCccchh
Confidence 00000 0128999999999999999888888877665
No 6
>COG1680 AmpC Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]
Probab=100.00 E-value=2.5e-39 Score=357.76 Aligned_cols=235 Identities=30% Similarity=0.444 Sum_probs=176.5
Q ss_pred ceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCC---ccCCC
Q 004807 248 LGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEF---KSNGK 324 (729)
Q Consensus 248 ~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~---~~~~~ 324 (729)
+|++++|+++|++++.+.+|+++...+.+++++|+|+|+|+||+|||+++++|+|+|+|+|||||++|||+. ....
T Consensus 54 ~g~a~av~~~g~~~~~~~~g~~~~~~~~~~~~~t~f~i~S~TK~~ta~~i~~LveeG~l~lddpV~~ylP~~~~~~~~~- 132 (390)
T COG1680 54 PGLALAVVLDGKTVVAKGYGVADEGYGGPVTPPTVFRIASVTKSFTATLLGKLVEEGKLDLDDPVSKYLPEGKDPATGG- 132 (390)
T ss_pred CceEEEEEECCEEEEEeccccccccccCCCCCCceeeehhhhHHHHHHHHHHHHHcCCCCCCchHHHhCCCccCCcCCc-
Confidence 599999999999989899999999999999999999999999999999999999999999999999999962 2223
Q ss_pred CCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcC--CCCCCCCceecccCcHHHHHHHHHHHHhCCCHHH
Q 004807 325 DLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA--PETEPGQEQLYHYLSFGWLCGGIIERASGKKFQE 402 (729)
Q Consensus 325 ~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~ 402 (729)
..|||||||+||||++...............+.+.+.+.+...+ ...+||+.+.|||.+|. +||.|+|+++|++|++
T Consensus 133 ~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pG~~~~Ysn~~~~-lLg~ive~v~G~~~~~ 211 (390)
T COG1680 133 APITLRDLLTHTSGLPFPEDYAYAVPKRLVQDQEAALEYLASLPPELAPPPGTAFAYSNSNYG-LLGAILERVTGKPLEE 211 (390)
T ss_pred cceeHHHhhhcccCCCCcccccccccchhhhhHHHHHHHHHhccccccCCCCcceeeecccHH-HHHHHHHHhcCCCHHH
Confidence 58999999999999997221101111112234555566777776 46677999999999999 9999999999999999
Q ss_pred HHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccc
Q 004807 403 ILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRA 482 (729)
Q Consensus 403 ~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (729)
+++++||+||||++|.+. .++....+.+.......... .....+..+ .....
T Consensus 212 ~~~~~i~~PLGm~~t~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-------------------~~~~~ 263 (390)
T COG1680 212 LLRERIFEPLGMTSTGFG-PPPAPQARLAAGLAPAVGGG--------GEVDDPGTF-------------------GLGSA 263 (390)
T ss_pred HHHHHhhcccCCCccccc-cChhhhcccccccccccccC--------CccccCccc-------------------ccccc
Confidence 999999999999999764 33333333322210000000 000011111 01111
Q ss_pred cCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 483 IIPAANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 483 ~~~agGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
..++||+++|++||+||++++++++.+.+.
T Consensus 264 ~~~~~gl~~t~~d~~~~~~~~l~~~~~~~~ 293 (390)
T COG1680 264 LAGAGGLFSTARDMARFGQALLNGGVLLGR 293 (390)
T ss_pred CCCCCceecccchHHHHHHHHhcCCCccch
Confidence 346899999999999999999999866555
No 7
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=99.97 E-value=3.4e-30 Score=286.60 Aligned_cols=193 Identities=26% Similarity=0.510 Sum_probs=163.5
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
|+|+||+|++.+++.|.|+++|++.++++|++|+|++||||||||||||+|+.+ |++++||||||+++++++|..+++
T Consensus 248 i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaDpHpGNi~v~~~--g~i~~lDfGi~g~l~~~~r~~l~~ 325 (517)
T COG0661 248 IDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSD--GRIVLLDFGIVGRLDPKFRRYLAE 325 (517)
T ss_pred eCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccCCCccceEEecC--CcEEEEcCcceecCCHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999976 899999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHcCCcCC-CCcHHHHHHHHHHHhhccC-ChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhh
Q 004807 81 MFFAAAEGDHVALLSAFAEMGLRLR-LDVPEQAMEVSTLFFRTSA-PANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEV 158 (729)
Q Consensus 81 L~~a~~~~D~~~~~~~l~~lG~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (729)
++.|+.++|++.+.+.+.++|+..+ .+.......+..++..... +.. ..+..+...+.+.. .
T Consensus 326 ~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~ 389 (517)
T COG0661 326 LLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPIYGKPLE------------EISFGEILDKLFEV----A 389 (517)
T ss_pred HHHHHHhhCHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHhhhCCChh------------hccHHHHHHHHHHH----H
Confidence 9999999999999999999999854 4555555555555543311 111 11112222333333 4
Q ss_pred hhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhhccCCCC
Q 004807 159 KRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKE 213 (729)
Q Consensus 159 ~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~~~~~p~ 213 (729)
.++. +++|++++++.|++.++||++++|+|++|+...+.|+..++...++.|.
T Consensus 390 ~~~~--~r~p~~l~ll~r~~~~vEg~~~~ldp~~~~~~~a~p~~~~~~~~~~~~~ 442 (517)
T COG0661 390 RRFP--MRLPPELVLLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQLSPK 442 (517)
T ss_pred HhcC--ccCCHHHHHHHHHHHHHHHHHHhhCccccHHHHhhHHHHHHHHHhhhHH
Confidence 4444 7999999999999999999999999999999999999999999998886
No 8
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=99.96 E-value=4.8e-30 Score=287.58 Aligned_cols=199 Identities=26% Similarity=0.395 Sum_probs=165.6
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSSSMKQAL 78 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~~~r~~l 78 (729)
++|++++|++.+.+.|+|++++++.++++|++|+|++||||||||||||+|+.++ +++++++|||||++++++.|+.+
T Consensus 243 i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~~r~~l 322 (537)
T PRK04750 243 MYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKEDKRYL 322 (537)
T ss_pred ecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999998762 13999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHcCCcCC-CCcHHHHHHHHHHHhhccC-ChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHH
Q 004807 79 AKMFFAAAEGDHVALLSAFAEMGLRLR-LDVPEQAMEVSTLFFRTSA-PANEAFETVKNLSEQRAKNLKVIQEKMKLNQK 156 (729)
Q Consensus 79 ~~L~~a~~~~D~~~~~~~l~~lG~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (729)
++++.|+..+|++.+++.+.++|...+ .+..++..++..++..+.. +.. ++ +....+.+++..
T Consensus 323 ~~~~~a~~~~D~~~v~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~l~-------~i-----~~~~~l~~l~~~--- 387 (537)
T PRK04750 323 AENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCEPIFDKPLA-------EI-----SFGHVLLRLFNT--- 387 (537)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCcc-------cc-----cHHHHHHHHHHH---
Confidence 999999999999999999999999744 3555555555554443321 211 11 112333444443
Q ss_pred hhhhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhhccCCCCCccc
Q 004807 157 EVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVS 217 (729)
Q Consensus 157 ~~~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~~~~~p~~~~~ 217 (729)
.++++ +.+|++++++.|++.++||++++|||++|+++.++||+.+++.++++|....+
T Consensus 388 -~r~~~--~~ip~~l~ll~ktl~~lEG~~r~LdP~~d~~~~a~p~l~~~~~~~~~~~~~~~ 445 (537)
T PRK04750 388 -ARRFN--VEIQPQLVLLQKTLLNVEGLGRQLDPQLDLWKTAKPFLERWMKEQVGPRALVR 445 (537)
T ss_pred -HHHCC--CcccHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcChHHHHH
Confidence 55565 79999999999999999999999999999999999999999999999876554
No 9
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=99.93 E-value=2.5e-25 Score=247.18 Aligned_cols=194 Identities=22% Similarity=0.437 Sum_probs=162.1
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
++|.+++++......+.++.+++..+++.++.|++.+|+||+|||||||+++++ |+++|+|||++++++++.|..+++
T Consensus 240 i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D~hPgNilv~~~--g~i~liDfG~~~~l~~~~r~~l~~ 317 (437)
T TIGR01982 240 IDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKD--GKIIALDFGIVGRLSEEDRRYLAE 317 (437)
T ss_pred ECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCCCCcccEEECCC--CcEEEEeCCCeeECCHHHHHHHHH
Confidence 579999999887777889999999999999999999999999999999999765 899999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHcCCcC-CCCcHHHHHHHHHHHhhccC-ChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhh
Q 004807 81 MFFAAAEGDHVALLSAFAEMGLRL-RLDVPEQAMEVSTLFFRTSA-PANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEV 158 (729)
Q Consensus 81 L~~a~~~~D~~~~~~~l~~lG~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (729)
++.|+..+|.+.+.+.+.++|+.. ..+...+..++..++..... +.. .....+.+.+++.. .
T Consensus 318 l~~a~~~~D~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~ 381 (437)
T TIGR01982 318 ILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIFGQPLK------------EISVGRLLAGLFKI----T 381 (437)
T ss_pred HHHHHHhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhCCChh------------hCCHHHHHHHHHHH----H
Confidence 999999999999999999999974 34655566666555543321 111 11122334444443 4
Q ss_pred hhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhhccCCCCC
Q 004807 159 KRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEP 214 (729)
Q Consensus 159 ~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~~~~~p~~ 214 (729)
.++. +++|++++++.|++.++||++++|+|++|+.+.++||+.+++.++++|..
T Consensus 382 ~~~~--~~~p~~~~~l~r~l~~leg~~~~L~p~~~~~~~~~p~~~~~~~~~~~~~~ 435 (437)
T TIGR01982 382 RDFN--MELQPQLLLLQKTLLTVEGVGRQLDPDLNMWKVAEPFVKRWIRKRLGPKA 435 (437)
T ss_pred HHCC--ccCCHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhcChhc
Confidence 4444 79999999999999999999999999999999999999999999998864
No 10
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=99.91 E-value=5.3e-24 Score=235.88 Aligned_cols=200 Identities=28% Similarity=0.464 Sum_probs=145.0
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSSSMKQAL 78 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~~~r~~l 78 (729)
++|+||+|++.+++.|+++.+|+..++++|++|||.+||||||||||||+|++++ +++++|+|||+++.++.++|..|
T Consensus 284 ~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~ 363 (538)
T KOG1235|consen 284 VDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDY 363 (538)
T ss_pred cCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999743 67999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHcCCcCCCCcHHHHHHHHHHHhhccCChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhh
Q 004807 79 AKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEV 158 (729)
Q Consensus 79 ~~L~~a~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (729)
+++|.|+...|...+.+...++|...+.+.+.+...+.........+.... ....................+....+..
T Consensus 364 ~~~~~a~~~~d~~~~~~~~~~~g~~~d~~~~~fa~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L 442 (538)
T KOG1235|consen 364 AELWLALVFEDEKAMQALAEQLGLGLDDLYPLFATALTGRPWDSVIGAGIT-KYLKGLEEDADENQKIASAKFPGISQLL 442 (538)
T ss_pred HHHHHHHhcccHHHHHHHHHHhccccchhhhhhHHHHhCCchhhccccchh-hhhhhhhhhhhhHHHHHHHHhhHHHHHH
Confidence 999999999888889999999998654444444444333222221110000 0011111111111222222222222222
Q ss_pred hhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhh
Q 004807 159 KRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQ 207 (729)
Q Consensus 159 ~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~ 207 (729)
.++|+.+.++.|+..+++++...++...+....+..+.+..+.
T Consensus 443 ------~~~p~~i~li~k~~~l~r~~~~~l~~~~~~~~~f~~~~~~~~~ 485 (538)
T KOG1235|consen 443 ------RRMPREILLILKTNDLLRGLSSNLGIPSSLERSFLEMARLCLR 485 (538)
T ss_pred ------HhchHhhhhhcccHHHHHhHHHHhccccccchHHHHHHHHHHH
Confidence 4779999999999999999999999988865444444444333
No 11
>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]
Probab=99.70 E-value=4.9e-17 Score=161.36 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=141.2
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
+.|++|+....+ .+.-|+.|+..+++.++++||++.|++.||+++||++... +.+|.|||||..+.+++++.+.|++
T Consensus 169 ~~G~pid~~~~~--sQ~~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~~-tk~i~LlDFGAsr~y~~~F~d~Y~~ 245 (363)
T KOG1234|consen 169 GQGLPIDKTAKL--SQETRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNGR-TKKIELLDFGASREYGEKFIDKYIR 245 (363)
T ss_pred hcCccchhhhcc--cHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhccCCC-cceEEEEeccccccccHHHHHHHHH
Confidence 468888887764 4578999999999999999999999999999999999875 5689999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHcCCcCCCCcHHHHHHHHHHHhhccCChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhhhh
Q 004807 81 MFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKR 160 (729)
Q Consensus 81 L~~a~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (729)
++.|++.+|.+.+.+...+||++...........-.+-++....+.. .-....+........++.++..+.++
T Consensus 246 ~~~aaa~~dr~~v~e~S~~lgfLtg~Es~~m~DAHv~sv~ilgepfa----~~~pydF~~q~~t~ri~~lipvmL~h--- 318 (363)
T KOG1234|consen 246 LLKAAADRDREGVIEMSRELGFLTGYESKVMEDAHVESVMILGEPFA----SDGPYDFGDQTVTDRIQNLIPVMLRH--- 318 (363)
T ss_pred HHHHHHhcchHHHHHHHHHhcccccchHHHHHHHhhhHhhhcccccc----CCCCcCcCccHHHHHHHhhhHHHHhc---
Confidence 99999999999999999999998432221111111111111111111 11112222333445566666654433
Q ss_pred cCCCCCCCcchhhhHHHHHHHHHHhhhcccccccccccccc
Q 004807 161 FNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPF 201 (729)
Q Consensus 161 ~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~ 201 (729)
+ +..+|.|.+.++|.+++..-+|.+|++.+.+.+++...
T Consensus 319 -R-L~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~lf~e~ 357 (363)
T KOG1234|consen 319 -R-LCPPPEETYSLHRKLSGAFLLCAKLGATVPCRDLFKEI 357 (363)
T ss_pred -c-CCCCcHHHHHHHHHhhhHHHHHHHhcCCCcHHHHHHHH
Confidence 2 25888899999999999999999999999988877543
No 12
>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]
Probab=99.67 E-value=2.6e-16 Score=164.56 Aligned_cols=187 Identities=19% Similarity=0.236 Sum_probs=142.6
Q ss_pred CceecCCHHhHhhcCC-CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC------------------------
Q 004807 2 DGIRLNDCESLEAFGV-NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP------------------------ 56 (729)
Q Consensus 2 ~G~ki~d~~~l~~~~~-d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~------------------------ 56 (729)
+|+++..+.+-+...+ =.++++..+++++++|++.++|.|||.||||++++..++
T Consensus 328 ~Gl~v~~~v~~~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~ 407 (565)
T KOG1236|consen 328 RGLSVLRFVKWKSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFR 407 (565)
T ss_pred ccccHHhhhhcccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecCCCccccccccchhhhHHhhhhhhhh
Confidence 4666666655333222 368899999999999999999999999999999997644
Q ss_pred -----------------CCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCcCCC-CcHHHHHHHHHH
Q 004807 57 -----------------HRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRL-DVPEQAMEVSTL 118 (729)
Q Consensus 57 -----------------g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG~~~~~-~~~~~~~~~~~~ 118 (729)
.++|+||-|++..+++..+.++..|+.|++..|...+.+.+.+..-.... |...+...+..+
T Consensus 408 ~e~~d~~~~~~~~~~~~P~lvflDtGiv~kLs~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEkl 487 (565)
T KOG1236|consen 408 SEVRDARFTDSPDLEYEPTLVFLDTGIVTKLSHQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKL 487 (565)
T ss_pred hhhhhhhhhccccccCCCeEEEecchhhhccChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccCCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999988765333 334455556555
Q ss_pred HhhccCChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhhhhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccc
Q 004807 119 FFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIM 198 (729)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~ 198 (729)
+...... .++ ....+.+.+.+++.+ ++.|+ +++..++..+.-++..+||.+++|||++|+.+..
T Consensus 488 v~~~~st--------~sl--~tl~i~~ll~em~tm----vreH~--V~ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~ 551 (565)
T KOG1236|consen 488 VLKARST--------KSL--RTLNIGDLLSEMFTM----VREHH--VRIDSNFTTVVLSILVLEGFGRQLDPDLDLFQLR 551 (565)
T ss_pred HHHhhhh--------ccc--CcCcHHHHHHHHHHH----HHHhh--eeeccchHHHHHHHHHHhhhccccCCCcchhhhH
Confidence 5433200 001 123345566677766 45555 7999999999999999999999999999988855
Q ss_pred cccchh
Q 004807 199 RPFAEY 204 (729)
Q Consensus 199 ~~~~~~ 204 (729)
.+++..
T Consensus 552 ~~~l~~ 557 (565)
T KOG1236|consen 552 TFLLNV 557 (565)
T ss_pred HHHHHH
Confidence 444443
No 13
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=98.94 E-value=1.5e-09 Score=107.58 Aligned_cols=60 Identities=37% Similarity=0.694 Sum_probs=49.9
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
|||++++|...+.+ .+++.+.+ .++|++.+||||+|||||||+++. +.+.+|||++.+..
T Consensus 125 IeG~~l~d~~~i~e------~~~~ki~~-~ikqlH~~G~~HGD~hpgNFlv~~---~~i~iID~~~k~~~ 184 (229)
T PF06176_consen 125 IEGVELNDIEDIDE------DLAEKIVE-AIKQLHKHGFYHGDPHPGNFLVSN---NGIRIIDTQGKRMS 184 (229)
T ss_pred ecCeecccchhcCH------HHHHHHHH-HHHHHHHcCCccCCCCcCcEEEEC---CcEEEEECcccccc
Confidence 68999999876542 45666664 579999999999999999999985 47999999999864
No 14
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.62 E-value=3.9e-08 Score=99.32 Aligned_cols=68 Identities=26% Similarity=0.493 Sum_probs=49.1
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL 78 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l 78 (729)
|+|..+.++..+. .++... +...+.+++..|++|+|||||||+++++ | |+|+|||++....++.-..+
T Consensus 125 i~G~tL~~~~~~~------~~~~~~-i~~~l~~lH~~gi~H~Dikp~Nili~~~--g-i~liDfg~~~~~~e~~a~d~ 192 (232)
T PRK10359 125 IEGVELNDMPEIS------EDVKAK-IKASIESLHQHGMVSGDPHKGNFIVSKN--G-LRIIDLSGKRCTAQRKAKDR 192 (232)
T ss_pred ECCccHHHhhhcc------HHHHHH-HHHHHHHHHHcCCccCCCChHHEEEeCC--C-EEEEECCCcccccchhhHHH
Confidence 4677676653321 223333 3445899999999999999999999865 6 99999999998865444433
No 15
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=98.44 E-value=2.5e-07 Score=91.66 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004807 18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF 97 (729)
Q Consensus 18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l 97 (729)
+..+++..+++++.++-...|++|+|+||+||++. + +++.|+|||++..++.. ...++.++|.+.+...+
T Consensus 118 ~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~--~~~~liDFG~a~~~~~~-------~~~~~~~~~~~~~~~~~ 187 (190)
T cd05145 118 EAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-D--GKPYIIDVSQAVELDHP-------NALEFLRRDIRNINRFF 187 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-C--CCEEEEEcccceecCCC-------CHHHHHHHHHHHHHHHh
Confidence 44667888887765554449999999999999997 4 79999999999999875 45566678887777665
Q ss_pred H
Q 004807 98 A 98 (729)
Q Consensus 98 ~ 98 (729)
.
T Consensus 188 ~ 188 (190)
T cd05145 188 R 188 (190)
T ss_pred h
Confidence 4
No 16
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=98.40 E-value=6e-07 Score=89.57 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH----HHHHHHHHhC
Q 004807 17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL----AKMFFAAAEG 88 (729)
Q Consensus 17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l----~~L~~a~~~~ 88 (729)
.+..+++..+++.. .+++..|++|+|+||+||+++.+ +++.|+|||+++.++.+.+..+ ...+.++..+
T Consensus 125 ~~~~~~~~~i~~~l-~~lh~~gi~H~Dl~p~Nill~~~--~~~~liDfg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (198)
T cd05144 125 EDPEEVLDEILEEI-VKAYKHGIIHGDLSEFNILVDDD--EKIYIIDWPQMVSTDHPNAEELLDRDVENILRFFRR 197 (198)
T ss_pred ccHHHHHHHHHHHH-HHHHHCCCCcCCCCcccEEEcCC--CcEEEEECCccccCCCccHHHHHHHHHHHHHHHHhc
Confidence 34567777777765 56788999999999999999864 8999999999999999999998 6777776543
No 17
>smart00090 RIO RIO-like kinase.
Probab=98.26 E-value=2e-06 Score=88.23 Aligned_cols=73 Identities=22% Similarity=0.417 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHcC-ccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004807 20 QKVVEEITRAYAHQIYVDG-FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFA 98 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~G-ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~ 98 (729)
..++..++++ +.+++..| ++|+|+||+||+++ + +++.|+|||++.......+ .+++++|.+.+...+.
T Consensus 151 ~~i~~qi~~~-l~~LH~~g~iiH~Dikp~NIli~-~--~~i~LiDFg~a~~~~~~~~-------~~~~~~d~~~~~~~~~ 219 (237)
T smart00090 151 FELYDDILEE-MRKLYKEGELVHGDLSEYNILVH-D--GKVVIIDVSQSVELDHPMA-------LEFLERDIRNIIRFFR 219 (237)
T ss_pred HHHHHHHHHH-HHHHHhcCCEEeCCCChhhEEEE-C--CCEEEEEChhhhccCCcch-------HHHHHHHHHHHHHHHH
Confidence 4677777755 66789999 99999999999997 3 7999999999999888775 4668999999999999
Q ss_pred HcCCc
Q 004807 99 EMGLR 103 (729)
Q Consensus 99 ~lG~~ 103 (729)
++|+.
T Consensus 220 ~~~~~ 224 (237)
T smart00090 220 RKGVD 224 (237)
T ss_pred HcCCC
Confidence 99985
No 18
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=98.17 E-value=3e-06 Score=83.36 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=71.6
Q ss_pred ceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHH
Q 004807 3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMF 82 (729)
Q Consensus 3 G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~ 82 (729)
|+++..+........+..++...+++.+..++...|++|+|+++.||++.+ +++++||||++...... ..
T Consensus 92 G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~---~~~~iIDf~qav~~~~p-------~a 161 (188)
T PF01163_consen 92 GVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDD---GKVYIIDFGQAVDSSHP-------NA 161 (188)
T ss_dssp TEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEET---TCEEE--GTTEEETTST-------TH
T ss_pred ccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeec---ceEEEEecCcceecCCc-------cH
Confidence 888888777664467899999999999999999999999999999999985 49999999999988753 23
Q ss_pred HHHHhCCHHHHHHHHHHcCCc
Q 004807 83 FAAAEGDHVALLSAFAEMGLR 103 (729)
Q Consensus 83 ~a~~~~D~~~~~~~l~~lG~~ 103 (729)
..++.+|.+-+.+.+.+.|..
T Consensus 162 ~~~l~RDi~ni~~fF~~~~~~ 182 (188)
T PF01163_consen 162 EELLRRDIENIIRFFKKKGVQ 182 (188)
T ss_dssp HHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 345567888888888888763
No 19
>PRK15442 beta-lactamase TEM; Provisional
Probab=98.13 E-value=0.00026 Score=74.36 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=34.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
+.|..|.++|+.|.+++++++..+++|+++||++|.
T Consensus 57 n~d~~fp~aSt~K~~i~~avl~~v~~g~l~L~~~v~ 92 (284)
T PRK15442 57 RPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIH 92 (284)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHCCCCCCCceEE
Confidence 678889999999999999999999999999999986
No 20
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=98.03 E-value=8.9e-06 Score=80.60 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=40.6
Q ss_pred cCCCHHHHHHHHHH--HHHHHH-HHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 15 FGVNKQKVVEEITR--AYAHQI-YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 15 ~~~d~~~la~~l~~--~~~~qi-f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
...+...+...+.+ ..+.++ ...|++|+|+||+||+++. +++.|+|||+.......
T Consensus 112 ~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~~---~~v~LiDFG~a~~~~~~ 170 (190)
T cd05147 112 APLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYHD---GKLYIIDVSQSVEHDHP 170 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEEC---CcEEEEEccccccCCCc
Confidence 34555555444433 334566 4889999999999999973 68999999999866543
No 21
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=4.2e-05 Score=83.45 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=72.0
Q ss_pred ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcC
Q 004807 256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH 335 (729)
Q Consensus 256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtH 335 (729)
..|+++|++ ++|+++++||+||.+|+.+++..++.|+|++|++|.-=-..+.. -+
T Consensus 47 ~sGkVLy~k-------------n~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~-----~~------- 101 (389)
T COG1686 47 DSGKVLYSK-------------NADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAK-----GG------- 101 (389)
T ss_pred CCCcEeecc-------------CCCCCCCccHHHHHHHHHHHHHHhhccCCCccceecccHhhhhc-----CC-------
Confidence 678888752 78899999999999999999999999999999988521111111 00
Q ss_pred CCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhC--CCHHHHHHHHhhhccC
Q 004807 336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASG--KKFQEILEEGIIQPLS 413 (729)
Q Consensus 336 tSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG--~~~~~~l~e~If~PLG 413 (729)
.|.++-. +....+.++++..+.- +| .|- ..-.+.|.+.| ..|-+.|.++ .+-||
T Consensus 102 ~S~~~l~--------~G~~~tv~dLl~gllv------------~S-aND--AA~aLAe~~~Gs~~~Fv~~MN~k-A~~LG 157 (389)
T COG1686 102 GSKMFLK--------PGETVTVRDLLKGLLV------------QS-AND--AAVALAEHLAGSEDAFVAKMNAK-AKELG 157 (389)
T ss_pred Cccceec--------cCCEEEHHHHHHHHHH------------hc-ccH--HHHHHHHHcCCCHHHHHHHHHHH-HHHhC
Confidence 1222110 0112445555554321 11 121 23345566665 3577777776 46999
Q ss_pred CCCccC
Q 004807 414 IDGELY 419 (729)
Q Consensus 414 m~~T~~ 419 (729)
|++|.|
T Consensus 158 m~nT~F 163 (389)
T COG1686 158 MKNTHF 163 (389)
T ss_pred CCCCEe
Confidence 999977
No 22
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=97.87 E-value=2.3e-05 Score=77.01 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807 17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
.....++..++.+........|++|+|+||+||++. + +.+.|+|||++.++..+.+..+.+
T Consensus 114 ~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~--~~~~liDfg~a~~~~~~~~~~~~~ 174 (187)
T cd05119 114 EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-D--GKVYIIDVPQAVEIDHPNAEEFLR 174 (187)
T ss_pred ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-C--CcEEEEECcccccccCcchHHHHH
Confidence 345667777776666444349999999999999998 4 799999999999999988877764
No 23
>PF00768 Peptidase_S11: D-alanyl-D-alanine carboxypeptidase This is family S11 in the peptidase classification. ; InterPro: IPR001967 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). The protein fold of the peptidase domain for members of this family resembles that of D-Ala-D-Ala-carboxypeptidase B, the type example for clan SE. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endo-peptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S27) of serine protease have been identified, these being grouped into 6 clans (SA, SB, SC, SE, SF and SG) on the basis of structural similarity and other functional evidence. Structures are known for four of the clans (SA, SB, SC and SE): these appear to be totally unrelated, suggesting at least four evolutionary origins of serine peptidases and possibly many more []. Not with standing their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C clans have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (SA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Bacterial cell walls are complex structures containing amino acids and amino sugars, with alternating chains of N-acetylglucosamine and N-acetyl-muramic acid units linked by short peptides []: the link peptide in Escherichia coli is L-alanyl-D-isoglutamyl-L-meso-diaminopimelyl-D-alanine. The chains are usually cross-linked between the carboxyl of D-alanine and the free amino group of diaminopimelate. During the synthesis of peptidoglycan, the precursor has the described tetramer sequence with an added C-terminal D-alanine []. D-Ala-D-Ala carboxypeptidase A is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor. There are three families of serine-type D-Ala-D-Ala peptidase, which are also known as low molecular weight penicillin-binding proteins. Family S11 contains only D-Ala-D-Ala peptidases, unlike families S12 and S13, which contain other enzymes, such as class C beta-lactamases and D-amino-peptidases []. Although these enzymes are serine proteases, some members of family S11 are partially inhibited by thiol-blocking agents [].; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 2BCF_A 1TVF_A 3MFD_B 1ES3_A 1ESI_A 1ES4_A 1ES2_A 1SKF_A 1ES5_A 1J9M_A ....
Probab=97.86 E-value=7.5e-05 Score=76.64 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=42.5
Q ss_pred CceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 247 ILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 247 ~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
+.+-+..|+ ..|+++|++ +++..+.+||+||.+|+.+++..+++|+|+++++|.
T Consensus 9 ~~a~saiv~d~~tG~iL~~k-------------n~~~~~~~ASlTKlmTa~~~le~~~~~~l~~~~~v~ 64 (240)
T PF00768_consen 9 ISAKSAIVMDADTGKILYSK-------------NADEKRPPASLTKLMTAYVVLEAIKNGKLSLDDKVT 64 (240)
T ss_dssp -SSSEEEEEETTTSEEEEEE-------------STTSEBE-GGGHHHHHHHHHHHHHHTTSSTTTCEEE
T ss_pred ccceEEEEEECCCCcChhhc-------------ccCceechhhHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 334444555 468888752 677889999999999999999999999999999864
No 24
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=97.83 E-value=7.4e-05 Score=81.87 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=39.2
Q ss_pred ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
..|+++|++ ++|..+.+||+||.+|+.+++..+++|+++|||.|.
T Consensus 48 ~TG~vL~~k-------------nad~~~~pAS~TKlMTa~v~~e~i~~g~l~ldd~v~ 92 (400)
T PRK10001 48 ASGKVLAEG-------------NADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVT 92 (400)
T ss_pred CCCcChhhc-------------CcCCCcCchHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence 578888753 567779999999999999999999999999999764
No 25
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=97.66 E-value=0.00013 Score=72.53 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.+ +..++..|++|+|+||+||++. + +++.++|||+.+..++.
T Consensus 94 ~~~~~i~~~-l~~lH~~gi~H~Dl~~~Nil~~-~--~~~~liDfg~a~~~~~~ 142 (199)
T TIGR03724 94 ELLREIGRL-VGKLHKAGIVHGDLTTSNIIVR-D--DKLYLIDFGLGKYSDEI 142 (199)
T ss_pred HHHHHHHHH-HHHHHHCCeecCCCCcceEEEE-C--CcEEEEECCCCcCCCcH
Confidence 566666654 4567899999999999999997 3 79999999998886544
No 26
>PRK14879 serine/threonine protein kinase; Provisional
Probab=97.66 E-value=0.0002 Score=71.76 Aligned_cols=65 Identities=26% Similarity=0.452 Sum_probs=47.8
Q ss_pred CceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 2 DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 2 ~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+|..+.+..... ...+..++..+.+ .+.+++..|++|+|+||+||++. + +++.++|||+++.-++
T Consensus 82 ~G~~L~~~~~~~--~~~~~~i~~~i~~-~l~~lH~~~i~H~Dl~p~Nil~~-~--~~~~liDf~~a~~~~~ 146 (211)
T PRK14879 82 EGEPLKDLINSN--GMEELELSREIGR-LVGKLHSAGIIHGDLTTSNMILS-G--GKIYLIDFGLAEFSKD 146 (211)
T ss_pred CCcCHHHHHHhc--cHHHHHHHHHHHH-HHHHHHhCCcccCCCCcccEEEE-C--CCEEEEECCcccCCCc
Confidence 455555543321 1145677777775 46678999999999999999998 3 6899999999887543
No 27
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=97.60 E-value=0.00044 Score=75.99 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=39.7
Q ss_pred ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
..|+++|++ ++|....+||+||.+|+.++++.+++|+++||++|.
T Consensus 55 ~tG~vL~~k-------------nad~~~~pASlTKlMTa~lvleai~~g~l~ld~~v~ 99 (403)
T PRK10793 55 NSGKVLAEQ-------------NADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT 99 (403)
T ss_pred CCCcEehhc-------------CcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence 578888763 667789999999999999999999999999999875
No 28
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=97.60 E-value=3.3e-05 Score=74.53 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++++.+.++....+...+++|+|+||+||++. + +++.+||||+++.-+
T Consensus 90 ~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~--~~~~liDf~~a~~~~ 138 (170)
T cd05151 90 EKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-D--GRLWLIDWEYAGMND 138 (170)
T ss_pred HHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-C--CeEEEEecccccCCC
Confidence 344444444333333344579999999999997 3 689999999988644
No 29
>PRK12274 serine/threonine protein kinase; Provisional
Probab=97.53 E-value=0.00024 Score=70.79 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCC-CCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDP-HPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAE 99 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDP-HPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~ 99 (729)
.+...+++ .++++...|++|.|. +|+||+++.+ |++.|+|||+....++.-+ +..-+..+|..-+.+.+..
T Consensus 95 ~~~~qi~~-~L~~lH~~GIvHrDL~kp~NILv~~~--g~i~LIDFG~A~~~~~~~~-----~~r~L~~rDl~~llk~~~~ 166 (218)
T PRK12274 95 AYFRAARR-LLQQLHRCGVAHNDLAKEANWLVQED--GSPAVIDFQLAVRGNPRAR-----WMRLLAREDLRHLLKHKRM 166 (218)
T ss_pred HHHHHHHH-HHHHHHHCcCccCCCCCcceEEEcCC--CCEEEEECCCceecCCcch-----HHHHHHHHHHHHHHHHHHh
Confidence 34444444 466799999999999 6999999864 8999999999997776443 3333445788888787655
No 30
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=97.46 E-value=0.00064 Score=74.29 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=38.9
Q ss_pred ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
..|+++|++ +.|..+.+||+||.+|+.+++..+++|+++||+.|.
T Consensus 45 ~tG~vL~~k-------------n~d~~~~pASlTKlMTa~lv~eai~~g~l~ld~~v~ 89 (388)
T PRK11397 45 TTGQILTAG-------------NEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89 (388)
T ss_pred CCCcChhhc-------------CcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence 568888753 567779999999999999999999999999999763
No 31
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=97.41 E-value=0.00054 Score=72.29 Aligned_cols=41 Identities=34% Similarity=0.546 Sum_probs=33.8
Q ss_pred ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
..|+++|++ ++|..+.+||+||.+|+.+++ +++++||++|.
T Consensus 50 ~tG~vL~~k-------------N~d~~~~pASlTKlmTalvvl----e~~l~ld~~v~ 90 (306)
T PRK11669 50 NTNKVIYSS-------------NPDLVVPIASITKLMTAMVVL----DAKLPLDEKLK 90 (306)
T ss_pred CCCcEEEeE-------------CcCCCcCchHHHHHHHHHHHH----HcCCCCCCEEE
Confidence 578888752 677889999999999999887 35889998874
No 32
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=97.32 E-value=0.00087 Score=68.96 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++...+++ .+..+...|++|+|.||+||++.++ +++.|+|||.+..-.
T Consensus 146 ~~~~~i~~-~l~~lH~~GI~HrDlkp~NILv~~~--~~v~LIDfg~~~~~~ 193 (239)
T PRK01723 146 EQWQAIGQ-LIARFHDAGVYHADLNAHNILLDPD--GKFWLIDFDRGELRT 193 (239)
T ss_pred HHHHHHHH-HHHHHHHCCCCCCCCCchhEEEcCC--CCEEEEECCCcccCC
Confidence 34445544 4778899999999999999999864 789999999887765
No 33
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=97.04 E-value=0.001 Score=66.73 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807 18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS 72 (729)
Q Consensus 18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~ 72 (729)
.++.+.+.+.+++ .++...|++|+|+||+||+|..++ ..++.||||+-+..-+.
T Consensus 119 ~~~~ll~~l~~~i-~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~~ 173 (206)
T PF06293_consen 119 QRRELLRALARLI-AKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRPS 173 (206)
T ss_pred hHHHHHHHHHHHH-HHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCCC
Confidence 3566677666655 556999999999999999999762 23799999998876653
No 34
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=96.79 E-value=0.0015 Score=64.77 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++...+++...+++...|++|+|+.|-||++.. |++.|||||+.-.++-..
T Consensus 127 ~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~~---~~v~iIDF~qav~~~hp~ 178 (197)
T cd05146 127 KNAYYQVLSMMKQLYKECNLVHADLSEYNMLWHD---GKVWFIDVSQSVEPTHPH 178 (197)
T ss_pred HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEC---CcEEEEECCCceeCCCCC
Confidence 4556667777766767899999999999999973 689999999999988544
No 35
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=96.76 E-value=0.0036 Score=72.38 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..+++..+++. +..++..|++|+|+||+||++. ++++.++|||+.+..+..
T Consensus 430 ~~~~~~~i~~~-L~~lH~~giiHrDlkp~NILl~---~~~~~liDFGla~~~~~~ 480 (535)
T PRK09605 430 NPELVRKVGEI-VAKLHKAGIVHGDLTTSNFIVR---DDRLYLIDFGLGKYSDLI 480 (535)
T ss_pred HHHHHHHHHHH-HHHHHhCCCccCCCChHHEEEE---CCcEEEEeCcccccCCch
Confidence 45566666654 4577899999999999999993 379999999999887653
No 36
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=96.69 E-value=0.0047 Score=64.53 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-----CCCCeEEEeccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-----PPHRPILLDFGLTK 68 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-----~~g~lvllDfG~v~ 68 (729)
.++.+.+.+ ++.++...|++|+|.+|+||+++.+ +++++.||||+.+.
T Consensus 141 ~~ll~~la~-~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~ 193 (268)
T PRK15123 141 RMLIKRVAT-MVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ 193 (268)
T ss_pred HHHHHHHHH-HHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence 345555444 3456699999999999999999852 24689999999884
No 37
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=96.66 E-value=0.0021 Score=59.72 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHH---cCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYV---DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~---~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..++..+.+++. .+.. .|++|+|.||+|+++.+ ++++.++|||.+...++.
T Consensus 89 ~~~~~~~~~~l~-~lh~~~~~~i~H~Dl~~~Nil~~~--~~~~~l~Df~~~~~~~~~ 142 (155)
T cd05120 89 EDIAEQLAELLA-KLHQLPLLVLCHGDLHPGNILVDD--GKILGIIDWEYAGYGPPA 142 (155)
T ss_pred HHHHHHHHHHHH-HHhCCCceEEEecCCCcceEEEEC--CcEEEEEecccccCCChH
Confidence 444555554443 3333 48999999999999986 378999999999876654
No 38
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.59 E-value=0.0025 Score=61.68 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
-.+++.+-+...++ ...|++|+|+-+.||++.. ++++|||||+-.
T Consensus 95 ~~~~r~vG~~vg~l-H~~givHGDLTtsNiIl~~---~~i~~IDfGLg~ 139 (204)
T COG3642 95 PDLLREVGRLVGKL-HKAGIVHGDLTTSNIILSG---GRIYFIDFGLGE 139 (204)
T ss_pred hHHHHHHHHHHHHH-HhcCeecCCCccceEEEeC---CcEEEEECCccc
Confidence 45666666666554 8999999999999999975 579999999865
No 39
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.0045 Score=63.40 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=70.2
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
|+|+.+..+.- ...+++++...+++.+-.-. +.|.+|||..+=||+|++| |.+++|||=++...+.+.-+-+
T Consensus 189 ieG~eL~~~r~---~~en~~~il~~il~~~~~~~-~~GiVHGDlSefNIlV~~d--g~~~vIDwPQ~v~~~hp~a~e~-- 260 (304)
T COG0478 189 IEGVELYRLRL---DVENPDEILDKILEEVRKAY-RRGIVHGDLSEFNILVTED--GDIVVIDWPQAVPISHPDAEEL-- 260 (304)
T ss_pred cccceeecccC---cccCHHHHHHHHHHHHHHHH-HcCccccCCchheEEEecC--CCEEEEeCcccccCCCCCHHHH--
Confidence 56766665542 45778999999999887765 9999999999999999976 8999999999999888765554
Q ss_pred HHHHHHhCCHHHHHHHHHHcCC
Q 004807 81 MFFAAAEGDHVALLSAFAEMGL 102 (729)
Q Consensus 81 L~~a~~~~D~~~~~~~l~~lG~ 102 (729)
+.+|.+-+++.+.+=..
T Consensus 261 -----l~RDv~nii~yFrrky~ 277 (304)
T COG0478 261 -----LERDVENIIKYFRRKYG 277 (304)
T ss_pred -----HHhHHHHHHHHHHHhcc
Confidence 35777777777765543
No 40
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=96.51 E-value=0.0021 Score=65.05 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHH---HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIY---VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif---~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++.+++++.+.+.+- ..++.|+|.||+||++.++ +++|++|||+.++.-++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~~-~~~i~iID~e~a~~~~~~~ 202 (239)
T PF01636_consen 146 EELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDPS-DGRIGIIDFEDAGWGDPAY 202 (239)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEESS-TTEEEE--GTT-EEEETHH
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEeccccccceeeec-cceeEEEecccceECCHHH
Confidence 3455556666666554 5889999999999999943 4788999999987765543
No 41
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=96.33 E-value=0.0034 Score=66.02 Aligned_cols=45 Identities=29% Similarity=0.562 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 25 EITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 25 ~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.+++.+++||+ .+|.+|.|.+|.|++|+++ |.|-|.|||+.+.+.
T Consensus 120 ~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~--G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 120 RLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSS--GVLKLADFGLARAFS 171 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCC--CcEeeeccchHHHhc
Confidence 45555555554 8999999999999999874 999999999988444
No 42
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=96.31 E-value=0.0045 Score=65.77 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
+..++. .+..++..|++|+|+||+||+++.+ |.+.|.|||+.+
T Consensus 107 ~~~i~~-~l~~lH~~~i~H~dl~p~NIll~~~--~~~~l~dfg~~~ 149 (305)
T cd05609 107 FAETVL-ALEYLHNYGIVHRDLKPDNLLITSM--GHIKLTDFGLSK 149 (305)
T ss_pred HHHHHH-HHHHHHHCCccccCCchHHEEECCC--CCEEEeeCCCcc
Confidence 333443 3467789999999999999999864 899999999875
No 43
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=96.26 E-value=0.0053 Score=60.00 Aligned_cols=54 Identities=28% Similarity=0.461 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
..++..+++++ ..+...|++|+|+||+||++... ++++.|+|||+....+....
T Consensus 95 ~~~~~~l~~~l-~~lh~~~~~H~dl~~~ni~~~~~-~~~~~l~d~~~~~~~~~~~~ 148 (215)
T cd00180 95 LRILLQILEGL-EYLHSNGIIHRDLKPENILLDSD-NGKVKLADFGLSKLLTSDKS 148 (215)
T ss_pred HHHHHHHHHHH-HHHHhCCeeccCCCHhhEEEeCC-CCcEEEecCCceEEccCCcc
Confidence 34455555544 56778899999999999999872 37999999999998877654
No 44
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.25 E-value=0.0033 Score=68.30 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHH
Q 004807 23 VEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLS 95 (729)
Q Consensus 23 a~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~ 95 (729)
.+.-++-++.||| .+||||.|.+|-||||... .-|-|=|||+++++.-.- -|.+ .+ .-..-.+-+
T Consensus 108 se~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~--~~iKiaDFGLARev~Skp--PYTe---YV-STRWYRAPE 179 (538)
T KOG0661|consen 108 SESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGN--DVIKIADFGLAREVRSKP--PYTE---YV-STRWYRAPE 179 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEeccc--ceeEecccccccccccCC--Ccch---hh-hcccccchH
Confidence 4444555555554 8999999999999999842 367889999999885431 1111 11 222444567
Q ss_pred HHHHcCCc-CCCCcHH
Q 004807 96 AFAEMGLR-LRLDVPE 110 (729)
Q Consensus 96 ~l~~lG~~-~~~~~~~ 110 (729)
+|.+-|+- .+.|+=.
T Consensus 180 vLLrs~~Ys~pvD~wA 195 (538)
T KOG0661|consen 180 VLLRSGYYSSPVDMWA 195 (538)
T ss_pred HhhhccccCCchHHHH
Confidence 77777764 3344433
No 45
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=96.25 E-value=0.0037 Score=63.68 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=26.0
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
...+.|+|.|||||++..+ + +++|||+.++.
T Consensus 152 ~~~~~HgD~~~~Nii~~~~--~-~~iIDwe~a~~ 182 (226)
T TIGR02172 152 TSTCLHGDFQIGNLITSGK--G-TYWIDLGDFGY 182 (226)
T ss_pred CCceEecCCCCCcEEEcCC--C-cEEEechhcCc
Confidence 4466899999999999864 4 99999998873
No 46
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.0034 Score=69.31 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=38.5
Q ss_pred HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHH
Q 004807 34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKM 81 (729)
Q Consensus 34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L 81 (729)
|..+|.+|+|.+|.||++-. |+|-|||||+...+.+++..-+.+-
T Consensus 476 IH~~gIVHSDLKPANFLlVk---G~LKLIDFGIA~aI~~DTTsI~kds 520 (677)
T KOG0596|consen 476 IHQHGIVHSDLKPANFLLVK---GRLKLIDFGIANAIQPDTTSIVKDS 520 (677)
T ss_pred HHHhceeecCCCcccEEEEe---eeEEeeeechhcccCccccceeecc
Confidence 45899999999999998764 8999999999999999887655443
No 47
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=96.23 E-value=0.0043 Score=66.81 Aligned_cols=66 Identities=26% Similarity=0.445 Sum_probs=45.6
Q ss_pred ceecCCHHhHhh-cCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCC-C--CCeEEEeccccc
Q 004807 3 GIRLNDCESLEA-FGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDP-P--HRPILLDFGLTK 68 (729)
Q Consensus 3 G~ki~d~~~l~~-~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~-~--g~lvllDfG~v~ 68 (729)
|..+.|+..... .......++...+++. ++.|...||+|+|.+|+||.+.... . ..+.+||||+++
T Consensus 104 G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar 175 (322)
T KOG1164|consen 104 GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR 175 (322)
T ss_pred CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence 444444433222 2345555555555554 7789999999999999999997642 1 359999999999
No 48
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=96.18 E-value=0.0051 Score=62.53 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 16 GVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 16 ~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
..+...+...+.++. +..+...|++|+|.+|.||++..+ +.+.|+|||.+..+....
T Consensus 94 ~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~ 152 (253)
T cd05122 94 TLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSD--GEVKLIDFGLSAQLSDTK 152 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccC--CeEEEeeccccccccccc
Confidence 344444443333333 467788999999999999999864 899999999998887654
No 49
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.0083 Score=67.23 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=42.2
Q ss_pred hcCCCHHHHHHHH---HHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 14 AFGVNKQKVVEEI---TRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 14 ~~~~d~~~la~~l---~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
..|+=.+.||+-- +.+..+.+..-||+|.|.+|.||||+.| |.|-|-|||+|.-+
T Consensus 722 rmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrd--GHIKLTDFGLCTGf 779 (1034)
T KOG0608|consen 722 RMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGF 779 (1034)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccC--Cceeeeeccccccc
Confidence 4566666655422 2233566778999999999999999986 89999999999755
No 50
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.05 E-value=0.0081 Score=65.51 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCC-CCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDP-HPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDP-HPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..+...++ --+..+...|++|+|. +|.||++..+ +++.|+|||+...+..
T Consensus 114 ~~~~~~i~-~aL~~lH~~gIiHrDL~KP~NILv~~~--~~ikLiDFGlA~~~~~ 164 (365)
T PRK09188 114 PAWFRSAH-RALRDLHRAGITHNDLAKPQNWLMGPD--GEAAVIDFQLASVFRR 164 (365)
T ss_pred HHHHHHHH-HHHHHHHHCCCeeCCCCCcceEEEcCC--CCEEEEECccceeccc
Confidence 34555554 3445678899999999 7999999654 7999999999999865
No 51
>PRK10271 thiK thiamine kinase; Provisional
Probab=95.89 E-value=0.031 Score=54.76 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=29.6
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.-..|.|+|||||+++.+ ++.+|||+..+.=++..
T Consensus 77 ~~p~H~D~~~~N~~~~~~---~~~lIDwe~a~~gDp~~ 111 (188)
T PRK10271 77 LAPLHMDVHAGNLVHSAS---GLRLIDWEYAGDGDIAL 111 (188)
T ss_pred eeeecCCCCCccEEEECC---CEEEEeCCcccCCCHHH
Confidence 456899999999999753 49999999999888754
No 52
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=95.87 E-value=0.011 Score=66.47 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..|+-++ .-+...|+||+|.||+||++.. ..|.|-|.|||.-..++.+
T Consensus 419 ~w~~~lv~Av-~~LH~~gvvhRDLkp~NIL~~~-~~g~lrltyFG~a~~~~~~ 469 (612)
T KOG0603|consen 419 QWAAELVSAV-DYLHEQGVVHRDLKPGNILLDG-SAGHLRLTYFGFWSELERS 469 (612)
T ss_pred HHHHHHHHHH-HHHHhcCeeecCCChhheeecC-CCCcEEEEEechhhhCchh
Confidence 3566665544 4568899999999999999962 2488999999999999988
No 53
>PRK11768 serine/threonine protein kinase; Provisional
Probab=95.86 E-value=0.0073 Score=65.17 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=27.4
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..|++|+|.||||+++. | .+.+|||+.++.=+.
T Consensus 195 ~~~liHgD~h~~NvL~~-d---~~~iIDFDd~~~g~~ 227 (325)
T PRK11768 195 RLLRLHGDCHPGNILWR-D---GPHFVDLDDARMGPA 227 (325)
T ss_pred CccceecCCCchhcccc-C---CcEEEeCCCCCCCCH
Confidence 56899999999999993 3 589999999985443
No 54
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=95.76 E-value=0.013 Score=57.29 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++|-.++++.-..==....+|.|.+||||+++.+ |++-+-|||..|.|.+..
T Consensus 152 kIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~--GqVKiCDFGIsG~L~dSi 203 (282)
T KOG0984|consen 152 KIAVSVVHALEFLHSKLSVIHRDVKPSNILINYD--GQVKICDFGISGYLVDSI 203 (282)
T ss_pred HhHHHHHHHHHHHHHHhhhhhccCCcceEEEccC--CcEEEcccccceeehhhh
Confidence 4555555555444446678999999999999986 899999999999987654
No 55
>PHA02882 putative serine/threonine kinase; Provisional
Probab=95.74 E-value=0.012 Score=62.29 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. ..++..|++|+|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 130 ~i~~qi~~~l-~~lH~~~iiHrDiKp~Nill~~~--~~~~l~DFGla~~~~ 177 (294)
T PHA02882 130 NIMKDMLTTL-EYIHEHGISHGDIKPENIMVDGN--NRGYIIDYGIASHFI 177 (294)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CcEEEEEcCCceeec
Confidence 3455555544 45678999999999999999754 789999999988764
No 56
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=95.72 E-value=0.0088 Score=63.06 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHH-------cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYV-------DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~-------~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+.+.-++.|+.||++ .+.+|.|.+|+|+++..| ..+.+.|||+.+.+++
T Consensus 122 L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~--c~lKI~DFGLAR~~~~ 177 (359)
T KOG0660|consen 122 LTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNAD--CDLKICDFGLARYLDK 177 (359)
T ss_pred ccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccC--CCEEeccccceeeccc
Confidence 677778899999885 899999999999999876 7899999999999964
No 57
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.68 E-value=0.022 Score=57.75 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhC
Q 004807 18 NKQKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEG 88 (729)
Q Consensus 18 d~~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~ 88 (729)
.+..+...=+..|+.||+ ..|..|.|.+|||++|..+ --+-+-|||+.+.-+.+.+..+..=+.--.-+
T Consensus 149 SPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSN--CvLKICDFGLARvee~d~~~hMTqEVVTQYYR 224 (449)
T KOG0664|consen 149 SPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSN--CILKICDFGLARTWDQRDRLNMTHEVVTQYYR 224 (449)
T ss_pred cCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccC--ceEEecccccccccchhhhhhhHHHHHHHHhc
Confidence 344445555677888887 5799999999999999763 56778999999999999998887554443333
No 58
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=95.68 E-value=0.0068 Score=62.08 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=28.2
Q ss_pred HcCccccCCCCCCeEEecCCCCCe-EEEecccccccCHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSSSM 74 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~~~ 74 (729)
..+++|+|.||+|++|.. +++ ++|||+.+..=++..
T Consensus 163 ~~~l~HGD~~~~Nvlv~~---~~i~giIDw~~a~~gDp~~ 199 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQD---GRLSAVIDFGCLGVGDPAC 199 (235)
T ss_pred CceEEeCCCCCCcEEEEC---CCEEEEEeCcccCcCChHH
Confidence 456899999999999974 465 699999876555443
No 59
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=95.63 E-value=0.014 Score=60.15 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. ..+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 107 ~~~~~~l~~~l-~~lH~~~i~H~dl~p~nilv~~~--~~~~l~dfg~~~~~~~ 156 (263)
T cd06625 107 RKYTRQILEGV-EYLHSNMIVHRDIKGANILRDSA--GNVKLGDFGASKRLQT 156 (263)
T ss_pred HHHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEeecccceeccc
Confidence 34455555544 45678999999999999999764 8999999999876643
No 60
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=95.63 E-value=0.031 Score=58.76 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=31.7
Q ss_pred HcCccccCCCCCCeEEecCCCCCe-EEEecccccccCHHHHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSSSMKQA 77 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~~~r~~ 77 (729)
...++|+|.||+||+|.++ +++ ++|||+++..=++..=-+
T Consensus 184 ~~~lvHGD~~~~Nilv~~~--~~~~gviDWe~a~iGDPa~Dla 224 (276)
T cd05152 184 HTVLVHGDLHPGHILIDED--ARVTGLIDWTEAKVGDPARDFV 224 (276)
T ss_pred CCeeEeCCCCCCcEEEeCC--CCEEEEECcHhcccCCHHHHHH
Confidence 3468999999999999853 675 699999998877765333
No 61
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=95.51 E-value=0.01 Score=59.58 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=30.8
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
...+.|+|.|||||++.++.++.+.||||+.++.=++.+
T Consensus 173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~~~~ 211 (223)
T cd05154 173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLA 211 (223)
T ss_pred CcEEEECCCCcccEEEcCCCCcEEEEEeccccccCChHH
Confidence 578899999999999986312568899999998665543
No 62
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=95.48 E-value=0.011 Score=64.87 Aligned_cols=52 Identities=29% Similarity=0.423 Sum_probs=43.2
Q ss_pred HHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807 26 ITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL 78 (729)
Q Consensus 26 l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l 78 (729)
.+++|.+|+| .+|++|||.+|.||||.+. ..-|-|-|||.....++....-|
T Consensus 537 aVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~-k~iLKLCDfGSA~~~~eneitPY 595 (752)
T KOG0670|consen 537 AVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNES-KNILKLCDFGSASFASENEITPY 595 (752)
T ss_pred HHHHHHHHHHHHHHHHHhcCeeecccCccceEeccC-cceeeeccCccccccccccccHH
Confidence 4678888888 7999999999999999863 34567899999999888776655
No 63
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=95.45 E-value=0.032 Score=57.30 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=28.3
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.-.+.|+|.|||||++..+ +.+++|||+.++-=++.
T Consensus 162 ~~~l~HgD~~~~Nil~~~~--~~~~iIDwe~a~~gdp~ 197 (244)
T cd05150 162 DLVVTHGDACLPNIIVDPG--KFSGFIDLGRLGVADRY 197 (244)
T ss_pred ceEEECCCCCCccEEEeCC--cEEEEEEccccccccHH
Confidence 4568999999999999753 44679999988754443
No 64
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=95.41 E-value=0.017 Score=63.14 Aligned_cols=48 Identities=31% Similarity=0.436 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+..++.+ +..+...|++|+|.+|.||+++.+ |.+.|.|||++..+...
T Consensus 107 ~~qi~~~-L~~lH~~givHrDLkp~NIli~~~--~~vkL~DfG~~~~~~~~ 154 (360)
T cd05627 107 IAETVLA-IDAIHQLGFIHRDIKPDNLLLDAK--GHVKLSDFGLCTGLKKA 154 (360)
T ss_pred HHHHHHH-HHHHHHCCeEccCCCHHHEEECCC--CCEEEeeccCCcccccc
Confidence 3344433 456679999999999999999764 89999999998877544
No 65
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=95.41 E-value=0.014 Score=62.75 Aligned_cols=46 Identities=28% Similarity=0.353 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++. ..+...|++|+|.+|.||++..+ |.+.|.|||+...+
T Consensus 101 ~~~qi~~~L-~~lH~~giiHrDlkp~Nili~~~--~~~kl~DfG~a~~~ 146 (325)
T cd05602 101 YAAEIASAL-GYLHSLNIVYRDLKPENILLDSQ--GHIVLTDFGLCKEN 146 (325)
T ss_pred HHHHHHHHH-HHHHHCCeEecCCCHHHeEECCC--CCEEEccCCCCccc
Confidence 455555554 45678999999999999999764 89999999988653
No 66
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=95.40 E-value=0.013 Score=60.78 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
..++..++.++. .+...|++|+|++|.||++..+ |++.|+|||+...+....
T Consensus 105 ~~i~~ql~~~l~-~Lh~~~~~H~dl~~~ni~i~~~--~~~~l~df~~~~~~~~~~ 156 (280)
T cd05581 105 RFYAAEILLALE-YLHSKGIIHRDLKPENILLDKD--MHIKITDFGTAKVLDPNS 156 (280)
T ss_pred HHHHHHHHHHHH-HHHHCCeeecCCCHHHeEECCC--CCEEecCCccccccCCcc
Confidence 445555555553 5679999999999999999865 899999999998887654
No 67
>PRK05231 homoserine kinase; Provisional
Probab=95.36 E-value=0.019 Score=61.69 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHcCccccCCCCCCeEEecCCCCCe-EEEecccccccCH
Q 004807 35 YVDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSS 72 (729)
Q Consensus 35 f~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~ 72 (729)
+..|+.|+|.||+|+++.. +++ ++|||+.+..=..
T Consensus 185 lp~~liHgD~~~~Nil~~~---~~~~~iIDf~~~~~~~~ 220 (319)
T PRK05231 185 LPRGVIHADLFRDNVLFEG---DRLSGFIDFYFACNDKL 220 (319)
T ss_pred CCcccCCCCCCCCcEEEEC---CceEEEEecccccCCch
Confidence 4569999999999999974 355 8999999876544
No 68
>PRK10345 hypothetical protein; Provisional
Probab=95.31 E-value=0.034 Score=55.94 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l 70 (729)
....+++.+.+-++..|.+|.|.+|.||+++.. ++++++|+|||-...+
T Consensus 109 ~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~ 159 (210)
T PRK10345 109 QLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF 159 (210)
T ss_pred HHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence 456777777888899999999999999999853 2348999994444444
No 69
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=95.29 E-value=0.019 Score=61.71 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++++ +..+...|++|+|.+|.||++..+ |.+.|.|||++..
T Consensus 100 ~~~~qi~~a-l~~lH~~givH~Dlkp~NIll~~~--~~~kL~DfG~~~~ 145 (325)
T cd05604 100 FYAAEIASA-LGYLHSINIVYRDLKPENILLDSQ--GHVVLTDFGLCKE 145 (325)
T ss_pred HHHHHHHHH-HHHHHHCCeeecCCCHHHeEECCC--CCEEEeecCCccc
Confidence 345555554 355678999999999999999865 8999999999765
No 70
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=95.29 E-value=0.021 Score=58.40 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+.-+...|++|+|.+|+||++..+ +.+.|.|||+.....
T Consensus 106 l~~lH~~~~~H~dl~p~nili~~~--~~~~l~d~g~~~~~~ 144 (250)
T cd05085 106 MAYLESKNCIHRDLAARNCLVGEN--NVLKISDFGMSRQED 144 (250)
T ss_pred HHHHHhCCeeecccChheEEEcCC--CeEEECCCccceecc
Confidence 345568899999999999999764 789999999876543
No 71
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=95.27 E-value=0.023 Score=58.15 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||+++.+ +++.|.|||+...+.
T Consensus 99 ~~~qi~~~L-~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~ 145 (252)
T cd05084 99 MVENAAAGM-EYLESKHCIHRDLAARNCLVTEK--NVLKISDFGMSREEE 145 (252)
T ss_pred HHHHHHHHH-HHHHhCCccccccchheEEEcCC--CcEEECccccCcccc
Confidence 344444433 34568899999999999999764 789999999987765
No 72
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=95.24 E-value=0.015 Score=62.51 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=25.4
Q ss_pred ccccCCCCCCeEEecCCCCC-eEEEecccccc
Q 004807 39 FFNGDPHPGNFLVSKDPPHR-PILLDFGLTKK 69 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~-lvllDfG~v~~ 69 (729)
.+|+|+||+|++++.+ .. .++||||-++.
T Consensus 199 iIH~D~~~~NVl~d~~--~~~~g~iDFdDa~~ 228 (331)
T COG2334 199 IIHGDLHPDNVLFDDD--TDVSGFIDFDDAGY 228 (331)
T ss_pred eeecCCCccceeEcCC--CCeeeEEEcccccc
Confidence 8999999999999865 33 89999999875
No 73
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=95.22 E-value=0.02 Score=61.56 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++ +..+...|++|+|.+|.||++..+ |++.|.|||+...+
T Consensus 110 ~~~qi~~~-l~~lH~~~ivHrDlkp~Nili~~~--~~~kl~DfG~~~~~ 155 (332)
T cd05614 110 YSGEIILA-LEHLHKLGIVYRDIKLENILLDSE--GHVVLTDFGLSKEF 155 (332)
T ss_pred HHHHHHHH-HHHHHHCCcEecCCCHHHeEECCC--CCEEEeeCcCCccc
Confidence 34444444 456678999999999999999865 89999999987654
No 74
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=95.12 E-value=0.013 Score=62.19 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=27.9
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++.|+|.||+|++++.+ +.+++|||+.+..=+
T Consensus 174 ~~~l~HgD~~~~Nil~~~~--~~~~iIDfe~a~~g~ 207 (296)
T cd05153 174 PRGVIHADLFRDNVLFDGD--ELSGVIDFYFACTDA 207 (296)
T ss_pred CCcCCccCcCcccEEEeCC--ceEEEeehhhhcCch
Confidence 4689999999999999863 445899999987643
No 75
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=95.11 E-value=0.027 Score=60.52 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+ ++.+...|++|+|.+|.||+++.+ |++.|.|||+...+..
T Consensus 108 ~~qi~~a-L~~lH~~~i~H~Dlkp~NIll~~~--~~~kL~Dfg~a~~~~~ 154 (330)
T cd05601 108 LAELVLA-IHSVHQMGYVHRDIKPENVLIDRT--GHIKLADFGSAARLTA 154 (330)
T ss_pred HHHHHHH-HHHHHHCCeEcccCchHheEECCC--CCEEeccCCCCeECCC
Confidence 3344443 356778999999999999999864 8999999999887754
No 76
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=95.10 E-value=0.024 Score=61.07 Aligned_cols=48 Identities=29% Similarity=0.486 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+ +..+...|++|+|.+|.||+++.+ +.+.|.|||+...+..
T Consensus 106 ~~~qi~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kL~Dfg~a~~~~~ 153 (333)
T cd05600 106 YMAEMFEA-VDALHELGYIHRDLKPENFLIDAS--GHIKLTDFGLSKGIVT 153 (333)
T ss_pred HHHHHHHH-HHHHHHCCccccCCCHHHEEECCC--CCEEEEeCcCCccccc
Confidence 34444443 346778999999999999999764 8999999999887654
No 77
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=95.05 E-value=0.024 Score=60.83 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||++...
T Consensus 101 ~~~ql~~~L-~~lH~~~ivH~dlkp~NIli~~~--~~~kL~DfG~~~~~ 146 (320)
T cd05590 101 YAAEITSAL-MFLHDKGIIYRDLKLDNVLLDHE--GHCKLADFGMCKEG 146 (320)
T ss_pred HHHHHHHHH-HHHHHCCeEeCCCCHHHeEECCC--CcEEEeeCCCCeec
Confidence 344444433 45678999999999999999865 89999999998753
No 78
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=95.03 E-value=0.031 Score=57.70 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+++..++++.. -+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 99 ~~~~~i~~~l~-~lH~~~i~H~dlkp~nil~~~~--~~~kl~dfg~~~~~~ 146 (257)
T cd05115 99 ELMHQVSMGMK-YLEGKNFVHRDLAARNVLLVNQ--HYAKISDFGLSKALG 146 (257)
T ss_pred HHHHHHHHHHH-HHHhcCeeecccchheEEEcCC--CcEEeccCCcccccc
Confidence 44555555553 4578999999999999999764 789999999987654
No 79
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=95.02 E-value=0.024 Score=62.74 Aligned_cols=51 Identities=35% Similarity=0.462 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 76 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~ 76 (729)
|..|+++ ++-+...|.+|.|.+|-|||++.| ++|-+=|||..+.|++....
T Consensus 180 AAeIldA-leylH~~GIIHRDlKPENILLd~d--mhikITDFGsAK~l~~~~~~ 230 (604)
T KOG0592|consen 180 AAEILDA-LEYLHSNGIIHRDLKPENILLDKD--GHIKITDFGSAKILSPSQKS 230 (604)
T ss_pred HHHHHHH-HHHHHhcCceeccCChhheeEcCC--CcEEEeeccccccCChhhcc
Confidence 3344443 345579999999999999999875 99999999999999998765
No 80
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=95.01 E-value=0.024 Score=61.38 Aligned_cols=48 Identities=33% Similarity=0.517 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++ +..+...|++|+|.+|.||+++.+ +.+.|.|||++..+..
T Consensus 106 i~~qi~~a-L~~LH~~giiH~Dlkp~NIll~~~--~~~kL~Dfg~~~~~~~ 153 (350)
T cd05573 106 YIAELVLA-LDSVHKLGFIHRDIKPDNILIDAD--GHIKLADFGLCKKMNK 153 (350)
T ss_pred HHHHHHHH-HHHHHHCCeeccCCCHHHeEECCC--CCEEeecCCCCccCcc
Confidence 44445544 456678999999999999999865 8999999999887664
No 81
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=95.01 E-value=0.035 Score=56.83 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++..++++. .-+...|++|+|.+|+||++..+ +.+.|.|||+...++...
T Consensus 103 ~~~~~l~~~l-~~lh~~~i~H~dl~~~ni~~~~~--~~~~l~dfg~~~~~~~~~ 153 (256)
T cd06612 103 AILYQTLKGL-EYLHSNKKIHRDIKAGNILLNEE--GQAKLADFGVSGQLTDTM 153 (256)
T ss_pred HHHHHHHHHH-HHHHHCCcccCCCCcceEEECCC--CcEEEcccccchhcccCc
Confidence 3444555444 34467899999999999999865 789999999998887543
No 82
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=95.01 E-value=0.025 Score=60.74 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++ +..+...|++|+|.+|.||+++.+ |.+.|.|||++...
T Consensus 101 ~~~qi~~~-l~~lH~~givH~dikp~NIll~~~--~~~kl~Dfg~~~~~ 146 (323)
T cd05575 101 YAAEIASA-LGYLHSLNIIYRDLKPENILLDSQ--GHVVLTDFGLCKEG 146 (323)
T ss_pred HHHHHHHH-HHHHHHCCeEeCCCCHHHeEECCC--CcEEEeccCCCccc
Confidence 44555554 355678999999999999999765 89999999987653
No 83
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=94.99 E-value=0.028 Score=60.77 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|.+|.||++..+ +.+.|.|||+...++.
T Consensus 122 ~i~~qi~~aL-~~LH~~~ivHrdikp~Nil~~~~--~~~kl~Dfg~~~~~~~ 170 (343)
T cd07878 122 FLIYQLLRGL-KYIHSAGIIHRDLKPSNVAVNED--CELRILDFGLARQADD 170 (343)
T ss_pred HHHHHHHHHH-HHHHHCCeecccCChhhEEECCC--CCEEEcCCccceecCC
Confidence 3444555544 33578999999999999999865 8999999999887654
No 84
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=94.98 E-value=0.029 Score=57.62 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..+++++ ..+...|+.|+|.+|+||+++.+ +.+.|.|||......
T Consensus 104 ~~~~qi~~al-~~lH~~~~~H~dl~p~nili~~~--~~~kl~Dfg~~~~~~ 151 (254)
T cd05083 104 QFSLDVAEGM-EYLESKKLVHRDLAARNILVSED--GVAKVSDFGLARVGS 151 (254)
T ss_pred HHHHHHHHHH-HHHHhCCeeccccCcceEEEcCC--CcEEECCCccceecc
Confidence 3455666655 45678999999999999999864 899999999887543
No 85
>PHA03207 serine/threonine kinase US3; Provisional
Probab=94.97 E-value=0.023 Score=62.87 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. ..+...|++|+|.+|.||+++.+ +++.|+|||+...+..
T Consensus 188 ~~i~~ql~~aL-~~LH~~givHrDlkp~Nill~~~--~~~~l~DfG~a~~~~~ 237 (392)
T PHA03207 188 ITIQRRLLEAL-AYLHGRGIIHRDVKTENIFLDEP--ENAVLGDFGAACKLDA 237 (392)
T ss_pred HHHHHHHHHHH-HHHHHCCccccCCCHHHEEEcCC--CCEEEccCccccccCc
Confidence 34555555553 55688999999999999999864 8999999999877654
No 86
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=94.92 E-value=0.033 Score=56.75 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=33.4
Q ss_pred HHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
=.||.+|.|.+|.||+++. .|.|-|-|||+.|++.+.
T Consensus 209 eKH~viHRDvKPSNILlDe--~GniKlCDFGIsGrlvdS 245 (391)
T KOG0983|consen 209 EKHGVIHRDVKPSNILLDE--RGNIKLCDFGISGRLVDS 245 (391)
T ss_pred HhcceeecccCccceEEcc--CCCEEeecccccceeecc
Confidence 3899999999999999976 489999999999998764
No 87
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=94.90 E-value=0.024 Score=59.65 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+. .-+...|++|+|.+|.||+++.+ +++.|.|||++....
T Consensus 107 ~~~~qi~~aL-~~LH~~~ivH~dlkp~Nil~~~~--~~~kl~DfG~~~~~~ 154 (288)
T cd07871 107 IFMFQLLRGL-SYCHKRKILHRDLKPQNLLINEK--GELKLADFGLARAKS 154 (288)
T ss_pred HHHHHHHHHH-HHHHhCCcccCCCCHHHEEECCC--CCEEECcCcceeecc
Confidence 3445555544 45578999999999999999864 899999999987643
No 88
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=94.89 E-value=0.022 Score=62.97 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=38.7
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
..-|..+|++|.|.+|-|+||+.. |.|=|=|||++.-+....+
T Consensus 254 I~~iH~~gyIHRDIKPdNlLiD~~--GHiKLSDFGLs~gl~~~~~ 296 (550)
T KOG0605|consen 254 IESIHQLGYIHRDIKPDNLLIDAK--GHIKLSDFGLSTGLDKKHR 296 (550)
T ss_pred HHHHHHcCcccccCChhheeecCC--CCEeeccccccchhhhhhh
Confidence 466789999999999999999875 9999999999988888777
No 89
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=94.88 E-value=0.032 Score=60.13 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||+++.+ +++.|.|||+.+.+..
T Consensus 179 ~~~qi~~aL-~~LH~~~ivHrDiKp~Nil~~~~--~~~kl~DfG~a~~~~~ 226 (338)
T cd05102 179 YSFQVARGM-EFLASRKCIHRDLAARNILLSEN--NVVKICDFGLARDIYK 226 (338)
T ss_pred HHHHHHHHH-HHHHHCCEECCCCccceEEEcCC--CcEEEeeccccccccc
Confidence 444555544 45578999999999999999864 8999999999887643
No 90
>PHA03212 serine/threonine kinase US3; Provisional
Probab=94.88 E-value=0.032 Score=61.85 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++++. .-+...|++|+|.+|.||++..+ |.+.|.|||+...
T Consensus 186 ~i~~qi~~aL-~ylH~~~IvHrDiKP~NIll~~~--~~vkL~DFG~a~~ 231 (391)
T PHA03212 186 AIERSVLRAI-QYLHENRIIHRDIKAENIFINHP--GDVCLGDFGAACF 231 (391)
T ss_pred HHHHHHHHHH-HHHHhCCcccCCCChHhEEEcCC--CCEEEEeCCcccc
Confidence 3444555443 45578999999999999999864 8999999998754
No 91
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=94.88 E-value=0.024 Score=60.69 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++++ +..+...|++|+|.+|.||+++.+ +.+.|.|||+...
T Consensus 101 ~~~qi~~~-l~~lH~~~ivHrDlkp~Nil~~~~--~~~kl~Dfg~~~~ 145 (316)
T cd05620 101 YAAEIVCG-LQFLHSKGIIYRDLKLDNVMLDRD--GHIKIADFGMCKE 145 (316)
T ss_pred HHHHHHHH-HHHHHHCCeEecCCCHHHeEECCC--CCEEeCccCCCee
Confidence 34455554 455678999999999999999864 8999999998764
No 92
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=94.88 E-value=0.032 Score=58.30 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. ..+...|++|+|.+|.||++..+ +++.|.|||+.+.+..
T Consensus 128 ~~~~ql~~aL-~~lH~~gi~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~ 176 (283)
T cd05091 128 HIVTQIAAGM-EFLSSHHVVHKDLATRNVLVFDK--LNVKISDLGLFREVYA 176 (283)
T ss_pred HHHHHHHHHH-HHHHHcCccccccchhheEecCC--CceEeccccccccccc
Confidence 3445555554 56679999999999999999864 7899999999887754
No 93
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=94.88 E-value=0.026 Score=58.14 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++..+++++ ..+.. .|++|+|.+|.||+++.+ +.+.|.|||....+....
T Consensus 105 ~~~~l~~~l-~~lH~~~~i~H~dl~~~ni~~~~~--~~~~l~d~g~~~~~~~~~ 155 (265)
T cd06605 105 IAVAVLKGL-TYLHEKHKIIHRDVKPSNILVNSR--GQIKLCDFGVSGQLVNSL 155 (265)
T ss_pred HHHHHHHHH-HHHcCCCCeecCCCCHHHEEECCC--CCEEEeecccchhhHHHH
Confidence 444445444 34556 899999999999999864 899999999988775543
No 94
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=94.79 E-value=0.035 Score=57.00 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 102 ~~~qi~~~L-~~lH~~~i~H~di~p~nil~~~~--~~~kl~dfg~~~~~~~ 149 (257)
T cd05040 102 YAVQIANGM-RYLESKRFIHRDLAARNILLASD--DKVKIGDFGLMRALPQ 149 (257)
T ss_pred HHHHHHHHH-HHHHhCCccccccCcccEEEecC--CEEEeccccccccccc
Confidence 344455444 45578899999999999999875 8999999999988754
No 95
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=94.79 E-value=0.035 Score=57.54 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.|+++..+ +++.|.|||+...+..
T Consensus 111 i~~~i~~~l-~~lH~~~i~h~dlkp~nili~~~--~~~~l~dfg~~~~~~~ 158 (267)
T cd05066 111 MLRGIASGM-KYLSDMGYVHRDLAARNILVNSN--LVCKVSDFGLSRVLED 158 (267)
T ss_pred HHHHHHHHH-HHHHHCCEeehhhchhcEEECCC--CeEEeCCCCccccccc
Confidence 334444443 45578899999999999999764 7899999999987754
No 96
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=94.78 E-value=0.038 Score=59.58 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+ ++.+...|++|+|.+|.||++..+ |.+.|.|||++..+..
T Consensus 108 ~~qi~~~-L~~lH~~~iiHrDlkp~Nill~~~--~~~kl~DfG~a~~~~~ 154 (331)
T cd05624 108 IAEMVLA-IHSIHQLHYVHRDIKPDNVLLDMN--GHIRLADFGSCLKMNQ 154 (331)
T ss_pred HHHHHHH-HHHHHHCCeeeccCchHHEEEcCC--CCEEEEeccceeeccC
Confidence 3344433 345678999999999999999764 8999999999877654
No 97
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=94.78 E-value=0.026 Score=61.45 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++..++++. .-+...|++|+|.+|.||+++.+ +++.|.|||+...+.
T Consensus 171 ~~i~~qi~~aL-~~LH~~~ivHrDlkp~NIll~~~--~~~kL~DfG~~~~~~ 219 (353)
T PLN00034 171 ADVARQILSGI-AYLHRRHIVHRDIKPSNLLINSA--KNVKIADFGVSRILA 219 (353)
T ss_pred HHHHHHHHHHH-HHHHHCCEeecCCCHHHEEEcCC--CCEEEcccccceecc
Confidence 34566666653 55678999999999999999865 899999999987664
No 98
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=94.76 E-value=0.052 Score=54.66 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHH--HHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 17 VNKQKVVEEITRAY--AHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 17 ~d~~~la~~l~~~~--~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++-.++......++ ++++.... +-|.|.+|+||++..+ +.+|+.|||.+...+-
T Consensus 124 ~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~--~~~vl~D~GS~~~a~i 181 (302)
T KOG2345|consen 124 VSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDS--GLPVLMDLGSATQAPI 181 (302)
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCC--CceEEEeccCccccce
Confidence 44444444433333 77888888 9999999999999864 8999999999987654
No 99
>PHA03210 serine/threonine kinase US3; Provisional
Probab=94.76 E-value=0.028 Score=64.52 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+ +.-+...|++|+|.+|.||++..+ |++.|.|||+...+..
T Consensus 271 ~i~~ql~~a-L~yLH~~gIiHrDLKP~NILl~~~--~~vkL~DFGla~~~~~ 319 (501)
T PHA03210 271 AIMKQLLCA-VEYIHDKKLIHRDIKLENIFLNCD--GKIVLGDFGTAMPFEK 319 (501)
T ss_pred HHHHHHHHH-HHHHHhCCeecCCCCHHHEEECCC--CCEEEEeCCCceecCc
Confidence 345555544 345578999999999999999865 8999999999987754
No 100
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=94.75 E-value=0.031 Score=60.59 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+ +.-+...|++|+|.+|.||+++.+ |.+.|.|||+...++.
T Consensus 136 ~~~qi~~a-L~~LH~~~ivHrDLkp~NILl~~~--~~ikL~DFG~a~~~~~ 183 (340)
T PTZ00426 136 YAAQIVLI-FEYLQSLNIVYRDLKPENLLLDKD--GFIKMTDFGFAKVVDT 183 (340)
T ss_pred HHHHHHHH-HHHHHHCCeEccCCCHHHEEECCC--CCEEEecCCCCeecCC
Confidence 44444443 445678999999999999999764 8999999999987754
No 101
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=94.74 E-value=0.052 Score=62.02 Aligned_cols=61 Identities=21% Similarity=0.475 Sum_probs=48.1
Q ss_pred hcCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeE--EEecccccccCHHH
Q 004807 14 AFGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPI--LLDFGLTKKLSSSM 74 (729)
Q Consensus 14 ~~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lv--llDfG~v~~l~~~~ 74 (729)
+.|.--.++...|.++. ++-+.++|.+|.|.+||||+.....+|+.+ |.|||+.+.+++..
T Consensus 114 ~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s 178 (732)
T KOG4250|consen 114 AYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS 178 (732)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC
Confidence 34555566666666655 556679999999999999998876568865 69999999999987
No 102
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=94.74 E-value=0.037 Score=60.19 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++ +..+...|++|+|.+|.||++..+ +++.|.|||+.+....
T Consensus 124 ~~~qi~~a-L~~LH~~givHrDikp~Nill~~~--~~~kl~Dfg~~~~~~~ 171 (355)
T cd07874 124 LLYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAGT 171 (355)
T ss_pred HHHHHHHH-HHHHHhCCcccCCCChHHEEECCC--CCEEEeeCcccccCCC
Confidence 34444443 345678999999999999999865 8999999999976543
No 103
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=94.73 E-value=0.033 Score=61.21 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=33.2
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+..+...|++|+|.+|.||+++.+ +.+.|.|||++..+.
T Consensus 114 l~~lH~~~ivHrDlkp~Nill~~~--~~ikL~DFG~a~~~~ 152 (376)
T cd05598 114 IESVHKMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGFR 152 (376)
T ss_pred HHHHHHCCeEeCCCCHHHEEECCC--CCEEEEeCCCCcccc
Confidence 345678999999999999999865 899999999986553
No 104
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=94.73 E-value=0.034 Score=59.72 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++.+ ++-+...|++|+|.+|.||+++.+ +.+.|.|||+.+.
T Consensus 100 ~~~qi~~~-L~~lH~~~ivHrDlkp~NIll~~~--~~~kl~DfG~a~~ 144 (323)
T cd05571 100 YGAEIVSA-LGYLHSCDVVYRDLKLENLMLDKD--GHIKITDFGLCKE 144 (323)
T ss_pred HHHHHHHH-HHHHHhCCeEeCCCCHHHEEECCC--CCEEEeeCCCCcc
Confidence 33444443 355678999999999999999864 8999999998764
No 105
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=94.72 E-value=0.035 Score=56.57 Aligned_cols=52 Identities=27% Similarity=0.359 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
.++..++.+. ..+...|++|+|.+|+||++..+ +.+.|.|||....+.....
T Consensus 103 ~~~~~i~~~l-~~lH~~~i~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~ 154 (254)
T cd06627 103 VYVYQVLQGL-AYLHEQGVIHRDIKAANILTTKD--GVVKLADFGVATKLNDVSK 154 (254)
T ss_pred HHHHHHHHHH-HHHhhCCcccCCCCHHHEEECCC--CCEEEeccccceecCCCcc
Confidence 4455555555 45679999999999999999864 8999999999998876544
No 106
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=94.72 E-value=0.033 Score=60.86 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=36.1
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
+.-+...|++|+|.+|.||+++.+ |.+.|.|||+++.+....+
T Consensus 114 L~~lH~~givHrDlKp~NILi~~~--~~vkL~DFGla~~~~~~~~ 156 (363)
T cd05628 114 IDSIHQLGFIHRDIKPDNLLLDSK--GHVKLSDFGLCTGLKKAHR 156 (363)
T ss_pred HHHHHhCCeEecCCCHHHeEECCC--CCEEEeeccCccccccccc
Confidence 345678999999999999999764 8999999999988765443
No 107
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=94.71 E-value=0.029 Score=58.92 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...++
T Consensus 114 ~i~~qi~~aL-~~lH~~~iiH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~ 161 (290)
T cd07862 114 DMMFQLLRGL-DFLHSHRVVHRDLKPQNILVTSS--GQIKLADFGLARIYS 161 (290)
T ss_pred HHHHHHHHHH-HHHHHCCeeeCCCCHHHEEEcCC--CCEEEccccceEecc
Confidence 3444555443 45578999999999999999865 899999999987654
No 108
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=94.71 E-value=0.04 Score=56.99 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. ..+...|++|+|.+|.||++..+ +++.|.|||....++.
T Consensus 105 ~~~~~~l~~aL-~~lH~~~i~H~dl~p~Nill~~~--~~~~L~dfg~~~~~~~ 154 (262)
T cd05071 105 VDMAAQIASGM-AYVERMNYVHRDLRAANILVGEN--LVCKVADFGLARLIED 154 (262)
T ss_pred HHHHHHHHHHH-HHHHHCCccccccCcccEEEcCC--CcEEeccCCceeeccc
Confidence 33455555555 44789999999999999999864 7899999999987764
No 109
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=94.71 E-value=0.03 Score=59.98 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++++ +.-+...|++|+|.+|.||+++.+ |++.|.|||++..
T Consensus 101 ~~~qi~~~-L~~lH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~~~~ 145 (321)
T cd05603 101 YAAEVASA-IGYLHSLNIIYRDLKPENILLDSQ--GHVVLTDFGLCKE 145 (321)
T ss_pred HHHHHHHH-HHHHHHCCeEeccCCHHHeEECCC--CCEEEccCCCCcc
Confidence 44455544 344568999999999999999865 8999999998865
No 110
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=94.71 E-value=0.021 Score=60.38 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+ ++.+...|++|+|.+|.||+++.+ +.+.|.|||+...+..+
T Consensus 121 ~~~ql~~~-l~~lH~~givH~dl~p~Nilv~~~--~~~~l~dfg~~~~~~~~ 169 (292)
T cd06657 121 VCLAVLKA-LSVLHAQGVIHRDIKSDSILLTHD--GRVKLSDFGFCAQVSKE 169 (292)
T ss_pred HHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEEcccccceecccc
Confidence 34444443 366678999999999999999865 78999999988776653
No 111
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=94.69 E-value=0.032 Score=60.08 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..+++++ .-+...|++|+|.+|.||+++.+ +++.|.|||+++..
T Consensus 99 ~~~~qi~~aL-~~LH~~~ivHrDikp~NIll~~~--~~~kL~DfG~~~~~ 145 (328)
T cd05593 99 FYGAEIVSAL-DYLHSGKIVYRDLKLENLMLDKD--GHIKITDFGLCKEG 145 (328)
T ss_pred HHHHHHHHHH-HHHHhCCeEecccCHHHeEECCC--CcEEEecCcCCccC
Confidence 3445555543 55678999999999999999864 89999999998753
No 112
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=94.68 E-value=0.035 Score=59.82 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++.+ +.-+...|++|+|.+|.||+++.+ +.+.|.|||++..
T Consensus 101 i~~qi~~~-l~~lH~~~ivH~Dikp~Nili~~~--~~~kL~DfG~~~~ 145 (329)
T cd05618 101 YSAEISLA-LNYLHERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKE 145 (329)
T ss_pred HHHHHHHH-HHHHHHCCeeeCCCCHHHEEECCC--CCEEEeeCCcccc
Confidence 44444444 455678999999999999999865 8999999999865
No 113
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=94.68 E-value=0.042 Score=57.57 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+ +.-+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 113 ~i~~~i~~a-L~~lH~~gi~H~dlkp~Nil~~~~--~~~~l~dfg~~~~~~ 160 (284)
T cd05079 113 KYAVQICKG-MDYLGSRQYVHRDLAARNVLVESE--HQVKIGDFGLTKAIE 160 (284)
T ss_pred HHHHHHHHH-HHHHHHCCeeecccchheEEEcCC--CCEEECCCccccccc
Confidence 344455544 356678999999999999999864 889999999988764
No 114
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=94.66 E-value=0.027 Score=57.70 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
..++..++++ +..+...|++|.|.+|.||++..+ +++.|+|||....+
T Consensus 101 ~~~~~qi~~~-L~~Lh~~~i~H~dikp~NIl~~~~--~~~~l~Dfg~~~~~ 148 (260)
T PF00069_consen 101 LKIAYQILEA-LAYLHSKGIVHRDIKPENILLDEN--GEVKLIDFGSSVKL 148 (260)
T ss_dssp HHHHHHHHHH-HHHHHHTTEEESSBSGGGEEESTT--SEEEESSGTTTEES
T ss_pred cccccccccc-cccccccccccccccccccccccc--cccccccccccccc
Confidence 4556666665 577889999999999999999854 89999999998754
No 115
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=94.65 E-value=0.036 Score=58.14 Aligned_cols=48 Identities=27% Similarity=0.408 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|++|.||++..+ +++.|.|||+...+..
T Consensus 110 ~~~ql~~~l-~~lH~~~~~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~ 157 (288)
T cd05583 110 YIAEIVLAL-DHLHQLGIIYRDIKLENILLDSE--GHVVLTDFGLSKEFLA 157 (288)
T ss_pred HHHHHHHHH-HHHHHCCeeccCCCHHHeEECCC--CCEEEEECcccccccc
Confidence 344555544 45578999999999999999764 8999999999877643
No 116
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=94.65 E-value=0.035 Score=59.58 Aligned_cols=44 Identities=32% Similarity=0.482 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
+..++++ +..+...|++|+|.+|.||+++.+ |++.|.|||+.+.
T Consensus 106 ~~qi~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~ 149 (323)
T cd05584 106 LSEISLA-LEHLHQQGIIYRDLKPENILLDAQ--GHVKLTDFGLCKE 149 (323)
T ss_pred HHHHHHH-HHHHHHCCeecCCCCHHHeEECCC--CCEEEeeCcCCee
Confidence 3344443 456678999999999999999764 8999999998764
No 117
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=94.64 E-value=0.034 Score=58.98 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 142 ~i~~~i~~al-~~lH~~~ivH~dlkp~Nill~~~--~~~kl~DfG~~~~~~~ 190 (304)
T cd05096 142 HVALQIASGM-KYLSSLNFVHRDLATRNCLVGEN--LTIKIADFGMSRNLYA 190 (304)
T ss_pred HHHHHHHHHH-HHHHHCCccccCcchhheEEcCC--ccEEECCCccceeccc
Confidence 4555555544 34678999999999999999864 8999999999876643
No 118
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=94.63 E-value=0.034 Score=59.88 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=35.0
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+.-+...|++|+|.+|.||+++.+ |.+.|.|||++..+++.
T Consensus 131 L~~LH~~~ivH~dlkp~NIll~~~--~~~kl~Dfg~~~~~~~~ 171 (329)
T PTZ00263 131 FEYLHSKDIIYRDLKPENLLLDNK--GHVKVTDFGFAKKVPDR 171 (329)
T ss_pred HHHHHHCCeeecCCCHHHEEECCC--CCEEEeeccCceEcCCC
Confidence 345678999999999999999864 89999999999887653
No 119
>PRK12396 5-methylribose kinase; Reviewed
Probab=94.63 E-value=0.041 Score=60.17 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=45.0
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEe--cccccccCHHHHHHHHHHHHHHHhCCH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLD--FGLTKKLSSSMKQALAKMFFAAAEGDH 90 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllD--fG~v~~l~~~~r~~l~~L~~a~~~~D~ 90 (729)
...++|+|.|||||+|.++ .+.+|| |+.+|.+.=+.=.-++.|+++...++.
T Consensus 226 ~~aLlHGDlHtGSI~v~~~---~~kvIDpEFAfyGP~gFDiG~~lanll~ay~~~~~ 279 (409)
T PRK12396 226 AQALIHGDLHTGSVFVKND---STKVIDPEFAFYGPMGYDIGNVMANLMFAWVNADA 279 (409)
T ss_pred chhhccCcCCCCCEEecCC---ceEEEcccccccCCcHHHHHHHHHHHHHHHhcCcc
Confidence 5678999999999999875 688888 788999988888889999999987654
No 120
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=94.63 E-value=0.036 Score=59.44 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.++ ..+...|++|+|.+|.||+++.+ |.+.|.|||++...
T Consensus 101 ~~~qi~~aL-~~LH~~~ivHrDikp~Nill~~~--~~~kL~Dfg~~~~~ 146 (321)
T cd05591 101 YAAEVTLAL-MFLHRHGVIYRDLKLDNILLDAE--GHCKLADFGMCKEG 146 (321)
T ss_pred HHHHHHHHH-HHHHHCCeeccCCCHHHeEECCC--CCEEEeecccceec
Confidence 444444443 55678999999999999999865 89999999988653
No 121
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=94.62 E-value=0.026 Score=60.62 Aligned_cols=38 Identities=32% Similarity=0.669 Sum_probs=33.1
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
+..+...|.+|.|.+||||++.+. .++-+|+|||+...
T Consensus 145 l~~~h~~GIvHRDiKpsNFL~n~~-t~rg~LvDFgLA~~ 182 (418)
T KOG1167|consen 145 LAHLHKNGIVHRDIKPSNFLYNRR-TQRGVLVDFGLAQR 182 (418)
T ss_pred hhhhhccCccccCCCccccccccc-cCCceEEechhHHH
Confidence 345558999999999999999986 78999999999876
No 122
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=94.62 E-value=0.036 Score=59.15 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++ +.-+...|++|+|.+|.||++..+ |.+.|.|||+....
T Consensus 98 ~~~qi~~~-l~~lH~~~i~HrDlkp~Nili~~~--~~~kl~Dfg~~~~~ 143 (312)
T cd05585 98 YTAELLCA-LENLHKFNVIYRDLKPENILLDYQ--GHIALCDFGLCKLN 143 (312)
T ss_pred HHHHHHHH-HHHHHhCCeEeCCCCHHHeEECCC--CcEEEEECcccccC
Confidence 44444544 345678999999999999999764 89999999998753
No 123
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=94.59 E-value=0.034 Score=59.58 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +++.|.|||+....
T Consensus 101 ~~~qi~~al-~~LH~~~ivH~dlkp~Nill~~~--~~~kL~Dfg~a~~~ 146 (316)
T cd05592 101 YAAEIICGL-QFLHKKGIIYRDLKLDNVLLDKD--GHIKIADFGMCKEN 146 (316)
T ss_pred HHHHHHHHH-HHHHHCCEEeCCCCHHHeEECCC--CCEEEccCcCCeEC
Confidence 445555543 45678999999999999999865 89999999998754
No 124
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.58 E-value=0.04 Score=60.52 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+ ++.+...|++|+|.+|.||+++.+ |.+.|.|||+...+..
T Consensus 147 ~~~qi~~a-L~~LH~~~ivHrDLkp~NIll~~~--~~ikL~DfG~a~~~~~ 194 (371)
T cd05622 147 YTAEVVLA-LDAIHSMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNK 194 (371)
T ss_pred HHHHHHHH-HHHHHHCCEEeCCCCHHHEEECCC--CCEEEEeCCceeEcCc
Confidence 34444444 456779999999999999999864 8999999999887754
No 125
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=94.57 E-value=0.036 Score=60.50 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ |.+.|.|||++..+...
T Consensus 106 ~~~qi~~aL-~~lH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~~ 154 (364)
T cd05599 106 YIAETILAI-DSIHKLGYIHRDIKPDNLLLDAK--GHIKLSDFGLCTGLKKS 154 (364)
T ss_pred HHHHHHHHH-HHHHHCCeEeccCCHHHeEECCC--CCEEEeecccceecccc
Confidence 344444433 45578999999999999999865 89999999998776543
No 126
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=94.57 E-value=0.041 Score=57.50 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||++..+ +++.|.|||+...++.
T Consensus 113 ~~~~l~~aL-~~LH~~~i~H~dlkp~nili~~~--~~~~l~dfg~~~~~~~ 160 (284)
T cd05081 113 YASQICKGM-EYLGSKRYVHRDLATRNILVESE--NRVKIGDFGLTKVLPQ 160 (284)
T ss_pred HHHHHHHHH-HHHHHCCceeccCCHhhEEECCC--CeEEECCCcccccccC
Confidence 344444433 45578999999999999999765 7899999999987754
No 127
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=94.55 E-value=0.035 Score=59.04 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+ +..+...|++|+|.+|.||+++.+ +.+.|.|||+.....
T Consensus 109 ~~~qi~~a-L~~lH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~~~ 155 (309)
T cd07872 109 FLYQILRG-LAYCHRRKVLHRDLKPQNLLINER--GELKLADFGLARAKS 155 (309)
T ss_pred HHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEECccccceecC
Confidence 44455554 355678999999999999999864 899999999986543
No 128
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=94.47 E-value=0.039 Score=60.66 Aligned_cols=48 Identities=29% Similarity=0.406 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+ +..+...|++|+|.+|.||+++.+ |.+.|.|||+...+..
T Consensus 147 ~~~qil~a-L~~LH~~~IvHrDLKp~NILl~~~--~~~kL~DFG~a~~~~~ 194 (370)
T cd05621 147 YTAEVVLA-LDAIHSMGLIHRDVKPDNMLLDKH--GHLKLADFGTCMKMDE 194 (370)
T ss_pred HHHHHHHH-HHHHHHCCeEecCCCHHHEEECCC--CCEEEEecccceeccc
Confidence 44445444 355678999999999999999865 8999999999887653
No 129
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=94.45 E-value=0.053 Score=55.66 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..++..++.+. ..+...|++|+|.+|.||++..+ +++.|.|||....++..
T Consensus 105 ~~~~~qi~~~l-~~lh~~~i~H~di~p~Nili~~~--~~~~l~d~g~~~~~~~~ 155 (256)
T cd05039 105 LGFALDVCEGM-EYLEEKNFVHRDLAARNVLVSED--LVAKVSDFGLAKEASQG 155 (256)
T ss_pred HHHHHHHHHHH-HHHHhCCccchhcccceEEEeCC--CCEEEcccccccccccc
Confidence 34455555554 45678999999999999999764 89999999999887543
No 130
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=94.44 E-value=0.047 Score=58.87 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=33.3
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..+...|++|+|.+|.||++..+ |++.|.|||+...+..
T Consensus 116 ~~lH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~~~~ 154 (331)
T cd05597 116 DSVHQLGYVHRDIKPDNVLLDKN--GHIRLADFGSCLRLLA 154 (331)
T ss_pred HHHHhCCeEECCCCHHHEEECCC--CCEEEEECCceeecCC
Confidence 45678999999999999999764 8999999999876643
No 131
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.033 Score=58.97 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=40.9
Q ss_pred HHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 27 TRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 27 ~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
+++|..||| ..|..|.|.+|-|++|+++ +|.+=+=|||..+.|.....
T Consensus 127 iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~-tg~LKicDFGSAK~L~~~ep 181 (364)
T KOG0658|consen 127 IKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPD-TGVLKICDFGSAKVLVKGEP 181 (364)
T ss_pred eHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCC-CCeEEeccCCcceeeccCCC
Confidence 456666666 6899999999999999987 79999999999999977654
No 132
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=94.39 E-value=0.044 Score=58.86 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++++. .-+...|++|+|.+|.||+++.+ |.+.|.|||++..
T Consensus 106 ~~~qi~~al-~~lH~~~ivH~dlkp~Nill~~~--~~~kL~Dfg~~~~ 150 (324)
T cd05587 106 YAAEIAIGL-FFLHSKGIIYRDLKLDNVMLDAE--GHIKIADFGMCKE 150 (324)
T ss_pred HHHHHHHHH-HHHHHCCeEecCCCHHHeEEcCC--CCEEEeecCccee
Confidence 334444433 44578999999999999999865 8999999998764
No 133
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=94.37 E-value=0.06 Score=55.01 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||++..+ +++-|+|||+.....
T Consensus 98 ~~~~~~~~l-~~lH~~~i~h~di~p~nili~~~--~~~~l~d~g~~~~~~ 144 (251)
T cd05041 98 MSLDAAAGM-EYLESKNCIHRDLAARNCLVGEN--NVLKISDFGMSREEE 144 (251)
T ss_pred HHHHHHHHH-HHHHhCCEehhhcCcceEEEcCC--CcEEEeecccccccc
Confidence 334444333 45678999999999999999764 899999999988665
No 134
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=94.37 E-value=0.044 Score=58.07 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+ +.-+...|++|+|.+|.||++..+ |++.|.|||++....
T Consensus 108 ~~~qi~~a-l~~lH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~~~ 154 (303)
T cd07869 108 FLFQLLRG-LSYIHQRYILHRDLKPQNLLISDT--GELKLADFGLARAKS 154 (303)
T ss_pred HHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEECCCCcceecc
Confidence 33344443 344568999999999999999764 899999999986543
No 135
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=94.36 E-value=0.047 Score=56.01 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +++.+.|||....+...
T Consensus 105 ~~~~i~~al-~~lH~~~i~H~dl~p~nili~~~--~~~~l~dfg~~~~~~~~ 153 (255)
T cd08219 105 WFVQMCLGV-QHIHEKRVLHRDIKSKNIFLTQN--GKVKLGDFGSARLLTSP 153 (255)
T ss_pred HHHHHHHHH-HHHhhCCcccCCCCcceEEECCC--CcEEEcccCcceeeccc
Confidence 344455433 56678999999999999999764 89999999998877543
No 136
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=94.35 E-value=0.029 Score=59.94 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.8
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++.|+|.|++|+++..+ +..++|||+.+..=+.
T Consensus 186 ~~~l~HgD~~~~Nvl~~~~--~~~~vIDfd~~~~~~~ 220 (307)
T TIGR00938 186 PRGVIHADLFPDNVLFDGD--SVKGVIDFYFACTDAR 220 (307)
T ss_pred CCccCCCCCCcCcEEEECC--ceEEEeecccccCcch
Confidence 4799999999999999864 4468999999875443
No 137
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=94.35 E-value=0.058 Score=56.26 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.-+...|++|+|.+|+||++..+ +++.+.|||+...+...
T Consensus 115 ~~lh~~~ivH~dl~p~Nil~~~~--~~~~l~dfg~~~~~~~~ 154 (277)
T cd06640 115 DYLHSEKKIHRDIKAANVLLSEQ--GDVKLADFGVAGQLTDT 154 (277)
T ss_pred HHHHhCCccCcCCChhhEEEcCC--CCEEEcccccceeccCC
Confidence 45568899999999999999864 79999999999877653
No 138
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=94.35 E-value=0.057 Score=57.99 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=29.7
Q ss_pred HHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 33 QIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 33 qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.+.. .|++|+|.+|.||+++.+ |.+.|.|||++..
T Consensus 110 ~lH~~~~ivHrDikp~NIll~~~--~~~kL~Dfg~~~~ 145 (325)
T cd05594 110 YLHSEKNVVYRDLKLENLMLDKD--GHIKITDFGLCKE 145 (325)
T ss_pred HHHhcCCEEecCCCCCeEEECCC--CCEEEecCCCCee
Confidence 3444 699999999999999865 8999999998764
No 139
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=94.34 E-value=0.047 Score=62.23 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+ +..+...|++|+|.+|.||+++.+ +.+.|.|||+...+...
T Consensus 174 i~~qi~~a-L~~lH~~~ivHrDlkp~NIll~~~--~~~kL~DFgla~~~~~~ 222 (478)
T PTZ00267 174 LFYQIVLA-LDEVHSRKMMHRDLKSANIFLMPT--GIIKLGDFGFSKQYSDS 222 (478)
T ss_pred HHHHHHHH-HHHHHhCCEEECCcCHHhEEECCC--CcEEEEeCcCceecCCc
Confidence 33344433 355678899999999999999864 89999999999887653
No 140
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=94.34 E-value=0.056 Score=56.82 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++.++ ..+...|++|+|.+|.||+++.+ +++.|.|||+....
T Consensus 114 ~~~~ql~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~ 160 (292)
T cd06644 114 VICRQMLEAL-QYLHSMKIIHRDLKAGNVLLTLD--GDIKLADFGVSAKN 160 (292)
T ss_pred HHHHHHHHHH-HHHhcCCeeecCCCcceEEEcCC--CCEEEccCccceec
Confidence 3445555544 45578899999999999999754 89999999987654
No 141
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=94.34 E-value=0.052 Score=57.08 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++++. ..+...|++|+|.+|.||+|..+ |++.|.|||+...+...
T Consensus 106 ~~~qil~~l-~~lH~~~i~H~dl~p~nili~~~--~~~kl~dfg~~~~~~~~ 154 (290)
T cd05580 106 YAAQVVLAL-EYLHSLDIVYRDLKPENLLLDSD--GYIKITDFGFAKRVKGR 154 (290)
T ss_pred HHHHHHHHH-HHHHHCCEecCCCCHHHEEECCC--CCEEEeeCCCccccCCC
Confidence 344455544 45678999999999999999865 89999999998877654
No 142
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=94.33 E-value=0.075 Score=56.78 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|++|.||+++.+ +.+.|.|||++..++.
T Consensus 130 i~~~i~~~l-~~lH~~~i~H~dL~p~Nil~~~~--~~~kl~dfg~~~~~~~ 177 (317)
T cd06635 130 ITHGALQGL-AYLHSHNMIHRDIKAGNILLTEP--GQVKLADFGSASIASP 177 (317)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCCcccEEECCC--CCEEEecCCCccccCC
Confidence 344444433 45578999999999999999764 8999999999876654
No 143
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=94.32 E-value=0.059 Score=55.52 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.+++..++++. .-+...|++|+|.+|+||++..+ +++.|.|||+...+.
T Consensus 103 ~~~~~~i~~~l-~~lH~~~i~H~dl~p~nili~~~--~~~kl~d~g~~~~~~ 151 (256)
T cd05113 103 LEMCKDVCEGM-AYLESKQFIHRDLAARNCLVDDQ--GCVKVSDFGLSRYVL 151 (256)
T ss_pred HHHHHHHHHHH-HHHHhCCeeccccCcceEEEcCC--CCEEECCCccceecC
Confidence 34555555555 44578899999999999999764 799999999987663
No 144
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=94.32 E-value=0.049 Score=58.66 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=29.6
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.|++|+|.+|.||+++.+ +.+.|.|||+.+.+.+
T Consensus 123 ~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~ 156 (331)
T cd06649 123 HQIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLID 156 (331)
T ss_pred CCEEcCCCChhhEEEcCC--CcEEEccCcccccccc
Confidence 469999999999999865 8999999999877654
No 145
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=94.31 E-value=0.039 Score=58.68 Aligned_cols=50 Identities=38% Similarity=0.573 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+-+.+++.|.+||+ ..|++|+|.+|.||++.+. +|.+-|=|||+.+.+..
T Consensus 114 l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~-~~~~KlaDFG~a~~~~~ 170 (313)
T KOG0198|consen 114 LPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPS-NGDVKLADFGLAKKLES 170 (313)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCC-CCeEEeccCcccccccc
Confidence 44555555555554 7799999999999999863 47999999999988874
No 146
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=94.29 E-value=0.047 Score=60.12 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=34.4
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+..+...|++|+|.+|.||+++.+ |++.|.|||++..+...
T Consensus 114 L~~LH~~givHrDlKp~Nili~~~--~~~kL~DFGl~~~~~~~ 154 (381)
T cd05626 114 IESVHKMGFIHRDIKPDNILIDLD--GHIKLTDFGLCTGFRWT 154 (381)
T ss_pred HHHHHhCCeeecCCcHHHEEECCC--CCEEEeeCcCCcccccc
Confidence 456678999999999999999764 89999999998766433
No 147
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=94.29 E-value=0.056 Score=56.38 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||++..+ +++.|.|||....++.
T Consensus 114 ~~~qi~~~L-~~lH~~~iiH~dlkp~Nil~~~~--~~~kL~dfG~~~~~~~ 161 (279)
T cd05109 114 WCVQIAKGM-SYLEEVRLVHRDLAARNVLVKSP--NHVKITDFGLARLLDI 161 (279)
T ss_pred HHHHHHHHH-HHHHHCCeeccccccceEEEcCC--CcEEECCCCceeeccc
Confidence 344444433 34468899999999999999754 7899999999887754
No 148
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=94.26 E-value=0.047 Score=58.70 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..+++++ .-+...|++|+|.+|.||++..+ +++.|.|||+....
T Consensus 101 ~~~qil~al-~~LH~~~ivHrDlkp~Nili~~~--~~~kl~Dfg~a~~~ 146 (330)
T cd05586 101 YIAELVLAL-EHLHKYDIVYRDLKPENILLDAT--GHIALCDFGLSKAN 146 (330)
T ss_pred HHHHHHHHH-HHHHHCCeEeccCCHHHeEECCC--CCEEEecCCcCcCC
Confidence 344444443 44578999999999999999864 89999999987653
No 149
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=94.25 E-value=0.057 Score=56.26 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 124 ~~~~l~~~l-~~lH~~~~vH~dlkp~Nil~~~~--~~~~l~dfg~~~~~~ 170 (277)
T cd05062 124 MAGEIADGM-AYLNANKFVHRDLAARNCMVAED--FTVKIGDFGMTRDIY 170 (277)
T ss_pred HHHHHHHHH-HHHHHCCcccCCcchheEEEcCC--CCEEECCCCCccccC
Confidence 344455444 45678899999999999999864 899999999987654
No 150
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=94.25 E-value=0.056 Score=55.69 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. ..+...|++|+|.+|+|+++..+ +.+.|.|||....+..
T Consensus 105 ~~~~~~l~~al-~~lH~~~i~H~dl~~~Nill~~~--~~~~l~dfg~~~~~~~ 154 (260)
T cd05069 105 VDMAAQIADGM-AYIERMNYIHRDLRAANILVGDN--LVCKIADFGLARLIED 154 (260)
T ss_pred HHHHHHHHHHH-HHHHhCCEeecccCcceEEEcCC--CeEEECCCccceEccC
Confidence 44566666655 45589999999999999999864 7899999999877643
No 151
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=94.23 E-value=0.06 Score=55.67 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.++ ..+...|++|+|.+|.||+++.+ +.+.+.|||+...+...
T Consensus 111 ~~~~~l~~al-~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~~~~ 160 (268)
T cd05063 111 GMLRGIAAGM-KYLSDMNYVHRDLAARNILVNSN--LECKVSDFGLSRVLEDD 160 (268)
T ss_pred HHHHHHHHHH-HHHHHCCeeccccchhhEEEcCC--CcEEECCCccceecccc
Confidence 3444444444 55678999999999999999864 78999999998877543
No 152
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=94.22 E-value=0.055 Score=55.26 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.++ ..+...|++|+|.+|.||++..+ +.+.|.|||++......
T Consensus 108 ~~~ql~~~l-~~lh~~~~~h~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~ 156 (258)
T smart00219 108 FALQIARGM-EYLESKNFIHRDLAARNCLVGEN--LVVKISDFGLSRDLYDD 156 (258)
T ss_pred HHHHHHHHH-HHHhcCCeeecccccceEEEccC--CeEEEcccCCceecccc
Confidence 444454443 45678899999999999999764 78999999999887765
No 153
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=94.21 E-value=0.044 Score=58.80 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++..++++. .-+...|++|+|.+|.||+++.+ +++.|.|||+...+....
T Consensus 107 ~i~~~l~~~l-~~LH~~gi~H~dlkp~nili~~~--~~~~L~dfg~~~~~~~~~ 157 (330)
T cd07834 107 YFLYQILRGL-KYLHSANVIHRDLKPSNILVNSN--CDLKICDFGLARGVDPDE 157 (330)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEcccCceEeecccc
Confidence 3555555555 45678999999999999999865 899999999999887654
No 154
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=94.21 E-value=0.043 Score=59.07 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++.++ ..+...|++|+|.+|.||+++.+ +.+.|.|||+++.
T Consensus 101 ~~~qi~~~l-~~lH~~~ivH~dlkp~Nili~~~--~~~kL~Dfg~~~~ 145 (329)
T cd05588 101 YSAEISLAL-NFLHERGIIYRDLKLDNVLLDAE--GHIKLTDYGMCKE 145 (329)
T ss_pred HHHHHHHHH-HHHHHCCeEecCCCHHHeEECCC--CCEEECcCccccc
Confidence 344444433 55678999999999999999864 8999999998764
No 155
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=94.19 E-value=0.048 Score=58.71 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++.++ .-+...|++|+|.+|.||+++.+ +.+.|.|||++..
T Consensus 100 ~~~~qi~~al-~~lH~~~ivHrDlkp~Nili~~~--~~~kl~Dfg~~~~ 145 (327)
T cd05617 100 FYAAEICIAL-NFLHERGIIYRDLKLDNVLLDAD--GHIKLTDYGMCKE 145 (327)
T ss_pred HHHHHHHHHH-HHHHHCCeeccCCCHHHEEEeCC--CCEEEecccccee
Confidence 3455555543 45678999999999999999865 8999999998764
No 156
>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=94.18 E-value=0.065 Score=54.73 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
..++..++.+. ..+...|++|+|..|.||++..+ +.+.|.|||+...+....
T Consensus 108 ~~~~~~l~~al-~~lH~~~i~H~di~p~nili~~~--~~~~l~dfg~~~~~~~~~ 159 (262)
T cd00192 108 LSFAIQIAKGM-EYLASKKFVHRDLAARNCLVGED--LVVKISDFGLSRDVYDDD 159 (262)
T ss_pred HHHHHHHHHHH-HHHHcCCcccCccCcceEEECCC--CcEEEccccccccccccc
Confidence 34455555544 56788999999999999999865 899999999999887643
No 157
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=94.18 E-value=0.058 Score=55.57 Aligned_cols=49 Identities=16% Similarity=0.343 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||+...+..
T Consensus 107 ~~~~~i~~~l-~~lH~~~i~H~dl~p~Nil~~~~--~~~~l~dfg~~~~~~~ 155 (261)
T cd05068 107 DMAAQVASGM-AYLEAQNYIHRDLAARNVLVGEN--NICKVADFGLARVIKE 155 (261)
T ss_pred HHHHHHHHHH-HHHHhCCeeeccCCcceEEEcCC--CCEEECCcceEEEccC
Confidence 3444444443 56678999999999999999865 7899999999988763
No 158
>PF13354 Beta-lactamase2: Beta-lactamase enzyme family; PDB: 1G6A_A 1G68_A 3NIA_A 3NI9_B 1BUL_A 1BUE_A 4EUZ_A 4EV4_A 4EQI_A 1O7E_B ....
Probab=94.18 E-value=0.11 Score=51.53 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=27.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
+.|..|..||+-|.+.+ ..+++|+++||++|.
T Consensus 10 n~d~~~~~AS~~Kl~i~----~~v~~g~~~l~~~v~ 41 (197)
T PF13354_consen 10 NADEPFPAASTIKLPIA----EAVDEGKLSLDERVT 41 (197)
T ss_dssp STTSEEE-GGGGHHHHH----HHHHHTSTGTTSEEE
T ss_pred CCCCcEechhHHHHHHH----HHHHhcCccccceeE
Confidence 78889999999999976 778889999999886
No 159
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=94.17 E-value=0.08 Score=54.11 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|+.|+|.+|.||+++.+ +++.|.|||+...+..
T Consensus 106 i~~~l~~al-~~lH~~~i~h~dl~~~nili~~~--~~~~l~df~~~~~~~~ 153 (256)
T cd08529 106 FFIQILLGL-AHLHSKKILHRDIKSLNLFLDAY--DNVKIGDLGVAKLLSD 153 (256)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCCcceEEEeCC--CCEEEcccccceeccC
Confidence 444455444 45578999999999999999865 7999999999988764
No 160
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=94.15 E-value=0.047 Score=58.60 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ |.+.|.|||++...
T Consensus 106 ~~~qi~~al-~~lH~~~ivHrdlkp~Nill~~~--~~~kL~Dfg~~~~~ 151 (324)
T cd05589 106 YAACVVLGL-QYLHENKIVYRDLKLDNLLLDTE--GFVKIADFGLCKEG 151 (324)
T ss_pred HHHHHHHHH-HHHHhCCeEecCCCHHHeEECCC--CcEEeCcccCCccC
Confidence 445555444 45678999999999999999865 89999999987653
No 161
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=94.15 E-value=0.048 Score=58.50 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||++...
T Consensus 106 ~~~qi~~aL-~~LH~~~ivHrDlkp~Nill~~~--~~~kL~DfG~~~~~ 151 (323)
T cd05616 106 YAAEIAIGL-FFLHSKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKEN 151 (323)
T ss_pred HHHHHHHHH-HHHHHCCEEecCCCHHHeEECCC--CcEEEccCCCceec
Confidence 444455444 44578999999999999999865 89999999988754
No 162
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=94.15 E-value=0.053 Score=56.92 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. ..+...|++|+|.+|.||+++.+ +++.|.|||+...+..
T Consensus 119 ~~~~ql~~~l-~~lH~~~i~H~dl~p~Nil~~~~--~~~~l~d~g~~~~~~~ 167 (285)
T cd06648 119 TVCLAVLKAL-SFLHAQGVIHRDIKSDSILLTSD--GRVKLSDFGFCAQVSK 167 (285)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCChhhEEEcCC--CcEEEcccccchhhcc
Confidence 3555555554 56678999999999999999864 8999999998776543
No 163
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=94.14 E-value=0.063 Score=55.85 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. .-+...|+.|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 113 ~~~~~l~~aL-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~ 161 (284)
T cd05038 113 LFSSQICKGM-DYLGSQRYIHRDLAARNILVESE--DLVKISDFGLAKVLPE 161 (284)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCCHHhEEEcCC--CCEEEccccccccccc
Confidence 3444555544 44578999999999999999865 8999999999998873
No 164
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=94.13 E-value=0.055 Score=57.86 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. ..+...|++|+|.+|.||+++.+ +.+.|.|||+.....
T Consensus 103 ~~~qi~~~l-~~lH~~~i~H~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~ 149 (318)
T cd05582 103 YLAELALAL-DHLHSLGIIYRDLKPENILLDEE--GHIKLTDFGLSKESI 149 (318)
T ss_pred HHHHHHHHH-HHHHHCCEecCCCCHHHeEECCC--CcEEEeeccCCcccC
Confidence 444444444 45678999999999999999864 899999999877654
No 165
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=94.13 E-value=0.042 Score=59.00 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||++..
T Consensus 99 ~~~~qi~~aL-~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~Dfg~~~~ 144 (323)
T cd05595 99 FYGAEIVSAL-EYLHSRDVVYRDIKLENLMLDKD--GHIKITDFGLCKE 144 (323)
T ss_pred HHHHHHHHHH-HHHHHCCeEecCCCHHHEEEcCC--CCEEecccHHhcc
Confidence 3444555544 44578999999999999999864 8999999998765
No 166
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=94.12 E-value=0.041 Score=58.33 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=32.6
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
+.-+...|.+|+|.+|-|||++.+ |.|.|=|||+++.
T Consensus 138 L~~LH~~gIiyRDlKPENILLd~~--GHi~LtDFgL~k~ 174 (357)
T KOG0598|consen 138 LGYLHSKGIIYRDLKPENILLDEQ--GHIKLTDFGLCKE 174 (357)
T ss_pred HHHHHhCCeeeccCCHHHeeecCC--CcEEEeccccchh
Confidence 344568999999999999999875 8999999999993
No 167
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=94.12 E-value=0.063 Score=58.54 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=32.5
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
+.-+...|++|+|.+|.||++..+ |.+.|.|||+....
T Consensus 136 L~~LH~~~ivHrDlkp~NIl~~~~--~~~kl~Dfg~a~~~ 173 (359)
T cd07876 136 IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTA 173 (359)
T ss_pred HHHHHhCCcccCCCCHHHEEECCC--CCEEEecCCCcccc
Confidence 345678999999999999999864 89999999998654
No 168
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=94.12 E-value=0.053 Score=55.99 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. ..+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 110 ~~~~~l~~~l-~~lH~~~ivH~di~p~nil~~~~--~~~~l~dfg~~~~~~~ 158 (267)
T cd06628 110 NFVRQILKGL-NYLHNRGIIHRDIKGANILVDNK--GGIKISDFGISKKLEA 158 (267)
T ss_pred HHHHHHHHHH-HHHHhcCcccccCCHHHEEEcCC--CCEEecccCCCccccc
Confidence 4455555544 45578999999999999999754 8999999999988764
No 169
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=94.10 E-value=0.05 Score=56.32 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.||.||++..+ +.+.|.|||+...+..
T Consensus 116 ~~~qi~~~l-~~LH~~~ivh~dl~~~nili~~~--~~~~l~Dfg~~~~~~~ 163 (272)
T cd06637 116 ICREILRGL-SHLHQHKVIHRDIKGQNVLLTEN--AEVKLVDFGVSAQLDR 163 (272)
T ss_pred HHHHHHHHH-HHHHHCCCccCCCCHHHEEECCC--CCEEEccCCCceeccc
Confidence 444455443 45678999999999999999865 7899999999887654
No 170
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.10 E-value=0.052 Score=57.45 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +++.|.|||++..+...
T Consensus 120 i~~~l~~al-~~LH~~~i~H~dL~p~Nili~~~--~~~kl~dfg~~~~~~~~ 168 (296)
T cd06655 120 VCRECLQAL-EFLHANQVIHRDIKSDNVLLGMD--GSVKLTDFGFCAQITPE 168 (296)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEccCccchhcccc
Confidence 344444433 45678899999999999999864 89999999998887654
No 171
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=94.07 E-value=0.067 Score=56.17 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
..++..++.+. ..+...|++|+|.+|.||+++.+ +++.|.|||+....
T Consensus 106 ~~~~~qi~~~L-~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~Dfg~~~~~ 153 (291)
T cd07870 106 RLFMFQLLRGL-AYIHGQHILHRDLKPQNLLISYL--GELKLADFGLARAK 153 (291)
T ss_pred HHHHHHHHHHH-HHHHhCCcccCCCChHHEEEcCC--CcEEEecccccccc
Confidence 33455555554 45578999999999999999865 89999999988654
No 172
>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]
Probab=94.06 E-value=0.034 Score=59.22 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.0
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALA 79 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~ 79 (729)
...++|+|-|+||+++.++ +.+++|||++.+-=++..=.++.
T Consensus 197 ~~~lvHGD~~~gNlii~~~--~~~gVlDwe~~~lGDP~~Dl~~~ 238 (321)
T COG3173 197 PPVLVHGDYRPGNLIIDPG--RPTGVLDWELATLGDPLEDLAII 238 (321)
T ss_pred CceeeeCCcccCCEEEeCC--CeeEEEeccccccCCcHHHHHHH
Confidence 3578999999999999875 56999999999887776544443
No 173
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=94.06 E-value=0.059 Score=54.90 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+...|++|+|.+|.|+++..+ +.+.|.|||+...+...
T Consensus 108 i~~~i~~~l-~~lh~~~~~H~dl~~~nil~~~~--~~~~l~d~~~~~~~~~~ 156 (258)
T cd08215 108 WFVQLCLAL-KYLHSRKILHRDIKPQNIFLTSN--GLVKLGDFGISKVLSST 156 (258)
T ss_pred HHHHHHHHH-HHHHhCCEecccCChHHeEEcCC--CcEEECCccceeecccC
Confidence 444444443 56678899999999999999864 89999999999876554
No 174
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=94.05 E-value=0.057 Score=58.00 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++.+ +.-+...|++|+|.+|.||+++.+ +.+.|.|||+....
T Consensus 105 ~i~~qi~~a-l~~lH~~~ivHrDikp~Nill~~~--~~ikL~Dfg~~~~~ 151 (323)
T cd05615 105 FYAAEISVG-LFFLHRRGIIYRDLKLDNVMLDSE--GHIKIADFGMCKEH 151 (323)
T ss_pred HHHHHHHHH-HHHHHHCCeeccCCCHHHeEECCC--CCEEEecccccccc
Confidence 344445544 355678999999999999999865 89999999987654
No 175
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=94.05 E-value=0.062 Score=55.34 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.+. ..+...|++|+|.+|.||++..+ +++.|.|||....+..
T Consensus 105 ~~~~~~l~~al-~~lH~~~i~H~di~p~Nili~~~--~~~~l~dfg~~~~~~~ 154 (260)
T cd05070 105 VDMAAQVAAGM-AYIERMNYIHRDLRSANILVGDG--LVCKIADFGLARLIED 154 (260)
T ss_pred HHHHHHHHHHH-HHHHHCCcccCCCccceEEEeCC--ceEEeCCceeeeeccC
Confidence 45566666655 45689999999999999999864 7899999999987754
No 176
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.04 E-value=0.046 Score=57.87 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+ +..+...|++|+|.+|.||+++.+ +++.+.|||....+++.
T Consensus 120 ~~~~l~~~-L~~LH~~~i~H~dL~p~Nili~~~--~~~~l~Dfg~~~~~~~~ 168 (297)
T cd06656 120 VCRECLQA-LDFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE 168 (297)
T ss_pred HHHHHHHH-HHHHHHCCcccCCCCHHHEEECCC--CCEEECcCccceEccCC
Confidence 34444443 355678899999999999999764 89999999998876554
No 177
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=93.99 E-value=0.056 Score=55.99 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. ..+...|++|.|.+|.||+++.+ +++.+.|||+.....
T Consensus 104 ~~~~qi~~~l-~~lH~~~ivH~dlkp~Nill~~~--~~~kl~dfg~~~~~~ 151 (269)
T cd05042 104 RMACEVASGL-LWLHQADFIHSDLALRNCQLTAD--LSVKIGDYGLALEQY 151 (269)
T ss_pred HHHHHHHHHH-HHHHhcCEecccccHhheEecCC--CcEEEeccccccccc
Confidence 3455555554 45678999999999999999865 899999999876543
No 178
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=93.99 E-value=0.065 Score=55.91 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..+++.. .-+...|++|+|.+|.||++..+ +++.|.|||+...++..
T Consensus 104 ~~~~ql~~~l-~~LH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~~ 153 (286)
T cd07847 104 KIIWQTLQAV-NFCHKHNCIHRDVKPENILITKQ--GQIKLCDFGFARILTGP 153 (286)
T ss_pred HHHHHHHHHH-HHHHHCCceecCCChhhEEEcCC--CcEEECccccceecCCC
Confidence 3444444433 34567899999999999999865 89999999999887653
No 179
>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=93.98 E-value=0.055 Score=56.81 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=35.2
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+..+...|++|+|.+|.||+++.+ +++.|.|||+...+...
T Consensus 118 l~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~~ 158 (290)
T cd05613 118 LEHLHKLGIIYRDIKLENILLDSN--GHVVLTDFGLSKEFHED 158 (290)
T ss_pred HHHHHhCCeeccCCCHHHeEECCC--CCEEEeeCccceecccc
Confidence 356678999999999999999865 89999999999887543
No 180
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=93.98 E-value=0.058 Score=56.44 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+..++.+ +..+...|++|+|.+|.||+++.+ +++.|.|||+...++
T Consensus 114 ~~qi~~a-l~~lH~~~ivH~dikp~Nili~~~--~~~kl~dfg~~~~~~ 159 (288)
T cd07863 114 MRQFLRG-LDFLHANCIVHRDLKPENILVTSG--GQVKLADFGLARIYS 159 (288)
T ss_pred HHHHHHH-HHHHHhCCeecCCCCHHHEEECCC--CCEEECccCcccccc
Confidence 3334333 344578899999999999999865 899999999887654
No 181
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=93.96 E-value=0.067 Score=56.18 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. +.++..|++|+|.+|.||+++.+ +++.|.|||....+..
T Consensus 133 ~~~qi~~al-~~lH~~~ivH~dlkp~nili~~~--~~~kl~dfg~~~~~~~ 180 (291)
T cd06639 133 ILYGALLGL-QHLHNNRIIHRDVKGNNILLTTE--GGVKLVDFGVSAQLTS 180 (291)
T ss_pred HHHHHHHHH-HHHHhCCeeccCCCHHHEEEcCC--CCEEEeecccchhccc
Confidence 344444433 55678999999999999999865 7899999999887754
No 182
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=93.96 E-value=0.059 Score=62.66 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++ +..+...|++|.|.+|.||+++.+ ++++.|.|||+.+.+
T Consensus 260 i~~qll~a-L~yLH~~gIiHRDLKP~NILl~~~-~~~~KL~DFGlA~~l 306 (566)
T PLN03225 260 IMRQILFA-LDGLHSTGIVHRDVKPQNIIFSEG-SGSFKIIDLGAAADL 306 (566)
T ss_pred HHHHHHHH-HHHHHHCCEEeCcCCHHHEEEeCC-CCcEEEEeCCCcccc
Confidence 33444443 345568899999999999999864 478999999998754
No 183
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=93.95 E-value=0.065 Score=56.08 Aligned_cols=48 Identities=27% Similarity=0.447 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...++.
T Consensus 105 ~~~qi~~~L-~~lH~~~i~H~dlkp~Nill~~~--~~~kl~Dfg~~~~~~~ 152 (287)
T cd07848 105 YIYQLIKAI-HWCHKNDIVHRDIKPENLLISHN--DVLKLCDFGFARNLSE 152 (287)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CcEEEeeccCcccccc
Confidence 444444433 34468999999999999999764 8999999999987754
No 184
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=93.94 E-value=0.072 Score=55.18 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|.+|.||++.. ++++.|.|||....+..
T Consensus 110 ~i~~~l~~al-~~lH~~g~~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~ 158 (269)
T cd05065 110 GMLRGIAAGM-KYLSEMNYVHRDLAARNILVNS--NLVCKVSDFGLSRFLED 158 (269)
T ss_pred HHHHHHHHHH-HHHHHCCEeecccChheEEEcC--CCcEEECCCcccccccc
Confidence 3444555544 4557899999999999999975 47899999998776643
No 185
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=93.93 E-value=0.062 Score=56.03 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+...
T Consensus 102 ~~~~~~i~~~l-~~lH~~~i~H~dl~p~ni~~~~~--~~~~l~dfg~~~~~~~~ 152 (286)
T cd07832 102 KSYMRMLLKGV-AYMHANGIMHRDLKPANLLISAD--GVLKIADFGLARLFSEE 152 (286)
T ss_pred HHHHHHHHHHH-HHHHHCCeecCCcCHHHEEEcCC--CcEEEeeeeecccccCC
Confidence 34455555554 45578999999999999999864 88999999999877654
No 186
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.93 E-value=0.065 Score=57.13 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +++.|.|||..+.+..
T Consensus 139 ~~~qi~~aL-~~lH~~gi~H~dlkp~Nill~~~--~~~kL~Dfg~~~~~~~ 186 (314)
T cd05099 139 CAYQVARGM-EYLESRRCIHRDLAARNVLVTED--NVMKIADFGLARGVHD 186 (314)
T ss_pred HHHHHHHHH-HHHHHCCeeeccccceeEEEcCC--CcEEEccccccccccc
Confidence 455555554 45578999999999999999864 8999999999987754
No 187
>PHA03211 serine/threonine kinase US3; Provisional
Probab=93.92 E-value=0.057 Score=61.18 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++ +..+...|++|+|.+|.||++..+ +++.|.|||+...+.
T Consensus 264 ~i~~qi~~a-L~yLH~~gIvHrDLKP~NILl~~~--~~vkL~DFGla~~~~ 311 (461)
T PHA03211 264 AVARQLLSA-IDYIHGEGIIHRDIKTENVLVNGP--EDICLGDFGAACFAR 311 (461)
T ss_pred HHHHHHHHH-HHHHHHCCEEECcCCHHHEEECCC--CCEEEcccCCceecc
Confidence 344444443 345678999999999999999764 899999999987654
No 188
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=93.91 E-value=0.074 Score=54.69 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.+. ..+...|++|+|.+|.||++..+ +.+.|.|||....+..
T Consensus 106 ~~~~~~i~~al-~~lh~~~i~h~di~p~nili~~~--~~~~l~d~g~~~~~~~ 155 (261)
T cd05034 106 VDMAAQIAEGM-AYLESRNYIHRDLAARNILVGEN--LVCKIADFGLARLIED 155 (261)
T ss_pred HHHHHHHHHHH-HHHHhCCcccCCcchheEEEcCC--CCEEECccccceeccc
Confidence 34555555554 55679999999999999999875 8999999999988764
No 189
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=93.90 E-value=0.07 Score=54.93 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +++.|.|||+...++.
T Consensus 111 ~~~~l~~~l-~~lh~~~i~h~dl~p~nil~~~~--~~~~l~d~~~~~~~~~ 158 (267)
T cd08224 111 YFVQLCSAL-EHMHSKRIMHRDIKPANVFITAT--GVVKLGDLGLGRFFSS 158 (267)
T ss_pred HHHHHHHHH-HHHHhCCEecCCcChhhEEECCC--CcEEEeccceeeeccC
Confidence 344444444 45578999999999999999865 8999999999887654
No 190
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=93.90 E-value=0.066 Score=58.04 Aligned_cols=49 Identities=31% Similarity=0.522 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..+++++ ..+...|++|+|.+|.||+++.+ +++.|+|||+...+..
T Consensus 122 ~i~~qi~~al-~~LH~~gi~H~dlkp~Nill~~~--~~~kl~dfg~~~~~~~ 170 (343)
T cd07880 122 FLVYQMLKGL-KYIHAAGIIHRDLKPGNLAVNED--CELKILDFGLARQTDS 170 (343)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEeeccccccccc
Confidence 3445555544 45678999999999999999864 8999999999886653
No 191
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=93.89 E-value=0.064 Score=58.91 Aligned_cols=47 Identities=32% Similarity=0.465 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+ +..+...|++|+|.+|.||+++.+ |.+.|.|||+...+..
T Consensus 148 ~~qi~~a-L~~LH~~~ivHrDLkp~NILl~~~--~~~kL~DfG~~~~~~~ 194 (370)
T cd05596 148 TAEVVLA-LDAIHSMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMDA 194 (370)
T ss_pred HHHHHHH-HHHHHHCCeeccCCCHHHEEEcCC--CCEEEEeccceeeccC
Confidence 3444443 456678999999999999999864 8999999999876643
No 192
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=93.89 E-value=0.11 Score=56.34 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++++. ..+...|++|+|.+|.||+++.+ +++.|.|||+....+.
T Consensus 123 ~~qi~~aL-~~LH~~~i~H~dlkp~NIll~~~--~~~kL~dfg~~~~~~~ 169 (342)
T cd07879 123 VYQMLCGL-KYIHSAGIIHRDLKPGNLAVNED--CELKILDFGLARHADA 169 (342)
T ss_pred HHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEeeCCCCcCCCC
Confidence 33344333 45578899999999999999865 8999999999876543
No 193
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=93.89 E-value=0.071 Score=54.85 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.+++..++.+. +.+...|++|+|.+|.||++..+ +.+-|.|||+...+...
T Consensus 98 ~~i~~qi~~al-~~lH~~~i~H~dlkp~nill~~~--~~~kl~Dfg~~~~~~~~ 148 (257)
T cd05116 98 TELVHQVSMGM-KYLEETNFVHRDLAARNVLLVTQ--HYAKISDFGLSKALGAD 148 (257)
T ss_pred HHHHHHHHHHH-HHHHHCCEeecccchhhEEEcCC--CeEEECCCccccccCCC
Confidence 34455555544 56689999999999999999864 78999999998776533
No 194
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=93.88 E-value=0.09 Score=53.95 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|..|.||+++.+ +.+.|.|||....+..
T Consensus 106 ~~~ql~~~l-~~lh~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~ 153 (262)
T cd06613 106 VCRETLKGL-AYLHETGKIHRDIKGANILLTED--GDVKLADFGVSAQLTA 153 (262)
T ss_pred HHHHHHHHH-HHHHhCCceecCCChhhEEECCC--CCEEECccccchhhhh
Confidence 444455444 34568999999999999999864 8999999999877654
No 195
>PRK06148 hypothetical protein; Provisional
Probab=93.85 E-value=0.14 Score=63.65 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHH------HHcCccccCCCCCCeEEecCCCCCe-EEEecccccccC
Q 004807 19 KQKVVEEITRAYAHQI------YVDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLS 71 (729)
Q Consensus 19 ~~~la~~l~~~~~~qi------f~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~ 71 (729)
.+++.+.+++.|.+.+ +..+++|+|.|+.||+|+.+.+++| ++||||-+..=+
T Consensus 179 ~r~~l~~~~~~~~~~v~p~l~~Lp~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~~~ 238 (1013)
T PRK06148 179 DRALVERFLARFERNVAPRLAALPAQVIHNDANDYNILVDADDGERISGLIDFGDAVHAP 238 (1013)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceECCCCCcccEEEcCCCCcceEEEEECccccccc
Confidence 3455556666554422 3578999999999999987633366 599999998753
No 196
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=93.85 E-value=0.043 Score=55.95 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=28.3
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++.|+|+||+||+++.+ ++.+.||||=.++.=++
T Consensus 170 ~~l~H~Dl~~~Nil~~~~-~~~~~lIDwe~a~~~~~ 204 (235)
T cd05157 170 IVFCHNDLLSGNIIYNEE-KNSVKFIDYEYAGYNYR 204 (235)
T ss_pred EEEEcCCCCcCcEEEeCC-CCCEEEEEcccCCcCch
Confidence 579999999999999862 36899999988774433
No 197
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=93.84 E-value=0.064 Score=56.55 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+ +..+...|++|+|.+|.||+++.+ |++.|.|||+...+..
T Consensus 106 ~~~qi~~~-l~~lH~~~i~H~dlkp~NIli~~~--~~~kl~Dfg~~~~~~~ 153 (291)
T cd05612 106 YASEIVCA-LEYLHSKEIVYRDLKPENILLDKE--GHIKLTDFGFAKKLRD 153 (291)
T ss_pred HHHHHHHH-HHHHHHCCeeecCCCHHHeEECCC--CCEEEEecCcchhccC
Confidence 34444443 345678999999999999999764 8999999999876643
No 198
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=93.83 E-value=0.076 Score=56.52 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.++ .-+...|++|+|.+|.||++..+ +.+.|.|||+....+.
T Consensus 108 ~~~qi~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~~ 155 (316)
T cd05574 108 YAAEVLLAL-EYLHLLGIVYRDLKPENILLHES--GHIMLSDFDLSKQSDV 155 (316)
T ss_pred HHHHHHHHH-HHHHHCCeeccCCChHHeEEcCC--CCEEEeecchhhcccc
Confidence 344444444 34578999999999999999864 8999999999887654
No 199
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=93.82 E-value=0.056 Score=57.24 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.++ .-+...|++|+|.+|+||+++.+ +.+.|.|||+...+..
T Consensus 120 ~~~~~qi~~~L-~~LH~~~ivH~dl~p~Nill~~~--~~~kL~dfg~~~~~~~ 169 (297)
T cd06659 120 ATVCESVLQAL-CYLHSQGVIHRDIKSDSILLTLD--GRVKLSDFGFCAQISK 169 (297)
T ss_pred HHHHHHHHHHH-HHHHhCCeecCCCCHHHeEEccC--CcEEEeechhHhhccc
Confidence 33455555543 45678899999999999999865 8999999998876554
No 200
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=93.82 E-value=0.074 Score=54.62 Aligned_cols=48 Identities=33% Similarity=0.444 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+. .-+...|++|+|.+|.||+++.+ +++.|.|||+...+.
T Consensus 106 ~~~~~i~~~l-~~lH~~~i~H~dlkp~nil~~~~--~~~kl~dfg~~~~~~ 153 (256)
T cd05082 106 KFSLDVCEAM-EYLEANNFVHRDLAARNVLVSED--NVAKVSDFGLTKEAS 153 (256)
T ss_pred HHHHHHHHHH-HHHHhCCEeccccchheEEEcCC--CcEEecCCccceecc
Confidence 3444555443 55678999999999999999864 899999999887654
No 201
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=93.81 E-value=0.084 Score=56.32 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 114 ~~~qi~~~L-~~LH~~~iiH~dlkp~Nill~~~--~~~kl~DfG~a~~~~~ 161 (316)
T cd05108 114 WCVQIAKGM-NYLEERRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLGA 161 (316)
T ss_pred HHHHHHHHH-HHHHhcCeeccccchhheEecCC--CcEEEccccccccccC
Confidence 344444443 55678999999999999999864 7899999999987754
No 202
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.79 E-value=0.071 Score=58.26 Aligned_cols=47 Identities=23% Similarity=0.447 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++ +..+...|++|+|.+|.||++..+ +.+.|.|||+.....
T Consensus 131 ~~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~DfG~a~~~~ 177 (364)
T cd07875 131 LLYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAG 177 (364)
T ss_pred HHHHHHHH-HHHHhhCCeecCCCCHHHEEECCC--CcEEEEeCCCccccC
Confidence 34444433 345568899999999999999864 899999999987654
No 203
>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases
Probab=93.79 E-value=0.054 Score=53.84 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=32.0
Q ss_pred HcCccccCCCCCCeEEecCCCC---CeEEEecccccccCHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPH---RPILLDFGLTKKLSSSM 74 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g---~lvllDfG~v~~l~~~~ 74 (729)
...+.|+|+|++|+++..+++| .++||||..++.=++..
T Consensus 119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~~ 160 (196)
T smart00587 119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAE 160 (196)
T ss_pred ceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChHH
Confidence 3467899999999999876444 69999999999887654
No 204
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=93.78 E-value=0.068 Score=55.36 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=33.1
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.-+...|++|+|.+|.||++..+ +.+.+.|||+...+..
T Consensus 126 ~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~ 164 (272)
T cd05075 126 EYLSSKSFIHRDLAARNCMLNEN--MNVCVADFGLSKKIYN 164 (272)
T ss_pred HHHHHCCeeccccchhheEEcCC--CCEEECCCCcccccCc
Confidence 45568999999999999999764 7899999999877653
No 205
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=93.77 E-value=0.072 Score=58.51 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+ ++.+...|++|+|.+|.||+++.+ |.+.|.|||+...+..
T Consensus 107 ~~ql~~a-L~~LH~~givHrDlkp~NIll~~~--~~~kl~DfGla~~~~~ 153 (377)
T cd05629 107 MAECVLA-IEAVHKLGFIHRDIKPDNILIDRG--GHIKLSDFGLSTGFHK 153 (377)
T ss_pred HHHHHHH-HHHHHhCCeeccCCCHHHEEECCC--CCEEEeeccccccccc
Confidence 3344433 356678999999999999999864 8999999999876643
No 206
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.76 E-value=0.078 Score=56.13 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||....+...
T Consensus 141 ~~~~qi~~al-~~LH~~givH~dlkp~Nili~~~--~~~kl~D~g~~~~~~~~ 190 (304)
T cd05101 141 SCTYQVARGM-EYLASQKCIHRDLAARNVLVTEN--NVMKIADFGLARDVNNI 190 (304)
T ss_pred HHHHHHHHHH-HHHHHCCeeecccccceEEEcCC--CcEEECCCccceecccc
Confidence 3444555554 45578999999999999999864 89999999998877543
No 207
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=93.76 E-value=0.088 Score=54.41 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 112 ~~~l~~~l-~~Lh~~~i~H~di~p~nili~~~--~~~~l~dfg~~~~~~ 157 (266)
T cd05033 112 LRGIASGM-KYLSEMNYVHRDLAARNILVNSN--LVCKVSDFGLSRRLE 157 (266)
T ss_pred HHHHHHHH-HHHHhCCcccCCCCcceEEEcCC--CCEEECccchhhccc
Confidence 33444333 45578999999999999999864 789999999999885
No 208
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=93.75 E-value=0.042 Score=56.99 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.3
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
..+.|+|+|||||++.++ ++.||||..++-=++.+
T Consensus 146 ~~l~H~Dl~~~Nil~~~~---~~~lIDwE~a~~gdp~~ 180 (256)
T TIGR02721 146 LAPLHMDVHAYNLVVTPQ---GLKLIDWEYASDGDIAL 180 (256)
T ss_pred CeeecCCCCcCcEEEeCC---CCEEEeccccCcCCHHH
Confidence 468999999999999864 48999999888766654
No 209
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=93.72 E-value=0.087 Score=54.87 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++++. .-+...|++|+|.+|.||++..+ +.+.+.|||+...+...
T Consensus 106 ~~~~i~~~l-~~lH~~~ivH~dl~p~ni~i~~~--~~~~l~dfg~~~~~~~~ 154 (277)
T cd06642 106 ILREILKGL-DYLHSERKIHRDIKAANVLLSEQ--GDVKLADFGVAGQLTDT 154 (277)
T ss_pred HHHHHHHHH-HHHhcCCeeccCCChheEEEeCC--CCEEEccccccccccCc
Confidence 334444433 23456799999999999999865 78999999999887653
No 210
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=93.72 E-value=0.13 Score=54.74 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.2
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccc-cccCHHHHH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLT-KKLSSSMKQ 76 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v-~~l~~~~r~ 76 (729)
.|+.|+|.|++|+++.. +++.+|||+.+ -.....+-.
T Consensus 187 ~~liHgD~~~~Nil~~~---~~i~lIDfd~~~~~~~~~Dla 224 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD---NEVYVIDFDYCTIDLPVRDLR 224 (313)
T ss_pred CceEcCCCCcccEEEeC---CcEEEEECcccccCCcHHHHH
Confidence 68899999999999974 57999999954 334444333
No 211
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=93.70 E-value=0.086 Score=55.10 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.++ .-+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 100 ~~~qi~~al-~~lH~~~ivH~dikp~Nili~~~--~~~~l~Dfg~~~~~~~ 147 (277)
T cd05607 100 YSAQITCGI-LHLHSMDIVYRDMKPENVLLDDQ--GNCRLSDLGLAVELKD 147 (277)
T ss_pred HHHHHHHHH-HHHHHCCEEEccCChHhEEEcCC--CCEEEeeceeeeecCC
Confidence 344455443 55678999999999999999864 7899999999877654
No 212
>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi
Probab=93.69 E-value=0.075 Score=55.64 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. ..+...|++|.|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 102 i~~qi~~al-~~lH~~~ivH~dikp~Nil~~~~--~~~~l~dfg~~~~~~ 148 (279)
T cd05633 102 YATEIILGL-EHMHNRFVVYRDLKPANILLDEH--GHVRISDLGLACDFS 148 (279)
T ss_pred HHHHHHHHH-HHHHHCCcCCCCCCHHHEEECCC--CCEEEccCCcceecc
Confidence 444444433 56778999999999999999764 799999999887654
No 213
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=93.68 E-value=0.054 Score=59.63 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=32.6
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
+..+...|++|+|.+|.||+++.+ |.+.|.|||++..+
T Consensus 114 l~~lH~~~ivHrDlKp~NILl~~~--g~~kL~DFGla~~~ 151 (382)
T cd05625 114 VESVHKMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGF 151 (382)
T ss_pred HHHHHhCCeecCCCCHHHEEECCC--CCEEEeECCCCccc
Confidence 455678999999999999999865 89999999997644
No 214
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=93.68 E-value=0.086 Score=56.04 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.4
Q ss_pred HHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCHHH
Q 004807 35 YVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 35 f~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~~~ 74 (729)
...++.|+|.|||||++..+ .++++.||||..++.=++.+
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p~~ 218 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYRGF 218 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCcHH
Confidence 45678999999999999852 02689999999999666543
No 215
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=93.67 E-value=0.07 Score=54.28 Aligned_cols=53 Identities=26% Similarity=0.351 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
..++..++++. ..+...|++|+|.+|.||+++.+ +++.|.|||+...+.....
T Consensus 104 ~~~~~~l~~~l-~~lh~~~~~h~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~ 156 (260)
T cd06606 104 RKYTRQILEGL-AYLHSNGIVHRDIKGANILVDSD--GVVKLADFGCAKRLGDIET 156 (260)
T ss_pred HHHHHHHHHHH-HHHHHCCccccCCCHHHEEEcCC--CCEEEcccccEEecccccc
Confidence 44566666655 35678999999999999999864 8999999999988877643
No 216
>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc
Probab=93.67 E-value=0.082 Score=55.13 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 103 ~~~~~i~~~L-~~lH~~~~~H~dl~p~nil~~~~--~~~~l~df~~~~~~~~ 151 (283)
T cd07835 103 SYLYQLLQGI-AYCHSHRVLHRDLKPQNLLIDRE--GALKLADFGLARAFGV 151 (283)
T ss_pred HHHHHHHHHH-HHHHHCCeeCCCCCHHHEEEcCC--CcEEEeecccccccCC
Confidence 3455555543 45678999999999999999864 8999999999876643
No 217
>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili
Probab=93.67 E-value=0.099 Score=54.47 Aligned_cols=48 Identities=33% Similarity=0.575 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|.||+++++ +++.|.|||....+..
T Consensus 104 ~~~~l~~~l-~~Lh~~~i~H~dl~~~ni~i~~~--~~~~l~d~~~~~~~~~ 151 (283)
T cd07830 104 IIYQILQGL-AHIHKHGFFHRDLKPENLLVSGP--EVVKIADFGLAREIRS 151 (283)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCChhhEEEcCC--CCEEEeecccceeccC
Confidence 344444433 45578999999999999999864 8999999999887654
No 218
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=93.65 E-value=0.069 Score=54.73 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHH-----HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIY-----VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif-----~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+. ..|++|+|.||.||+++.+ +.+.|.|||+...++..
T Consensus 110 ~~~~i~~~l-~~lH~~~~~~~~i~h~dl~p~nili~~~--~~~kl~d~g~~~~~~~~ 163 (265)
T cd08217 110 ILTQLLLAL-YECHNRSDPGNTVLHRDLKPANIFLDAN--NNVKLGDFGLAKILGHD 163 (265)
T ss_pred HHHHHHHHH-HHHhcCccccCcceecCCCHHHEEEecC--CCEEEecccccccccCC
Confidence 444444444 3445 7799999999999999864 89999999999988653
No 219
>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po
Probab=93.59 E-value=0.07 Score=55.54 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++..+++++ ..+...|++|+|.+|.||++..+ +.+.+.|||+...+....
T Consensus 104 ~i~~~i~~al-~~LH~~~~~h~dl~p~nil~~~~--~~~~l~d~g~~~~~~~~~ 154 (287)
T cd07840 104 CYMKQLLEGL-QYLHSNGILHRDIKGSNILINND--GVLKLADFGLARPYTKRN 154 (287)
T ss_pred HHHHHHHHHH-HHHHHCCceeccCcHHHeEEcCC--CCEEEccccceeeccCCC
Confidence 4455555554 45678999999999999999864 899999999998886653
No 220
>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.
Probab=93.56 E-value=0.081 Score=54.70 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=30.8
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.|++|+|.+|.||++..+ +++.|.|||+...++..
T Consensus 133 ~~i~H~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~ 167 (269)
T cd08528 133 KRIVHRDLTPNNIMLGED--DKVTITDFGLAKQKQPE 167 (269)
T ss_pred CceeecCCCHHHEEECCC--CcEEEecccceeecccc
Confidence 579999999999999865 89999999999887654
No 221
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.54 E-value=0.11 Score=55.02 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||+....++
T Consensus 120 ~~~ql~~~L-~~LH~~~i~H~dl~p~nIl~~~~--~~~kL~dfg~~~~~~~ 167 (307)
T cd06607 120 ICHGALQGL-AYLHSHERIHRDIKAGNILLTEP--GTVKLADFGSASLVSP 167 (307)
T ss_pred HHHHHHHHH-HHHHHCCceecCCCcccEEECCC--CCEEEeecCcceecCC
Confidence 344444443 45578999999999999999864 8999999999876653
No 222
>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function. All known members of this group are proteins from drosophila and Caenorhabditis elegans.
Probab=93.54 E-value=0.13 Score=54.41 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=29.0
Q ss_pred ccccCCCCCCeEEecCCCC---CeEEEecccccccCH
Q 004807 39 FFNGDPHPGNFLVSKDPPH---RPILLDFGLTKKLSS 72 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g---~lvllDfG~v~~l~~ 72 (729)
+.|+|+|.+||++..+++| .++||||-+++.=++
T Consensus 217 l~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~p 253 (294)
T PF02958_consen 217 LCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYGSP 253 (294)
T ss_pred EEcCccCHHhEeEccccccccccceeeccccccCCCc
Confidence 5799999999999987655 799999998876555
No 223
>PTZ00036 glycogen synthase kinase; Provisional
Probab=93.53 E-value=0.08 Score=59.66 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||+++.+ ++.+.|.|||+.+.+.
T Consensus 175 ~~~qi~~gL-~yLH~~~IiHrDLKp~NILl~~~-~~~vkL~DFGla~~~~ 222 (440)
T PTZ00036 175 YSYQLCRAL-AYIHSKFICHRDLKPQNLLIDPN-THTLKLCDFGSAKNLL 222 (440)
T ss_pred HHHHHHHHH-HHHHHCCEecCCcCHHHEEEcCC-CCceeeeccccchhcc
Confidence 334444433 44578999999999999999864 3568999999987654
No 224
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=93.53 E-value=0.066 Score=55.00 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
..++..+++++ ..+.. .|++|+|.+|.||++..+ +.+.|.|||....+....
T Consensus 102 ~~~~~~l~~~l-~~lh~~~~~~H~~l~~~ni~~~~~--~~~~l~df~~~~~~~~~~ 154 (264)
T cd06623 102 AYIARQILKGL-DYLHTKRHIIHRDIKPSNLLINSK--GEVKIADFGISKVLENTL 154 (264)
T ss_pred HHHHHHHHHHH-HHHhccCCCccCCCCHHHEEECCC--CCEEEccCccceecccCC
Confidence 34555555555 45667 899999999999999864 899999999988775433
No 225
>PRK06149 hypothetical protein; Provisional
Probab=93.53 E-value=0.079 Score=65.62 Aligned_cols=35 Identities=23% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHcCccccCCCCCCeEEecCCCCCe---EEEecccccc
Q 004807 35 YVDGFFNGDPHPGNFLVSKDPPHRP---ILLDFGLTKK 69 (729)
Q Consensus 35 f~~GffHaDPHPGNilv~~d~~g~l---vllDfG~v~~ 69 (729)
+..|.+|+|.|+.||+|..++++++ ++||||-+..
T Consensus 206 L~~g~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~~ 243 (972)
T PRK06149 206 LPLQAVHLDITDDNVVGSRDADGRWQPDGVIDFGDLVR 243 (972)
T ss_pred CcccccCCCCCcccEEEcCCCCCCcceeEEEEcccchh
Confidence 4799999999999999987633444 9999999875
No 226
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=93.52 E-value=0.089 Score=54.05 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. ..+...|++|+|.+|.||++..+ +.+-+.|||+...+.
T Consensus 104 ~i~~qi~~~l-~~lH~~~i~H~dl~p~ni~i~~~--~~~kl~dfg~~~~~~ 151 (256)
T cd05059 104 DMCSDVCEAM-EYLESNGFIHRDLAARNCLVGED--NVVKVSDFGLARYVL 151 (256)
T ss_pred HHHHHHHHHH-HHHHHCCcccccccHhhEEECCC--CcEEECCcccceecc
Confidence 3455555544 45678999999999999999764 899999999987654
No 227
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=93.51 E-value=0.1 Score=54.13 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|+||++..+ +.+.+.|||+......
T Consensus 113 ~~~qi~~~l-~~lH~~~i~H~dl~~~nil~~~~--~~~~l~d~~~~~~~~~ 160 (272)
T cd06629 113 FTEQVLEGL-AYLHSKGILHRDLKADNLLVDAD--GICKISDFGISKKSDD 160 (272)
T ss_pred HHHHHHHHH-HHHhhCCeeecCCChhhEEEcCC--CeEEEeeccccccccc
Confidence 444455443 45668999999999999999864 8999999999876543
No 228
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=93.50 E-value=0.084 Score=54.11 Aligned_cols=47 Identities=30% Similarity=0.432 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+....
T Consensus 97 ~i~~qi~~~L-~~lH~~~i~H~di~~~nil~~~~--~~~~l~dfg~~~~~ 143 (265)
T cd05579 97 IYIAEIVLAL-EYLHSNGIIHRDLKPDNILIDSN--GHLKLTDFGLSKVG 143 (265)
T ss_pred HHHHHHHHHH-HHHHHcCeecCCCCHHHeEEcCC--CCEEEEecccchhc
Confidence 3455555544 45578999999999999999865 79999999986654
No 229
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=93.49 E-value=0.069 Score=55.70 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ |.+.|.|||+...+.
T Consensus 106 ~~~qi~~~L-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~ 152 (285)
T cd07861 106 YLYQILQGI-LFCHSRRVLHRDLKPQNLLIDNK--GVIKLADFGLARAFG 152 (285)
T ss_pred HHHHHHHHH-HHHHhCCeeecCCCHHHEEEcCC--CcEEECcccceeecC
Confidence 445555544 44568999999999999999865 899999999987654
No 230
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=93.49 E-value=0.083 Score=56.93 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+ +.-+...|++|+|.+|.||+++.+ +++.|.|||+...+.
T Consensus 107 ~~~qi~~a-l~~lH~~~iiHrDlkp~Nili~~~--~~~kL~DfG~a~~~~ 153 (332)
T cd05623 107 YLAEMVIA-IDSVHQLHYVHRDIKPDNILMDMN--GHIRLADFGSCLKLM 153 (332)
T ss_pred HHHHHHHH-HHHHHHCCeEecCCCHHHEEECCC--CCEEEeecchheecc
Confidence 34444443 355678999999999999999764 899999999886653
No 231
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=93.48 E-value=0.086 Score=55.07 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.+. ..+...|+.|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 98 ~~~~~qi~~~l-~~lH~~~i~H~dlkp~Nill~~~--~~~~l~dfg~~~~~~~ 147 (279)
T cd06619 98 GRIAVAVVKGL-TYLWSLKILHRDVKPSNMLVNTR--GQVKLCDFGVSTQLVN 147 (279)
T ss_pred HHHHHHHHHHH-HHHHHCCEeeCCCCHHHEEECCC--CCEEEeeCCcceeccc
Confidence 34555555544 55678999999999999999865 8999999999887654
No 232
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=93.48 E-value=0.084 Score=54.52 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. .-+...|++|+|.+|+|++++.+ +.+.|.|||+...+..
T Consensus 109 ~~~~~qi~~~l-~~lH~~~i~H~dl~p~nill~~~--~~~~l~dfg~~~~~~~ 158 (267)
T cd06646 109 AYVCRETLQGL-AYLHSKGKMHRDIKGANILLTDN--GDVKLADFGVAAKITA 158 (267)
T ss_pred HHHHHHHHHHH-HHHHHCCccccCCCHHHEEECCC--CCEEECcCccceeecc
Confidence 33455555544 45578899999999999999764 7899999999988753
No 233
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=93.46 E-value=0.089 Score=54.29 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++++. .-+...|++|+|.+|.||+++.+ +++-|.|||+...+...
T Consensus 118 ~~~ql~~al-~~lH~~~i~H~~l~p~ni~~~~~--~~~~l~d~~~~~~~~~~ 166 (275)
T cd06608 118 ILRETLRGL-AYLHENKVIHRDIKGQNILLTKN--AEVKLVDFGVSAQLDST 166 (275)
T ss_pred HHHHHHHHH-HHHhcCCcccCCCCHHHEEEccC--CeEEECCCccceecccc
Confidence 445555554 34578999999999999999865 78999999998876543
No 234
>smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.
Probab=93.45 E-value=0.084 Score=52.51 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++..+++.. ..+...|++|+|.+|.|+++..+ +++.|+|||....+....
T Consensus 102 ~~~~~l~~~l-~~lh~~~i~h~di~~~ni~v~~~--~~~~l~d~g~~~~~~~~~ 152 (225)
T smart00221 102 FYLRQILEAL-EYLHSLGIVHRDLKPENILLGMD--GLVKLADFGLARFIHRDL 152 (225)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEeeCceeeEecCcc
Confidence 3444444443 45667899999999999999864 899999999999887654
No 235
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=93.44 E-value=0.086 Score=55.02 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 126 ~~~qi~~al-~~LH~~~ivH~dl~~~nili~~~--~~~~l~dfg~~~~~~~ 173 (282)
T cd06636 126 ICREILRGL-AHLHAHKVIHRDIKGQNVLLTEN--AEVKLVDFGVSAQLDR 173 (282)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEeeCcchhhhhc
Confidence 344455544 45578999999999999999865 7899999999887643
No 236
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=93.43 E-value=0.1 Score=54.69 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..+++++. .+...|++|+|.+|.||+++.+ +.+.|.|||....+...
T Consensus 121 i~~~i~~~L~-~lH~~gi~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~ 169 (286)
T cd06614 121 VCREVLQGLE-YLHSQNVIHRDIKSDNILLSKD--GSVKLADFGFAAQLTKE 169 (286)
T ss_pred HHHHHHHHHH-HHHhCCeeeCCCChhhEEEcCC--CCEEECccchhhhhccc
Confidence 4555555443 4567999999999999999864 89999999988766543
No 237
>PHA03209 serine/threonine kinase US3; Provisional
Probab=93.42 E-value=0.082 Score=57.68 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++++ +..+...|++|+|.+|.||++..+ +++.|.|||+...
T Consensus 161 ~i~~qi~~a-L~~LH~~~ivHrDlkp~Nill~~~--~~~kl~DfG~a~~ 206 (357)
T PHA03209 161 IIEKQILEG-LRYLHAQRIIHRDVKTENIFINDV--DQVCIGDLGAAQF 206 (357)
T ss_pred HHHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEEecCccccc
Confidence 344455444 345678999999999999999864 7899999998864
No 238
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=93.37 E-value=0.095 Score=53.69 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 105 ~~~~l~~~l-~~lH~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~ 152 (256)
T cd05112 105 MCLDVCEGM-AYLESSNVIHRDLAARNCLVGEN--QVVKVSDFGMTRFVLD 152 (256)
T ss_pred HHHHHHHHH-HHHHHCCccccccccceEEEcCC--CeEEECCCcceeeccc
Confidence 344444433 34578899999999999999754 7899999999876643
No 239
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=93.35 E-value=0.081 Score=57.53 Aligned_cols=47 Identities=23% Similarity=0.445 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+ +..+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 124 ~~ql~~a-L~~LH~~gi~H~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~~ 170 (353)
T cd07850 124 LYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAGT 170 (353)
T ss_pred HHHHHHH-HHHHHhCCeeeCCCCHHHEEECCC--CCEEEccCccceeCCC
Confidence 3444432 456678999999999999999865 8999999999987654
No 240
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=93.35 E-value=0.087 Score=56.98 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=41.5
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEec--ccccccCHHHHHHHHHHHHHHHhCCH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDF--GLTKKLSSSMKQALAKMFFAAAEGDH 90 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDf--G~v~~l~~~~r~~l~~L~~a~~~~D~ 90 (729)
...+.|+|.|+|||++.++ .+.+||| +.++...-+.=.-++.|+.+...++.
T Consensus 191 ~~~llHGDl~~gNi~~~~~---~~~~iD~e~~~~G~~~~Dlg~~ianL~l~~~~~~~ 244 (370)
T TIGR01767 191 AETLLHGDLHSGSIFVSEH---ETKVIDPEFAFYGPIGFDIGQFIANLFLNALSRDG 244 (370)
T ss_pred cceeeeccCCcccEEEcCC---CCEEEcCcccccCchHhhHHHHHHHHHHHHhCccc
Confidence 4577999999999999764 6889998 56777777777777888888776653
No 241
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=93.34 E-value=0.11 Score=54.05 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+..
T Consensus 114 ~~~qi~~~l-~~LH~~~i~H~di~p~nil~~~~--~~~kL~dfg~~~~~~~ 161 (279)
T cd05057 114 WCVQIAKGM-SYLEEKRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLDV 161 (279)
T ss_pred HHHHHHHHH-HHHHhCCEEecccCcceEEEcCC--CeEEECCCcccccccC
Confidence 334444433 45567999999999999999764 7899999999887753
No 242
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=93.34 E-value=0.16 Score=54.95 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 177 ~~~~qi~~aL-~~lH~~~ivHrDikp~Nill~~~--~~vkL~DfG~a~~~~~ 225 (337)
T cd05054 177 SYSFQVARGM-EFLASRKCIHRDLAARNILLSEN--NVVKICDFGLARDIYK 225 (337)
T ss_pred HHHHHHHHHH-HHHHhCCeecCCCCcceEEEeCC--CcEEEeccccchhccc
Confidence 3444444443 34568899999999999999864 7899999999887653
No 243
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=93.33 E-value=0.11 Score=53.05 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 106 ~~~~~l~~~l-~~lH~~~i~H~di~p~nil~~~~--~~~~l~df~~~~~~~ 153 (257)
T cd08223 106 EWFVQIAMAL-QYLHEKHILHRDLKTQNVFLTRT--NIIKVGDLGIARVLE 153 (257)
T ss_pred HHHHHHHHHH-HHHHhCCeeccCCCchhEEEecC--CcEEEecccceEEec
Confidence 3444455443 56789999999999999999764 899999999987764
No 244
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.31 E-value=0.092 Score=55.72 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||....+..
T Consensus 145 ~~~qi~~aL-~~lH~~gi~H~dlkp~Nill~~~--~~~kL~dfg~a~~~~~ 192 (307)
T cd05098 145 CAYQVARGM-EYLASKKCIHRDLAARNVLVTED--NVMKIADFGLARDIHH 192 (307)
T ss_pred HHHHHHHHH-HHHHHCCcccccccHHheEEcCC--CcEEECCCcccccccc
Confidence 344444433 55678999999999999999865 7999999999876653
No 245
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=93.27 E-value=0.098 Score=56.44 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=28.9
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.+++|+|.+|.||+++.+ |.+.|.|||+...+..
T Consensus 123 ~~ivH~dlkp~Nili~~~--~~~kL~Dfg~~~~~~~ 156 (333)
T cd06650 123 HKIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLID 156 (333)
T ss_pred CCEEecCCChhhEEEcCC--CCEEEeeCCcchhhhh
Confidence 479999999999999764 7899999998766543
No 246
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=93.27 E-value=0.089 Score=62.60 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+ +..+...|++|+|.+|.||++..+ +.+.|.|||+.+...
T Consensus 108 ~i~~qil~a-L~yLH~~gIiHrDLKP~NILl~~~--g~vkL~DFGls~~~~ 155 (669)
T cd05610 108 KYISEVALA-LDYLHRHGIIHRDLKPDNMLISNE--GHIKLTDFGLSKVTL 155 (669)
T ss_pred HHHHHHHHH-HHHHHhCCEEeCCccHHHEEEcCC--CCEEEEeCCCCcccc
Confidence 344444443 455678999999999999999764 899999999987654
No 247
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=93.26 E-value=0.1 Score=54.58 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+..
T Consensus 102 ~~~qi~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~~ 149 (280)
T cd05608 102 YTAQIISGL-EHLHQRRIIYRDLKPENVLLDND--GNVRISDLGLAVELKD 149 (280)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEeeCccceecCC
Confidence 344444433 44578999999999999999764 8999999999877654
No 248
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=93.24 E-value=0.087 Score=54.97 Aligned_cols=47 Identities=21% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. ..+...|++|+|.+|.||+++.+ +++.|.|||+...+.
T Consensus 104 ~~~qi~~al-~~LH~~~i~H~dl~~~nil~~~~--~~~~l~dfg~~~~~~ 150 (284)
T cd07839 104 FMFQLLKGL-AFCHSHNVLHRDLKPQNLLINKN--GELKLADFGLARAFG 150 (284)
T ss_pred HHHHHHHHH-HHHHHCCEecCCCCHHHEEEcCC--CcEEECccchhhccC
Confidence 333444433 45568999999999999999865 899999999987654
No 249
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=93.23 E-value=0.11 Score=54.84 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. .-+...|+.|+|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 133 ~i~~~i~~al-~~lH~~~i~H~dlkp~Nill~~~--~~~kl~dfg~~~~~~ 180 (295)
T cd05097 133 YMAVQIASGM-KYLASLNFVHRDLATRNCLVGNH--YTIKIADFGMSRNLY 180 (295)
T ss_pred HHHHHHHHHH-HHHHhcCeeccccChhhEEEcCC--CcEEecccccccccc
Confidence 3455555554 34478999999999999999864 789999999987653
No 250
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=93.23 E-value=0.098 Score=54.04 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 118 ~~~~i~~aL-~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~~~ 165 (273)
T cd05035 118 FMVDIALGM-EYLSNRNFIHRDLAARNCMLRED--MTVCVADFGLSKKIYS 165 (273)
T ss_pred HHHHHHHHH-HHHHhCCeeccccchheEEECCC--CeEEECCccceeeccc
Confidence 344444443 56678999999999999999865 7999999999887643
No 251
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=93.22 E-value=0.084 Score=56.71 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++. .-+...|++|+|.+|.||+++.+ |++.|.|||+....
T Consensus 108 i~~qi~~aL-~~LH~~~ivH~dlkp~NIll~~~--~~~kL~Dfg~~~~~ 153 (338)
T cd07859 108 FLYQLLRAL-KYIHTANVFHRDLKPKNILANAD--CKLKICDFGLARVA 153 (338)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CcEEEccCcccccc
Confidence 444444443 44578999999999999999864 89999999998764
No 252
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=93.21 E-value=0.096 Score=57.43 Aligned_cols=46 Identities=28% Similarity=0.462 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++ +..+...|++|+|.+|.||+++.+ +.+.|.|||+....
T Consensus 108 ~~~qi~~a-L~~LH~~~ivH~dlkp~Nili~~~--~~~kL~Dfg~a~~~ 153 (372)
T cd07853 108 FLYQILRG-LKYLHSAGILHRDIKPGNLLVNSN--CVLKICDFGLARVE 153 (372)
T ss_pred HHHHHHHH-HHHHHhCCeeCCCCChHHEEECCC--CCEEeccccceeec
Confidence 44444444 345578999999999999999864 89999999988754
No 253
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=93.18 E-value=0.1 Score=54.83 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|.|.+|.|++++.+ +.+.|.|||+...++.
T Consensus 107 ~~~ql~~~l-~~lH~~~iiH~dikp~Nili~~~--~~~kl~Dfg~~~~~~~ 154 (285)
T cd05632 107 YAAEILCGL-EDLHRENTVYRDLKPENILLDDY--GHIRISDLGLAVKIPE 154 (285)
T ss_pred HHHHHHHHH-HHHHhCCeeecCCCHHHEEECCC--CCEEEecCCcceecCC
Confidence 444444444 55678999999999999999764 7899999998876653
No 254
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=93.18 E-value=0.14 Score=53.44 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|.+|.||+++.+ +++.+.|||+...+..
T Consensus 108 ~~~qi~~~L-~~LH~~~i~H~dlkp~nili~~~--~~~kl~dfg~~~~~~~ 155 (282)
T cd06643 108 VCKQTLEAL-NYLHENKIIHRDLKAGNILFTLD--GDIKLADFGVSAKNTR 155 (282)
T ss_pred HHHHHHHHH-HHHHHCCeeecCCCcccEEEccC--CCEEEccccccccccc
Confidence 444444443 45678999999999999999764 8999999998876543
No 255
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=93.15 E-value=0.1 Score=53.63 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++..++.++ +.+...|++|+|.+|.||++..+ +.+.|.|||....+....
T Consensus 98 ~~~~i~~~l-~~lH~~~~~h~dl~~~nilv~~~--~~~~l~df~~~~~~~~~~ 147 (262)
T cd05572 98 YIACVVLAF-EYLHNRGIIYRDLKPENLLLDSN--GYVKLVDFGFAKKLKSGQ 147 (262)
T ss_pred HHHHHHHHH-HHHhhCCcccCCCCHHHEEEcCC--CCEEEeeCCcccccCccc
Confidence 333444433 56778999999999999999865 899999999999887653
No 256
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=93.15 E-value=0.086 Score=54.38 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||....+.
T Consensus 107 ~~~qi~~~l-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~ 153 (265)
T cd06631 107 YTKQILDGV-AYLHNNCVVHRDIKGNNVMLMPN--GIIKLIDFGCARRLA 153 (265)
T ss_pred HHHHHHHHH-HHHHhCCcccCCcCHHhEEECCC--CeEEeccchhhHhhh
Confidence 344444433 34578899999999999999764 899999999877653
No 257
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=93.13 E-value=0.077 Score=60.15 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=51.7
Q ss_pred HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCcCCCCcHHHHH
Q 004807 34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAM 113 (729)
Q Consensus 34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG~~~~~~~~~~~~ 113 (729)
+-+.|.+|||++|-|||+-.-...+|=+||||.--..++..- .|+ .-..-..-|++..+.+....|+=-+.-
T Consensus 305 L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy-tYi-------QSRfYRAPEVILGlpY~~~IDmWSLGC 376 (586)
T KOG0667|consen 305 LHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY-TYI-------QSRFYRAPEVILGLPYDTAIDMWSLGC 376 (586)
T ss_pred HHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcce-eee-------eccccccchhhccCCCCCccceeehhh
Confidence 348999999999999987643235799999999888777654 222 112333456666666654445444444
Q ss_pred HHHHHHhh
Q 004807 114 EVSTLFFR 121 (729)
Q Consensus 114 ~~~~~~~~ 121 (729)
-+++++.-
T Consensus 377 IlAEL~tG 384 (586)
T KOG0667|consen 377 ILAELFTG 384 (586)
T ss_pred hHHhHhcC
Confidence 45555544
No 258
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=93.13 E-value=0.093 Score=56.46 Aligned_cols=48 Identities=29% Similarity=0.458 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|+||+++.+ +.+.|.|||....+..
T Consensus 110 ~~~qi~~aL-~~LH~~givH~dlkp~Nili~~~--~~~kl~Dfg~a~~~~~ 157 (332)
T cd07857 110 FIYQILCGL-KYIHSANVLHRDLKPGNLLVNAD--CELKICDFGLARGFSE 157 (332)
T ss_pred HHHHHHHHH-HHHHhCCcccCCCCHHHeEEcCC--CCEEeCcCCCceeccc
Confidence 444444443 44578999999999999999865 8999999999987764
No 259
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=93.12 E-value=0.1 Score=54.50 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 128 ~~~~~l~~al-~~lH~~~i~H~dlkp~Nil~~~~--~~~~L~dfg~~~~~~ 175 (283)
T cd05048 128 HIAIQIAAGM-EYLSSHHFVHRDLAARNCLVGEG--LTVKISDFGLSRDIY 175 (283)
T ss_pred HHHHHHHHHH-HHHHhCCeeccccccceEEEcCC--CcEEECCCcceeecc
Confidence 4555566555 55688999999999999999864 789999999987653
No 260
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=93.10 E-value=0.1 Score=54.48 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 129 i~~~i~~al-~~lH~~~i~H~dlkp~nili~~~--~~~kl~dfg~~~~~~~ 176 (283)
T cd05090 129 IAIQIAAGM-EYLSSHFFVHKDLAARNILIGEQ--LHVKISDLGLSREIYS 176 (283)
T ss_pred HHHHHHHHH-HHHHhcCeehhccccceEEEcCC--CcEEeccccccccccC
Confidence 455555543 56678999999999999999865 7899999999987643
No 261
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=93.06 E-value=0.12 Score=53.12 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. ..+...|++|+|.+|.|+++..+ +.+.|.|||....+..
T Consensus 106 ~~~~~l~~aL-~~lH~~~i~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~ 154 (260)
T cd05073 106 DFSAQIAEGM-AFIEQRNYIHRDLRAANILVSAS--LVCKIADFGLARVIED 154 (260)
T ss_pred HHHHHHHHHH-HHHHhCCccccccCcceEEEcCC--CcEEECCCcceeeccC
Confidence 3455666555 45678999999999999999764 7999999999887653
No 262
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=93.06 E-value=0.12 Score=52.74 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.+. ..+...|++|+|.+|.||++..+ +++.|.|||+...++..
T Consensus 107 ~~~~~l~~al-~~lh~~~i~h~~l~~~ni~~~~~--~~~kl~d~g~~~~~~~~ 156 (256)
T cd08530 107 RIFIQLLRGL-QALHEQKILHRDLKSANILLVAN--DLVKIGDLGISKVLKKN 156 (256)
T ss_pred HHHHHHHHHH-HHHhhCCcccCCCCcceEEEecC--CcEEEeeccchhhhccC
Confidence 3444555544 45678999999999999999864 78999999988776553
No 263
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=93.05 E-value=0.093 Score=55.11 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 131 ~i~~~i~~~l-~~LH~~~ivH~dikp~nill~~~--~~~kl~dfg~~~~~~ 178 (290)
T cd05045 131 SFAWQISRGM-QYLAEMKLVHRDLAARNVLVAEG--RKMKISDFGLSRDVY 178 (290)
T ss_pred HHHHHHHHHH-HHHHHCCeehhhhhhheEEEcCC--CcEEecccccccccc
Confidence 4455555544 55678999999999999999764 789999999987664
No 264
>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both
Probab=93.05 E-value=0.13 Score=53.45 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..++..++.+. .-+...|++|+|.+|.||++..+ +++.|.|||....++..
T Consensus 110 ~~~~~~i~~al-~~LH~~~i~h~~l~~~nili~~~--~~~~l~dfg~~~~~~~~ 160 (287)
T cd07838 110 KDLMRQLLRGV-DFLHSHRIVHRDLKPQNILVTSD--GQVKIADFGLARIYSFE 160 (287)
T ss_pred HHHHHHHHHHH-HHHHHCCeeeccCChhhEEEccC--CCEEEeccCcceeccCC
Confidence 33555555544 45678999999999999999865 89999999998877543
No 265
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=93.03 E-value=0.12 Score=54.80 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 113 ~~~~qi~~~L-~~LH~~~ivH~dikp~Nill~~~--~~~kL~Dfg~~~~~~~ 161 (303)
T cd05110 113 NWCVQIAKGM-MYLEERRLVHRDLAARNVLVKSP--NHVKITDFGLARLLEG 161 (303)
T ss_pred HHHHHHHHHH-HHHhhcCeeccccccceeeecCC--CceEEccccccccccC
Confidence 3445555543 45678999999999999999764 7899999999987754
No 266
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=93.03 E-value=0.097 Score=52.50 Aligned_cols=50 Identities=28% Similarity=0.462 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++..+++++ ..+...|++|+|++|.||++..+ +.+.+.|||....+....
T Consensus 92 ~~~~l~~~l-~~lh~~~i~h~~i~~~ni~~~~~--~~~~l~d~~~~~~~~~~~ 141 (244)
T smart00220 92 YARQILSAL-EYLHSNGIIHRDLKPENILLDED--GHVKLADFGLARQLDPGG 141 (244)
T ss_pred HHHHHHHHH-HHHHHcCeecCCcCHHHeEECCC--CcEEEccccceeeecccc
Confidence 444444433 45678899999999999999864 899999999999987763
No 267
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=93.03 E-value=0.092 Score=55.51 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+..++++ +.-+...|++|+|.+|+||+++.+ +.+.|.|||+.....
T Consensus 110 ~~qi~~a-L~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~~ 155 (301)
T cd07873 110 LFQLLRG-LNYCHRRKVLHRDLKPQNLLINER--GELKLADFGLARAKS 155 (301)
T ss_pred HHHHHHH-HHHHHhCCeeCCCCCHHHEEECCC--CcEEECcCcchhccC
Confidence 3344443 345568999999999999999865 799999999987543
No 268
>PRK10593 hypothetical protein; Provisional
Probab=93.01 E-value=0.081 Score=56.29 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=27.9
Q ss_pred cCccccCCCCCCeEEecCCCCC-eEEEecccccccCHHH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHR-PILLDFGLTKKLSSSM 74 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~-lvllDfG~v~~l~~~~ 74 (729)
..+.|+|.||||++++.+ +++ +++||...|.--+.+.
T Consensus 193 psLlHGDlw~gNvl~~~~-~~~i~~liDPa~~~~g~rE~ 230 (297)
T PRK10593 193 CVLVHGNFTLRSMLKDPR-SDQLLAMLNPGLMLWAPREY 230 (297)
T ss_pred CeeEeCCCCcccEEECCC-CCceEEEECchHhCCCCHHH
Confidence 467999999999999864 245 7999998655444433
No 269
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=93.00 E-value=0.11 Score=56.25 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..+++++ .-+...|++|+|.+|.||+++.+ +.+.|.|||+.....
T Consensus 124 ~i~~qi~~aL-~~LH~~~ivH~dlkp~NIll~~~--~~~kl~dfg~~~~~~ 171 (345)
T cd07877 124 FLIYQILRGL-KYIHSADIIHRDLKPSNLAVNED--CELKILDFGLARHTD 171 (345)
T ss_pred HHHHHHHHHH-HHHHHCCeeecCCChHHEEEcCC--CCEEEeccccccccc
Confidence 3555555554 55678999999999999999865 899999999887654
No 270
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=92.99 E-value=0.15 Score=53.30 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||++..+ +.+.|.|||+...++.
T Consensus 112 i~~~l~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~~ 159 (283)
T cd05080 112 FAQQICEGM-AYLHSQHYIHRDLAARNVLLDND--RLVKIGDFGLAKAVPE 159 (283)
T ss_pred HHHHHHHHH-HHHHHCCeeccccChheEEEcCC--CcEEEeecccccccCC
Confidence 344444433 45578999999999999999764 7899999999877654
No 271
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=92.98 E-value=0.056 Score=59.52 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=42.0
Q ss_pred HHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHH
Q 004807 27 TRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALA 79 (729)
Q Consensus 27 ~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~ 79 (729)
+.+|++||+ ..|++|.|.+..|||++. +|.|-|=|||+..-++.+.++.|.
T Consensus 220 IKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn--~G~LKiaDFGLAr~y~~~~~~~~T 277 (560)
T KOG0600|consen 220 IKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDN--NGVLKIADFGLARFYTPSGSAPYT 277 (560)
T ss_pred HHHHHHHHHHHHHHHhhcCeeeccccccceEEcC--CCCEEeccccceeeccCCCCcccc
Confidence 455556655 789999999999999975 489999999999988888777654
No 272
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=92.97 E-value=0.11 Score=53.50 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. +.+...|++|+|.+|.|++++.+ +.+.|.|||+...+.
T Consensus 107 i~~~i~~al-~~LH~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~ 153 (260)
T cd05067 107 MAAQIAEGM-AFIERKNYIHRDLRAANILVSET--LCCKIADFGLARLIE 153 (260)
T ss_pred HHHHHHHHH-HHHhcCCeecccccHHhEEEcCC--CCEEEccCcceeecC
Confidence 344444443 56678999999999999999865 789999999998876
No 273
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=92.97 E-value=0.12 Score=54.18 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. .-+...|++|+|..|.||++..+ +.+.|.|||....+..
T Consensus 136 ~i~~qi~~al-~~LH~~~ivH~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~~ 184 (293)
T cd05053 136 SFAYQVARGM-EFLASKKCIHRDLAARNVLVTED--HVMKIADFGLARDIHH 184 (293)
T ss_pred HHHHHHHHHH-HHHHHCCccccccceeeEEEcCC--CeEEeCcccccccccc
Confidence 3455555444 45578999999999999999864 8999999999887654
No 274
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=92.97 E-value=0.14 Score=58.46 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=32.2
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..+...|++|+|.+|.||+++.+ +++.|.|||+...+.
T Consensus 323 ~~lH~~~ivHrDLKp~NILl~~~--~~~kL~DFGla~~~~ 360 (507)
T PLN03224 323 RKLHRIGIVHRDIKPENLLVTVD--GQVKIIDFGAAVDMC 360 (507)
T ss_pred HHHHHCCeecCCCchHhEEECCC--CcEEEEeCcCccccc
Confidence 44678899999999999999865 799999999876543
No 275
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=92.95 E-value=0.14 Score=53.48 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++++. .-+...|+.|+|.+|.||++..+ +++.|.|||+...+.+.
T Consensus 114 i~~qi~~~l-~~lH~~~iiH~dlkp~nili~~~--~~~kl~Dfg~~~~~~~~ 162 (279)
T cd05111 114 WCVQIAKGM-YYLEEHRMVHRNLAARNILLKSD--SIVQIADFGVADLLYPD 162 (279)
T ss_pred HHHHHHHHH-HHHHHCCEeccccCcceEEEcCC--CcEEEcCCccceeccCC
Confidence 444554443 34568899999999999999764 88999999999876543
No 276
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=92.93 E-value=0.11 Score=53.63 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..+++++ .-+...|++|+|.+|.||+++.+ +.+.+.|||+...+..
T Consensus 111 ~~~~i~~~l-~~LH~~~i~H~dl~p~nili~~~--~~~~l~dfg~~~~~~~ 158 (267)
T cd08229 111 YFVQLCSAL-EHMHSRRVMHRDIKPANVFITAT--GVVKLGDLGLGRFFSS 158 (267)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CCEEECcchhhhcccc
Confidence 344444443 45678899999999999999764 8999999998876643
No 277
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=92.93 E-value=0.1 Score=55.87 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...
T Consensus 100 ~~~~qi~~al-~~LH~~~ivHrdikp~Nil~~~~--~~~kl~Dfg~~~~ 145 (316)
T cd05619 100 FYAAEIICGL-QFLHSKGIVYRDLKLDNILLDTD--GHIKIADFGMCKE 145 (316)
T ss_pred HHHHHHHHHH-HHHHhCCeEeCCCCHHHEEECCC--CCEEEccCCcceE
Confidence 3455555543 55678999999999999999865 7999999998765
No 278
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=92.92 E-value=0.1 Score=53.85 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+++..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 110 ~~~~~l~~~l-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~Dfg~~~~~~ 157 (265)
T cd06652 110 KYTRQILEGV-SYLHSNMIVHRDIKGANILRDSV--GNVKLGDFGASKRLQ 157 (265)
T ss_pred HHHHHHHHHH-HHHHhCCEecCCCCHHHEEecCC--CCEEECcCccccccc
Confidence 3455555544 45578999999999999999864 899999999888664
No 279
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=92.90 E-value=0.12 Score=54.36 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++..++.+. ..+...|++|+|..|.||++..+ +++.|.|||+...+.
T Consensus 133 ~~~~~~i~~al-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~ 181 (296)
T cd05095 133 IFMATQIASGM-KYLSSLNFVHRDLATRNCLVGKN--YTIKIADFGMSRNLY 181 (296)
T ss_pred HHHHHHHHHHH-HHHHHCCeecccCChheEEEcCC--CCEEeccCccccccc
Confidence 34445555444 56678999999999999999864 899999999987763
No 280
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=92.88 E-value=0.17 Score=52.43 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.+++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||....+...
T Consensus 101 ~~~~~~i~~~l-~~LH~~~i~H~~l~~~ni~~~~~--~~~~l~d~g~~~~~~~~ 151 (282)
T cd07829 101 KSIMYQLLRGL-AYCHSHRILHRDLKPQNILINRD--GVLKLADFGLARAFGIP 151 (282)
T ss_pred HHHHHHHHHHH-HHHHHCCcccCCCChheEEEcCC--CCEEEecCCcccccCCC
Confidence 34455555544 56778999999999999999864 89999999998876543
No 281
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=92.85 E-value=0.11 Score=53.49 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++++.. -+...|++|+|.+|.||++..+ +.+.|.|||+...++..
T Consensus 110 ~~~~~i~~~l~-~LH~~~i~H~dl~~~nil~~~~--~~~~l~d~g~~~~~~~~ 159 (267)
T cd08228 110 KYFVQLCSAVE-HMHSRRVMHRDIKPANVFITAT--GVVKLGDLGLGRFFSSK 159 (267)
T ss_pred HHHHHHHHHHH-HHhhCCeeCCCCCHHHEEEcCC--CCEEECccccceeccch
Confidence 44555555543 4578999999999999999765 78999999998887654
No 282
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=92.85 E-value=0.15 Score=52.15 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC-----CeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH-----RPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g-----~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||++..+++. .+.|.|||+...+..
T Consensus 106 ~~~~i~~~l-~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~ 160 (259)
T cd05037 106 VAKQLASAL-HYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS 160 (259)
T ss_pred HHHHHHHHH-HHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccccc
Confidence 344555443 45578899999999999999875211 699999999887644
No 283
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=92.84 E-value=0.083 Score=53.79 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807 24 EEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL 78 (729)
Q Consensus 24 ~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l 78 (729)
..=+.+|+.|++ ....+|.|.+|-|+++..+ |.|-+=|||+.+-+....+..-
T Consensus 100 pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~--g~lKiADFGLAr~f~~p~~~~~ 159 (318)
T KOG0659|consen 100 PADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSD--GQLKIADFGLARFFGSPNRIQT 159 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCC--CcEEeecccchhccCCCCcccc
Confidence 333566666655 6788999999999999975 8999999999999987666544
No 284
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=92.80 E-value=0.11 Score=54.30 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++.+. ..+...|++|+|.+|.||++..+ +.+.+.|||....+
T Consensus 134 ~~~~~i~~aL-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~ 180 (288)
T cd05050 134 CIAKQVAAGM-AYLSERKFVHRDLATRNCLVGEN--MVVKIADFGLSRNI 180 (288)
T ss_pred HHHHHHHHHH-HHHHhCCeecccccHhheEecCC--CceEECccccceec
Confidence 4555555554 45678999999999999999764 89999999987655
No 285
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=92.77 E-value=0.14 Score=52.83 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..+++.. .-+...|++|+|.+|.||++..+ +.+.|.|||....+..
T Consensus 108 ~~~~ql~~~l-~~lH~~~i~H~dlkp~nil~~~~--~~~kl~df~~~~~~~~ 156 (263)
T cd05052 108 YMATQISSAM-EYLEKKNFIHRDLAARNCLVGEN--HLVKVADFGLSRLMTG 156 (263)
T ss_pred HHHHHHHHHH-HHHHhCCEeecccCcceEEEcCC--CcEEeCCCcccccccc
Confidence 3455555554 45578899999999999999764 8999999999887754
No 286
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=92.75 E-value=0.13 Score=53.98 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+. ..+...|++|+|..|.||+++.+ +.+.|.|||+...++.
T Consensus 108 ~~qi~~~l-~~lH~~~iiH~dikp~Nill~~~--~~~kl~Dfg~~~~~~~ 154 (285)
T cd05631 108 AAELCCGL-EDLQRERIVYRDLKPENILLDDR--GHIRISDLGLAVQIPE 154 (285)
T ss_pred HHHHHHHH-HHHHhCCEEeCCCCHHHEEECCC--CCEEEeeCCCcEEcCC
Confidence 33444333 44578999999999999999764 7899999999887653
No 287
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=92.75 E-value=0.12 Score=56.09 Aligned_cols=51 Identities=31% Similarity=0.472 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..++..+++++ ..+...|++|+|.+|.||+++.+ +++.|+|||+...+...
T Consensus 121 ~~~~~ql~~aL-~~LH~~gi~H~dlkp~Nill~~~--~~~kL~dfg~~~~~~~~ 171 (343)
T cd07851 121 QFLVYQILRGL-KYIHSAGIIHRDLKPSNIAVNED--CELKILDFGLARHTDDE 171 (343)
T ss_pred HHHHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CCEEEcccccccccccc
Confidence 33455555544 45678899999999999999864 89999999999877543
No 288
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=92.74 E-value=0.099 Score=53.71 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++..+++++ .-+...|++|+|.+|.||+++.+ +.+.|.|||....+....
T Consensus 103 ~i~~~i~~~l-~~lh~~~i~H~dl~~~nil~~~~--~~~kl~d~g~~~~~~~~~ 153 (264)
T cd06626 103 VYTLQLLEGL-AYLHSHGIVHRDIKPANIFLDHN--GVIKLGDFGCAVKLKNNT 153 (264)
T ss_pred HHHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEcccccccccCCCC
Confidence 3455555555 34478999999999999999864 899999999998876543
No 289
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=92.72 E-value=0.13 Score=58.93 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=32.9
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..+...|++|+|.+|.||+++.+ +.+.|.|||+.+.+.
T Consensus 157 ~~lH~~~IiHrDLKP~NILl~~~--~~vkL~DFGls~~~~ 194 (496)
T PTZ00283 157 HHVHSKHMIHRDIKSANILLCSN--GLVKLGDFGFSKMYA 194 (496)
T ss_pred HHHHhCCEecCCCCHHHEEEeCC--CCEEEEecccCeecc
Confidence 44678899999999999999864 899999999987664
No 290
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=92.71 E-value=0.15 Score=52.65 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+..++++. ..+...|++|+|.+|.||+++.+ ++++.|.|||+...+.
T Consensus 114 ~~qi~~al-~~lH~~~i~h~dl~p~nil~~~~-~~~~~l~dfg~~~~~~ 160 (268)
T cd06624 114 TKQILEGL-KYLHDNQIVHRDIKGDNVLVNTY-SGVVKISDFGTSKRLA 160 (268)
T ss_pred HHHHHHHH-HHHHHCCEeecCCCHHHEEEcCC-CCeEEEecchhheecc
Confidence 33444433 34568999999999999999764 4789999999987764
No 291
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=92.70 E-value=0.16 Score=52.08 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.+. .-+...|+.|+|.+|.|+++..+ +.+.+.|||....+..
T Consensus 103 ~~~~~~i~~~l-~~lH~~~i~H~dl~p~ni~i~~~--~~~kl~d~g~~~~~~~ 152 (256)
T cd05114 103 LSMCQDVCEGM-EYLERNSFIHRDLAARNCLVSST--GVVKVSDFGMTRYVLD 152 (256)
T ss_pred HHHHHHHHHHH-HHHHHCCccccccCcceEEEcCC--CeEEECCCCCccccCC
Confidence 34455555444 45678999999999999999764 7899999998877643
No 292
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=92.69 E-value=0.091 Score=52.73 Aligned_cols=40 Identities=33% Similarity=0.565 Sum_probs=31.2
Q ss_pred HHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccC
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLS 71 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~ 71 (729)
+-+...+|+|.|.+|.||+.--+- ..++-|||||+.+.+-
T Consensus 125 EyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~ 165 (341)
T KOG1163|consen 125 EYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR 165 (341)
T ss_pred HHHHhhccccccCCccceeeccccccceEEEEeccchhhhc
Confidence 445689999999999999975320 2479999999988753
No 293
>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the
Probab=92.68 E-value=0.17 Score=51.40 Aligned_cols=48 Identities=38% Similarity=0.464 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+..++.+. ..+...|++|+|.+|.||++..+ +++.|.|||+...+...
T Consensus 99 ~~qi~~~l-~~lh~~~~~H~~l~p~ni~~~~~--~~~~l~d~~~~~~~~~~ 146 (250)
T cd05123 99 AAEIVLAL-EYLHSLGIIYRDLKPENILLDAD--GHIKLTDFGLAKELSSE 146 (250)
T ss_pred HHHHHHHH-HHHHHCCceecCCCcceEEEcCC--CcEEEeecCcceecccC
Confidence 33444433 45568999999999999999865 79999999999877554
No 294
>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=92.68 E-value=0.16 Score=52.22 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 103 ~~~~i~~~l-~~lH~~~i~H~dlk~~nili~~~--~~~kl~dfg~~~~~~~ 150 (262)
T cd05058 103 FGLQVAKGM-EYLASKKFVHRDLAARNCMLDES--FTVKVADFGLARDIYD 150 (262)
T ss_pred HHHHHHHHH-HHHHhCCccccccCcceEEEcCC--CcEEECCccccccccC
Confidence 344444443 34568899999999999999864 7899999999876654
No 295
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=92.67 E-value=0.12 Score=53.79 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
..++..+++++ .-+...|++|+|.||.||++..+ +.+.|.|||....+....
T Consensus 101 ~~~~~~i~~~l-~~LH~~~i~H~dl~p~nili~~~--~~~~l~df~~~~~~~~~~ 152 (283)
T cd05118 101 KSYLYQLLQGL-AFCHSHGILHRDLKPENLLINTE--GVLKLADFGLARSFGSPV 152 (283)
T ss_pred HHHHHHHHHHH-HHHHHCCeeecCcCHHHEEECCC--CcEEEeeeeeeEecCCCc
Confidence 44566666655 56678999999999999999864 789999999998887654
No 296
>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex
Probab=92.66 E-value=0.13 Score=53.65 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||....+.
T Consensus 105 ~~~~i~~~l-~~lh~~~i~H~~l~p~nill~~~--~~~~l~dfg~~~~~~ 151 (284)
T cd07860 105 YLFQLLQGL-AFCHSHRVLHRDLKPQNLLINTE--GAIKLADFGLARAFG 151 (284)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCHHHEEECCC--CCEEEeeccchhhcc
Confidence 344444433 44568999999999999999865 899999999876554
No 297
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=92.62 E-value=0.12 Score=53.56 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..++..++.+. .-+...|++|+|.+|.|+++..+ +.+.|.|||....+...
T Consensus 101 ~~~~~ql~~~l-~~lh~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~~ 151 (274)
T cd06609 101 AFILREVLLGL-EYLHEEGKIHRDIKAANILLSEE--GDVKLADFGVSGQLTST 151 (274)
T ss_pred HHHHHHHHHHH-HHHHhCCcccCCCCHHHEEECCC--CCEEEcccccceeeccc
Confidence 33444555544 34678899999999999999864 89999999999888764
No 298
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=92.62 E-value=0.12 Score=53.76 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+..++.++ .-+...|++|+|.+|+||++..+ +.+.+.|||+...+...
T Consensus 107 ~~~l~~~l-~~lh~~~i~h~dl~p~Ni~i~~~--~~~~l~dfg~~~~~~~~ 154 (277)
T cd06641 107 LREILKGL-DYLHSEKKIHRDIKAANVLLSEH--GEVKLADFGVAGQLTDT 154 (277)
T ss_pred HHHHHHHH-HHHccCCeecCCCCHHhEEECCC--CCEEEeecccceecccc
Confidence 33333333 44568999999999999999764 88999999998877653
No 299
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=92.62 E-value=0.16 Score=53.22 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. ..+...|++|+|.+|.||+++.+ ++.+.|.|||+...+.
T Consensus 115 ~~~qi~~~L-~~LH~~~i~H~dl~~~nil~~~~-~~~~kl~dfg~~~~~~ 162 (295)
T cd07837 115 FMYQLLKGV-AHCHKHGVMHRDLKPQNLLVDKQ-KGLLKIADLGLGRAFS 162 (295)
T ss_pred HHHHHHHHH-HHHHHCCeeecCCChHHEEEecC-CCeEEEeecccceecC
Confidence 344444433 45578999999999999999873 4789999999987664
No 300
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=92.61 E-value=0.18 Score=55.45 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 218 ~~~~qi~~~l-~~lH~~~ivH~Dlkp~Nill~~~--~~~kl~DfG~a~~~~~ 266 (375)
T cd05104 218 SFSYQVAKGM-SFLASKNCIHRDLAARNILLTHG--RITKICDFGLARDIRN 266 (375)
T ss_pred HHHHHHHHHH-HHHHHCCeeccCCchhhEEEECC--CcEEEecCccceeccC
Confidence 3445555444 45578999999999999999864 6889999999887654
No 301
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=92.55 E-value=0.13 Score=54.21 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+.. -+.. .|++|+|.+|.||+++. ++.+.|.|||+...+..
T Consensus 119 i~~~i~~~l~-~lH~~~~i~H~dl~p~nill~~--~~~~kL~dfg~~~~~~~ 167 (296)
T cd06618 119 MTVAIVKALH-YLKEKHGVIHRDVKPSNILLDA--SGNVKLCDFGISGRLVD 167 (296)
T ss_pred HHHHHHHHHH-HHHhhCCEecCCCcHHHEEEcC--CCCEEECccccchhccC
Confidence 4444444442 2233 59999999999999975 48999999999877653
No 302
>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho
Probab=92.53 E-value=0.12 Score=53.34 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+. .-+...|++|.|.+|+||+++.+ +.+.+.|||....+.
T Consensus 110 ~~~~~i~~al-~~LH~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~ 157 (264)
T cd06653 110 RYTRQILQGV-SYLHSNMIVHRDIKGANILRDSA--GNVKLGDFGASKRIQ 157 (264)
T ss_pred HHHHHHHHHH-HHHHhCCEecCCCCHHHEEEcCC--CCEEECccccccccc
Confidence 3455555544 45578999999999999999754 889999999988764
No 303
>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.
Probab=92.53 E-value=0.13 Score=53.63 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+.
T Consensus 105 ~~~qi~~~l-~~lH~~~i~h~dl~p~ni~~~~~--~~~~l~d~g~~~~~~ 151 (284)
T cd07836 105 FTYQLLKGI-AFCHENRVLHRDLKPQNLLINKR--GELKLADFGLARAFG 151 (284)
T ss_pred HHHHHHHHH-HHHHHCCeeeCCCCHHHEEECCC--CcEEEeecchhhhhc
Confidence 444455444 45578899999999999999864 899999999987654
No 304
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=92.47 E-value=0.12 Score=54.59 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|.+|+||++..+ +.+.|.|||+...+..
T Consensus 120 i~~~l~~al-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~ 167 (311)
T cd07866 120 YMLQLLEGI-NYLHENHILHRDIKAANILIDNQ--GILKIADFGLARPYDG 167 (311)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHHEEECCC--CCEEECcCccchhccC
Confidence 444444433 44578999999999999999865 8999999999987654
No 305
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=92.47 E-value=0.19 Score=52.85 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||+++.+ ++++.+.|||+...+.
T Consensus 107 ~~~qi~~aL-~~LH~~~i~H~dl~p~nill~~~-~~~~kl~dfg~~~~~~ 154 (294)
T PLN00009 107 YLYQILRGI-AYCHSHRVLHRDLKPQNLLIDRR-TNALKLADFGLARAFG 154 (294)
T ss_pred HHHHHHHHH-HHHHhCCeeCCCCCcceEEEECC-CCEEEEcccccccccC
Confidence 444555444 56678999999999999999864 3678999999987654
No 306
>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning
Probab=92.46 E-value=0.15 Score=53.08 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++..++.++ ..+...|++|+|.+|.||++..+ +.+-|.|||....+....
T Consensus 105 ~~~~i~~~l-~~LH~~~i~H~dl~~~ni~~~~~--~~~kl~d~g~~~~~~~~~ 154 (288)
T cd07833 105 YIWQLLQAI-AYCHSHNIIHRDIKPENILVSES--GVLKLCDFGFARALRARP 154 (288)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CCEEEEeeecccccCCCc
Confidence 444444443 45578999999999999999864 899999999988876654
No 307
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.44 E-value=0.16 Score=61.45 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++. .-+...|++|+|.+|.||+++.+ |++.++|||+...+
T Consensus 118 I~~QIa~AL-~yLHs~GIIHRDLKPeNILLd~d--g~vKLiDFGLAk~i 163 (932)
T PRK13184 118 IFHKICATI-EYVHSKGVLHRDLKPDNILLGLF--GEVVILDWGAAIFK 163 (932)
T ss_pred HHHHHHHHH-HHHHHCCccccCCchheEEEcCC--CCEEEEecCcceec
Confidence 344444433 45678899999999999999865 89999999999877
No 308
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=92.43 E-value=0.15 Score=52.38 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|..|.||++..+ +.+.|.|||....+..
T Consensus 108 ~~~~l~~~l-~~LH~~~i~H~dl~p~nili~~~--~~~~l~dfg~~~~~~~ 155 (261)
T cd05072 108 FSAQIAEGM-AYIERKNYIHRDLRAANVLVSES--LMCKIADFGLARVIED 155 (261)
T ss_pred HHHHHHHHH-HHHHHCCeeccccchhhEEecCC--CcEEECCCccceecCC
Confidence 444454444 45678999999999999999864 8899999999988754
No 309
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=92.43 E-value=0.16 Score=53.37 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+++..++++. ..+...|+.|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 123 ~~~~~l~~~l-~~lH~~~i~H~dikp~nili~~~--~~~~L~Dfg~~~~~~ 170 (288)
T cd05061 123 QMAAEIADGM-AYLNAKKFVHRDLAARNCMVAHD--FTVKIGDFGMTRDIY 170 (288)
T ss_pred HHHHHHHHHH-HHHHhCCCcCCCCChheEEEcCC--CcEEECcCCcccccc
Confidence 3455555544 45578999999999999999864 899999999987654
No 310
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=92.42 E-value=0.11 Score=54.67 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++..+ .-+...|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 122 ~~~~qi~~~l-~~LH~~~ivH~dlkp~Nill~~~--~~~kL~dfg~~~~~~~ 170 (292)
T cd06658 122 TVCLSVLRAL-SYLHNQGVIHRDIKSDSILLTSD--GRIKLSDFGFCAQVSK 170 (292)
T ss_pred HHHHHHHHHH-HHHHHCCEeecCCCHHHEEEcCC--CCEEEccCcchhhccc
Confidence 3444444443 45578899999999999999765 8999999998876543
No 311
>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=92.41 E-value=0.16 Score=52.17 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+..++++ +..+...|++|+|.+|.||+++.+ +.+.|.|||....+...
T Consensus 106 ~~~i~~~-l~~lh~~~i~h~dl~~~nil~~~~--~~~~l~d~~~~~~~~~~ 153 (258)
T cd05578 106 ICEIVLA-LEYLHSKGIIHRDIKPDNILLDEQ--GHVHITDFNIATKVTPD 153 (258)
T ss_pred HHHHHHH-HHHHHhCCeeccCCCHHHeEEcCC--CCEEEeecccccccCCC
Confidence 3334443 346678999999999999999865 89999999998877654
No 312
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=92.41 E-value=0.17 Score=52.85 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+...
T Consensus 105 ~~~~i~~~l-~~LH~~~i~h~~l~p~ni~~~~~--~~~~l~dfg~~~~~~~~ 153 (286)
T cd07846 105 YLFQILRGI-EFCHSHNIIHRDIKPENILVSQS--GVVKLCDFGFARTLAAP 153 (286)
T ss_pred HHHHHHHHH-HHHHHCCccccCCCHHHEEECCC--CcEEEEeeeeeeeccCC
Confidence 344444433 34568999999999999999865 89999999998876543
No 313
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=92.40 E-value=0.16 Score=52.66 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..+++++ .-+...|++|+|.+|.||++..+ +.+.|.|||....+...
T Consensus 112 ~~~~l~~~l-~~lH~~~~~H~dl~p~nili~~~--~~~~l~d~g~~~~~~~~ 160 (270)
T cd05056 112 YSYQLSTAL-AYLESKRFVHRDIAARNVLVSSP--DCVKLGDFGLSRYLEDE 160 (270)
T ss_pred HHHHHHHHH-HHHHhCCeeccccChheEEEecC--CCeEEccCceeeecccc
Confidence 455555555 45578999999999999999864 78999999998877654
No 314
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=92.39 E-value=0.12 Score=53.00 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. .-+...|++|+|.+|.||+++++ +.+.|.|||+...+...
T Consensus 107 ~~~ql~~al-~~lh~~~i~h~~l~p~ni~~~~~--~~~~l~df~~~~~~~~~ 155 (267)
T cd06610 107 VLKEVLKGL-EYLHSNGQIHRDIKAGNILLGED--GSVKIADFGVSASLADG 155 (267)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHhEEEcCC--CCEEEcccchHHHhccC
Confidence 344455444 45579999999999999999864 78999999998777654
No 315
>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as
Probab=92.39 E-value=0.14 Score=54.39 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. .-+...|++|+|.+|.||++..+ .++++.|.|||+.+.+..
T Consensus 113 i~~qi~~aL-~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~ 164 (317)
T cd07867 113 LLYQILDGI-HYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS 164 (317)
T ss_pred HHHHHHHHH-HHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCC
Confidence 444444433 34568899999999999999532 247899999999987653
No 316
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=92.36 E-value=0.2 Score=54.21 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||++..+ +.+.+.|||+...+.
T Consensus 184 ~~~qi~~al-~~lH~~~i~H~dikp~Nil~~~~--~~~kl~dfg~~~~~~ 230 (343)
T cd05103 184 YSFQVAKGM-EFLASRKCIHRDLAARNILLSEN--NVVKICDFGLARDIY 230 (343)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCccCeEEEcCC--CcEEEEecccccccc
Confidence 444555544 34578899999999999999864 799999999987753
No 317
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=92.36 E-value=0.16 Score=53.42 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++.. -+...|++|+|.+|.||+++.+ |.+.|.|||+...+..
T Consensus 105 ~~~~~qi~~al~-~lH~~~i~H~dl~p~nill~~~--~~~~l~dfg~~~~~~~ 154 (298)
T cd07841 105 KSYMLMTLRGLE-YLHSNWILHRDLKPNNLLIASD--GVLKLADFGLARSFGS 154 (298)
T ss_pred HHHHHHHHHHHH-HHHhCCeeecCCChhhEEEcCC--CCEEEccceeeeeccC
Confidence 345555555543 4578999999999999999864 8999999999887654
No 318
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=92.34 E-value=0.18 Score=53.54 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
..++..++++. .-+...|++|+|..|.|++++.+ +++.|.|||+...
T Consensus 127 ~~~~~qi~~al-~~LH~~gi~H~dlkp~Nili~~~--~~~kl~dfg~~~~ 173 (303)
T cd05088 127 LHFAADVARGM-DYLSQKQFIHRDLAARNILVGEN--YVAKIADFGLSRG 173 (303)
T ss_pred HHHHHHHHHHH-HHHHhCCccccccchheEEecCC--CcEEeCccccCcc
Confidence 34455555544 45578999999999999999865 7999999998754
No 319
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=92.32 E-value=0.16 Score=53.25 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||+...++
T Consensus 107 ~~~qi~~~l-~~lH~~~ivH~dlkp~Nil~~~~--~~~~l~Dfg~~~~~~ 153 (285)
T cd05605 107 YAAEITCGL-EDLHRERIVYRDLKPENILLDDY--GHIRISDLGLAVEIP 153 (285)
T ss_pred HHHHHHHHH-HHHHHCCcEecCCCHHHEEECCC--CCEEEeeCCCceecC
Confidence 344444443 45678999999999999999764 789999999988764
No 320
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=92.29 E-value=0.15 Score=53.43 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ +++.|.|||+...++
T Consensus 107 ~~~qi~~~l-~~lH~~~iiH~dikp~Nil~~~~--~~~~l~Dfg~~~~~~ 153 (285)
T cd05630 107 YAAEICCGL-EDLHQERIVYRDLKPENILLDDH--GHIRISDLGLAVHVP 153 (285)
T ss_pred HHHHHHHHH-HHHHhCCEEeCCCCHHHEEECCC--CCEEEeeccceeecC
Confidence 334444433 44568999999999999999764 789999999887654
No 321
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=92.27 E-value=0.12 Score=53.83 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++..++++. ..+...|++|+|..|.||++..+ +.+.|.|||....+....
T Consensus 106 i~~~i~~~l-~~lh~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~~~~ 155 (277)
T cd06917 106 IIREVLVAL-KYIHKVGVIHRDIKAANILVTNT--GNVKLCDFGVAALLNQNS 155 (277)
T ss_pred HHHHHHHHH-HHHHhCCcccCCcCHHHEEEcCC--CCEEEccCCceeecCCCc
Confidence 344444443 56678999999999999999864 899999999988776543
No 322
>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p
Probab=92.27 E-value=0.14 Score=54.48 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|.+|.||++..+ .++++.|.|||+...++
T Consensus 113 i~~qi~~al-~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~ 163 (317)
T cd07868 113 LLYQILDGI-HYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317)
T ss_pred HHHHHHHHH-HHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccC
Confidence 344444433 34468899999999999999532 24789999999987664
No 323
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=92.26 E-value=0.13 Score=54.57 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|.+|+||+++.+ +++.|.|||+...+..
T Consensus 113 ~~~qi~~~l-~~lH~~~i~H~dl~p~nil~~~~--~~~kL~dfg~~~~~~~ 160 (309)
T cd07845 113 LMLQLLRGL-QYLHENFIIHRDLKVSNLLLTDK--GCLKIADFGLARTYGL 160 (309)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHHEEECCC--CCEEECccceeeecCC
Confidence 344444433 45668999999999999999864 8999999999987754
No 324
>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co
Probab=92.25 E-value=0.15 Score=53.28 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. ..+...|++|+|..|.||+++.+ +++.|.|||+...+..
T Consensus 100 ~~~~~ql~~~l-~~lH~~~i~H~di~p~nili~~~--~~~kl~dfg~~~~~~~ 149 (278)
T cd05606 100 RFYAAEIILGL-EHMHNRFVVYRDLKPANILLDEH--GHVRISDLGLACDFSK 149 (278)
T ss_pred HHHHHHHHHHH-HHHHHCCEEcCCCCHHHEEECCC--CCEEEccCcCccccCc
Confidence 33445555443 45578899999999999999864 7999999999876653
No 325
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=92.21 E-value=0.18 Score=52.00 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC---CCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP---PHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~---~g~lvllDfG~v~~l~~ 72 (729)
++..++.++ .-+...|++|+|.+|.||+++.+. ...+.|.|||++..+..
T Consensus 111 ~~~~l~~~l-~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~ 163 (269)
T cd05044 111 ICLDVAKGC-VYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYK 163 (269)
T ss_pred HHHHHHHHH-HHHHhCCcccCCCChheEEEecCCCCCCcceEECCccccccccc
Confidence 344444433 345688999999999999998751 12799999999987643
No 326
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=92.21 E-value=0.19 Score=51.51 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||....+..
T Consensus 98 ~~~~~qi~~~l-~~lh~~~i~H~di~p~nili~~~--~~~kl~df~~~~~~~~ 147 (257)
T cd05060 98 KELAHQVAMGM-AYLESKHFVHRDLAARNVLLVNR--HQAKISDFGMSRALGA 147 (257)
T ss_pred HHHHHHHHHHH-HHHhhcCeeccCcccceEEEcCC--CcEEeccccccceeec
Confidence 44555555554 34478999999999999999764 8999999999887753
No 327
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=92.19 E-value=0.14 Score=54.78 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...
T Consensus 100 ~~~~qi~~~l-~~LH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~ 145 (318)
T cd05570 100 FYAAEIVLGL-QFLHERGIIYRDLKLDNVLLDSE--GHIKIADFGMCKE 145 (318)
T ss_pred HHHHHHHHHH-HHHHhCCeEccCCCHHHeEECCC--CcEEecccCCCee
Confidence 3445555544 34578999999999999999865 8999999998764
No 328
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=92.14 E-value=0.17 Score=52.71 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=30.6
Q ss_pred HHc-CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 35 YVD-GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 35 f~~-GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
... |++|+|.+|.||+++.+ +++.+.|||+...+..
T Consensus 120 H~~~~i~h~dlkp~nil~~~~--~~~kl~dfg~~~~~~~ 156 (283)
T cd06617 120 HSKLSVIHRDVKPSNVLINRN--GQVKLCDFGISGYLVD 156 (283)
T ss_pred hhcCCeecCCCCHHHEEECCC--CCEEEeeccccccccc
Confidence 444 99999999999999865 8999999999877654
No 329
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=92.11 E-value=0.19 Score=52.81 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++..++.+. ..+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 126 ~~i~~~i~~al-~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~dfg~a~~~~ 174 (291)
T cd05094 126 LHIASQIASGM-VYLASQHFVHRDLATRNCLVGAN--LLVKIGDFGMSRDVY 174 (291)
T ss_pred HHHHHHHHHHH-HHHHhCCeeecccCcceEEEccC--CcEEECCCCcccccC
Confidence 44555566555 45679999999999999999864 799999999887654
No 330
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=92.09 E-value=0.15 Score=52.67 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|.|.+|.||++..+ +++.|.|||+...+..
T Consensus 111 ~~~~i~~~l-~~lH~~~i~H~dlkp~nili~~~--~~~~l~dfg~~~~~~~ 158 (267)
T cd06645 111 VSRETLQGL-YYLHSKGKMHRDIKGANILLTDN--GHVKLADFGVSAQITA 158 (267)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCHHHEEECCC--CCEEECcceeeeEccC
Confidence 344444444 44578899999999999999764 7899999999877653
No 331
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=92.07 E-value=0.18 Score=51.45 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..+++++ .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+...
T Consensus 107 ~~~~i~~~l-~~lH~~~i~H~dl~~~ni~~~~~--~~~kl~d~~~~~~~~~~ 155 (258)
T cd06632 107 YTRQILLGL-EYLHDRNTVHRDIKGANILVDTN--GVVKLADFGMAKQVVEF 155 (258)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEccCccceecccc
Confidence 444555544 34578999999999999999865 89999999998877554
No 332
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=92.07 E-value=0.21 Score=52.70 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
++..++++. ..+...|++|+|.+|.||++..+ +.+.|.|||+...
T Consensus 124 i~~qi~~al-~~lH~~~ivH~dlkp~Nill~~~--~~~kl~dfg~~~~ 168 (297)
T cd05089 124 FASDVATGM-QYLSEKQFIHRDLAARNVLVGEN--LASKIADFGLSRG 168 (297)
T ss_pred HHHHHHHHH-HHHHHCCcccCcCCcceEEECCC--CeEEECCcCCCcc
Confidence 444444443 56678999999999999999764 7899999998753
No 333
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=92.05 E-value=0.2 Score=51.98 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+ +.-+...|++|.|.+|.||++..+ ++++.+.|||+...++.
T Consensus 114 ~~~qi~~~-l~~lH~~~i~H~dl~p~nil~~~~-~~~~~l~dfg~~~~~~~ 162 (267)
T PHA03390 114 IIRQLVEA-LNDLHKHNIIHNDIKLENVLYDRA-KDRIYLCDYGLCKIIGT 162 (267)
T ss_pred HHHHHHHH-HHHHHhCCeeeCCCCHHHEEEeCC-CCeEEEecCccceecCC
Confidence 33344443 356678999999999999999875 23899999999887654
No 334
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=92.04 E-value=0.18 Score=52.30 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++.+. ..+...|++|.|..|.||+++.+ +.+.|.|||+...+
T Consensus 126 ~~~~~i~~~l-~~lH~~~i~h~dlkp~nili~~~--~~~kl~d~g~~~~~ 172 (280)
T cd05049 126 QIAVQIASGM-VYLASQHFVHRDLATRNCLVGYD--LVVKIGDFGMSRDV 172 (280)
T ss_pred HHHHHHHHHH-HHHhhCCeeccccccceEEEcCC--CeEEECCcccceec
Confidence 3455555544 55678899999999999999875 89999999998754
No 335
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=92.03 E-value=0.19 Score=53.50 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=28.9
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.|++|+|.+|.||+++.+ +.+.+.|||+.+.+.
T Consensus 119 ~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~ 151 (308)
T cd06615 119 HKIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLI 151 (308)
T ss_pred CCEEECCCChHHEEEecC--CcEEEccCCCccccc
Confidence 589999999999999864 889999999877654
No 336
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=92.02 E-value=0.14 Score=55.05 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. +-+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 124 ~~~ql~~aL-~~LH~~~i~H~dl~~~nill~~~--~~~kl~dfg~~~~~~ 170 (335)
T PTZ00024 124 ILLQILNGL-NVLHKWYFMHRDLSPANIFINSK--GICKIADFGLARRYG 170 (335)
T ss_pred HHHHHHHHH-HHHHhCCeecccccHHHeEECCC--CCEEECCccceeecc
Confidence 444444433 45568999999999999999864 789999999998765
No 337
>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins. Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha
Probab=92.01 E-value=0.16 Score=51.60 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++++. ..+...|+.|+|.+|.|++++.+ +.+.++|||....+.
T Consensus 89 ~~~~ql~~~l-~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~df~~~~~~~ 136 (237)
T cd05576 89 RWAAEMVVAL-DALHREGIVCRDLNPNNILLDDR--GHIQLTYFSRWSEVE 136 (237)
T ss_pred HHHHHHHHHH-HHHHhCCeeccCCCHHHEEEcCC--CCEEEecccchhccc
Confidence 3444445443 45678999999999999999865 789999999775543
No 338
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=91.99 E-value=0.17 Score=51.71 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
.++..+++.+ ..+...|++|+|.+|.||+++.+ +.+-+.|||....+....
T Consensus 105 ~~~~~l~~~l-~~lh~~~i~h~dl~p~ni~~~~~--~~~kl~d~~~~~~~~~~~ 155 (256)
T cd08221 105 WYLFQIVSAV-SYIHKAGILHRDIKTLNIFLTKA--GLIKLGDFGISKILGSEY 155 (256)
T ss_pred HHHHHHHHHH-HHHHhCCccccCCChHhEEEeCC--CCEEECcCcceEEccccc
Confidence 3444455544 45578999999999999999865 789999999887765543
No 339
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=91.95 E-value=0.2 Score=51.93 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..+++++ .-+...|++|+|.+|.|+++..+ +.+.|.|||+....
T Consensus 104 ~~~~qi~~al-~~lH~~~i~H~dlkp~nil~~~~--~~~kL~dfg~~~~~ 150 (269)
T cd05087 104 RMACEIALGL-LHLHKNNFIHSDLALRNCLLTAD--LTVKIGDYGLSHNK 150 (269)
T ss_pred HHHHHHHHHH-HHHHHCCEeccccCcceEEEcCC--CcEEECCccccccc
Confidence 3455555554 34578899999999999999864 78999999987644
No 340
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=91.94 E-value=0.18 Score=52.68 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=29.7
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.|++|+|.+|.||++..+ +++.|.|||+...+..
T Consensus 122 ~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~ 155 (286)
T cd06622 122 HNIIHRDVKPTNVLVNGN--GQVKLCDFGVSGNLVA 155 (286)
T ss_pred CCEeeCCCCHHHEEECCC--CCEEEeecCCcccccC
Confidence 599999999999999864 8999999999877643
No 341
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=91.92 E-value=0.27 Score=54.29 Aligned_cols=52 Identities=13% Similarity=0.345 Sum_probs=41.7
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEec--ccccccCHHHHHHHHHHHHHHHhCCH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDF--GLTKKLSSSMKQALAKMFFAAAEGDH 90 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDf--G~v~~l~~~~r~~l~~L~~a~~~~D~ 90 (729)
...+.|+|.|||||++.++ .+.+||| +.+|...=+.=.-++.|+.+.+..+.
T Consensus 222 ~~~l~HgDl~~gni~~~~~---~~~viD~E~a~~G~~~~Dlg~~lanl~~~~~~~~~ 275 (401)
T PRK09550 222 AEALLHGDLHTGSIFVTEE---ETKVIDPEFAFYGPIGFDIGTFIANLLLNYCSQPG 275 (401)
T ss_pred CCceeeccCCcccEEeeCC---CcEEEeccccccCChHHHHHHHHHHHHHHHhcCcc
Confidence 4568999999999999864 6999998 55567777777777888888877654
No 342
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=91.91 E-value=0.2 Score=52.35 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..+++++ .-+...|++|+|.+|.||++..+ +.+-|.|||+...+..
T Consensus 129 ~~~~i~~~l-~~lH~~~i~H~dlkp~nili~~~--~~~kl~dfg~~~~~~~ 176 (286)
T cd06638 129 ILHEALMGL-QHLHVNKTIHRDVKGNNILLTTE--GGVKLVDFGVSAQLTS 176 (286)
T ss_pred HHHHHHHHH-HHHHhCCccccCCCHHhEEECCC--CCEEEccCCceeeccc
Confidence 444444443 35568899999999999999865 7899999999887754
No 343
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=91.88 E-value=0.19 Score=54.09 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. ..+...|++|+|.+|.|+++..+ +.+.|.|||+...++.
T Consensus 113 ~~~ql~~aL-~~LH~~~iiH~dl~p~Nili~~~--~~~~l~dfg~~~~~~~ 160 (328)
T cd07856 113 FLYQILRGL-KYVHSAGVVHRDLKPSNILINEN--CDLKICDFGLARIQDP 160 (328)
T ss_pred HHHHHHHHH-HHHHhCCcccCCCCHHHEeECCC--CCEEeCccccccccCC
Confidence 444444443 56678999999999999999754 8999999999876543
No 344
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=91.87 E-value=0.19 Score=54.05 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++. ..+...|++|+|..|.||++..+ +.+.|.|||....+..
T Consensus 139 ~~~qi~~al-~~LH~~givH~dlkp~Nill~~~--~~~kL~Dfg~~~~~~~ 186 (334)
T cd05100 139 CAYQVARGM-EYLASQKCIHRDLAARNVLVTED--NVMKIADFGLARDVHN 186 (334)
T ss_pred HHHHHHHHH-HHHHHCCeeccccccceEEEcCC--CcEEECCcccceeccc
Confidence 455555555 34578999999999999999865 7999999999877643
No 345
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=91.86 E-value=0.21 Score=52.46 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|+|..|.||++..+ +++.|.|||+...+.
T Consensus 135 ~~~~i~~al-~~LH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~ 181 (296)
T cd05051 135 MATQIASGM-RYLESLNFVHRDLATRNCLVGKN--YTIKIADFGMSRNLY 181 (296)
T ss_pred HHHHHHHHH-HHHHHcCccccccchhceeecCC--CceEEccccceeecc
Confidence 334444443 34578999999999999999865 899999999887654
No 346
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=91.83 E-value=0.15 Score=55.01 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++++ +..+...|++|+|.+|.||+++.+ +++.|.|||+...+..
T Consensus 111 i~~ql~~a-L~~LH~~~ivH~dlkp~Nill~~~--~~~kl~dfg~~~~~~~ 158 (336)
T cd07849 111 FLYQILRG-LKYIHSANVLHRDLKPSNLLLNTN--CDLKICDFGLARIADP 158 (336)
T ss_pred HHHHHHHH-HHHHHhCCeeccCCCHHHEEECCC--CCEEECcccceeeccc
Confidence 34444444 356789999999999999999864 8999999998877654
No 347
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.78 E-value=0.12 Score=56.72 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 23 VEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 23 a~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.+..++.+++|+. ..|.+|.|.+|.||++..++ +.|-|.|||.....+
T Consensus 118 ~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~-~~~Kl~DFG~s~~~~ 172 (370)
T KOG0583|consen 118 KEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNE-GNLKLSDFGLSAISP 172 (370)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCC-CCEEEeccccccccC
Confidence 3345555555554 78999999999999998642 899999999999885
No 348
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=91.76 E-value=0.16 Score=48.59 Aligned_cols=48 Identities=27% Similarity=0.521 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 24 EEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 24 ~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
..+++.|+-|++ .+...|.|.+|-|+++.++ |.+-|-|||+.+.+.-.
T Consensus 100 ~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~n--gelkladfglarafgip 154 (292)
T KOG0662|consen 100 PEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRN--GELKLADFGLARAFGIP 154 (292)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccC--CcEEecccchhhhcCCc
Confidence 356677777765 5677899999999999875 89999999997765443
No 349
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=91.75 E-value=0.15 Score=53.12 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.++ .-+...|++|+|.+|.||++..+ +.+.|.|||....+.
T Consensus 100 ~~~ql~~~l-~~lH~~~i~H~di~p~Nil~~~~--~~~~l~dfg~~~~~~ 146 (277)
T cd05577 100 YAAQIICGL-EHLHQRRIVYRDLKPENVLLDDH--GNVRISDLGLAVELK 146 (277)
T ss_pred HHHHHHHHH-HHHHhCCcccCCCCHHHEEECCC--CCEEEccCcchhhhc
Confidence 344555444 45578999999999999999865 799999999876654
No 350
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=91.74 E-value=0.19 Score=52.45 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 127 ~~~qi~~al-~~LH~~~i~H~dlkp~nil~~~~--~~~kL~dfg~~~~~~ 173 (280)
T cd05092 127 IASQIASGM-VYLASLHFVHRDLATRNCLVGQG--LVVKIGDFGMSRDIY 173 (280)
T ss_pred HHHHHHHHH-HHHHHCCeecccccHhhEEEcCC--CCEEECCCCceeEcC
Confidence 334444443 45578999999999999999864 789999999987654
No 351
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=91.72 E-value=0.21 Score=52.44 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+...|++|+|.+|.||++..+ +.+.|.|||....+...
T Consensus 111 i~~qi~~aL-~~LH~~~i~H~dl~p~nili~~~--~~~~l~d~g~~~~~~~~ 159 (293)
T cd07843 111 LMLQLLSGV-AHLHDNWILHRDLKTSNLLLNNR--GILKICDFGLAREYGSP 159 (293)
T ss_pred HHHHHHHHH-HHHHHCCeeeccCCHHHEEECCC--CcEEEeecCceeeccCC
Confidence 444444443 45578999999999999999864 89999999998877653
No 352
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=91.67 E-value=0.18 Score=51.40 Aligned_cols=50 Identities=28% Similarity=0.334 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..+++++ .-+...|++|+|.+|+||++..+ ++.+.|.|||+...++..
T Consensus 106 ~~~~i~~~l-~~lh~~~i~h~dl~~~nil~~~~-~~~~~l~d~~~~~~~~~~ 155 (256)
T cd08220 106 FFVQILLAL-HHVHTKLILHRDLKTQNILLDKH-KMVVKIGDFGISKILSSK 155 (256)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC-CCEEEEccCCCceecCCC
Confidence 334444444 35567899999999999999764 345789999999987643
No 353
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=91.64 E-value=0.23 Score=51.99 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..+++++. -+...|++|+|.+|.||++..+ +.+.|.|||+...+..
T Consensus 110 i~~~i~~~L~-~lH~~~i~H~dl~~~nil~~~~--~~~~l~dfg~~~~~~~ 157 (287)
T cd06621 110 IAESVLKGLS-YLHSRKIIHRDIKPSNILLTRK--GQVKLCDFGVSGELVN 157 (287)
T ss_pred HHHHHHHHHH-HHHHCCcccCCCCHHHEEEecC--CeEEEeeccccccccc
Confidence 4444444443 3468899999999999999864 7899999999876643
No 354
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=91.61 E-value=0.18 Score=53.25 Aligned_cols=50 Identities=30% Similarity=0.394 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||....+...
T Consensus 123 ~i~~qi~~al-~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~~ 172 (310)
T cd07865 123 KVMKMLLNGL-YYIHRNKILHRDMKAANILITKD--GILKLADFGLARAFSLS 172 (310)
T ss_pred HHHHHHHHHH-HHHHHCCeeccCCCHHHEEECCC--CcEEECcCCCcccccCC
Confidence 3444444443 56678999999999999999864 78999999999877543
No 355
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.60 E-value=0.17 Score=50.35 Aligned_cols=43 Identities=23% Similarity=0.469 Sum_probs=34.5
Q ss_pred HHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 27 TRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 27 ~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++.|+.|++ .-|.+|.|.+|-|++++.. ..++-|||||+..-.
T Consensus 134 IryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~-~rkLrlIDWGLAEFY 183 (338)
T KOG0668|consen 134 IRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHE-LRKLRLIDWGLAEFY 183 (338)
T ss_pred HHHHHHHHHHHHhHHHhcCcccccCCcceeeechh-hceeeeeecchHhhc
Confidence 456666665 6799999999999999875 568999999986433
No 356
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=91.59 E-value=0.22 Score=51.17 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.+. .-+...|++|+|.+|.||+++.+ +.+-|.|||....+..
T Consensus 107 ~~~~~~i~~al-~~lH~~~i~h~dl~~~nilv~~~--~~~kl~d~g~~~~~~~ 156 (261)
T cd05148 107 IDMACQVAEGM-AYLEEQNSIHRDLAARNILVGED--LVCKVADFGLARLIKE 156 (261)
T ss_pred HHHHHHHHHHH-HHHHHCCeeccccCcceEEEcCC--ceEEEccccchhhcCC
Confidence 33555555554 45578999999999999999865 7899999999987754
No 357
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=91.56 E-value=0.16 Score=53.91 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=47.9
Q ss_pred CceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHH----HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 2 DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIY----VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 2 ~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif----~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
||-+++++-. ..|.=++.+...++...++.+- +.+.+|+|.+|.|+||... |.|=|=|||.-+.|...
T Consensus 161 DgGSLd~~~k--~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNsk--GeVKicDFGVS~~lvnS 232 (364)
T KOG0581|consen 161 DGGSLDDILK--RVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSK--GEVKICDFGVSGILVNS 232 (364)
T ss_pred CCCCHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccC--CCEEeccccccHHhhhh
Confidence 4545554433 2344445555556666655443 4899999999999999874 89999999998887665
No 358
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=91.55 E-value=0.21 Score=52.91 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++.+. ..+...|++|+|.+|.||++..+ +.+.+.|||+...+..
T Consensus 145 ~i~~~i~~~l-~~lH~~~ivH~dlkp~Nil~~~~--~~~~l~dfg~~~~~~~ 193 (302)
T cd05055 145 SFSYQVAKGM-AFLASKNCIHRDLAARNVLLTHG--KIVKICDFGLARDIMN 193 (302)
T ss_pred HHHHHHHHHH-HHHHHCCeehhhhccceEEEcCC--CeEEECCCcccccccC
Confidence 3444555544 45678899999999999999754 7899999999886653
No 359
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=91.53 E-value=0.22 Score=51.12 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||......
T Consensus 100 ~~i~~qi~~aL-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~ 148 (260)
T cd05611 100 KQYIAEVVLGV-EDLHQRGIIHRDIKPENLLIDQT--GHLKLTDFGLSRNGL 148 (260)
T ss_pred HHHHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CcEEEeecccceecc
Confidence 34455555544 45678999999999999999864 789999999876543
No 360
>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]
Probab=91.50 E-value=0.16 Score=53.47 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
|+|.++..+.. -.|+..|-..++.+..+ +-.+|++|+|-+-=||+|..| +++++|||=+|-+.+.+.-+-|.
T Consensus 190 v~g~Pl~~v~~----v~d~~~ly~~lm~~Iv~-la~~GlIHgDFNEFNimv~dd--~~i~vIDFPQmvS~sh~nA~~YF- 261 (465)
T KOG2268|consen 190 VDGYPLRQVRH----VEDPPTLYDDLMGLIVR-LANHGLIHGDFNEFNIMVKDD--DKIVVIDFPQMVSTSHPNAEYYF- 261 (465)
T ss_pred hcccceeeeee----cCChHHHHHHHHHHHHH-HHHcCceecccchheeEEecC--CCEEEeechHhhccCCCccceee-
Confidence 46666666533 35678888888877665 479999999999999999965 79999999999999988766653
Q ss_pred HHHHHHhCCHHHHHHHHH-HcCC
Q 004807 81 MFFAAAEGDHVALLSAFA-EMGL 102 (729)
Q Consensus 81 L~~a~~~~D~~~~~~~l~-~lG~ 102 (729)
.+|.+=+.+.+. ++|+
T Consensus 262 ------dRDv~Ci~~fFrKkf~Y 278 (465)
T KOG2268|consen 262 ------DRDVECIRAFFRKKFGY 278 (465)
T ss_pred ------cccHHHHHHHHHHhcCC
Confidence 466655555544 3344
No 361
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=91.48 E-value=0.19 Score=52.96 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++..++.+. ..+...|++|+|.+|.||+++.+ +.+.|.|||....+...
T Consensus 121 i~~qi~~aL-~~LH~~~i~H~dl~p~nili~~~--~~~kl~dfg~~~~~~~~ 169 (302)
T cd07864 121 FMKQLLEGL-NYCHKKNFLHRDIKCSNILLNNK--GQIKLADFGLARLYNSE 169 (302)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHHEEECCC--CcEEeCcccccccccCC
Confidence 344444443 45578899999999999999864 89999999998877654
No 362
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=91.44 E-value=0.16 Score=53.73 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.+. .-+...|++|+|.+|.||+++.+ +.+.+.|||....+...
T Consensus 120 ~i~~ql~~aL-~~LH~~gi~H~dLkp~Nill~~~--~~~kl~dfg~~~~~~~~ 169 (296)
T cd06654 120 AVCRECLQAL-EFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE 169 (296)
T ss_pred HHHHHHHHHH-HHHHHCCcccCCCCHHHEEEcCC--CCEEECccccchhcccc
Confidence 3444555544 34478899999999999999764 79999999988876544
No 363
>PLN02236 choline kinase
Probab=91.38 E-value=0.17 Score=55.02 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.0
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
...+.|.|+|+|||++..+ ++++.||||-+++-=++-+
T Consensus 199 ~~~~cH~Dl~~~Nil~~~~-~~~~~lID~Eya~~~~~~~ 236 (344)
T PLN02236 199 EIGFCHNDLQYGNIMIDEE-TRAITIIDYEYASYNPVAY 236 (344)
T ss_pred CceEEeCCCCcCcEEEeCC-CCcEEEEeehhccccchHH
Confidence 3478999999999999853 4689999999998666543
No 364
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=91.38 E-value=0.24 Score=54.51 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|..|.||+++.+ +.+.|.|||+...+..
T Consensus 216 ~i~~qi~~aL-~yLH~~giiHrDLkp~Nil~~~~--~~~kL~DfGla~~~~~ 264 (374)
T cd05106 216 RFSSQVAQGM-DFLASKNCIHRDVAARNVLLTDG--RVAKICDFGLARDIMN 264 (374)
T ss_pred HHHHHHHHHH-HHHHHCCEEeccCchheEEEeCC--CeEEEeeceeeeeccC
Confidence 3444444443 34568899999999999999864 7899999999876643
No 365
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=91.36 E-value=0.17 Score=52.85 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=28.2
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.|++|+|.+|.||++..+ +.+.|.|||+...+
T Consensus 127 ~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~ 158 (288)
T cd06616 127 LKIIHRDVKPSNILLDRN--GNIKLCDFGISGQL 158 (288)
T ss_pred CCeeccCCCHHHEEEccC--CcEEEeecchhHHh
Confidence 499999999999999864 78999999987654
No 366
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=91.33 E-value=0.19 Score=53.04 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.++ .-+...|++|+|.+|.|++++.+ +.+.|.|||....+...
T Consensus 119 ~i~~~l~~al-~~LH~~gi~H~dL~p~Nili~~~--~~~kL~dfg~~~~~~~~ 168 (293)
T cd06647 119 AVCRECLQAL-EFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE 168 (293)
T ss_pred HHHHHHHHHH-HHHHhCCEeeccCCHHHEEEcCC--CCEEEccCcceeccccc
Confidence 3444555444 45578999999999999999865 78999999988766554
No 367
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=91.22 E-value=0.29 Score=51.30 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
.++..++.+. ..+...|++|+|..|.||++..+ +.+.|.|||+...+.
T Consensus 124 ~~~~ql~~aL-~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~~ 171 (288)
T cd05093 124 HIAQQIAAGM-VYLASQHFVHRDLATRNCLVGEN--LLVKIGDFGMSRDVY 171 (288)
T ss_pred HHHHHHHHHH-HHHHhCCeeecccCcceEEEccC--CcEEeccCCcccccc
Confidence 3455555554 45678999999999999999864 889999999987664
No 368
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=91.18 E-value=0.24 Score=50.54 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
++|++.|++..-. +.....+|.|.+|-||++++ +-+|.+=|||...+|.+..+
T Consensus 126 R~iMrqlfegVey-lHa~~IVHRDLKpENILldd--n~~i~isDFGFa~~l~~Gek 178 (411)
T KOG0599|consen 126 RRIMRQLFEGVEY-LHARNIVHRDLKPENILLDD--NMNIKISDFGFACQLEPGEK 178 (411)
T ss_pred HHHHHHHHHHHHH-HHHhhhhhcccChhheeecc--ccceEEeccceeeccCCchh
Confidence 4555555555433 35778999999999999975 37999999999999987543
No 369
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=91.17 E-value=0.26 Score=53.05 Aligned_cols=50 Identities=30% Similarity=0.463 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.++..++.+. ..+...|++|+|.+|.||+++.+ |.+-|.|||+...+...
T Consensus 111 ~i~~qi~~~L-~~LH~~~i~H~dl~p~nill~~~--~~~kl~d~g~~~~~~~~ 160 (337)
T cd07852 111 YIMYQLLKAL-KYIHSGNVIHRDLKPSNILLNSD--CRVKLADFGLARSLSEL 160 (337)
T ss_pred HHHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CcEEEeeccchhccccc
Confidence 3555555544 45678999999999999999865 89999999998877543
No 370
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=91.15 E-value=0.24 Score=51.41 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|..|.||+++.+ +.+.|.|||+...+..
T Consensus 124 ~~~~i~~~l-~~lH~~~i~H~di~p~nill~~~--~~~kl~dfg~~~~~~~ 171 (277)
T cd05032 124 MAAEIADGM-AYLAAKKFVHRDLAARNCMVAED--LTVKIGDFGMTRDIYE 171 (277)
T ss_pred HHHHHHHHH-HHHHhCCccccccChheEEEcCC--CCEEECCcccchhhcc
Confidence 444454444 45678999999999999999865 8899999999876543
No 371
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=91.03 E-value=0.15 Score=52.59 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=53.3
Q ss_pred ecCCHHhHhhcCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807 5 RLNDCESLEAFGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 76 (729)
Q Consensus 5 ki~d~~~l~~~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~ 76 (729)
+|+|+.+++.....-.+|+..|-+.. ++-+....-+|.|.+.|||++..| |---|-|||..|.|++.+-.
T Consensus 114 SiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~--G~AKLADFGVAGQLTDTMAK 185 (502)
T KOG0574|consen 114 SISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTD--GIAKLADFGVAGQLTDTMAK 185 (502)
T ss_pred cHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEccc--chhhhhhccccchhhhhHHh
Confidence 56778777776677777776665544 333445566899999999999876 77788999999999987644
No 372
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=91.00 E-value=0.32 Score=50.59 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|++|+|.+|.|++++.+ +++.|.|||....+.
T Consensus 108 ~~~ql~~~l-~~lh~~~i~h~dl~p~nili~~~--~~~~l~d~g~~~~~~ 154 (280)
T cd06611 108 VCRQMLEAL-NFLHSHKVIHRDLKAGNILLTLD--GDVKLADFGVSAKNK 154 (280)
T ss_pred HHHHHHHHH-HHHHHCCcccCCCChhhEEECCC--CCEEEccCccchhhc
Confidence 444444433 34567899999999999999764 899999999866553
No 373
>PLN02756 S-methyl-5-thioribose kinase
Probab=90.98 E-value=0.25 Score=54.51 Aligned_cols=51 Identities=22% Similarity=0.426 Sum_probs=38.7
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEe--cccccccCHHHHHHHHHHHHHHHhCC
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLD--FGLTKKLSSSMKQALAKMFFAAAEGD 89 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllD--fG~v~~l~~~~r~~l~~L~~a~~~~D 89 (729)
...++|+|.|||||++.++ +..+|| |..+|...=+.=.-+..++.+...++
T Consensus 229 ~~~L~HGDl~~g~i~~~~~---~~~~id~ef~~~g~~~~d~g~~~~~~~~~~~~~~ 281 (418)
T PLN02756 229 AQALVHGDLHTGSVMVTPD---STQVIDPEFAFYGPMGFDIGAFLGNLILAYFAQD 281 (418)
T ss_pred ccceeecCCCCCcEEEcCC---CceEecchhhccCchHHhHHHHHhhhHHHHhhCc
Confidence 4678999999999999865 588888 45666666665556677777777664
No 374
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=90.95 E-value=0.31 Score=50.67 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-CCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-HRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|++|+|.+|.||+++.+++ ..+.|.|||+...+.
T Consensus 121 ~~~qi~~~l-~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~ 170 (277)
T cd05036 121 CARDVAKGC-KYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY 170 (277)
T ss_pred HHHHHHHHH-HHHHHCCEeecccchheEEEeccCCCcceEeccCccccccC
Confidence 444555444 4557889999999999999986422 358899999998774
No 375
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=90.72 E-value=0.26 Score=50.71 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +..+.|.|||....++.
T Consensus 108 ~~~ql~~al-~~LH~~~i~H~~i~~~nil~~~~-~~~~~l~dfg~~~~~~~ 156 (268)
T cd06630 108 YTEQLLRGL-SYLHENQIIHRDVKGANLLIDST-GQRLRIADFGAAARLAA 156 (268)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC-CCEEEEccccccccccc
Confidence 345555544 45678899999999999999754 23589999999988764
No 376
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=90.59 E-value=0.61 Score=47.65 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004807 18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF 97 (729)
Q Consensus 18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l 97 (729)
+...+-+.+++-+-+++-..|.+|||.-.=||++. + |.+++||||+...+.-.. ...++.+|..-+...+
T Consensus 167 e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~--~~p~iID~~QaV~~~hp~-------a~e~L~RDv~Ni~~fF 236 (268)
T COG1718 167 EAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-D--GEPYIIDVSQAVTIDHPN-------AFEFLERDVRNIARFF 236 (268)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-C--CeEEEEECccccccCCCc-------hHHHHHHHHHHHHHHH
Confidence 45666777777777777779999999999999997 3 799999999998887543 3345578888888888
Q ss_pred HHcCCc
Q 004807 98 AEMGLR 103 (729)
Q Consensus 98 ~~lG~~ 103 (729)
...|+-
T Consensus 237 ~r~gv~ 242 (268)
T COG1718 237 RRKGVE 242 (268)
T ss_pred HHcCCC
Confidence 888874
No 377
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=90.57 E-value=0.38 Score=49.83 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++.+. .-+...|++|+|..|.||++..+ +.+.|.|||+...
T Consensus 116 ~~~~~i~~al-~~lH~~~i~H~dikp~nili~~~--~~~kl~dfgl~~~ 161 (270)
T cd05047 116 HFAADVARGM-DYLSQKQFIHRDLAARNILVGEN--YVAKIADFGLSRG 161 (270)
T ss_pred HHHHHHHHHH-HHHHHCCEeecccccceEEEcCC--CeEEECCCCCccc
Confidence 3444444333 45668899999999999999864 7899999998753
No 378
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=90.57 E-value=0.33 Score=53.93 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||+...+..
T Consensus 241 ~~~~qi~~aL-~~LH~~~ivH~dikp~Nill~~~--~~~kL~DfGla~~~~~ 289 (400)
T cd05105 241 SFTYQVARGM-EFLASKNCVHRDLAARNVLLAQG--KIVKICDFGLARDIMH 289 (400)
T ss_pred HHHHHHHHHH-HHHHhCCeeCCCCChHhEEEeCC--CEEEEEeCCcceeccc
Confidence 3444555444 45578999999999999999864 7899999999876543
No 379
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=90.55 E-value=0.14 Score=52.12 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=31.6
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
....+|.|.+|.||++++- |.|-|-|||.+|.|-+.
T Consensus 186 ~lkiIHRDvKPSNILldr~--G~vKLCDFGIcGqLv~S 221 (361)
T KOG1006|consen 186 ELKIIHRDVKPSNILLDRH--GDVKLCDFGICGQLVDS 221 (361)
T ss_pred HhhhhhccCChhheEEecC--CCEeeecccchHhHHHH
Confidence 6678999999999999864 89999999999987554
No 380
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=90.54 E-value=0.28 Score=51.27 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=29.6
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.|++|+|..|.||++..+ +++.+.|||+...+..
T Consensus 123 ~~i~H~dl~p~nil~~~~--~~~~l~d~gl~~~~~~ 156 (284)
T cd06620 123 HRIMHRDIKPSNILVNSR--GQIKLCDFGVSGELIN 156 (284)
T ss_pred cCeeccCCCHHHEEECCC--CcEEEccCCcccchhh
Confidence 689999999999999764 8999999999876643
No 381
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=90.46 E-value=0.27 Score=52.99 Aligned_cols=50 Identities=24% Similarity=0.386 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++.++ ..+...|++|+|.+|.||+++.+ +.+.|.|||+...+..
T Consensus 111 ~~i~~qi~~aL-~~LH~~~i~H~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~~ 160 (337)
T cd07858 111 QYFLYQLLRGL-KYIHSANVLHRDLKPSNLLLNAN--CDLKICDFGLARTTSE 160 (337)
T ss_pred HHHHHHHHHHH-HHHHhCCEecCCCCHHHEEEcCC--CCEEECcCccccccCC
Confidence 33455555554 46678999999999999999764 8999999998877654
No 382
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=90.39 E-value=0.5 Score=47.65 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHH
Q 004807 33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQA 77 (729)
Q Consensus 33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~ 77 (729)
-+|..-..++|=|.||+++.+| |++.-||+|+|-.-.+++|.-
T Consensus 139 aVfDi~inNaDRk~GhiL~~~d--g~l~~IDHGl~f~~~~klrtv 181 (253)
T TIGR03843 139 AVFDALVNNADRKGGHVLPGPD--GRVWGVDHGVCFHVEPKLRTV 181 (253)
T ss_pred hhheeeeecCCCCCCcEeEcCC--CcEEEecCceecCCCCccccc
Confidence 3577788899999999999875 899999999999987776664
No 383
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=90.38 E-value=0.47 Score=46.18 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCe--EEEecccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--ILLDFGLT 67 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~l--vllDfG~v 67 (729)
.+++++-+...++ ...+..|+|.--.||++.++ ++++ +|||||+-
T Consensus 117 ~~~~~iG~~igkl-H~ndiiHGDLTTSNill~~~-~~~~~~~lIdfgls 163 (229)
T KOG3087|consen 117 ELARRIGELIGKL-HDNDIIHGDLTTSNILLRSD-GNQITPILIDFGLS 163 (229)
T ss_pred HHHHHHHHHHHHh-hhCCeecccccccceEEecC-CCcCceEEEeecch
Confidence 5666666666554 78999999999999999986 4565 99999974
No 384
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=90.36 E-value=0.25 Score=53.38 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+..++.+. .-+...|++|+|.+|.||+++.+ ++.+.+.|||+...+..
T Consensus 120 ~~qi~~aL-~~LH~~givH~dikp~Nili~~~-~~~~kl~dfg~~~~~~~ 167 (342)
T cd07854 120 MYQLLRGL-KYIHSANVLHRDLKPANVFINTE-DLVLKIGDFGLARIVDP 167 (342)
T ss_pred HHHHHHHH-HHHHhCCcccCCCCHHHEEEcCC-CceEEECCcccceecCC
Confidence 33444433 23457999999999999999764 46789999999987643
No 385
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=90.28 E-value=0.4 Score=49.67 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.++..++++. .-+...|++|+|.+|.||+++.+ +.+.|.|||....
T Consensus 103 ~~~~~i~~al-~~lH~~~i~H~dikp~nil~~~~--~~~~l~Dfg~~~~ 148 (268)
T cd05086 103 RMACEIAAGV-THMHKHNFLHSDLALRNCFLTSD--LTVKVGDYGIGPS 148 (268)
T ss_pred HHHHHHHHHH-HHHHHCCeeccCCccceEEEcCC--ccEEecccccccc
Confidence 3444444443 34578999999999999999764 8899999998654
No 386
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=90.21 E-value=0.36 Score=49.91 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
..++..++.+. ..+...|++|+|.+|.||++..+ +.+.+.|||.....
T Consensus 110 ~~~~~~i~~al-~~lH~~~iiH~dikp~nili~~~--~~~~l~dfg~~~~~ 157 (266)
T cd05064 110 MGMLPGLASGM-KYLSEMGYVHKGLAAHKVLVNSD--LVCKISGFRRLQED 157 (266)
T ss_pred HHHHHHHHHHH-HHHHHCCEeeccccHhhEEEcCC--CcEEECCCcccccc
Confidence 34455555444 46689999999999999999764 78999999976554
No 387
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=90.20 E-value=0.44 Score=50.74 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.+. ..+...|++|+|.+|.||++..+ +.+-|.|||+....
T Consensus 126 ~~~qi~~al-~~LH~~gi~H~dl~p~nili~~~--~~~kL~dfg~~~~~ 171 (313)
T cd06633 126 ITHGALQGL-AYLHSHNMIHRDIKAGNILLTEP--GQVKLADFGSASKS 171 (313)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCChhhEEECCC--CCEEEeecCCCccc
Confidence 444555544 55578999999999999999864 78999999987654
No 388
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=90.12 E-value=0.36 Score=49.33 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+++..++.+. ..+...|++|+|.+|.||++..+ +.+.+.|||+...+...
T Consensus 105 ~~~~~l~~~l-~~lh~~~i~h~~l~~~nil~~~~--~~~~l~d~~~~~~~~~~ 154 (256)
T cd08218 105 DWFVQICLAL-KHVHDRKILHRDIKSQNIFLTKD--GTIKLGDFGIARVLNST 154 (256)
T ss_pred HHHHHHHHHH-HHHHhCCEecCCCCHHHEEEcCC--CCEEEeeccceeecCcc
Confidence 3445555554 34678999999999999999764 78999999999887653
No 389
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=90.08 E-value=0.4 Score=56.03 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEec---CCCCCeEEEecccccccCHH
Q 004807 17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK---DPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~---d~~g~lvllDfG~v~~l~~~ 73 (729)
+++..+...++. -+..+...+.+|.|.+|.||+|.- ++..+..|=|||++++++..
T Consensus 606 i~~~~~l~q~~~-GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~ 664 (903)
T KOG1027|consen 606 IDPISVLSQIAS-GLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGG 664 (903)
T ss_pred ccHHHHHHHHHH-HHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCC
Confidence 666666666666 345567899999999999999986 33347889999999999864
No 390
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=90.04 E-value=0.33 Score=50.10 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|++|+|.+|.||+++.+ +++-|.|||....+.
T Consensus 111 ~~~qi~~~l-~~LH~~~i~H~~l~p~nil~~~~--~~~~l~dfg~~~~~~ 157 (266)
T cd06651 111 YTRQILEGM-SYLHSNMIVHRDIKGANILRDSA--GNVKLGDFGASKRLQ 157 (266)
T ss_pred HHHHHHHHH-HHHHhCCeeeCCCCHHHEEECCC--CCEEEccCCCccccc
Confidence 445555544 44578999999999999999754 899999999987664
No 391
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=90.01 E-value=0.2 Score=52.06 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=41.0
Q ss_pred hcCCCHHHHHHHHHHHHHH--HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 14 AFGVNKQKVVEEITRAYAH--QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 14 ~~~~d~~~la~~l~~~~~~--qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.+|++.+.+-..+....-. -...++.+|.|.+|-||+|+.. |.+-|-|||..+.|++
T Consensus 95 p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~--gvvKLCDFGFAR~L~~ 153 (396)
T KOG0593|consen 95 PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQN--GVVKLCDFGFARTLSA 153 (396)
T ss_pred cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecC--CcEEeccchhhHhhcC
Confidence 3466655544433333221 1236889999999999999975 8999999999999984
No 392
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=89.85 E-value=0.29 Score=59.19 Aligned_cols=39 Identities=28% Similarity=0.558 Sum_probs=32.0
Q ss_pred HHHHHHcCccccCCCCCCeEEecCC-----CCCeEEEecccccc
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDP-----PHRPILLDFGLTKK 69 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~-----~g~lvllDfG~v~~ 69 (729)
.+++...|.+|||.+|-|++++... .--|-|||||.---
T Consensus 807 ve~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD 850 (974)
T KOG1166|consen 807 VEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID 850 (974)
T ss_pred HHHHHhcceecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence 6788999999999999999999631 22489999998543
No 393
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=89.85 E-value=0.21 Score=52.20 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.3
Q ss_pred CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
=+.|.|.||+|++.++. |+|.||||=-.+-=++
T Consensus 154 v~cH~Dl~~~N~l~t~~--~~l~LIDWEyAg~~D~ 186 (269)
T COG0510 154 VPCHNDLNPGNLLLTDK--GGLFLIDWEYAGLNDP 186 (269)
T ss_pred eeecCCCCccceEEcCC--CcEEEEecccCCCccH
Confidence 57899999999999863 7999999976665444
No 394
>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.
Probab=89.83 E-value=0.43 Score=49.51 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++.+. +.+...|++|+|.+|.||+++. +.+.|.|||....+.
T Consensus 105 ~~~qi~~~L-~~LH~~~i~H~dl~p~ni~l~~---~~~kl~dfg~~~~~~ 150 (282)
T cd07831 105 YMYQLLKSL-DHMHRNGIFHRDIKPENILIKD---DILKLADFGSCRGIY 150 (282)
T ss_pred HHHHHHHHH-HHHHHCCceecccCHHHEEEcC---CCeEEEecccccccc
Confidence 444444433 5667899999999999999975 799999999987764
No 395
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=89.77 E-value=0.35 Score=51.33 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=33.4
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..+...|++|+|.+|.||++..+ +.+.+.|||....+.+
T Consensus 129 ~~LH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~ 167 (308)
T cd06634 129 AYLHSHNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAP 167 (308)
T ss_pred HHHHhCCcccCCCCHHhEEECCC--CcEEECCcccceeecC
Confidence 55578999999999999999764 8999999999877654
No 396
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=89.70 E-value=0.37 Score=50.16 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|+|..|.||+++.+ +++.+.|||+.+.+.+
T Consensus 122 i~~~i~~~l-~~LH~~~i~H~di~p~nil~~~~--~~~kl~d~g~~~~~~~ 169 (280)
T cd05043 122 MAIQIACGM-SYLHKRGVIHKDIAARNCVIDEE--LQVKITDNALSRDLFP 169 (280)
T ss_pred HHHHHHHHH-HHHHHCCEeecccCHhhEEEcCC--CcEEECCCCCcccccC
Confidence 444455444 45578999999999999999865 8999999999887643
No 397
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=89.69 E-value=0.35 Score=50.59 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=31.7
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.-+...|++|.|.+|.||+++.+ |++.|.|||.....
T Consensus 117 ~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~ 153 (291)
T cd07844 117 AYCHQRRVLHRDLKPQNLLISER--GELKLADFGLARAK 153 (291)
T ss_pred HHHHhCCeecccCCHHHEEEcCC--CCEEECcccccccc
Confidence 45568899999999999999764 89999999988654
No 398
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=89.68 E-value=0.58 Score=49.31 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCC---CCeEEEeccccccc
Q 004807 19 KQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPP---HRPILLDFGLTKKL 70 (729)
Q Consensus 19 ~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~---g~lvllDfG~v~~l 70 (729)
.+.++...+... .+-+....++-.|.+|-||||-+-++ .-|-+|||||.+..
T Consensus 123 vKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y 179 (449)
T KOG1165|consen 123 VKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY 179 (449)
T ss_pred HHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence 344444444433 45567888999999999999976211 24889999999875
No 399
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.62 E-value=0.52 Score=51.47 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=40.1
Q ss_pred cCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 15 FGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 15 ~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.|.+-..||..|-++. +.=+...|.+|.|.++||||+..| |.|-|=|||-...|-.
T Consensus 121 ~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~d--G~VkLadFgvsa~l~~ 178 (516)
T KOG0582|consen 121 DGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSD--GTVKLADFGVSASLFD 178 (516)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCC--CcEEEcCceeeeeecc
Confidence 3444444444444433 334568999999999999999865 8999999998776654
No 400
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=89.60 E-value=0.45 Score=49.15 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++..++.+. ..+...|++|.|..|.||++..+ +.+.+.|||....+.
T Consensus 116 ~~~~~~i~~~l-~~lH~~~i~H~dikp~nili~~~--~~~kl~dfg~~~~~~ 164 (273)
T cd05074 116 VRFMIDIASGM-EYLSSKNFIHRDLAARNCMLNEN--MTVCVADFGLSKKIY 164 (273)
T ss_pred HHHHHHHHHHH-HHHHhCCEeecccchhhEEEcCC--CCEEECccccccccc
Confidence 34455555444 45578999999999999999754 789999999888764
No 401
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.59 E-value=0.45 Score=53.28 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=51.9
Q ss_pred CCceecCCHHhHhhcCCCHHHHH---HHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 1 MDGIRLNDCESLEAFGVNKQKVV---EEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 1 i~G~ki~d~~~l~~~~~d~~~la---~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
++|-.++|+..... .+-.+|| +..+.+ ++-+...|..|.|.+--||+...| |++=|-|||.|..++++..
T Consensus 352 m~ggsLTDvVt~~~--~~E~qIA~Icre~l~a-L~fLH~~gIiHrDIKSDnILL~~~--g~vKltDFGFcaqi~~~~~ 424 (550)
T KOG0578|consen 352 MEGGSLTDVVTKTR--MTEGQIAAICREILQG-LKFLHARGIIHRDIKSDNILLTMD--GSVKLTDFGFCAQISEEQS 424 (550)
T ss_pred cCCCchhhhhhccc--ccHHHHHHHHHHHHHH-HHHHHhcceeeeccccceeEeccC--CcEEEeeeeeeeccccccC
Confidence 35667888865332 3334443 333332 455678999999999999999986 8999999999999999874
No 402
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.56 E-value=0.22 Score=60.03 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=45.8
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcC
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG 101 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG 101 (729)
+..|..-|++|.|.+|.|+|++.. |.|=|=|||-|-.++.+ +-.+-..|+-.-|+-. .++|..+|
T Consensus 188 ldslH~mgyVHRDiKPDNvLld~~--GHikLADFGsClkm~~d---G~V~s~~aVGTPDYIS-PEvLqs~~ 252 (1317)
T KOG0612|consen 188 LDSLHSMGYVHRDIKPDNVLLDKS--GHIKLADFGSCLKMDAD---GTVRSSVAVGTPDYIS-PEVLQSQG 252 (1317)
T ss_pred HHHHHhccceeccCCcceeEeccc--CcEeeccchhHHhcCCC---CcEEeccccCCCCccC-HHHHHhhc
Confidence 456679999999999999999875 89999999999888742 2333344555555421 33444444
No 403
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=89.53 E-value=0.35 Score=52.02 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. .-+...|++|+|.+|.||++..+ |++.|.|||+...+..
T Consensus 110 ~~i~~qi~~aL-~~LH~~~ivH~dlkp~Nil~~~~--~~~kl~dfg~~~~~~~ 159 (334)
T cd07855 110 RYFLYQLLRGL-KYIHSANVIHRDLKPSNLLVNED--CELRIGDFGMARGLSS 159 (334)
T ss_pred HHHHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CcEEecccccceeecc
Confidence 34445555443 34568999999999999999865 8999999999876543
No 404
>PTZ00284 protein kinase; Provisional
Probab=89.11 E-value=0.42 Score=54.24 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCC--------------CCeEEEecccccc
Q 004807 22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPP--------------HRPILLDFGLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~--------------g~lvllDfG~v~~ 69 (729)
++..++.+ +.-+.. .|++|+|.+|.||++..++. +++-|.|||.+..
T Consensus 236 i~~qi~~a-L~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~ 297 (467)
T PTZ00284 236 IIFQTGVA-LDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCD 297 (467)
T ss_pred HHHHHHHH-HHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCcccc
Confidence 34444443 234444 59999999999999986421 2588999997643
No 405
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.05 E-value=0.24 Score=50.00 Aligned_cols=51 Identities=29% Similarity=0.389 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+++.+-|+. -+.-|.+....|.|.+|.|++++.| |-|.|-|||+.+.++..
T Consensus 127 kk~Mk~Lm~-GL~~iHr~kilHRDmKaaNvLIt~d--gilklADFGlar~fs~~ 177 (376)
T KOG0669|consen 127 KKVMKGLMN-GLYYIHRNKILHRDMKAANVLITKD--GILKLADFGLARAFSTS 177 (376)
T ss_pred HHHHHHHHH-HHHHHHHhhHHhhcccHhhEEEcCC--ceEEeeccccccceecc
Confidence 334443333 3455678889999999999999876 89999999999877643
No 406
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=88.67 E-value=0.57 Score=52.12 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
..++..++.+. .-+...|++|+|.+|.||++..+ +.+.|.|||+...+.
T Consensus 242 ~~~~~qi~~aL-~~LH~~~ivHrdlkp~NiLl~~~--~~~kL~DfGla~~~~ 290 (401)
T cd05107 242 VGFSYQVANGM-EFLASKNCVHRDLAARNVLICEG--KLVKICDFGLARDIM 290 (401)
T ss_pred HHHHHHHHHHH-HHHhcCCcCcccCCcceEEEeCC--CEEEEEecCcceecc
Confidence 34455555554 44678999999999999999864 789999999988653
No 407
>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=88.22 E-value=0.68 Score=47.80 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-----CCeEEEeccccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-----HRPILLDFGLTKKL 70 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-----g~lvllDfG~v~~l 70 (729)
..++..++++. .-+...|++|+|.+|.||++..++. +.+.+.|||....+
T Consensus 108 ~~i~~qi~~~l-~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~ 162 (262)
T cd05077 108 FKVAKQLASAL-SYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITV 162 (262)
T ss_pred HHHHHHHHHHH-HHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccc
Confidence 34555666553 4557889999999999999976421 12788999987654
No 408
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=88.16 E-value=0.23 Score=49.83 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=23.4
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
...|-|.|.|||||++... ++++.||||=.++.=+..
T Consensus 142 ~~v~cHnDl~~~Nil~~~~-~~~~~lIDfEya~~n~~~ 178 (211)
T PF01633_consen 142 PLVFCHNDLNPGNILINNK-DGEVKLIDFEYAGYNDRA 178 (211)
T ss_dssp GEEEE-S--SGGGEEETSS-SSCEEE--GTT-EEEEHH
T ss_pred CceEeeccCccccEEeccC-CCeEEEecHHHHhhccch
Confidence 3578899999999999222 479999999888765543
No 409
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=87.88 E-value=0.39 Score=51.93 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.6
Q ss_pred ccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
|-|.|+|||||++.++ ++++.||||...+-=++-+
T Consensus 184 ~CHnDl~~~NiL~~~~-~~~l~lID~EYag~nd~~f 218 (330)
T PLN02421 184 FAHNDLLSGNLMLNED-EGKLYFIDFEYGSYSYRGY 218 (330)
T ss_pred EEECCCCcccEEEeCC-CCcEEEEcccccCCCccHH
Confidence 7899999999999754 4689999999988776654
No 410
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=87.85 E-value=0.78 Score=48.62 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
++..++++. .-+...|++|.|.+|.||+++.+ |.+.+.|||....+.
T Consensus 106 ~~~~l~~~L-~~LH~~~ivH~dlk~~Nili~~~--~~~kl~d~~~~~~~~ 152 (314)
T cd08216 106 ILKDVLNAL-DYIHSKGFIHRSVKASHILLSGD--GKVVLSGLRYSVSMI 152 (314)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCCcceEEEecC--CceEEecCccceeec
Confidence 344444443 34568999999999999999864 889999999887664
No 411
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.68 E-value=0.69 Score=56.33 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++++.-. +...|++|.|.+|.||++... |++-++|||++...
T Consensus 85 i~~qi~~al~~-lH~~gIvHrDlKP~NiLl~~~--~~~k~~d~~~~~~~ 130 (793)
T PLN00181 85 VFRQIVEIVNA-AHSQGIVVHNVRPSCFVMSSF--NHVSFIESASCSDS 130 (793)
T ss_pred HHHHHHHHHHH-HHhCCeeeccCCchhEEEccc--CcEEEeeccccCcc
Confidence 44455554433 468999999999999999753 67777777776544
No 412
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=87.54 E-value=0.4 Score=49.71 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=36.6
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~ 74 (729)
++-|...+.++.|.+|-|||++.+ |.|-+.|||..++++.++
T Consensus 157 leylH~~~iiYRDLKPENiLlD~~--G~iKitDFGFAK~v~~rT 198 (355)
T KOG0616|consen 157 LEYLHSLDIIYRDLKPENLLLDQN--GHIKITDFGFAKRVSGRT 198 (355)
T ss_pred HHHHHhcCeeeccCChHHeeeccC--CcEEEEeccceEEecCcE
Confidence 344558899999999999999864 999999999999999873
No 413
>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the
Probab=87.42 E-value=0.51 Score=49.97 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~ 72 (729)
++..++.+. .-+...|++|.|.+|.||+++.++ ++.+.|.|||+...+..
T Consensus 113 i~~qi~~~l-~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~ 164 (316)
T cd07842 113 LLWQILNGV-HYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA 164 (316)
T ss_pred HHHHHHHHH-HHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCC
Confidence 444444433 345688999999999999998621 37899999999887644
No 414
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=87.28 E-value=5.1 Score=46.99 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=25.4
Q ss_pred CccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807 281 SLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN 314 (729)
Q Consensus 281 t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ 314 (729)
..|.-||.-|+||+++. .|+|.++.++.+..
T Consensus 302 ~~~~PGStfKp~t~aaa---Le~g~i~~~~~~~~ 332 (592)
T TIGR03423 302 GVYPPGSTFKPFVALAA---LEEGVITPETRIYC 332 (592)
T ss_pred CccCCccHHHHHHHHHH---HHcCCCCCCcEEEc
Confidence 46999999999997654 48899999888754
No 415
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=86.87 E-value=0.44 Score=47.58 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++.+-+-=+|.||+||+++. +|+++=+|||.+-.-.+
T Consensus 96 ~s~~~YilglgDRh~~NIli~~--~G~v~hIDfg~~~~~~~ 134 (202)
T smart00146 96 YSVITYILGLGDRHNDNIMLDK--TGHLFHIDFGFILGNGP 134 (202)
T ss_pred HHHHHHHhcCCCCCCCcEEEeC--CCCEEEEechhhhCccc
Confidence 3444555567999999999994 69999999999765443
No 416
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=86.21 E-value=1.1 Score=46.51 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-----CCCeEEEeccccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-----PHRPILLDFGLTKKL 70 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-----~g~lvllDfG~v~~l 70 (729)
..++..++++. .-+...|++|+|.+|.||++..++ .+.+.+.|||.....
T Consensus 120 ~~i~~qi~~~l-~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~ 174 (274)
T cd05076 120 ITVAQQLASAL-SYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTA 174 (274)
T ss_pred HHHHHHHHHHH-HHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccc
Confidence 34555555544 455789999999999999997642 124788999976543
No 417
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=85.95 E-value=1 Score=48.29 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
++..++.+. .-+...|++|+|.+|.||++..+ +++.+.|||....+
T Consensus 106 i~~qi~~~L-~~LH~~~iiH~dlkp~Nil~~~~--~~~~l~~~~~~~~~ 151 (327)
T cd08227 106 ILQGVLKAL-DYIHHMGYVHRSVKASHILISVD--GKVYLSGLRSNLSM 151 (327)
T ss_pred HHHHHHHHH-HHHHHCCEecCCCChhhEEEecC--CcEEEcccchhhcc
Confidence 444444443 45578999999999999999865 78999999866543
No 418
>TIGR02904 spore_ysxE spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.
Probab=85.56 E-value=0.45 Score=50.87 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
...|+.|+|+|++|++++.+ +.+.+|||-.+.-
T Consensus 194 ~~~~lcHgD~~~~Nvl~~~~--~~~~iIDfd~~~~ 226 (309)
T TIGR02904 194 WRTVLVHGKLSLSHFLYDET--RGGYFINFEKASF 226 (309)
T ss_pred cceeeeCCCCcHHhEEEcCC--CCEEEEEhhhccc
Confidence 35589999999999999754 7899999987653
No 419
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=85.44 E-value=0.57 Score=47.94 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=23.9
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
=+|-||+||+++.+ +|+++-+|||.+-.
T Consensus 140 lgDRH~~NIli~~~-tG~v~HIDfg~~f~ 167 (235)
T cd05172 140 IGDRHLSNFLVDLE-TGGLVGIDFGHAFG 167 (235)
T ss_pred ccCCCcccEEEECC-CCcEEEEeeHhhhc
Confidence 58999999999864 69999999996643
No 420
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=85.42 E-value=0.82 Score=50.35 Aligned_cols=52 Identities=27% Similarity=0.439 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~ 72 (729)
..++..++++ ++.++..|.+|.|..|-|+++.... +++|.+.|||+...+..
T Consensus 138 ~~~~~~il~a-v~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~ 191 (382)
T KOG0032|consen 138 AGIIRQILEA-VKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP 191 (382)
T ss_pred HHHHHHHHHH-HHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC
Confidence 3344444444 4555789999999999999988642 35899999999999887
No 421
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=85.24 E-value=1.3 Score=45.85 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++.+. .-+...|++|.|..|.|++++.+ +.+.+.|||+....
T Consensus 121 ~~~~~l~~~l-~~LH~~~i~H~dlkp~Nili~~~--~~~~l~~~~~~~~~ 167 (275)
T cd05046 121 ALCTQIALGM-DHLSNARFVHRDLAARNCLVSSQ--REVKVSLLSLSKDV 167 (275)
T ss_pred HHHHHHHHHH-HHhhhcCcccCcCccceEEEeCC--CcEEEccccccccc
Confidence 3444555533 55678999999999999999875 78889999987644
No 422
>PRK10795 penicillin-binding protein 2; Provisional
Probab=85.23 E-value=6.4 Score=46.55 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhccCCCCceEEEEEE-ecceeEEEeeeeecCCC-----------------CCCCC---CCCCccccc
Q 004807 228 SDVEAKLRDFLVELGNDGKILGIQVCAY-KDGEVIIDTSAGMLGRY-----------------DPRPV---QPDSLFPVF 286 (729)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~-~~g~~v~~~~~G~~~~~-----------------~~~p~---~~~t~f~i~ 286 (729)
..+...++..+++.++. -.|++|++= +.|+++.-..+-.-|.. ...|. .....|.-|
T Consensus 253 LTID~~lQ~~ae~~l~~--~~ga~Vvmdp~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nra~~~~y~PG 330 (634)
T PRK10795 253 LTLDLKLQQYIETLLAG--SRAAVVVTDPRTGGILALVSTPSYDPNLFVDGISSKDYSGLLNDPNRPLINRATQGVYPPA 330 (634)
T ss_pred EEECHHHHHHHHHHHhc--CceEEEEEECCCCcEEEEEecCCCChhhhcCCCCHHHHHHHhcCcCcchhhHHhhcCCCCc
Confidence 44455566666655543 235444332 78998876544222211 00111 112469999
Q ss_pred cchHHHHHHHHHHHHHCCCCCccCchh
Q 004807 287 SVTKGITAGMLHWLVDNGKLKLEENIA 313 (729)
Q Consensus 287 SitK~~ta~~v~~lve~G~l~ldd~v~ 313 (729)
|+=|+||+++.+ |+|.++.++.+.
T Consensus 331 StfK~~t~aaaL---e~g~i~~~~~~~ 354 (634)
T PRK10795 331 STVKPYVAVSAL---SAGVITRNTSLF 354 (634)
T ss_pred chHHHHHHHHHH---HcCCCCCCceEE
Confidence 999999988754 899999998874
No 423
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=85.17 E-value=0.89 Score=55.49 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=31.9
Q ss_pred HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
|..-|.+|.|.+|.||+++.+ +.|.+-|||+...+-.
T Consensus 713 IH~~giIHRDLKP~NIFLd~~--~~VKIGDFGLAt~~~~ 749 (1351)
T KOG1035|consen 713 IHDQGIIHRDLKPRNIFLDSR--NSVKIGDFGLATDLKE 749 (1351)
T ss_pred HHhCceeeccCCcceeEEcCC--CCeeecccccchhhhh
Confidence 468899999999999999864 7899999999877543
No 424
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=84.77 E-value=0.64 Score=47.64 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
=+|-||+||+++.. +|+++-+|||.+-.-
T Consensus 143 igDRh~~NIli~~~-tG~~~HIDfg~~~~~ 171 (237)
T cd00892 143 LGDRHGENILFDSN-TGDVVHVDFNCLFDK 171 (237)
T ss_pred cCCCCcccEEEEcC-CCcEEEEehHhhhcc
Confidence 48999999999974 699999999987653
No 425
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=84.51 E-value=0.65 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.601 Sum_probs=23.6
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLT 67 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v 67 (729)
=+|-||+||++..+ +|+++-+|||.+
T Consensus 185 lgDRh~~NIll~~~-tG~v~hiDf~~~ 210 (279)
T cd05171 185 LGDRHANNILIDEK-TAEVVHIDLGIA 210 (279)
T ss_pred cCCCCcccEEEEcC-cCcEEEEechhh
Confidence 48999999999865 699999999998
No 426
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=84.46 E-value=1.6 Score=45.21 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.3
Q ss_pred ccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807 39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 76 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~ 76 (729)
.+|.|.+|+||+++. +|-+-|=|||+-+-|+.++..
T Consensus 149 VmHRDIKPaNIFl~~--~gvvKLGDfGL~r~l~s~~tf 184 (375)
T KOG0591|consen 149 VMHRDIKPANIFLTA--NGVVKLGDFGLGRFLSSKTTF 184 (375)
T ss_pred eeeccCcchheEEcC--CCceeeccchhHhHhcchhHH
Confidence 799999999999986 488899999999988877643
No 427
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=84.28 E-value=0.68 Score=46.88 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=24.9
Q ss_pred cccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 40 FNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 40 fHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
-=+|-||+||+++.. +|+++-+|||.+-.
T Consensus 131 glgDRh~~NIli~~~-~G~~~hIDfg~~~~ 159 (219)
T cd00142 131 GIGDRHPDNIMIDLD-TGKLFHIDFGFIFG 159 (219)
T ss_pred ccCCCCCccEEEECC-CCeEEEEeeHHhhC
Confidence 458999999999984 59999999998753
No 428
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=84.24 E-value=1 Score=55.28 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
-+..+|.+|.|++|-||+++.. |-|-+-|||+...+...
T Consensus 1349 ~LH~~gIVHRDIK~aNI~Ld~~--g~iK~~DFGsa~ki~~~ 1387 (1509)
T KOG4645|consen 1349 YLHEHGIVHRDIKPANILLDFN--GLIKYGDFGSAVKIKNN 1387 (1509)
T ss_pred HHHhcCceecCCCccceeeecC--CcEEeecccceeEecCc
Confidence 3558999999999999999864 78999999999988877
No 429
>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]
Probab=84.15 E-value=1.1 Score=46.84 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC--CCeEEEecc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP--HRPILLDFG 65 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~--g~lvllDfG 65 (729)
+++-..|++..+.| ...++|.|=||-|++++.+.. +++++|||=
T Consensus 185 ~aiwd~Lid~~~~~--~~vlvhRDfh~~NLmw~~~~~g~~rvGvlDFQ 230 (351)
T COG3178 185 EAIWDGLIDSLLAQ--PKVLVHRDFHSRNLMWTADRAGADRVGVLDFQ 230 (351)
T ss_pred HHHHHHHHHHHhcC--CceeeeccccCccceecCCccCCCCCceeehh
Confidence 44444555544444 678999999999999998633 489999994
No 430
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=84.13 E-value=3.1 Score=41.36 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC--CeEEEec-ccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--RPILLDF-GLTKK 69 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g--~lvllDf-G~v~~ 69 (729)
-...+++-|.+-++.++....|.+|+||++....+| ++++||- |.-.-
T Consensus 122 ~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~~~~ 172 (199)
T PF10707_consen 122 ELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGEKEL 172 (199)
T ss_pred HHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceEEEEEeCCCCccc
Confidence 456667788888899999999999999999876444 5999994 44443
No 431
>PHA02988 hypothetical protein; Provisional
Probab=83.76 E-value=1.3 Score=46.33 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
++..++... ..++. .|..|+|..|.||++..+ +.+-+.|||+...++.
T Consensus 127 i~~~i~~~l-~~lH~~~~~~Hrdlkp~nill~~~--~~~kl~dfg~~~~~~~ 175 (283)
T PHA02988 127 MAIDCCKGL-YNLYKYTNKPYKNLTSVSFLVTEN--YKLKIICHGLEKILSS 175 (283)
T ss_pred HHHHHHHHH-HHHHhcCCCCCCcCChhhEEECCC--CcEEEcccchHhhhcc
Confidence 334444433 33444 488999999999999865 8899999999875543
No 432
>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]
Probab=83.75 E-value=1.2 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=30.4
Q ss_pred HHHcCccccCCCCCCeEEecCCCC--CeEEEeccccc
Q 004807 34 IYVDGFFNGDPHPGNFLVSKDPPH--RPILLDFGLTK 68 (729)
Q Consensus 34 if~~GffHaDPHPGNilv~~d~~g--~lvllDfG~v~ 68 (729)
+..+|.-|.|.+-.||++.-|+|+ .+|+=|||||-
T Consensus 357 L~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL 393 (598)
T KOG4158|consen 357 LHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCL 393 (598)
T ss_pred HHHccchhhcccccceEEEecCCCCcEEEEcccceee
Confidence 468999999999999999877555 68999999984
No 433
>PLN02876 acyl-CoA dehydrogenase
Probab=83.62 E-value=0.69 Score=56.47 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=32.1
Q ss_pred cCccccCCCCCCeEEecCCCCC-eEEEecccccccCHHHHHHHH
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHR-PILLDFGLTKKLSSSMKQALA 79 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~-lvllDfG~v~~l~~~~r~~l~ 79 (729)
..++|+|.||||+++.++ +++ +++|||.++..=++..=.++.
T Consensus 225 ~~LvHGD~~~~Nvl~~~~-~~~v~aVLDWE~a~~GdPl~DLa~~ 267 (822)
T PLN02876 225 TGIVHGDFRIDNLVFHPT-EDRVIGILDWELSTLGNQMCDVAYS 267 (822)
T ss_pred cceEecCcccccEEEcCC-CCeEEEEEeeeccccCChHHHHHHH
Confidence 469999999999999864 345 489999998876665544443
No 434
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=83.52 E-value=0.7 Score=48.66 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=25.8
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
=+|-|+||||+++ +|+++=||||.+-...+
T Consensus 143 igDRH~~NILid~--~G~liHIDFG~ilg~~p 172 (289)
T cd00893 143 IKDRHNGNILLDS--DGHIIHIDFGFILDSSP 172 (289)
T ss_pred ccccCCCceEECC--CCCEEEEehHHhhCcCC
Confidence 3899999999986 49999999999876654
No 435
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=83.47 E-value=0.68 Score=47.26 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=22.4
Q ss_pred HHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
+.+=+--+|=||+||++... +|+++=||||++-.
T Consensus 132 ~~yilg~gDRh~~Nili~~~-~g~~~hIDfg~~f~ 165 (235)
T PF00454_consen 132 LDYILGLGDRHPGNILIDKK-TGELIHIDFGFIFG 165 (235)
T ss_dssp HHHHHT-CS--TTTEEE-ET-TSEEEE--HSSCTT
T ss_pred ceEEEeecCCCchhheeccc-cceeeeEEeHHhhh
Confidence 34445579999999999543 69999999999977
No 436
>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]
Probab=83.45 E-value=1.3 Score=46.62 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 17 VNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 17 ~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.|.+.+...+.+.+ .+-+..-|+.|.|..|.||+|..+ +.+-++|||...+-...
T Consensus 115 lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~--~~lKi~dfg~ar~e~~~ 171 (369)
T KOG0665|consen 115 LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSD--CTLKILDFGLARTEDTD 171 (369)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecch--hheeeccchhhcccCcc
Confidence 34455555544443 455678999999999999999875 78999999998876666
No 437
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=83.30 E-value=0.72 Score=48.65 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=25.6
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
=+|-|++|||++. +|+++=||||.+-...+
T Consensus 145 igDRH~~NILi~~--~G~liHIDFG~~fg~~~ 174 (293)
T cd05168 145 IKDRHNGNILIDN--DGHIIHIDFGFMLSNSP 174 (293)
T ss_pred ccccCCCceEEcC--CCCEEEEehHHhhcccc
Confidence 3799999999986 49999999999876544
No 438
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=83.29 E-value=0.72 Score=48.58 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=23.4
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLT 67 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v 67 (729)
=+|-||+||+++.. +|+++-+|||++
T Consensus 185 lgDRH~~NIll~~~-tG~v~HIDfg~~ 210 (280)
T cd05169 185 LGDRHPSNIMIDRL-TGKVIHIDFGDC 210 (280)
T ss_pred ccCCCcceEEEEcC-CCCEEEEecHHH
Confidence 48999999999985 699999999976
No 439
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=83.25 E-value=1.2 Score=45.28 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++..++++. ..+...|++|+|.+|.||+++.+ +..+.+.|||....+..
T Consensus 104 ~~~~~~l~~~l-~~lh~~~i~H~dl~~~nil~~~~-~~~~~l~d~~~~~~~~~ 154 (257)
T cd08225 104 LSWFVQISLGL-KHIHDRKILHRDIKSQNIFLSKN-GMVAKLGDFGIARQLND 154 (257)
T ss_pred HHHHHHHHHHH-HHHHHCCcccccCCHHHEEEcCC-CCeEEecccccchhccC
Confidence 33445555544 45578899999999999999865 23468999998877654
No 440
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=82.90 E-value=1.3 Score=49.37 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHHH
Q 004807 20 QKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 20 ~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~~ 74 (729)
.++-+++..+...||+ ..+.+|+|.+|-|+++.... =.++-|-|||..+-|.++.
T Consensus 659 gRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks 721 (888)
T KOG4236|consen 659 GRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS 721 (888)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence 3455666666666665 67999999999999987531 2379999999999999864
No 441
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=82.81 E-value=0.72 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.2
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|-|+||||++. +|+++=||||.+-
T Consensus 207 igDRH~~NILi~~--~G~~~HIDFG~il 232 (352)
T cd00891 207 IGDRHNDNIMLTK--TGHLFHIDFGHFL 232 (352)
T ss_pred ccccCCCceEECC--CCCEEEEehHHhh
Confidence 4899999999985 5999999999874
No 442
>PRK09902 hypothetical protein; Provisional
Probab=82.37 E-value=3.3 Score=41.55 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
.+.+.+.. .++++...|..|+||.+=||+++.+++-.+.||||=-+++
T Consensus 132 ~il~~va~-~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~ 179 (216)
T PRK09902 132 AMLKAVAL-AFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR 179 (216)
T ss_pred HHHHHHHH-HHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence 44444444 3566799999999999999999864222399999955544
No 443
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=82.16 E-value=0.59 Score=52.83 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 19 KQKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 19 ~~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
|+.+-+.=++.|++||. ..|.+|.|..-|||+++++ -.|=+=|||+..++..+
T Consensus 112 rk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~--~~VKIgDFGLAt~le~~ 171 (592)
T KOG0575|consen 112 RKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNEN--MNVKIGDFGLATQLEYD 171 (592)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCc--CcEEecccceeeeecCc
Confidence 45556666777777765 7899999999999999864 57888899999999843
No 444
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=81.82 E-value=0.92 Score=46.02 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.4
Q ss_pred ccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
+-=+|-||+||+++.. +|+++-+|||.+-.
T Consensus 133 lglgDRh~~NIli~~~-tG~v~hIDf~~~~~ 162 (222)
T cd05164 133 LGLGDRHLDNILIDRE-TGEVVHIDFGCIFE 162 (222)
T ss_pred hccCCCCCceEEEECC-CCcEEEEccHHhhc
Confidence 3458999999999984 69999999998743
No 445
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.77 E-value=2 Score=48.88 Aligned_cols=50 Identities=28% Similarity=0.357 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.-++...+++. .-+.....+|.|.+.|||+++-| |.|-|-|||.......
T Consensus 133 qvvc~q~ldAL-n~LHs~~iIHRDLKAGNiL~Tld--GdirLADFGVSAKn~~ 182 (1187)
T KOG0579|consen 133 QVVCYQVLDAL-NWLHSQNIIHRDLKAGNILLTLD--GDIRLADFGVSAKNKS 182 (1187)
T ss_pred HHHHHHHHHHH-HHHhhcchhhhhccccceEEEec--CcEeeecccccccchh
Confidence 34555555553 33568899999999999999987 8999999998766544
No 446
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=81.26 E-value=1 Score=48.02 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.9
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|-||+||+++.. +|+++-+|||++-
T Consensus 213 lgDRh~~NIli~~~-tG~v~hiDf~~~f 239 (307)
T cd05170 213 LGDRHLDNVLIDLK-TGEVVHIDYNVCF 239 (307)
T ss_pred CCCCCCccEEEEcC-CCcEEEEeeHhhh
Confidence 48999999999965 6999999999873
No 447
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=81.15 E-value=0.96 Score=48.09 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=26.8
Q ss_pred ccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
+=-+|-|.||||++.+ |+++=||||.+-..++
T Consensus 162 LgigDRHn~NILid~~--G~l~HIDFG~il~~~p 193 (311)
T cd05167 162 LQIKDRHNGNIMIDDD--GHIIHIDFGFIFEISP 193 (311)
T ss_pred hhccccCccceEEcCC--CCEEEEeeHHhhccCC
Confidence 3358999999999864 9999999999876643
No 448
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=81.12 E-value=18 Score=39.35 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.5
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|=|+|||+++. +|+++=||||.+-
T Consensus 206 igDRH~~NILi~~--~G~~~HIDFG~il 231 (350)
T cd00896 206 VGDRHLDNLLLTK--DGKLFHIDFGYIL 231 (350)
T ss_pred ccccCCCcEEEcC--CCCEEEEEhHHhh
Confidence 4899999999985 5999999999886
No 449
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=81.08 E-value=1.8 Score=45.75 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
+.....+|.|.+|.|++...+ |-|-+=|||+.+.+...
T Consensus 193 lH~~wilHRDLK~SNLLm~~~--G~lKiaDFGLAR~ygsp 230 (419)
T KOG0663|consen 193 LHDNWILHRDLKTSNLLLSHK--GILKIADFGLAREYGSP 230 (419)
T ss_pred HhhceeEecccchhheeeccC--CcEEecccchhhhhcCC
Confidence 457788999999999999875 89999999999988766
No 450
>TIGR02214 spoVD_pbp stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD.
Probab=80.83 E-value=5.8 Score=46.97 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCC-----C------CCCCCccccccchHHHHH
Q 004807 228 SDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPR-----P------VQPDSLFPVFSVTKGITA 294 (729)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~-----p------~~~~t~f~i~SitK~~ta 294 (729)
..+...+++.+++.+......+.++.|+ +.|+++.-.++ .+...+. + ..-...|.-||+=|+||+
T Consensus 219 ~~lQ~~ae~~l~~~~~~~~~~~ga~Vvmd~~TG~ILAmas~--p~~dpn~~~~~~~~~~~~n~a~~~~y~PGStfK~~t~ 296 (636)
T TIGR02214 219 ENIQYIIEREADKALRERKPKGVSIIVMNPKNGEILGMSNR--PTYDPNDPRDKSPDTARRNRAVSDAYEPGSTFKIITS 296 (636)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCeEEEEccC--CCCCCCcccccCcchhhccceeccccCCchHHHHHHH
Confidence 4555555555555554444444444454 68998765433 2222111 0 012247999999999997
Q ss_pred HHHHHHHHCCCCCccCch
Q 004807 295 GMLHWLVDNGKLKLEENI 312 (729)
Q Consensus 295 ~~v~~lve~G~l~ldd~v 312 (729)
++. .|+|.++.++.+
T Consensus 297 ~aa---Le~g~~~~~~~~ 311 (636)
T TIGR02214 297 SAA---MEEGIVKESDKF 311 (636)
T ss_pred HHH---HHcCCCCCCCEE
Confidence 665 478999888876
No 451
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=80.76 E-value=2.3 Score=46.12 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=30.7
Q ss_pred HHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccC
Q 004807 34 IYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLS 71 (729)
Q Consensus 34 if~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~ 71 (729)
+..-|..|.|.+|-|||+..+ .+-.|-+=|||+.+...
T Consensus 292 LH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g 330 (475)
T KOG0615|consen 292 LHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG 330 (475)
T ss_pred HHHcCcccccCCcceEEeccCCcceEEEecccchhhccc
Confidence 358999999999999999865 12346778999998875
No 452
>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check
Probab=79.94 E-value=2.3 Score=43.45 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.++..++++. ..+...|++|+|..|.|+++.. +.+-+.|||....+
T Consensus 110 ~~~~~l~~~l-~~lH~~~i~h~~l~~~nili~~---~~~~l~d~g~~~~~ 155 (260)
T cd08222 110 EWFIQLLLGV-HYMHQRRILHRDLKAKNIFLKN---NLLKIGDFGVSRLL 155 (260)
T ss_pred HHHHHHHHHH-HHHHHcCccccCCChhheEeec---CCEeecccCceeec
Confidence 3455555554 4567899999999999999964 57999999987655
No 453
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=79.25 E-value=3.1 Score=42.55 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC------CCeEEEecccccccC
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP------HRPILLDFGLTKKLS 71 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~------g~lvllDfG~v~~l~ 71 (729)
++..++.+. .-+...|+.|+|.+|.||++..++. +.+.+.|||....+.
T Consensus 105 ~~~qi~~~l-~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~ 159 (258)
T cd05078 105 VAKQLAWAL-HFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVL 159 (258)
T ss_pred HHHHHHHHH-HHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccC
Confidence 455555554 4457899999999999999987532 126889999876554
No 454
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=79.21 E-value=1.2 Score=48.42 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.0
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|=|+|||+++. +|+++=||||.+-
T Consensus 212 IGDRHn~NILi~~--~G~l~HIDFG~il 237 (362)
T cd05173 212 IGDRHSDNIMVRK--NGQLFHIDFGHIL 237 (362)
T ss_pred ccccCCCceEECC--CCCEEEEehHHhh
Confidence 3899999999985 5999999999874
No 455
>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta. Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig
Probab=79.04 E-value=1.8 Score=46.25 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
++..++.+. .-+...|++|+|..|.||++..+ +.+.+.|||.+.
T Consensus 106 ~~~qi~~aL-~~lH~~~ivHrDlkp~Nill~~~--~~~~~~~~~~~~ 149 (328)
T cd08226 106 ILFGALRGL-NYLHQNGYIHRNIKASHILISGD--GLVSLSGLSHLY 149 (328)
T ss_pred HHHHHHHHH-HHHHhCCeecCCCCHHHEEEeCC--CcEEEechHHHh
Confidence 444444444 34468899999999999999865 789999987643
No 456
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=79.01 E-value=1.5 Score=48.32 Aligned_cols=41 Identities=24% Similarity=0.471 Sum_probs=34.4
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
++=+...|.+|+|.+|.|+|+..+ |.+-+=|||..-..+..
T Consensus 223 LEYLH~QgiiHRDIKPsNLLl~~~--g~VKIsDFGVs~~~~~~ 263 (576)
T KOG0585|consen 223 LEYLHYQGIIHRDIKPSNLLLSSD--GTVKISDFGVSNEFPQG 263 (576)
T ss_pred HHHHHhcCeeccccchhheEEcCC--CcEEeeccceeeecccC
Confidence 344568899999999999999875 89999999998776544
No 457
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=78.85 E-value=3.1 Score=45.11 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=33.0
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCC----CeEEEecccccccCHH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPH----RPILLDFGLTKKLSSS 73 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g----~lvllDfG~v~~l~~~ 73 (729)
+-+...+++|.|.+|-|||+...... .+=+=|||..+.+.+.
T Consensus 123 q~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~ 168 (429)
T KOG0595|consen 123 QFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG 168 (429)
T ss_pred HHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch
Confidence 34468999999999999999874112 3667899999999943
No 458
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=78.13 E-value=1.4 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLT 67 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v 67 (729)
=+|-|++|||++. +|+++=||||.+
T Consensus 206 igDRH~~NILl~~--~G~l~HIDFG~~ 230 (353)
T cd05166 206 ICDRHNDNIMLTK--SGHMFHIDFGKF 230 (353)
T ss_pred ccccCCCceEECC--CCCEEEEeeHHh
Confidence 4899999999985 599999999975
No 459
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.05 E-value=1.9 Score=49.56 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807 29 AYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS 71 (729)
Q Consensus 29 ~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~ 71 (729)
+-++-+...|.++.|.+--||+++.+ |-+-|.|||||++.-
T Consensus 479 l~L~fLH~~~IIYRDlKLdNiLLD~e--Gh~kiADFGlcKe~m 519 (694)
T KOG0694|consen 479 LGLQFLHENGIIYRDLKLDNLLLDTE--GHVKIADFGLCKEGM 519 (694)
T ss_pred HHHHHHHhcCceeeecchhheEEccc--CcEEecccccccccC
Confidence 33566779999999999999999876 899999999999864
No 460
>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase. Three pathways for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium may favor trehalose, physiological concentrations of trehalose may be much greater than that of maltose and TreS may act largely in its degradation. This model describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.
Probab=77.73 E-value=1.9 Score=49.33 Aligned_cols=31 Identities=35% Similarity=0.642 Sum_probs=24.2
Q ss_pred cccCCCCCCeEEecCCCCCeEEEecc--cccccCHH
Q 004807 40 FNGDPHPGNFLVSKDPPHRPILLDFG--LTKKLSSS 73 (729)
Q Consensus 40 fHaDPHPGNilv~~d~~g~lvllDfG--~v~~l~~~ 73 (729)
+|+|.|.||+++..+ ..++|||- -.+.+.++
T Consensus 382 iHGD~HLgqvL~t~~---d~~IiDFEGEP~Rpl~ER 414 (528)
T TIGR02457 382 IHGDFHLGQVLVVQD---DAVLIDFEGEPARPLAER 414 (528)
T ss_pred EecCcchhcEEEeCC---CeEEEcCCCCCCCChHHh
Confidence 999999999999863 57799994 45555553
No 461
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=77.61 E-value=2.2 Score=46.32 Aligned_cols=61 Identities=30% Similarity=0.417 Sum_probs=43.9
Q ss_pred CCHHhHhhcCCCHHHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 7 NDCESLEAFGVNKQKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 7 ~d~~~l~~~~~d~~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
.|+-.+.+.+-+ +.+.+..+++|..++. -.|++-.|.+|-||||++| |.|-|-||-+..+.
T Consensus 162 GdL~~LrqkQp~-~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvred--GHIMLsDFDLS~~~ 229 (459)
T KOG0610|consen 162 GDLHSLRQKQPG-KRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVRED--GHIMLSDFDLSLRC 229 (459)
T ss_pred ccHHHHHhhCCC-CccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecC--CcEEeeeccccccC
Confidence 345455443322 3445566666655544 6799999999999999986 89999999887665
No 462
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=76.72 E-value=1.6 Score=47.35 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.8
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|=|+|||+++. +|+++=||||.+-
T Consensus 212 IGDRHn~NILi~~--~G~l~HIDFG~il 237 (361)
T cd05174 212 IGDRHSDNIMIRE--SGQLFHIDFGHFL 237 (361)
T ss_pred ccCcCccceeEcC--CCCEEEEehHHhh
Confidence 4899999999986 4999999999854
No 463
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=76.70 E-value=1.5 Score=50.21 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.5
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEeccccc-ccCHHHHHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK-KLSSSMKQAL 78 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~-~l~~~~r~~l 78 (729)
.+++.|.|.+|-|++++.. ++|-+=||||.. +++....+..
T Consensus 130 ~~~icHRDLKpENlLLd~~--~nIKIADFGMAsLe~~gklLeTS 171 (786)
T KOG0588|consen 130 AFNICHRDLKPENLLLDVK--NNIKIADFGMASLEVPGKLLETS 171 (786)
T ss_pred hhcceeccCCchhhhhhcc--cCEeeeccceeecccCCcccccc
Confidence 6789999999999999875 679999999975 3444443333
No 464
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=76.52 E-value=2 Score=46.40 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 19 KQKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 19 ~~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
|..|.++=.+-||+||. ..+.+|.|.+--||+++. ++.+-+-|||+---+
T Consensus 147 r~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~--N~NiKIADFGLSNly 203 (668)
T KOG0611|consen 147 RGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQ--NNNIKIADFGLSNLY 203 (668)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecC--CCCeeeeccchhhhh
Confidence 55677777788888875 689999999999999976 488999999986544
No 465
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=76.52 E-value=3.2 Score=42.65 Aligned_cols=48 Identities=23% Similarity=0.460 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 70 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l 70 (729)
..++..++++. .-+...+++|+|.+|-||+++.+ +.+-|-|||+...+
T Consensus 106 ~~i~~~i~~~l-~~Lh~~~iiH~~l~~~nill~~~--~~~Kl~~f~~~~~~ 153 (259)
T PF07714_consen 106 LSIAIQIAEAL-SYLHSNNIIHGNLSPSNILLDSN--GQVKLSDFGLSRPI 153 (259)
T ss_dssp HHHHHHHHHHH-HHHHHTTEEEST-SGGGEEEETT--TEEEEESTTTGEET
T ss_pred ccccccccccc-ccccccccccccccccccccccc--cccccccccccccc
Confidence 33444444443 33568899999999999999875 79999999999888
No 466
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=76.48 E-value=1.6 Score=47.20 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.9
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
=+|=|+||||++. +|+++=||||.+-.
T Consensus 207 igDRHn~NILi~~--~G~~~HIDFG~ilg 233 (354)
T cd05177 207 VCDRHNDNIMLTH--SGHMFHIDFGKFLG 233 (354)
T ss_pred ccCcCCCceeEcC--CCCEEEEehHHhcC
Confidence 4899999999985 59999999999864
No 467
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=76.31 E-value=1.6 Score=47.50 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.1
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|=|+|||+++. +|+++=||||.+-
T Consensus 216 igDRH~~NILi~~--~G~l~HIDFG~il 241 (366)
T cd05165 216 IGDRHNDNIMVKE--TGQLFHIDFGHIL 241 (366)
T ss_pred ccccCCcceEEcC--CCCEEEEehHHhh
Confidence 4899999999986 4999999999874
No 468
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.00 E-value=3.3 Score=47.02 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=46.8
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH------HHHHHHHHHHhCCHHHHHH
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ------ALAKMFFAAAEGDHVALLS 95 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~------~l~~L~~a~~~~D~~~~~~ 95 (729)
+.=+..++.+|.|.+.|||++.. .|.+-|=|||...-..+...- .--++++|+-++.+++=++
T Consensus 139 LaYLHS~~~IHRDiKAGNILLse--~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvD 207 (948)
T KOG0577|consen 139 LAYLHSHNRIHRDIKAGNILLSE--PGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD 207 (948)
T ss_pred HHHHHHhhHHhhhccccceEecC--CCeeeeccccchhhcCchhcccCCccccchhHheeccccccCCccc
Confidence 45567899999999999999985 389999999998877765432 1136667776666665444
No 469
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=75.89 E-value=2.8 Score=43.95 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCC--CCCeEEEecccccc
Q 004807 21 KVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKK 69 (729)
Q Consensus 21 ~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~ 69 (729)
.|-..++...+.||+ ..=.+|.|.+|.||+|+.|+ .|++-+=|+|+.+-
T Consensus 128 ~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~ 185 (438)
T KOG0666|consen 128 QLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARL 185 (438)
T ss_pred cCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHH
Confidence 455667778888876 33458999999999999762 37899999997653
No 470
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=75.73 E-value=3.7 Score=50.51 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=27.1
Q ss_pred CccccCCCCCCeEEecC---------------CCCCeEEEecccccccCH
Q 004807 38 GFFNGDPHPGNFLVSKD---------------PPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 38 GffHaDPHPGNilv~~d---------------~~g~lvllDfG~v~~l~~ 72 (729)
+++|.|.+|.|||+..+ ..+.+-|.|||+...+..
T Consensus 145 ~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~ 194 (1021)
T PTZ00266 145 RVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI 194 (1021)
T ss_pred CceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccc
Confidence 59999999999999642 123478999999876643
No 471
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.
Probab=75.67 E-value=13 Score=43.09 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHhccCCC------CceEEEEEE--ecceeEEEeeeeecCCCCCC-CCCCCCccccccchHHHHHHHH
Q 004807 227 HSDVEAKLRDFLVELGNDGK------ILGIQVCAY--KDGEVIIDTSAGMLGRYDPR-PVQPDSLFPVFSVTKGITAGML 297 (729)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~~------~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~-p~~~~t~f~i~SitK~~ta~~v 297 (729)
..++.+.+++.+++.+.... ..|. +.|+ +.|+++.- .|..+..... -......|..||.-|+||.++.
T Consensus 229 D~~lQ~~ae~~l~~~~~~~~~~~~~~~~~a-~Vv~d~~TG~IlAm--vg~~~~~~~~~Nra~~~~~~PGStfKp~~~aaA 305 (530)
T TIGR02074 229 DLDMQKAAEKVLNNGLREAGRRANDDLQAA-LVAIDPDTGAVRAL--VGGRDYGESQFNRATQAKRQPGSTFKPFVYAAA 305 (530)
T ss_pred CHHHHHHHHHHHHhhhhcccccccccccee-EEEEECCCCeEEEE--EeCCCCCccccchhhhCCCCCchHHHHHHHHHH
Confidence 35555555666655443222 2343 3344 57887753 3444332211 0122457899999999976555
Q ss_pred HHHHHCCCCCccCchh
Q 004807 298 HWLVDNGKLKLEENIA 313 (729)
Q Consensus 298 ~~lve~G~l~ldd~v~ 313 (729)
+|+| ++.++.+.
T Consensus 306 ---Le~G-i~~~~~~~ 317 (530)
T TIGR02074 306 ---LEKG-WTPASIVD 317 (530)
T ss_pred ---HHcC-CCcCcEec
Confidence 4789 98888765
No 472
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=75.62 E-value=4.8 Score=43.40 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-------C-----------CCCeEEEecccccccCHHHHHHHHH
Q 004807 19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-------P-----------PHRPILLDFGLTKKLSSSMKQALAK 80 (729)
Q Consensus 19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-------~-----------~g~lvllDfG~v~~l~~~~r~~l~~ 80 (729)
.+.++.+|++++.. +...+..|.|.+|-||++-.. + +-.|.+||||-..--.+..
T Consensus 194 ir~m~~QL~~sv~f-Lh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h------ 266 (415)
T KOG0671|consen 194 IRHMGYQLLESVAF-LHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH------ 266 (415)
T ss_pred HHHHHHHHHHHHHH-HHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc------
Confidence 46778888887655 478999999999999987631 1 1238999999987766654
Q ss_pred HHHHHHhCCHHHHHHHHHHcCCcCC
Q 004807 81 MFFAAAEGDHVALLSAFAEMGLRLR 105 (729)
Q Consensus 81 L~~a~~~~D~~~~~~~l~~lG~~~~ 105 (729)
-.++.-.--.+-+++..||+-.+
T Consensus 267 --s~iVsTRHYRAPEViLgLGwS~p 289 (415)
T KOG0671|consen 267 --STIVSTRHYRAPEVILGLGWSQP 289 (415)
T ss_pred --ceeeeccccCCchheeccCcCCc
Confidence 22222223345678888998643
No 473
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=74.64 E-value=13 Score=44.55 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHhccC---CCCceEEEEEE--ecceeEEEeeeeecCCCCCCC---C-CCCCccccccchHHHHHHHH
Q 004807 227 HSDVEAKLRDFLVELGND---GKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRP---V-QPDSLFPVFSVTKGITAGML 297 (729)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~---~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p---~-~~~t~f~i~SitK~~ta~~v 297 (729)
...+...+++.+++.+.. .+....++.|+ +.|+++.- .|..+..+... + .....+..||.-|.|+..+.
T Consensus 249 D~~lQ~~ae~~l~~~~~~~~~~~~~~~a~vv~D~~TG~IlAm--vg~~~~~~~~~~~~~~~~~a~rqPGStfKPf~yaaA 326 (727)
T TIGR02073 249 DADLQRRLEELARRYLSALRPRGISNLAILVVDNRSGAVLAY--VGSADFFDDSNSGQVDGVRAPRSPGSTLKPFLYALA 326 (727)
T ss_pred CHHHHHHHHHHHHHHHHhcCccccceEEEEEEECCCCcEEEE--EeCCCcCCccccchhhhhcCCcCCchHHHHHHHHHH
Confidence 344555555555544332 22223344444 57887753 44444211111 1 13457899999999984444
Q ss_pred HHHHHCCCCCccCchhh-------hccC-CccCCCCCCcHHHHhcCCCCCC
Q 004807 298 HWLVDNGKLKLEENIAN-------IWPE-FKSNGKDLIKVHHVLNHTSGLH 340 (729)
Q Consensus 298 ~~lve~G~l~ldd~v~~-------ylP~-~~~~~~~~iTir~LLtHtSGl~ 340 (729)
.|+|.++.++.+.+ |-|. +.......||+++-|.+++=++
T Consensus 327 ---Le~G~i~p~s~i~d~p~~~~~~~p~N~~~~~~G~vtl~~AL~~S~Nv~ 374 (727)
T TIGR02073 327 ---LDDGLLHPDSLLKDVPLRFGDYAPENFDKTFHGPVPAREALARSLNIP 374 (727)
T ss_pred ---HHCCCCCCCcEecCCCeeECCcCceECCCCCcCeeEHHHHHHhCccHH
Confidence 58899988776644 2221 1111124566666666555443
No 474
>PRK15105 peptidoglycan synthase FtsI; Provisional
Probab=74.37 E-value=12 Score=43.63 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCC-----CCC---CCCCccccccchHHHHHHHH
Q 004807 228 SDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDP-----RPV---QPDSLFPVFSVTKGITAGML 297 (729)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~-----~p~---~~~t~f~i~SitK~~ta~~v 297 (729)
..+...+++.+++.++.......++.|+ +.|+++.-.++-.-|...- .+. .....|.-||+=|+||+++.
T Consensus 237 ~~lQ~~ae~~l~~~~~~~~~~~ga~Vvmdp~TG~ILAmas~P~~dpn~~~~~~~~~~~Nra~~~~y~PGStfK~it~aaa 316 (578)
T PRK15105 237 ERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKDAMRNRAITDVFEPGSTVKPMVVMTA 316 (578)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCcEEEEecCCCCCCCccccCchhhhccHhhcceeCChHHHHHHHHHHH
Confidence 4555555555555444333333334444 6899876544322121110 111 12357999999999998776
Q ss_pred HHHHHCCCCCccCchhh
Q 004807 298 HWLVDNGKLKLEENIAN 314 (729)
Q Consensus 298 ~~lve~G~l~ldd~v~~ 314 (729)
+ |+|.++.++.+..
T Consensus 317 L---e~g~~~~~~~~~~ 330 (578)
T PRK15105 317 L---QRGVVKENSVLNT 330 (578)
T ss_pred H---HcCCCCCCceEec
Confidence 4 8899988887653
No 475
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=73.85 E-value=2 Score=46.51 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
=+|=|+|||+++. +|+++=||||.+-.
T Consensus 215 IgDRHndNImi~~--~G~l~HIDFG~iLg 241 (366)
T cd05175 215 IGDRHNSNIMVKD--DGQLFHIDFGHFLD 241 (366)
T ss_pred ccccCccceeEcC--CCCEEEEehHHhhc
Confidence 4899999999986 49999999998843
No 476
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=73.45 E-value=2.1 Score=46.50 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.0
Q ss_pred ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
=+|=|.|||+++. +|+++=||||.+-
T Consensus 216 IgDRHndNImi~~--~G~lfHIDFG~il 241 (365)
T cd00894 216 IGDRHNDNIMITE--TGNLFHIDFGHIL 241 (365)
T ss_pred ccCccccceeEcC--CCCEEEEeeHHhh
Confidence 3899999999986 4999999999765
No 477
>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]
Probab=73.28 E-value=3.8 Score=42.29 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=31.7
Q ss_pred HHHHHHcCccccCCCCCCeEEecCCCC-CeEEEeccccc
Q 004807 31 AHQIYVDGFFNGDPHPGNFLVSKDPPH-RPILLDFGLTK 68 (729)
Q Consensus 31 ~~qif~~GffHaDPHPGNilv~~d~~g-~lvllDfG~v~ 68 (729)
+..+...|.+|.|..|.|+++... + .+.+.|||...
T Consensus 114 l~~~H~~~~~hrd~kp~nil~~~~--~~~~~l~dfg~~~ 150 (384)
T COG0515 114 LEYLHSKGIIHRDIKPENILLDRD--GRVVKLIDFGLAK 150 (384)
T ss_pred HHHHHhCCeeccCCCHHHeeecCC--CCeEEEeccCcce
Confidence 446788999999999999999875 4 69999999998
No 478
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=72.92 E-value=2.3 Score=45.90 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
=+|=|.|||+++. +|+++=||||.+-.
T Consensus 206 IgDRHn~NILi~~--~Ghl~HIDFG~ilg 232 (353)
T cd05176 206 ICDRHNDNIMLRS--TGHMFHIDFGKFLG 232 (353)
T ss_pred ccCcCCcceEEcC--CCCEEEEeeHHhcC
Confidence 4899999999975 49999999999743
No 479
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=72.53 E-value=2.6 Score=48.66 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.3
Q ss_pred cccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 40 FNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 40 fHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
==+|-|.||||++.+ |.|+=||||.+-.
T Consensus 1148 gIgDRHngNILId~d--GhLfHIDFGFILg 1175 (1374)
T PTZ00303 1148 SIGDRHKGNVLIGTN--GALLHIDFRFIFS 1175 (1374)
T ss_pred ccCcccCCceeEcCC--CCEEEEecceeec
Confidence 358999999999875 9999999999843
No 480
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=72.47 E-value=2.7 Score=43.58 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.6
Q ss_pred ccccCCCCCCeEEecCCCCCeEEEecccc
Q 004807 39 FFNGDPHPGNFLVSKDPPHRPILLDFGLT 67 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~lvllDfG~v 67 (729)
+.=+|-||.||++..+ +|+++-+|||+.
T Consensus 156 lglgdRh~~nili~~~-tG~v~hiDf~~~ 183 (253)
T cd05163 156 LSINNRNPDKIFISRD-TGNVYQSDLLPS 183 (253)
T ss_pred hcCCCCCchhEEEEcC-CCcEEEEeeeee
Confidence 3468999999999986 799999999975
No 481
>COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]
Probab=71.90 E-value=2.2 Score=45.27 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.2
Q ss_pred ccccCCCCCCeEEecCCCCCeEEEeccc
Q 004807 39 FFNGDPHPGNFLVSKDPPHRPILLDFGL 66 (729)
Q Consensus 39 ffHaDPHPGNilv~~d~~g~lvllDfG~ 66 (729)
-+|+|.|-|-+++.+ |+.+||||==
T Consensus 286 RvHGDLHLgQVLvt~---g~~~liDFEG 310 (438)
T COG3281 286 RVHGDLHLGQVLVTP---GRALLIDFEG 310 (438)
T ss_pred HHhccceehheeeeC---CcEEEEecCC
Confidence 479999999999986 7999999953
No 482
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=71.01 E-value=18 Score=43.72 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHhccCCC--CceEEEEEE--ecceeEEEeeeeecCCCCCCCCC----CCCccccccchHHHHHHHHHH
Q 004807 228 SDVEAKLRDFLVELGNDGK--ILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQ----PDSLFPVFSVTKGITAGMLHW 299 (729)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~~--~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~----~~t~f~i~SitK~~ta~~v~~ 299 (729)
..+...+++.+++...... ..| ++.|+ +.|+++. ..|..|.......+ ....+.-||.-|.|+.++
T Consensus 276 ~~lQ~~ae~~~~~~~~~~~~~~~~-A~vviD~~TG~VlA--mvG~~d~~~~~~~~~~~~~~a~rqPGSt~KPfvYaa--- 349 (772)
T PRK11240 276 AGLQRRLEDLALNWKGRLPPRSSL-AMIVVDHTDMAVRG--WVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVYGL--- 349 (772)
T ss_pred HHHHHHHHHHHHHHHhhcCccceE-EEEEEECCCCeEEE--EEeCCCCCcccccchhhhhcCccCCHHHHHHHHHHH---
Confidence 4555555555555433211 233 33444 5677764 34555543221111 245789999999997444
Q ss_pred HHHCCCCCccCchhh-------hccC-CccCCCCCCcHHHHhcCCCCCCC
Q 004807 300 LVDNGKLKLEENIAN-------IWPE-FKSNGKDLIKVHHVLNHTSGLHN 341 (729)
Q Consensus 300 lve~G~l~ldd~v~~-------ylP~-~~~~~~~~iTir~LLtHtSGl~~ 341 (729)
+.|+|.++.++.+.+ |-|. +.......||+++-|.+++=++.
T Consensus 350 ALd~G~i~p~t~l~D~P~~~g~~~p~N~d~~~~G~vtl~~AL~~S~Nv~a 399 (772)
T PRK11240 350 ALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSEALVRSLNLPA 399 (772)
T ss_pred HHHCCCCCCccEEeCCCeeeCCCcceeCCCCCcCeeEHHHHHHhCchHHH
Confidence 357899877765532 4343 22222457888888887765543
No 483
>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C). Proteins in this uncharacterised family are described as transmembrane proteins.
Probab=70.85 E-value=5.1 Score=39.47 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHHH--HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 17 VNKQKVVEEITRAYAHQIY--VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 17 ~d~~~la~~l~~~~~~qif--~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..|-+||..++++...--. ...|+-+|-+|+||-|..+ |++.++|...|...+.
T Consensus 59 ~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~--~~lk~iDld~v~~~~~ 114 (188)
T PF12260_consen 59 EQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDD--GRLKLIDLDDVFVEDK 114 (188)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCC--CcEEEEechhcchhHH
Confidence 3467888888887654332 1337789999999999965 8999999999877654
No 484
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=70.44 E-value=2.8 Score=45.31 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.1
Q ss_pred ccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 41 NGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 41 HaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
=+|=|.|||+++++ |+++=||||.+--
T Consensus 207 IgDRHndNImi~~~--GhlfHIDFG~iLg 233 (354)
T cd00895 207 ICDRHNDNIMLKTT--GHMFHIDFGRFLG 233 (354)
T ss_pred ccccCCCceeEcCC--CCEEEEeeHHhcC
Confidence 38999999999864 9999999997633
No 485
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=69.42 E-value=3.1 Score=46.39 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=34.3
Q ss_pred HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807 32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS 73 (729)
Q Consensus 32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~ 73 (729)
.=+.+.|++-.|.+|-|++++.+ |-+-|+|||..+.+...
T Consensus 534 eYLH~k~iIYRDLKPENllLd~~--Gy~KLVDFGFAKki~~g 573 (732)
T KOG0614|consen 534 EYLHRKGIIYRDLKPENLLLDNR--GYLKLVDFGFAKKIGSG 573 (732)
T ss_pred HHHHhcCceeccCChhheeeccC--CceEEeehhhHHHhccC
Confidence 44679999999999999999865 89999999998876543
No 486
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=69.28 E-value=3.4 Score=43.48 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=30.6
Q ss_pred HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807 33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK 75 (729)
Q Consensus 33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r 75 (729)
-+...|++|+|..|-||++.++ |.+.|=||+.+.+..+..+
T Consensus 160 ~Lh~~GlVHgdi~~~nfll~~~--G~v~Lg~F~~~~r~g~~~~ 200 (288)
T PF14531_consen 160 NLHSYGLVHGDIKPENFLLDQD--GGVFLGDFSSLVRAGTRYR 200 (288)
T ss_dssp HHHHTTEEEST-SGGGEEE-TT--S-EEE--GGGEEETTEEEE
T ss_pred HHhhcceEecccceeeEEEcCC--CCEEEcChHHHeecCceee
Confidence 3468999999999999999875 8999999999988776554
No 487
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.78 E-value=4.4 Score=44.38 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 19 KQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 19 ~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
|-+||..+++.. ++.-..--.+|.|..|.|||++.| ...=+=|||+.+..+.
T Consensus 176 R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~--~~aKlsDFGLa~~~~~ 229 (361)
T KOG1187|consen 176 RLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDED--FNAKLSDFGLAKLGPE 229 (361)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCC--CCEEccCccCcccCCc
Confidence 667888888762 332222348999999999999865 7777899999977776
No 488
>PF02113 Peptidase_S13: D-Ala-D-Ala carboxypeptidase 3 (S13) family; InterPro: IPR000667 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor []. There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins []. Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases [].; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3F_B 3A3E_B 3A3D_A 3A3I_B 2Y59_C 1W8Q_A 3ZVT_B 3ZVW_B 2VGJ_B 1W79_D ....
Probab=68.32 E-value=8.8 Score=43.24 Aligned_cols=54 Identities=24% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHhccCCCCceEEEEE--E--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHH
Q 004807 235 RDFLVELGNDGKILGIQVCA--Y--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLV 301 (729)
Q Consensus 235 ~~~l~~~~~~~~~~G~sv~v--~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lv 301 (729)
.+.|++++++..+++..++| . ..|+++++ + +++..|.=||.+|.||+++++...
T Consensus 2 ~~~i~~~~~~~~l~~~~~gi~v~d~~~g~~l~~--~-----------n~~~~~~PAS~~Kl~Tt~aAL~~L 59 (444)
T PF02113_consen 2 NAAIDALLQDPALPGARVGISVQDLDSGEVLYS--H-----------NADKPFTPASNTKLLTTAAALDTL 59 (444)
T ss_dssp HHHHHHHHTTGCGTT-EEEEEEEETTTTEEEEE--E-----------STTSEBE-GGGHHHHHHHHHHHHT
T ss_pred hhHHHHHHhCccccCCeEEEEEEECCCCCEeEE--e-----------CCCCccCchHHHHHHHHHHHHHhc
Confidence 34455555555555544444 3 46888875 2 778889999999999998877654
No 489
>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []. Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.
Probab=65.93 E-value=2.5 Score=44.67 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred CccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
-.+|+|..+||++++.+ |+.+|+|=.++--
T Consensus 189 sLlHGDLW~GN~~~~~~--g~p~l~DPa~yyg 218 (288)
T PF03881_consen 189 SLLHGDLWSGNVGFDAD--GEPVLFDPACYYG 218 (288)
T ss_dssp EEE-SS-SGGGEEEETT--E-EEE-S---EEE
T ss_pred eeeEcCccccceeecCC--CCceeeccccccC
Confidence 46899999999999975 8899999776643
No 490
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=63.44 E-value=8.7 Score=42.02 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=42.5
Q ss_pred cCCCHHHHHHHHHHHHHH--HHHHcC-ccccCCCCCCeEEecCCCC-CeEEEecccccccCHHH
Q 004807 15 FGVNKQKVVEEITRAYAH--QIYVDG-FFNGDPHPGNFLVSKDPPH-RPILLDFGLTKKLSSSM 74 (729)
Q Consensus 15 ~~~d~~~la~~l~~~~~~--qif~~G-ffHaDPHPGNilv~~d~~g-~lvllDfG~v~~l~~~~ 74 (729)
...+...+....+++.-- =+...+ .+|.|.+|-|+||+.+ + .+-+=|||+.+......
T Consensus 137 ~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~--~~~~KI~DFGlsr~~~~~~ 198 (362)
T KOG0192|consen 137 RKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLK--GKTLKIADFGLSREKVISK 198 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCC--CCEEEECCCccceeecccc
Confidence 456666666666665543 345677 8999999999999875 5 78888999997766543
No 491
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=63.28 E-value=7.4 Score=44.23 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHH-------HHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 21 KVVEEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 21 ~la~~l~~~~~~qi-------f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
++.+-.+.+.++|+ ...|.+|.|.+=-|++|.. +|-+-|||||...
T Consensus 666 ~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~--~g~~klidfgsaa 718 (772)
T KOG1152|consen 666 RMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDS--NGFVKLIDFGSAA 718 (772)
T ss_pred ccchHHHHHHHHHHHhccccccccCceecccccccEEEec--CCeEEEeeccchh
Confidence 34445555555555 4889999999999999964 5899999999753
No 492
>PTZ00384 choline kinase; Provisional
Probab=63.05 E-value=5 Score=44.26 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=24.4
Q ss_pred cCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
..|-|-|+++|||+... +++.||||=-++
T Consensus 227 ~VfCHNDL~~gNIL~~~---~~l~lID~EYA~ 255 (383)
T PTZ00384 227 VLFCHNDLFFTNILDFN---QGIYFIDFDFAG 255 (383)
T ss_pred eeeeeccCCcccEEecC---CCEEEEEecccc
Confidence 58899999999999753 579999996655
No 493
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=62.30 E-value=12 Score=38.64 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
..++++.+|..+.-.| .....+|.|.+.-||+|=.-..-||-|-|||......-
T Consensus 122 ~~K~v~~ql~SAi~fM-HsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~ 175 (378)
T KOG1345|consen 122 NTKKVFAQLLSAIEFM-HSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGT 175 (378)
T ss_pred HHHHHHHHHHHHHHHh-hccchhhcccccceEEEecCCccEEEeeecccccccCc
Confidence 3567777777766555 78999999999999986532245899999999877653
No 494
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=62.04 E-value=8.8 Score=42.09 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=30.3
Q ss_pred HcCccccCCCCCCeEEecC-CCCCeEEEecccccccCHHH
Q 004807 36 VDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSSSM 74 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~~~ 74 (729)
.--.+|=|.+||||++-.. --|.|-+-|||+.+-++++.
T Consensus 588 kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddS 627 (775)
T KOG1151|consen 588 KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDS 627 (775)
T ss_pred CCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCc
Confidence 4567999999999987642 12679999999988776653
No 495
>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]
Probab=60.60 E-value=9 Score=43.48 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807 20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS 72 (729)
Q Consensus 20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~ 72 (729)
.+++..|+.+. .-+...+..|+|..|-||++.. +|.+-|-|||+.+.++.
T Consensus 103 ~~~a~~LVsaL-~yLhs~rilhrd~kPqniLl~~--~~~~KlcdFg~Ar~m~~ 152 (808)
T KOG0597|consen 103 RAIAYDLVSAL-YYLHSNRILHRDMKPQNILLEK--GGTLKLCDFGLARAMST 152 (808)
T ss_pred HHHHHHHHHHH-HHHHhcCcccccCCcceeeecC--CCceeechhhhhhhccc
Confidence 45666666554 4468999999999999999975 48899999999998887
No 496
>TIGR02071 PBP_1b penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B.
Probab=60.50 E-value=30 Score=41.65 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.1
Q ss_pred cceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 487 ANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 487 gGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
|++-.|+-+|+....++.|||..-+.
T Consensus 544 G~~~vTPlqmA~aYatiANgG~~~~p 569 (730)
T TIGR02071 544 GAINLTPYEVAQLYQTIASGGNRAPL 569 (730)
T ss_pred cCCCCCHHHHHHHHHHHHCCCEEccC
Confidence 45668999999999999999986554
No 497
>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]
Probab=60.15 E-value=5.9 Score=42.87 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.5
Q ss_pred HcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807 36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK 68 (729)
Q Consensus 36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~ 68 (729)
..-|=|.|.|-+||+++ + |.|.||||-|++
T Consensus 340 kf~fehrnlt~~niLId-~--GnvtLIDfklsR 369 (488)
T COG5072 340 KFPFEHRNLTLDNILID-E--GNVTLIDFKLSR 369 (488)
T ss_pred cCCcccccccccceeee-c--CceEEEEeeeee
Confidence 45677999999999998 3 899999999987
No 498
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.74 E-value=8.2 Score=41.99 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807 33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK 69 (729)
Q Consensus 33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~ 69 (729)
-+...|.+-.|.+-.|++++.+ |.|-+-|||||++
T Consensus 465 FLh~kgIiYRDLKLDNvmLd~e--GHiKi~DFGmcKE 499 (683)
T KOG0696|consen 465 FLHSKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKE 499 (683)
T ss_pred hhhcCCeeeeeccccceEeccC--CceEeeecccccc
Confidence 3557899999999999999875 8999999999986
No 499
>PRK14850 penicillin-binding protein 1b; Provisional
Probab=58.83 E-value=41 Score=40.64 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=22.3
Q ss_pred CcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807 486 AANGHCSARALARYYAALADGGVVPPP 512 (729)
Q Consensus 486 agGl~sTa~Dlak~~~~ll~gg~~~~~ 512 (729)
=|++-.|+-+|++...++.|+|.....
T Consensus 553 LG~~~vTPlqmA~aYatiANgG~~~~p 579 (764)
T PRK14850 553 LGAINLTPMEVAQVFQIIGSGGYKSSL 579 (764)
T ss_pred cCCCCCCHHHHHHHHHHHhcCCeEecc
Confidence 345568999999999999999987554
No 500
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.06 E-value=7 Score=42.90 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=40.7
Q ss_pred HHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHH
Q 004807 29 AYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQA 77 (729)
Q Consensus 29 ~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~ 77 (729)
.-+.-+...+-.|.|..+.|++|..+ |.+.|-|||..+.++....+.
T Consensus 122 ~~l~ylH~~~kiHrDIKaanil~s~~--g~vkl~DfgVa~ql~~~~~rr 168 (467)
T KOG0201|consen 122 KGLDYLHSEKKIHRDIKAANILLSES--GDVKLADFGVAGQLTNTVKRR 168 (467)
T ss_pred HHhhhhhhcceecccccccceeEecc--CcEEEEecceeeeeechhhcc
Confidence 34566778999999999999999986 899999999999999877664
Done!