Query 004808
Match_columns 729
No_of_seqs 599 out of 3427
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338 ATP-dependent RNA heli 100.0 2E-103 3E-108 821.5 40.8 461 110-570 163-629 (691)
2 KOG0330 ATP-dependent RNA heli 100.0 9.5E-76 2.1E-80 597.2 31.7 374 124-503 60-433 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 1.3E-68 2.8E-73 580.7 35.4 361 125-489 91-460 (519)
4 COG0513 SrmB Superfamily II DN 100.0 1.7E-67 3.8E-72 595.2 42.3 366 125-494 29-398 (513)
5 KOG0340 ATP-dependent RNA heli 100.0 2.1E-67 4.6E-72 530.3 33.5 375 123-503 5-387 (442)
6 KOG0345 ATP-dependent RNA heli 100.0 3.3E-65 7.2E-70 530.9 44.0 360 126-488 5-375 (567)
7 KOG0342 ATP-dependent RNA heli 100.0 3.5E-66 7.5E-71 542.2 36.9 384 122-511 79-468 (543)
8 KOG0343 RNA Helicase [RNA proc 100.0 3.7E-66 8E-71 545.3 36.9 430 124-573 68-503 (758)
9 KOG0328 Predicted ATP-dependen 100.0 4.2E-65 9E-70 498.7 29.9 369 123-497 25-393 (400)
10 KOG0333 U5 snRNP-like RNA heli 100.0 3.3E-64 7.2E-69 528.5 32.9 366 120-489 240-636 (673)
11 KOG0347 RNA helicase [RNA proc 100.0 2.2E-63 4.9E-68 524.4 30.1 370 120-493 176-586 (731)
12 PRK04837 ATP-dependent RNA hel 100.0 7.2E-62 1.6E-66 542.3 42.2 368 123-494 6-379 (423)
13 PRK11634 ATP-dependent RNA hel 100.0 1.4E-60 2.9E-65 548.7 49.5 370 124-500 5-375 (629)
14 KOG0346 RNA helicase [RNA proc 100.0 1.6E-61 3.4E-66 499.0 35.5 359 125-486 19-419 (569)
15 KOG0326 ATP-dependent RNA heli 100.0 3.5E-63 7.7E-68 492.4 20.8 372 116-495 76-447 (459)
16 KOG0348 ATP-dependent RNA heli 100.0 4.4E-62 9.6E-67 513.1 30.3 372 117-488 128-565 (708)
17 PRK10590 ATP-dependent RNA hel 100.0 1.2E-60 2.5E-65 536.4 42.5 364 126-493 2-368 (456)
18 PTZ00110 helicase; Provisional 100.0 2E-60 4.4E-65 542.6 44.0 366 120-489 125-496 (545)
19 PRK11776 ATP-dependent RNA hel 100.0 2.4E-60 5.3E-65 535.7 42.5 364 124-495 3-367 (460)
20 PRK04537 ATP-dependent RNA hel 100.0 2.5E-60 5.3E-65 543.7 43.1 367 125-494 9-381 (572)
21 PRK11192 ATP-dependent RNA hel 100.0 2.6E-59 5.7E-64 523.9 43.8 366 126-494 2-369 (434)
22 KOG0336 ATP-dependent RNA heli 100.0 1.9E-60 4.2E-65 485.8 27.4 363 121-488 215-583 (629)
23 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-58 2.8E-63 526.2 42.3 364 121-489 117-487 (518)
24 KOG0335 ATP-dependent RNA heli 100.0 1.4E-59 3E-64 501.5 28.6 364 121-488 70-455 (482)
25 PRK01297 ATP-dependent RNA hel 100.0 5.1E-57 1.1E-61 510.1 43.8 370 124-497 86-462 (475)
26 KOG0341 DEAD-box protein abstr 100.0 9.1E-60 2E-64 478.0 17.3 359 115-478 160-529 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 7E-58 1.5E-62 478.1 30.3 365 121-488 219-586 (731)
28 PTZ00424 helicase 45; Provisio 100.0 7.6E-55 1.7E-59 483.5 42.4 365 124-494 27-391 (401)
29 KOG0350 DEAD-box ATP-dependent 100.0 9.6E-56 2.1E-60 462.8 32.6 363 124-491 126-554 (620)
30 KOG0332 ATP-dependent RNA heli 100.0 3.4E-56 7.5E-61 451.5 27.5 373 117-497 82-464 (477)
31 KOG0337 ATP-dependent RNA heli 100.0 5E-56 1.1E-60 456.5 23.6 365 124-494 20-385 (529)
32 KOG0327 Translation initiation 100.0 8.2E-55 1.8E-59 446.2 25.0 363 124-495 25-388 (397)
33 KOG0334 RNA helicase [RNA proc 100.0 2.9E-54 6.2E-59 489.4 31.6 377 119-499 359-740 (997)
34 KOG4284 DEAD box protein [Tran 100.0 3.2E-52 7E-57 445.6 26.6 358 123-485 23-388 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 9.1E-50 2E-54 467.6 41.1 358 131-500 20-411 (742)
36 KOG0344 ATP-dependent RNA heli 100.0 1.8E-50 3.8E-55 433.6 25.4 367 121-489 128-507 (593)
37 PLN03137 ATP-dependent DNA hel 100.0 6.3E-48 1.4E-52 448.4 41.9 344 126-487 436-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.6E-47 3.5E-52 431.3 35.2 326 142-488 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.1E-45 2.4E-50 427.2 39.2 330 135-487 12-353 (607)
40 KOG0329 ATP-dependent RNA heli 100.0 1.4E-47 3.1E-52 370.4 16.7 332 121-494 38-373 (387)
41 TIGR01389 recQ ATP-dependent D 100.0 1.4E-44 3.1E-49 418.8 36.5 324 142-488 8-342 (591)
42 PRK13767 ATP-dependent helicas 100.0 2.2E-43 4.7E-48 421.7 39.6 339 132-476 18-397 (876)
43 PRK02362 ski2-like helicase; P 100.0 1.3E-43 2.8E-48 419.8 31.7 334 126-478 2-398 (737)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9E-43 2E-47 400.9 34.9 315 143-475 12-389 (844)
45 PRK00254 ski2-like helicase; P 100.0 3.6E-42 7.8E-47 406.4 35.0 335 126-478 2-389 (720)
46 TIGR00580 mfd transcription-re 100.0 1.7E-41 3.6E-46 401.4 38.2 333 131-488 435-787 (926)
47 PRK10689 transcription-repair 100.0 5.2E-41 1.1E-45 405.1 39.0 330 134-488 588-936 (1147)
48 PRK09401 reverse gyrase; Revie 100.0 6.7E-41 1.4E-45 405.0 36.1 283 143-449 77-410 (1176)
49 COG0514 RecQ Superfamily II DN 100.0 1.2E-40 2.7E-45 368.8 30.3 329 142-489 12-349 (590)
50 PRK10917 ATP-dependent DNA hel 100.0 1.2E-39 2.7E-44 380.7 37.9 315 137-475 252-587 (681)
51 PHA02653 RNA helicase NPH-II; 100.0 7.6E-40 1.7E-44 375.2 32.5 314 149-479 166-516 (675)
52 COG1201 Lhr Lhr-like helicases 100.0 3.5E-39 7.5E-44 369.3 35.9 376 131-513 7-400 (814)
53 PRK01172 ski2-like helicase; P 100.0 1.6E-39 3.6E-44 382.1 33.9 339 126-484 2-386 (674)
54 TIGR00643 recG ATP-dependent D 100.0 3.6E-39 7.9E-44 374.4 35.1 318 134-475 223-564 (630)
55 PRK09751 putative ATP-dependen 100.0 4.7E-39 1E-43 389.5 36.8 339 167-510 1-420 (1490)
56 KOG0349 Putative DEAD-box RNA 100.0 1.5E-40 3.2E-45 342.0 18.0 290 195-485 285-623 (725)
57 PRK14701 reverse gyrase; Provi 100.0 9.6E-39 2.1E-43 393.5 36.6 293 135-449 67-412 (1638)
58 TIGR01054 rgy reverse gyrase. 100.0 2.8E-38 6E-43 382.8 36.9 292 135-449 66-409 (1171)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-38 3.2E-43 372.8 32.6 309 151-481 6-340 (819)
60 PRK11664 ATP-dependent RNA hel 100.0 3.7E-38 8.1E-43 370.3 30.4 307 151-479 9-341 (812)
61 PRK12898 secA preprotein trans 100.0 1E-36 2.2E-41 344.1 37.2 321 143-481 100-590 (656)
62 PRK09200 preprotein translocas 100.0 1.3E-35 2.7E-40 342.0 38.0 320 143-481 75-545 (790)
63 COG1111 MPH1 ERCC4-like helica 100.0 1E-35 2.2E-40 315.5 33.6 328 145-482 13-486 (542)
64 PHA02558 uvsW UvsW helicase; P 100.0 8.6E-36 1.9E-40 337.9 30.6 304 145-468 112-443 (501)
65 KOG0352 ATP-dependent DNA heli 100.0 4.5E-36 9.8E-41 309.0 24.6 334 135-488 6-373 (641)
66 TIGR00963 secA preprotein tran 100.0 2.2E-34 4.7E-39 326.6 39.1 321 143-482 53-522 (745)
67 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-35 2.8E-40 324.5 27.1 302 164-478 1-337 (358)
68 TIGR03714 secA2 accessory Sec 100.0 1.8E-34 3.9E-39 329.4 37.3 320 143-481 67-541 (762)
69 PRK13766 Hef nuclease; Provisi 100.0 8.9E-34 1.9E-38 339.4 37.6 326 145-479 13-481 (773)
70 COG1202 Superfamily II helicas 100.0 1.7E-34 3.7E-39 307.1 25.5 338 125-477 194-553 (830)
71 KOG0354 DEAD-box like helicase 100.0 5.8E-34 1.3E-38 318.8 28.8 333 145-486 60-538 (746)
72 KOG0351 ATP-dependent DNA heli 100.0 1.2E-33 2.5E-38 330.2 27.9 335 135-488 252-603 (941)
73 PRK11131 ATP-dependent RNA hel 100.0 2E-33 4.4E-38 335.1 29.1 305 150-480 77-414 (1294)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 7E-33 1.5E-37 301.0 30.8 293 151-462 1-357 (357)
75 PRK04914 ATP-dependent helicas 100.0 2.8E-31 6E-36 313.2 37.0 337 147-491 152-617 (956)
76 COG1204 Superfamily II helicas 100.0 5.8E-32 1.3E-36 314.3 28.2 334 131-475 15-406 (766)
77 COG1205 Distinct helicase fami 100.0 1.8E-31 4E-36 314.2 32.0 338 132-475 55-420 (851)
78 TIGR00603 rad25 DNA repair hel 100.0 1.6E-31 3.5E-36 305.3 28.4 311 147-482 255-612 (732)
79 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.6E-31 1.2E-35 315.5 29.4 312 144-479 61-406 (1283)
80 KOG0353 ATP-dependent DNA heli 100.0 5.3E-31 1.2E-35 267.6 22.8 341 129-486 75-476 (695)
81 PRK05580 primosome assembly pr 100.0 3.8E-29 8.2E-34 291.5 34.4 320 147-486 144-558 (679)
82 PRK13104 secA preprotein trans 100.0 5E-28 1.1E-32 278.3 38.5 321 143-481 79-591 (896)
83 cd00268 DEADc DEAD-box helicas 100.0 4.2E-29 9.2E-34 250.7 24.8 202 127-330 1-202 (203)
84 KOG0952 DNA/RNA helicase MER3/ 100.0 3.6E-29 7.8E-34 282.5 25.8 336 141-483 104-497 (1230)
85 PRK12899 secA preprotein trans 100.0 2.4E-27 5.1E-32 272.0 39.7 148 128-284 65-228 (970)
86 COG0556 UvrB Helicase subunit 100.0 1.1E-28 2.3E-33 262.2 23.6 264 301-578 385-657 (663)
87 KOG0926 DEAH-box RNA helicase 100.0 9.9E-29 2.1E-33 271.0 23.8 330 132-476 244-703 (1172)
88 PRK12904 preprotein translocas 100.0 4.3E-27 9.3E-32 270.6 37.8 319 143-481 78-577 (830)
89 PRK12906 secA preprotein trans 100.0 6.2E-27 1.4E-31 268.3 35.4 320 143-481 77-557 (796)
90 COG1061 SSL2 DNA or RNA helica 100.0 1.1E-27 2.5E-32 266.6 25.2 300 147-469 36-382 (442)
91 PRK09694 helicase Cas3; Provis 100.0 6.3E-27 1.4E-31 274.9 32.2 314 145-466 284-664 (878)
92 PLN03142 Probable chromatin-re 100.0 1.5E-26 3.2E-31 274.1 33.9 329 147-488 169-612 (1033)
93 TIGR00595 priA primosomal prot 100.0 3.1E-27 6.8E-32 266.3 26.6 300 166-485 1-389 (505)
94 KOG0947 Cytoplasmic exosomal R 100.0 4E-26 8.7E-31 255.1 33.2 326 141-486 292-734 (1248)
95 COG1200 RecG RecG-like helicas 100.0 3.5E-26 7.6E-31 253.0 31.3 333 131-487 246-605 (677)
96 KOG2340 Uncharacterized conser 99.9 2.3E-27 5E-32 250.9 18.0 342 144-486 213-677 (698)
97 KOG0385 Chromatin remodeling c 99.9 2.3E-26 5E-31 252.5 24.8 323 147-487 167-611 (971)
98 PRK13107 preprotein translocas 99.9 2.9E-25 6.3E-30 254.8 33.6 318 143-481 79-595 (908)
99 COG1643 HrpA HrpA-like helicas 99.9 5.2E-26 1.1E-30 263.2 26.2 310 149-478 52-388 (845)
100 COG1197 Mfd Transcription-repa 99.9 8.4E-25 1.8E-29 254.4 33.1 322 141-487 589-929 (1139)
101 COG4581 Superfamily II RNA hel 99.9 2.4E-24 5.2E-29 250.7 32.8 330 140-486 113-548 (1041)
102 TIGR00631 uvrb excinuclease AB 99.9 4E-25 8.7E-30 254.8 25.6 203 369-576 441-654 (655)
103 PF06862 DUF1253: Protein of u 99.9 2E-24 4.3E-29 233.9 28.2 300 188-487 29-425 (442)
104 KOG0922 DEAH-box RNA helicase 99.9 8.2E-25 1.8E-29 239.8 24.8 309 149-479 53-392 (674)
105 KOG0951 RNA helicase BRR2, DEA 99.9 7.1E-25 1.5E-29 250.4 24.9 347 131-484 295-709 (1674)
106 KOG0948 Nuclear exosomal RNA h 99.9 7.2E-26 1.6E-30 247.5 15.5 320 147-486 129-549 (1041)
107 KOG0387 Transcription-coupled 99.9 5.8E-24 1.3E-28 235.0 30.5 337 130-487 196-671 (923)
108 PRK11448 hsdR type I restricti 99.9 2E-24 4.4E-29 260.7 28.6 305 147-465 413-801 (1123)
109 PF00270 DEAD: DEAD/DEAH box h 99.9 1.8E-24 4E-29 210.1 19.8 165 149-318 1-168 (169)
110 COG4098 comFA Superfamily II D 99.9 2.7E-23 5.8E-28 210.5 28.4 312 147-486 97-425 (441)
111 KOG0923 mRNA splicing factor A 99.9 3.6E-24 7.8E-29 231.8 21.4 313 146-477 264-606 (902)
112 PRK05298 excinuclease ABC subu 99.9 7.8E-23 1.7E-27 237.6 33.7 189 369-578 445-646 (652)
113 KOG0950 DNA polymerase theta/e 99.9 2E-23 4.2E-28 235.8 20.9 342 131-487 207-621 (1008)
114 KOG0384 Chromodomain-helicase 99.9 1.1E-23 2.4E-28 241.6 19.0 329 146-488 369-824 (1373)
115 KOG0924 mRNA splicing factor A 99.9 6.1E-23 1.3E-27 222.5 21.7 311 145-477 354-697 (1042)
116 COG1110 Reverse gyrase [DNA re 99.9 1E-21 2.3E-26 222.7 30.7 280 143-448 79-416 (1187)
117 PRK12900 secA preprotein trans 99.9 5.3E-22 1.1E-26 228.8 26.1 124 356-481 582-715 (1025)
118 KOG0920 ATP-dependent RNA heli 99.9 6.2E-22 1.3E-26 228.4 26.3 315 148-477 174-544 (924)
119 TIGR01407 dinG_rel DnaQ family 99.9 6.6E-20 1.4E-24 220.4 32.7 330 132-476 231-813 (850)
120 COG1203 CRISPR-associated heli 99.9 1.2E-20 2.5E-25 222.6 24.4 330 148-484 196-557 (733)
121 KOG0392 SNF2 family DNA-depend 99.8 3.6E-20 7.9E-25 212.0 21.1 322 148-478 976-1455(1549)
122 PRK12326 preprotein translocas 99.8 5.3E-18 1.1E-22 191.1 36.6 320 143-481 75-551 (764)
123 COG1198 PriA Primosomal protei 99.8 6.7E-19 1.5E-23 201.7 28.2 320 147-487 198-613 (730)
124 KOG0925 mRNA splicing factor A 99.8 4.8E-19 1E-23 186.4 23.5 329 124-477 24-387 (699)
125 KOG0389 SNF2 family DNA-depend 99.8 1.9E-19 4.1E-24 199.3 21.3 322 148-479 400-890 (941)
126 KOG0390 DNA repair protein, SN 99.8 1.2E-18 2.6E-23 198.3 27.3 323 147-477 238-707 (776)
127 PRK13103 secA preprotein trans 99.8 1.1E-17 2.4E-22 192.8 34.0 317 143-481 79-595 (913)
128 smart00487 DEXDc DEAD-like hel 99.8 1.4E-18 3.1E-23 171.8 22.0 186 143-333 4-191 (201)
129 TIGR00348 hsdR type I site-spe 99.8 3.5E-18 7.5E-23 199.6 28.7 300 148-464 239-634 (667)
130 PRK12903 secA preprotein trans 99.8 7.4E-17 1.6E-21 184.1 35.4 319 143-481 75-543 (925)
131 KOG0391 SNF2 family DNA-depend 99.8 2.4E-17 5.3E-22 187.1 29.0 111 368-478 1274-1388(1958)
132 KOG0386 Chromatin remodeling c 99.8 1.2E-18 2.6E-23 197.3 16.2 327 146-488 393-847 (1157)
133 PRK07246 bifunctional ATP-depe 99.8 8.5E-17 1.8E-21 191.2 30.5 324 143-488 242-796 (820)
134 COG4096 HsdR Type I site-speci 99.8 2.3E-17 5.1E-22 185.4 22.9 297 146-463 164-524 (875)
135 KOG1123 RNA polymerase II tran 99.8 1E-17 2.3E-22 176.8 17.9 314 146-484 301-660 (776)
136 CHL00122 secA preprotein trans 99.8 1.1E-15 2.5E-20 175.7 34.7 131 143-284 73-209 (870)
137 KOG1000 Chromatin remodeling p 99.7 8.9E-16 1.9E-20 162.4 27.1 326 147-489 198-617 (689)
138 KOG0388 SNF2 family DNA-depend 99.7 1.2E-16 2.5E-21 174.4 19.1 111 368-478 1042-1155(1185)
139 KOG0949 Predicted helicase, DE 99.7 6.9E-16 1.5E-20 174.1 23.8 161 147-315 511-674 (1330)
140 PRK12902 secA preprotein trans 99.7 5.2E-15 1.1E-19 169.8 31.1 131 143-284 82-218 (939)
141 cd00079 HELICc Helicase superf 99.7 1.5E-16 3.2E-21 147.3 13.6 117 357-473 13-131 (131)
142 PF00271 Helicase_C: Helicase 99.7 6.6E-17 1.4E-21 136.1 8.2 78 388-465 1-78 (78)
143 PRK08074 bifunctional ATP-depe 99.7 1.6E-14 3.4E-19 174.9 29.7 119 369-487 751-905 (928)
144 TIGR03117 cas_csf4 CRISPR-asso 99.7 7.9E-14 1.7E-18 159.2 32.1 74 156-233 10-86 (636)
145 KOG0953 Mitochondrial RNA heli 99.7 2.1E-15 4.6E-20 161.8 18.0 276 165-487 194-486 (700)
146 cd00046 DEXDc DEAD-like helica 99.7 3.4E-15 7.4E-20 138.8 16.6 144 163-312 1-144 (144)
147 KOG1002 Nucleotide excision re 99.6 4.1E-14 8.9E-19 149.6 25.4 113 366-478 634-750 (791)
148 KOG4150 Predicted ATP-dependen 99.6 1.1E-14 2.4E-19 155.9 19.3 347 136-491 275-656 (1034)
149 COG4889 Predicted helicase [Ge 99.6 9.6E-16 2.1E-20 170.7 9.8 320 144-474 158-585 (1518)
150 PRK12901 secA preprotein trans 99.6 2.5E-13 5.5E-18 157.5 25.2 110 369-481 627-745 (1112)
151 PF04851 ResIII: Type III rest 99.6 2.3E-14 5E-19 140.7 11.8 153 147-313 3-183 (184)
152 KOG4439 RNA polymerase II tran 99.5 9.9E-14 2.1E-18 152.5 17.4 112 367-478 743-859 (901)
153 COG1199 DinG Rad3-related DNA 99.5 1.3E-12 2.8E-17 154.2 28.4 110 360-473 470-614 (654)
154 PRK11747 dinG ATP-dependent DN 99.5 6.4E-12 1.4E-16 147.8 33.5 77 369-449 533-616 (697)
155 smart00490 HELICc helicase sup 99.5 3.6E-14 7.8E-19 119.8 8.5 81 385-465 2-82 (82)
156 TIGR00604 rad3 DNA repair heli 99.5 2.3E-12 4.9E-17 152.6 26.8 75 143-220 6-84 (705)
157 COG0553 HepA Superfamily II DN 99.5 1.8E-12 3.9E-17 158.2 25.0 107 372-478 713-823 (866)
158 KOG0951 RNA helicase BRR2, DEA 99.5 1.2E-12 2.6E-17 151.5 20.3 314 147-485 1143-1502(1674)
159 KOG1015 Transcription regulato 99.5 3.7E-12 8E-17 143.4 21.5 135 368-504 1140-1304(1567)
160 PRK14873 primosome assembly pr 99.5 7E-12 1.5E-16 145.1 24.4 136 169-320 167-311 (665)
161 TIGR02562 cas3_yersinia CRISPR 99.3 9.5E-11 2.1E-15 137.2 23.4 311 148-466 409-881 (1110)
162 PF02399 Herpes_ori_bp: Origin 99.3 2.4E-10 5.3E-15 130.7 20.0 287 165-476 52-387 (824)
163 PF00176 SNF2_N: SNF2 family N 99.2 2E-11 4.3E-16 129.8 9.1 156 151-314 1-174 (299)
164 COG0653 SecA Preprotein transl 99.2 6E-10 1.3E-14 128.3 19.4 314 148-479 81-547 (822)
165 KOG0921 Dosage compensation co 99.1 1.6E-10 3.4E-15 130.3 11.4 312 154-476 385-773 (1282)
166 PF07652 Flavi_DEAD: Flaviviru 99.1 5.2E-10 1.1E-14 102.9 11.2 135 162-316 4-140 (148)
167 COG0610 Type I site-specific r 99.1 3.7E-08 8.1E-13 119.3 29.7 299 163-475 274-651 (962)
168 smart00488 DEXDc2 DEAD-like he 99.1 1.2E-09 2.6E-14 115.4 14.1 75 144-219 6-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 1.2E-09 2.6E-14 115.4 14.1 75 144-219 6-84 (289)
170 KOG1016 Predicted DNA helicase 98.9 8.4E-08 1.8E-12 107.0 21.7 131 370-500 719-872 (1387)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.5E-07 3.3E-12 97.2 15.7 131 143-284 74-210 (266)
172 TIGR00596 rad1 DNA repair prot 98.4 5E-06 1.1E-10 98.5 17.8 70 243-313 4-73 (814)
173 PRK15483 type III restriction- 98.3 3.4E-06 7.4E-11 100.0 13.1 70 420-489 501-580 (986)
174 KOG1001 Helicase-like transcri 98.3 1.4E-06 3E-11 101.0 9.2 101 372-472 541-643 (674)
175 COG3587 Restriction endonuclea 98.3 2.2E-05 4.8E-10 89.9 18.2 71 419-489 482-565 (985)
176 KOG1132 Helicase of the DEAD s 98.3 0.00011 2.3E-09 84.8 22.9 82 367-449 558-656 (945)
177 PF13086 AAA_11: AAA domain; P 98.2 9.3E-06 2E-10 82.6 12.2 70 148-218 2-75 (236)
178 PF13307 Helicase_C_2: Helicas 98.2 4E-06 8.6E-11 81.4 8.7 84 363-449 3-92 (167)
179 KOG0952 DNA/RNA helicase MER3/ 98.2 9E-07 2E-11 102.7 3.9 131 148-285 928-1060(1230)
180 PF13604 AAA_30: AAA domain; P 98.0 3.3E-05 7.2E-10 77.0 10.8 124 147-311 1-130 (196)
181 KOG1802 RNA helicase nonsense 98.0 0.0001 2.2E-09 82.2 14.5 84 139-231 402-485 (935)
182 KOG0383 Predicted helicase [Ge 97.9 1.5E-06 3.3E-11 99.5 -0.8 64 369-433 630-696 (696)
183 PF13872 AAA_34: P-loop contai 97.9 0.0001 2.2E-09 76.7 12.4 173 130-319 26-227 (303)
184 KOG1131 RNA polymerase II tran 97.8 0.00097 2.1E-08 72.8 17.8 109 367-476 527-679 (755)
185 PF12340 DUF3638: Protein of u 97.8 0.00017 3.7E-09 72.4 11.5 152 126-285 4-186 (229)
186 TIGR01447 recD exodeoxyribonuc 97.8 0.00021 4.5E-09 82.6 13.2 144 149-311 147-295 (586)
187 PF02562 PhoH: PhoH-like prote 97.8 7.2E-05 1.6E-09 74.4 8.1 139 146-311 3-155 (205)
188 PRK10875 recD exonuclease V su 97.7 0.00022 4.8E-09 82.6 12.5 143 149-311 154-301 (615)
189 PRK10536 hypothetical protein; 97.7 0.00049 1.1E-08 70.5 13.3 143 144-309 56-210 (262)
190 KOG1803 DNA helicase [Replicat 97.7 9.9E-05 2.2E-09 82.1 7.7 65 147-217 185-250 (649)
191 PF13245 AAA_19: Part of AAA d 97.6 0.00015 3.2E-09 60.4 6.6 60 155-216 2-62 (76)
192 PF09848 DUF2075: Uncharacteri 97.6 0.00015 3.3E-09 79.2 8.5 107 165-298 4-117 (352)
193 TIGR00376 DNA helicase, putati 97.6 0.00068 1.5E-08 79.5 13.1 67 146-218 156-223 (637)
194 TIGR01448 recD_rel helicase, p 97.5 0.001 2.2E-08 79.1 13.5 129 143-311 320-452 (720)
195 PF00580 UvrD-helicase: UvrD/R 97.3 0.0014 3E-08 70.0 10.2 124 148-281 1-125 (315)
196 PF13401 AAA_22: AAA domain; P 97.1 0.00097 2.1E-08 61.4 6.5 18 162-179 4-21 (131)
197 smart00492 HELICc3 helicase su 97.0 0.0046 1E-07 58.0 9.5 52 398-449 25-79 (141)
198 PRK08181 transposase; Validate 97.0 0.014 3E-07 61.0 14.0 111 158-316 102-213 (269)
199 PRK12723 flagellar biosynthesi 96.9 0.0099 2.2E-07 65.2 13.1 130 163-323 175-309 (388)
200 PRK06526 transposase; Provisio 96.9 0.01 2.2E-07 61.6 12.3 47 270-316 158-205 (254)
201 PF13871 Helicase_C_4: Helicas 96.9 0.0037 8E-08 64.9 8.8 80 410-489 51-142 (278)
202 PRK04296 thymidine kinase; Pro 96.8 0.0038 8.3E-08 61.9 8.1 108 164-311 4-114 (190)
203 TIGR02768 TraA_Ti Ti-type conj 96.8 0.02 4.4E-07 68.5 15.0 74 132-212 338-412 (744)
204 smart00491 HELICc2 helicase su 96.7 0.0063 1.4E-07 57.2 8.4 67 383-449 4-80 (142)
205 cd00009 AAA The AAA+ (ATPases 96.7 0.023 4.9E-07 52.5 11.8 31 156-187 11-43 (151)
206 PRK13889 conjugal transfer rel 96.7 0.023 5E-07 69.2 14.6 126 143-311 343-470 (988)
207 COG3421 Uncharacterized protei 96.6 0.0056 1.2E-07 68.2 7.9 142 167-314 2-167 (812)
208 PF14617 CMS1: U3-containing 9 96.6 0.0072 1.6E-07 62.0 8.0 89 192-282 122-212 (252)
209 PRK14722 flhF flagellar biosyn 96.5 0.012 2.7E-07 64.0 10.1 131 162-323 137-269 (374)
210 PRK13826 Dtr system oriT relax 96.5 0.041 8.8E-07 67.6 15.0 138 131-311 366-505 (1102)
211 PRK14974 cell division protein 96.5 0.029 6.3E-07 60.5 12.3 54 271-324 222-276 (336)
212 KOG0298 DEAD box-containing he 96.4 0.0055 1.2E-07 73.6 7.1 154 162-320 374-558 (1394)
213 PRK06921 hypothetical protein; 96.4 0.028 6E-07 58.8 11.8 45 161-211 116-160 (266)
214 PRK05703 flhF flagellar biosyn 96.4 0.041 8.8E-07 61.5 13.4 128 162-323 221-354 (424)
215 smart00382 AAA ATPases associa 96.3 0.0081 1.8E-07 54.9 6.1 41 162-208 2-42 (148)
216 PRK11889 flhF flagellar biosyn 96.2 0.045 9.9E-07 59.6 11.9 128 163-323 242-374 (436)
217 PF00448 SRP54: SRP54-type pro 96.2 0.035 7.6E-07 55.3 10.1 129 165-322 4-135 (196)
218 KOG1805 DNA replication helica 96.1 0.018 4E-07 67.6 9.0 125 145-284 667-809 (1100)
219 COG1419 FlhF Flagellar GTP-bin 96.1 0.092 2E-06 57.1 13.7 134 161-325 202-337 (407)
220 PHA02533 17 large terminase pr 96.1 0.04 8.7E-07 63.2 11.3 148 147-312 59-210 (534)
221 PRK08727 hypothetical protein; 95.9 0.035 7.5E-07 56.9 9.2 43 271-313 93-136 (233)
222 PRK07952 DNA replication prote 95.8 0.13 2.8E-06 53.0 12.7 109 163-317 100-210 (244)
223 COG1875 NYN ribonuclease and A 95.8 0.043 9.3E-07 58.3 9.0 65 141-208 222-288 (436)
224 PRK06893 DNA replication initi 95.8 0.039 8.4E-07 56.4 8.7 47 270-316 90-138 (229)
225 PRK08116 hypothetical protein; 95.7 0.19 4.2E-06 52.6 13.9 109 163-317 115-226 (268)
226 PRK06835 DNA replication prote 95.7 0.088 1.9E-06 56.7 11.5 44 162-212 183-226 (329)
227 COG1444 Predicted P-loop ATPas 95.7 0.062 1.3E-06 62.9 10.9 147 141-313 208-357 (758)
228 PRK05642 DNA replication initi 95.7 0.047 1E-06 56.0 9.1 44 271-314 97-141 (234)
229 cd01120 RecA-like_NTPases RecA 95.7 0.15 3.2E-06 48.2 11.9 44 270-313 84-137 (165)
230 PF03354 Terminase_1: Phage Te 95.7 0.039 8.4E-07 62.9 9.0 149 150-309 1-160 (477)
231 PRK10919 ATP-dependent DNA hel 95.6 0.02 4.3E-07 68.0 6.8 71 147-221 2-72 (672)
232 PRK11054 helD DNA helicase IV; 95.6 0.038 8.1E-07 65.4 9.0 72 144-219 193-264 (684)
233 KOG1133 Helicase of the DEAD s 95.6 0.56 1.2E-05 53.8 17.3 111 362-476 622-779 (821)
234 PF05970 PIF1: PIF1-like helic 95.6 0.049 1.1E-06 59.8 9.1 59 148-212 2-66 (364)
235 PRK12377 putative replication 95.5 0.094 2E-06 54.1 10.5 104 162-312 101-206 (248)
236 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.063 1.4E-06 54.4 9.3 41 273-313 92-133 (226)
237 KOG0989 Replication factor C, 95.5 0.047 1E-06 56.7 8.0 46 267-313 125-170 (346)
238 PF05127 Helicase_RecD: Helica 95.5 0.0075 1.6E-07 58.6 2.0 124 166-313 1-124 (177)
239 PRK09112 DNA polymerase III su 95.4 0.081 1.7E-06 57.6 10.1 40 269-309 139-178 (351)
240 TIGR01074 rep ATP-dependent DN 95.4 0.054 1.2E-06 64.5 9.5 90 148-262 2-91 (664)
241 PRK07764 DNA polymerase III su 95.4 0.14 3.1E-06 61.7 12.8 40 269-309 118-157 (824)
242 COG1484 DnaC DNA replication p 95.4 0.085 1.8E-06 54.8 9.5 50 161-217 104-153 (254)
243 TIGR02760 TraI_TIGR conjugativ 95.3 0.81 1.8E-05 60.6 20.2 135 147-311 429-566 (1960)
244 PRK08084 DNA replication initi 95.3 0.083 1.8E-06 54.2 9.1 43 272-314 98-142 (235)
245 PRK00149 dnaA chromosomal repl 95.2 0.1 2.2E-06 59.0 10.3 108 163-316 149-258 (450)
246 PRK14087 dnaA chromosomal repl 95.1 0.12 2.6E-06 58.2 10.7 108 163-314 142-250 (450)
247 TIGR01075 uvrD DNA helicase II 95.1 0.035 7.6E-07 66.6 6.8 72 146-221 3-74 (715)
248 PRK12323 DNA polymerase III su 95.1 0.096 2.1E-06 60.6 9.8 41 269-310 122-162 (700)
249 PRK08769 DNA polymerase III su 94.9 0.16 3.6E-06 54.3 10.5 145 145-312 2-153 (319)
250 TIGR00362 DnaA chromosomal rep 94.9 0.14 3E-06 57.1 10.3 43 163-210 137-179 (405)
251 TIGR02785 addA_Gpos recombinat 94.9 0.09 1.9E-06 66.7 9.7 124 148-282 2-126 (1232)
252 PRK05986 cob(I)alamin adenolsy 94.9 0.056 1.2E-06 53.1 6.1 146 161-322 21-168 (191)
253 COG1474 CDC6 Cdc6-related prot 94.8 0.3 6.4E-06 53.5 12.3 34 156-190 34-69 (366)
254 PRK11773 uvrD DNA-dependent he 94.8 0.054 1.2E-06 65.0 7.2 71 147-221 9-79 (721)
255 PRK00771 signal recognition pa 94.8 0.26 5.6E-06 55.1 12.0 50 273-322 177-227 (437)
256 PRK14958 DNA polymerase III su 94.8 0.26 5.7E-06 56.4 12.3 39 270-309 118-156 (509)
257 PRK07003 DNA polymerase III su 94.8 0.24 5.3E-06 58.2 11.8 39 270-309 118-156 (830)
258 COG2805 PilT Tfp pilus assembl 94.8 0.065 1.4E-06 55.6 6.4 51 121-190 102-152 (353)
259 PRK12727 flagellar biosynthesi 94.7 0.47 1E-05 53.9 13.4 128 162-323 350-481 (559)
260 PTZ00293 thymidine kinase; Pro 94.7 0.14 3.1E-06 51.1 8.5 39 162-206 4-42 (211)
261 PRK13894 conjugal transfer ATP 94.6 0.15 3.3E-06 54.6 9.3 66 137-208 124-190 (319)
262 PF13177 DNA_pol3_delta2: DNA 94.6 0.18 4E-06 48.5 9.0 43 270-313 101-143 (162)
263 PRK14712 conjugal transfer nic 94.6 0.18 4E-06 64.1 11.1 62 147-212 835-900 (1623)
264 PRK07471 DNA polymerase III su 94.6 0.18 4E-06 55.1 10.0 134 164-312 43-181 (365)
265 PRK09111 DNA polymerase III su 94.6 0.22 4.7E-06 58.0 11.0 40 269-309 130-169 (598)
266 COG3973 Superfamily I DNA and 94.5 0.13 2.9E-06 57.9 8.6 90 130-220 187-284 (747)
267 PLN03025 replication factor C 94.5 0.3 6.6E-06 52.5 11.3 41 270-312 98-138 (319)
268 PRK13709 conjugal transfer nic 94.5 0.24 5.1E-06 63.9 11.9 64 147-212 967-1032(1747)
269 cd01124 KaiC KaiC is a circadi 94.4 0.16 3.4E-06 49.7 8.3 48 165-219 2-49 (187)
270 TIGR02881 spore_V_K stage V sp 94.4 0.11 2.4E-06 54.2 7.6 17 163-179 43-59 (261)
271 PHA03333 putative ATPase subun 94.4 0.73 1.6E-05 53.5 14.2 152 145-313 167-333 (752)
272 PRK09183 transposase/IS protei 94.4 0.24 5.2E-06 51.6 9.8 21 159-179 99-119 (259)
273 PRK06731 flhF flagellar biosyn 94.3 0.59 1.3E-05 48.9 12.6 130 161-323 74-208 (270)
274 PRK14949 DNA polymerase III su 94.3 0.53 1.1E-05 56.5 13.4 44 270-315 118-161 (944)
275 PF05876 Terminase_GpA: Phage 94.3 0.11 2.5E-06 60.0 7.9 124 147-284 16-147 (557)
276 PRK14961 DNA polymerase III su 94.3 0.39 8.5E-06 52.7 11.8 39 269-308 117-155 (363)
277 PRK14086 dnaA chromosomal repl 94.3 0.18 4E-06 58.2 9.4 47 270-316 376-424 (617)
278 TIGR01073 pcrA ATP-dependent D 94.3 0.15 3.2E-06 61.4 9.1 72 146-221 3-74 (726)
279 PRK14956 DNA polymerase III su 94.2 0.11 2.3E-06 58.4 7.2 16 164-179 42-57 (484)
280 PRK12422 chromosomal replicati 94.2 0.32 6.8E-06 54.8 11.0 48 270-317 201-250 (445)
281 PF00308 Bac_DnaA: Bacterial d 94.2 0.2 4.3E-06 50.9 8.6 47 270-316 96-144 (219)
282 PRK14952 DNA polymerase III su 94.2 0.4 8.8E-06 55.6 12.1 40 269-309 116-155 (584)
283 PRK14964 DNA polymerase III su 94.2 0.38 8.3E-06 54.5 11.6 42 269-312 114-155 (491)
284 PRK05707 DNA polymerase III su 94.1 0.24 5.2E-06 53.4 9.5 42 148-190 4-49 (328)
285 cd00561 CobA_CobO_BtuR ATP:cor 94.1 0.5 1.1E-05 45.2 10.6 53 269-321 93-147 (159)
286 PRK11331 5-methylcytosine-spec 94.1 0.17 3.7E-06 56.3 8.3 32 148-179 180-211 (459)
287 PRK12402 replication factor C 94.1 0.27 5.9E-06 53.1 10.0 38 270-308 124-161 (337)
288 PRK14088 dnaA chromosomal repl 93.9 0.4 8.6E-06 54.0 11.1 49 271-319 194-244 (440)
289 TIGR00708 cobA cob(I)alamin ad 93.9 0.11 2.3E-06 50.4 5.6 54 269-322 95-150 (173)
290 PTZ00112 origin recognition co 93.9 0.31 6.8E-06 57.9 10.2 24 164-188 782-806 (1164)
291 PRK14723 flhF flagellar biosyn 93.8 0.35 7.6E-06 57.3 10.8 17 163-179 186-202 (767)
292 PRK08691 DNA polymerase III su 93.8 0.45 9.7E-06 55.7 11.3 40 269-309 117-156 (709)
293 TIGR01547 phage_term_2 phage t 93.7 0.19 4.2E-06 55.8 8.2 135 165-315 4-143 (396)
294 PF05729 NACHT: NACHT domain 93.7 0.29 6.2E-06 46.5 8.4 45 165-210 3-47 (166)
295 TIGR01425 SRP54_euk signal rec 93.7 0.71 1.5E-05 51.4 12.2 130 164-323 102-235 (429)
296 PRK14721 flhF flagellar biosyn 93.7 0.37 8.1E-06 53.5 10.1 131 162-323 191-323 (420)
297 PRK14951 DNA polymerase III su 93.7 0.3 6.5E-06 56.9 9.7 43 269-313 122-164 (618)
298 COG4962 CpaF Flp pilus assembl 93.6 0.13 2.8E-06 54.7 6.0 61 143-210 153-214 (355)
299 PF00004 AAA: ATPase family as 93.6 0.11 2.3E-06 47.5 4.9 14 165-178 1-14 (132)
300 PRK08939 primosomal protein Dn 93.6 0.83 1.8E-05 48.8 12.3 49 270-318 216-267 (306)
301 PHA02544 44 clamp loader, smal 93.6 0.34 7.4E-06 51.9 9.5 39 271-309 100-138 (316)
302 PRK06645 DNA polymerase III su 93.6 0.41 9E-06 54.6 10.5 17 163-179 44-60 (507)
303 TIGR00064 ftsY signal recognit 93.5 0.84 1.8E-05 47.9 12.0 54 270-323 153-213 (272)
304 TIGR03015 pepcterm_ATPase puta 93.5 1.2 2.5E-05 46.5 13.1 32 148-179 24-60 (269)
305 PRK08903 DnaA regulatory inact 93.5 0.36 7.9E-06 49.0 9.1 42 272-314 91-133 (227)
306 KOG1513 Nuclear helicase MOP-3 93.5 0.072 1.6E-06 61.3 4.1 158 145-312 262-454 (1300)
307 TIGR02782 TrbB_P P-type conjug 93.5 0.81 1.8E-05 48.7 12.0 66 138-209 109-175 (299)
308 PRK14960 DNA polymerase III su 93.4 0.49 1.1E-05 55.0 10.8 40 270-311 117-156 (702)
309 PRK12726 flagellar biosynthesi 93.4 1.1 2.3E-05 49.0 12.7 18 162-179 206-223 (407)
310 PRK10917 ATP-dependent DNA hel 93.4 0.44 9.5E-06 56.8 10.8 78 369-446 309-391 (681)
311 COG0470 HolB ATPase involved i 93.2 0.29 6.3E-06 52.4 8.4 28 162-190 23-51 (325)
312 PRK00411 cdc6 cell division co 93.2 0.46 9.9E-06 52.7 10.1 24 163-187 56-79 (394)
313 PRK13833 conjugal transfer pro 93.2 0.25 5.5E-06 53.0 7.6 64 140-209 123-187 (323)
314 PRK12724 flagellar biosynthesi 93.1 1 2.3E-05 49.8 12.3 53 271-323 299-356 (432)
315 PHA03368 DNA packaging termina 93.0 0.54 1.2E-05 54.3 10.1 136 162-315 254-393 (738)
316 PRK07994 DNA polymerase III su 93.0 0.5 1.1E-05 55.3 10.1 38 270-308 118-155 (647)
317 cd01122 GP4d_helicase GP4d_hel 92.9 0.35 7.7E-06 50.5 8.3 117 159-285 27-154 (271)
318 PRK06871 DNA polymerase III su 92.9 0.55 1.2E-05 50.5 9.7 42 269-311 105-146 (325)
319 PRK06964 DNA polymerase III su 92.8 0.75 1.6E-05 49.8 10.7 41 149-190 3-48 (342)
320 PRK14957 DNA polymerase III su 92.8 0.69 1.5E-05 53.2 10.8 40 269-309 117-156 (546)
321 PRK07940 DNA polymerase III su 92.7 0.76 1.7E-05 50.8 10.8 46 269-316 115-160 (394)
322 PRK05896 DNA polymerase III su 92.7 0.37 8.1E-06 55.6 8.5 42 270-313 118-159 (605)
323 PRK14969 DNA polymerase III su 92.7 0.85 1.8E-05 52.6 11.5 40 269-309 117-156 (527)
324 COG1110 Reverse gyrase [DNA re 92.7 0.43 9.3E-06 57.1 8.9 72 359-430 114-191 (1187)
325 COG2256 MGS1 ATPase related to 92.5 0.31 6.6E-06 52.8 6.9 18 163-180 49-66 (436)
326 PRK14955 DNA polymerase III su 92.4 0.53 1.1E-05 52.3 9.1 41 269-311 125-165 (397)
327 PRK04195 replication factor C 92.4 0.77 1.7E-05 52.4 10.6 17 162-178 39-55 (482)
328 PF05621 TniB: Bacterial TniB 92.3 0.73 1.6E-05 48.5 9.4 114 163-304 62-180 (302)
329 PRK05580 primosome assembly pr 92.3 0.53 1.1E-05 56.1 9.5 77 370-447 190-267 (679)
330 PRK06995 flhF flagellar biosyn 92.3 0.52 1.1E-05 53.2 8.9 18 162-179 256-273 (484)
331 TIGR02760 TraI_TIGR conjugativ 92.3 0.7 1.5E-05 61.1 11.3 62 146-212 1018-1084(1960)
332 PF02572 CobA_CobO_BtuR: ATP:c 92.3 0.82 1.8E-05 44.3 9.0 53 269-321 94-148 (172)
333 PRK14963 DNA polymerase III su 92.3 0.72 1.6E-05 52.8 10.1 23 165-188 39-61 (504)
334 PF06745 KaiC: KaiC; InterPro 92.3 0.34 7.5E-06 49.2 6.9 133 162-312 19-160 (226)
335 COG1435 Tdk Thymidine kinase [ 92.2 0.61 1.3E-05 45.7 8.0 90 164-284 6-95 (201)
336 PRK14965 DNA polymerase III su 92.2 0.72 1.6E-05 53.8 10.2 40 269-309 117-156 (576)
337 PRK05563 DNA polymerase III su 92.1 0.58 1.2E-05 54.3 9.2 42 269-312 117-158 (559)
338 CHL00181 cbbX CbbX; Provisiona 92.1 0.53 1.2E-05 49.8 8.2 18 162-179 59-76 (287)
339 PRK10867 signal recognition pa 92.0 1.6 3.4E-05 48.9 12.2 16 164-179 102-117 (433)
340 TIGR00959 ffh signal recogniti 91.8 1.6 3.5E-05 48.7 12.0 16 164-179 101-116 (428)
341 PRK14962 DNA polymerase III su 91.8 0.97 2.1E-05 51.3 10.3 16 164-179 38-53 (472)
342 PRK14950 DNA polymerase III su 91.6 0.79 1.7E-05 53.6 9.7 41 269-311 118-158 (585)
343 COG3972 Superfamily I DNA and 91.5 0.5 1.1E-05 52.2 7.2 141 136-283 152-307 (660)
344 PRK06090 DNA polymerase III su 91.5 1.1 2.4E-05 48.0 9.9 42 269-311 106-147 (319)
345 KOG0298 DEAD box-containing he 91.5 0.53 1.1E-05 57.4 8.0 105 367-476 1218-1325(1394)
346 TIGR03499 FlhF flagellar biosy 91.4 0.32 7E-06 51.3 5.7 18 162-179 194-211 (282)
347 PRK11034 clpA ATP-dependent Cl 91.3 1.7 3.6E-05 52.3 12.1 44 273-316 280-327 (758)
348 TIGR02928 orc1/cdc6 family rep 91.3 0.7 1.5E-05 50.5 8.5 24 163-187 41-64 (365)
349 COG2109 BtuR ATP:corrinoid ade 91.3 1.1 2.3E-05 43.7 8.4 54 270-323 121-176 (198)
350 PRK08533 flagellar accessory p 91.3 1.5 3.3E-05 44.7 10.3 51 161-218 23-73 (230)
351 TIGR03877 thermo_KaiC_1 KaiC d 91.3 0.86 1.9E-05 46.8 8.5 52 162-220 21-72 (237)
352 PRK07993 DNA polymerase III su 91.2 0.86 1.9E-05 49.3 8.8 42 269-311 106-147 (334)
353 TIGR02880 cbbX_cfxQ probable R 91.2 0.73 1.6E-05 48.7 8.2 18 162-179 58-75 (284)
354 PRK14954 DNA polymerase III su 91.2 1.9 4E-05 50.6 12.1 40 269-309 125-164 (620)
355 TIGR00595 priA primosomal prot 91.2 0.67 1.5E-05 53.1 8.4 76 370-446 25-101 (505)
356 COG2804 PulE Type II secretory 91.2 0.54 1.2E-05 52.6 7.2 41 149-190 243-285 (500)
357 PRK13342 recombination factor 91.2 1.1 2.4E-05 50.0 10.0 17 163-179 37-53 (413)
358 KOG0741 AAA+-type ATPase [Post 91.1 2.5 5.4E-05 47.4 12.0 139 130-317 494-654 (744)
359 PF04931 DNA_pol_phi: DNA poly 91.0 0.16 3.4E-06 61.6 3.3 10 132-141 737-746 (784)
360 TIGR00643 recG ATP-dependent D 91.0 1 2.2E-05 53.3 9.9 78 369-446 283-365 (630)
361 KOG0344 ATP-dependent RNA heli 90.9 2.6 5.7E-05 47.7 12.2 97 171-281 366-466 (593)
362 PHA00729 NTP-binding motif con 90.8 1.6 3.4E-05 44.3 9.7 74 248-322 60-138 (226)
363 TIGR00580 mfd transcription-re 90.5 1.2 2.6E-05 54.7 10.1 77 370-446 500-581 (926)
364 PF13173 AAA_14: AAA domain 90.5 1.9 4E-05 39.5 9.2 36 272-310 62-97 (128)
365 PRK14873 primosome assembly pr 90.5 1.1 2.3E-05 53.0 9.4 90 356-446 172-265 (665)
366 KOG0732 AAA+-type ATPase conta 90.4 0.41 8.9E-06 58.0 5.8 63 251-315 345-417 (1080)
367 KOG0991 Replication factor C, 90.3 0.67 1.5E-05 46.5 6.3 22 163-186 49-70 (333)
368 PRK08699 DNA polymerase III su 90.3 4.5 9.7E-05 43.6 13.3 41 269-311 111-151 (325)
369 KOG0744 AAA+-type ATPase [Post 90.3 1.6 3.4E-05 46.1 9.1 114 162-287 177-325 (423)
370 TIGR00678 holB DNA polymerase 90.2 2.7 5.7E-05 41.3 10.7 41 269-311 94-134 (188)
371 PF01695 IstB_IS21: IstB-like 90.2 0.42 9E-06 46.8 4.9 47 158-211 43-89 (178)
372 COG0552 FtsY Signal recognitio 90.1 4.1 8.8E-05 43.4 12.2 130 165-323 142-280 (340)
373 PRK14948 DNA polymerase III su 90.1 0.83 1.8E-05 53.6 7.9 25 163-188 39-63 (620)
374 cd03115 SRP The signal recogni 90.0 5.3 0.00012 38.5 12.5 15 165-179 3-17 (173)
375 PRK13341 recombination factor 90.0 1.5 3.2E-05 52.5 10.0 17 163-179 53-69 (725)
376 PRK00440 rfc replication facto 90.0 3.4 7.3E-05 44.1 12.1 38 271-309 102-139 (319)
377 PF05496 RuvB_N: Holliday junc 89.7 0.41 8.9E-06 48.2 4.4 16 164-179 52-67 (233)
378 PRK13851 type IV secretion sys 89.7 0.42 9E-06 51.8 4.8 44 159-209 159-202 (344)
379 TIGR02639 ClpA ATP-dependent C 89.7 3.6 7.7E-05 49.6 13.2 18 162-179 203-220 (731)
380 TIGR02533 type_II_gspE general 89.7 0.86 1.9E-05 51.9 7.5 44 140-187 221-266 (486)
381 PRK08451 DNA polymerase III su 89.6 1.3 2.9E-05 50.7 8.9 40 269-309 115-154 (535)
382 PRK07399 DNA polymerase III su 89.6 3.3 7.1E-05 44.4 11.5 56 251-310 106-161 (314)
383 COG0593 DnaA ATPase involved i 89.6 1.5 3.1E-05 48.5 8.8 47 271-317 175-223 (408)
384 PRK04841 transcriptional regul 89.5 2.4 5.1E-05 52.4 11.8 41 273-313 123-163 (903)
385 KOG0742 AAA+-type ATPase [Post 89.4 0.6 1.3E-05 50.5 5.4 16 163-178 385-400 (630)
386 PRK13764 ATPase; Provisional 89.3 1.6 3.4E-05 50.8 9.3 26 161-187 256-281 (602)
387 PRK14959 DNA polymerase III su 89.3 1.3 2.8E-05 51.6 8.6 17 164-180 40-56 (624)
388 TIGR03689 pup_AAA proteasome A 89.3 1.4 3.1E-05 50.2 8.8 17 162-178 216-232 (512)
389 KOG1513 Nuclear helicase MOP-3 89.1 0.52 1.1E-05 54.6 5.0 77 412-488 849-937 (1300)
390 PRK10436 hypothetical protein; 89.0 0.88 1.9E-05 51.4 6.9 37 150-187 204-242 (462)
391 PRK10416 signal recognition pa 88.9 5.1 0.00011 43.0 12.4 54 270-323 195-255 (318)
392 TIGR02538 type_IV_pilB type IV 88.9 0.99 2.2E-05 52.5 7.5 44 140-187 295-340 (564)
393 cd01126 TraG_VirD4 The TraG/Tr 88.9 0.49 1.1E-05 52.3 4.8 47 164-218 1-47 (384)
394 KOG2036 Predicted P-loop ATPas 88.9 3.3 7.1E-05 47.7 11.0 64 149-217 255-325 (1011)
395 cd00984 DnaB_C DnaB helicase C 88.9 3 6.6E-05 42.6 10.3 38 161-203 12-49 (242)
396 KOG0745 Putative ATP-dependent 88.8 0.45 9.7E-06 51.9 4.1 25 162-188 226-250 (564)
397 COG0513 SrmB Superfamily II DN 88.8 1.4 3.1E-05 50.6 8.6 68 373-444 102-180 (513)
398 COG4626 Phage terminase-like p 88.7 2.6 5.7E-05 47.7 10.2 146 147-310 61-223 (546)
399 PF00437 T2SE: Type II/IV secr 88.7 0.59 1.3E-05 48.9 5.0 43 160-208 125-167 (270)
400 KOG0739 AAA+-type ATPase [Post 88.6 7 0.00015 40.9 12.2 125 156-330 155-296 (439)
401 TIGR02525 plasmid_TraJ plasmid 88.6 0.94 2E-05 49.7 6.6 27 162-189 149-175 (372)
402 PRK13900 type IV secretion sys 88.6 1.1 2.4E-05 48.5 7.0 43 160-209 158-200 (332)
403 PF06733 DEAD_2: DEAD_2; Inte 88.6 0.28 6.1E-06 47.7 2.3 44 242-285 115-159 (174)
404 TIGR03881 KaiC_arch_4 KaiC dom 88.5 2.4 5.1E-05 43.1 9.2 25 162-186 20-44 (229)
405 KOG0733 Nuclear AAA ATPase (VC 88.5 2.3 5E-05 48.5 9.4 48 271-318 604-661 (802)
406 cd01129 PulE-GspE PulE/GspE Th 88.5 0.95 2.1E-05 47.3 6.3 44 140-187 59-104 (264)
407 TIGR02524 dot_icm_DotB Dot/Icm 88.3 0.94 2E-05 49.5 6.3 26 161-187 133-158 (358)
408 PF10593 Z1: Z1 domain; Inter 88.3 1.5 3.2E-05 45.1 7.5 96 385-486 102-202 (239)
409 COG2909 MalT ATP-dependent tra 88.3 1.7 3.7E-05 51.5 8.6 41 273-313 131-171 (894)
410 PRK10689 transcription-repair 88.3 2.1 4.6E-05 53.8 10.1 76 369-444 648-728 (1147)
411 KOG2028 ATPase related to the 88.2 1.6 3.5E-05 46.6 7.6 49 163-217 163-211 (554)
412 PF01443 Viral_helicase1: Vira 88.2 0.55 1.2E-05 47.7 4.3 19 165-184 1-19 (234)
413 TIGR03600 phage_DnaB phage rep 88.1 2.9 6.3E-05 46.8 10.3 115 160-285 192-319 (421)
414 PRK06067 flagellar accessory p 87.9 2.9 6.2E-05 42.7 9.3 51 162-219 25-75 (234)
415 PRK14953 DNA polymerase III su 87.9 5.7 0.00012 45.4 12.5 25 675-699 449-473 (486)
416 PRK06904 replicative DNA helic 87.9 3.9 8.4E-05 46.5 11.1 115 162-285 221-348 (472)
417 PF02456 Adeno_IVa2: Adenoviru 87.8 0.96 2.1E-05 47.3 5.5 40 165-209 90-130 (369)
418 PRK07133 DNA polymerase III su 87.6 2 4.4E-05 50.8 8.9 41 269-311 116-156 (725)
419 KOG0331 ATP-dependent RNA heli 87.4 9.7 0.00021 43.3 13.6 90 370-463 165-272 (519)
420 cd01130 VirB11-like_ATPase Typ 87.4 1.1 2.3E-05 44.1 5.7 32 147-178 9-41 (186)
421 PRK06305 DNA polymerase III su 87.3 1.8 3.9E-05 48.9 8.0 38 269-307 119-156 (451)
422 KOG0333 U5 snRNP-like RNA heli 87.3 2.1 4.6E-05 47.7 8.1 70 196-276 517-590 (673)
423 PRK07414 cob(I)yrinic acid a,c 87.3 1.8 3.9E-05 42.1 6.9 53 269-321 113-167 (178)
424 PF02534 T4SS-DNA_transf: Type 87.1 0.71 1.5E-05 52.5 4.8 48 163-218 45-92 (469)
425 TIGR03878 thermo_KaiC_2 KaiC d 87.1 2.8 6E-05 43.7 8.8 36 162-203 36-71 (259)
426 PF05707 Zot: Zonular occluden 87.0 1.1 2.4E-05 44.3 5.6 18 165-182 3-20 (193)
427 KOG0738 AAA+-type ATPase [Post 86.9 2.6 5.6E-05 45.6 8.2 22 157-178 235-261 (491)
428 KOG1133 Helicase of the DEAD s 86.8 0.69 1.5E-05 53.1 4.2 41 147-187 15-59 (821)
429 KOG0701 dsRNA-specific nucleas 86.8 0.42 9.1E-06 60.4 2.8 94 372-465 294-399 (1606)
430 PRK06647 DNA polymerase III su 86.7 4.5 9.8E-05 47.0 11.0 41 269-311 117-157 (563)
431 COG0630 VirB11 Type IV secreto 86.7 0.93 2E-05 48.6 5.0 57 145-208 125-182 (312)
432 PRK03992 proteasome-activating 86.7 2.2 4.8E-05 47.3 8.2 16 163-178 166-181 (389)
433 PRK08058 DNA polymerase III su 86.6 7 0.00015 42.2 11.8 40 269-309 108-147 (329)
434 TIGR02397 dnaX_nterm DNA polym 86.5 3.5 7.5E-05 44.8 9.6 24 164-188 38-61 (355)
435 TIGR00635 ruvB Holliday juncti 86.4 2 4.3E-05 45.7 7.5 16 163-178 31-46 (305)
436 PRK09087 hypothetical protein; 86.4 1.7 3.6E-05 44.3 6.6 40 274-315 90-130 (226)
437 PF03969 AFG1_ATPase: AFG1-lik 86.4 8.7 0.00019 42.1 12.4 110 162-316 62-172 (362)
438 PF03237 Terminase_6: Terminas 86.4 6.1 0.00013 42.7 11.6 143 166-326 1-153 (384)
439 TIGR01650 PD_CobS cobaltochela 86.4 1.5 3.3E-05 46.9 6.4 24 155-178 57-80 (327)
440 KOG0338 ATP-dependent RNA heli 86.1 4.8 0.0001 44.9 10.0 83 367-453 249-342 (691)
441 PRK11823 DNA repair protein Ra 86.1 2.8 6E-05 47.4 8.6 51 162-219 80-130 (446)
442 PRK14971 DNA polymerase III su 86.0 1.6 3.4E-05 51.3 6.9 41 269-311 119-159 (614)
443 COG1200 RecG RecG-like helicas 86.0 3.2 6.8E-05 48.2 9.0 78 369-446 310-392 (677)
444 PRK05564 DNA polymerase III su 86.0 3.9 8.4E-05 43.8 9.4 41 269-311 91-131 (313)
445 PF02606 LpxK: Tetraacyldisacc 86.0 21 0.00045 38.5 14.9 221 172-429 47-288 (326)
446 TIGR02858 spore_III_AA stage I 85.7 8 0.00017 40.5 11.3 32 155-188 101-135 (270)
447 TIGR00767 rho transcription te 85.6 2 4.4E-05 47.2 7.0 26 161-187 167-192 (415)
448 PRK14701 reverse gyrase; Provi 85.5 3.5 7.6E-05 53.6 10.1 61 369-429 121-187 (1638)
449 KOG2004 Mitochondrial ATP-depe 85.5 6.4 0.00014 45.9 10.9 94 148-284 416-518 (906)
450 PRK04328 hypothetical protein; 85.4 5.6 0.00012 41.1 9.9 51 162-219 23-73 (249)
451 TIGR00763 lon ATP-dependent pr 85.3 3.2 7E-05 50.3 9.3 17 162-178 347-363 (775)
452 KOG0060 Long-chain acyl-CoA tr 85.2 2.3 4.9E-05 48.3 7.1 47 251-299 570-616 (659)
453 KOG0339 ATP-dependent RNA heli 85.0 7.1 0.00015 43.6 10.6 69 372-444 298-376 (731)
454 COG1198 PriA Primosomal protei 85.0 1.7 3.6E-05 51.5 6.4 87 356-443 229-318 (730)
455 TIGR01420 pilT_fam pilus retra 84.9 2 4.4E-05 46.7 6.6 42 162-208 122-163 (343)
456 cd01121 Sms Sms (bacterial rad 84.8 4.2 9.1E-05 44.7 9.1 51 162-219 82-132 (372)
457 PRK13897 type IV secretion sys 84.6 1.4 3E-05 51.5 5.5 57 163-231 159-215 (606)
458 KOG0347 RNA helicase [RNA proc 84.6 2.5 5.5E-05 47.4 7.1 54 371-428 264-321 (731)
459 PF04931 DNA_pol_phi: DNA poly 84.3 0.89 1.9E-05 55.2 4.0 9 65-73 704-712 (784)
460 PRK04537 ATP-dependent RNA hel 84.2 5.6 0.00012 46.5 10.3 73 196-279 257-333 (572)
461 cd00268 DEADc DEAD-box helicas 84.1 19 0.00041 35.4 12.9 74 369-446 68-151 (203)
462 COG2255 RuvB Holliday junction 84.1 1.8 4E-05 44.9 5.4 17 163-179 53-69 (332)
463 TIGR03346 chaperone_ClpB ATP-d 84.1 5.5 0.00012 48.9 10.6 17 163-179 195-211 (852)
464 COG2842 Uncharacterized ATPase 83.9 3.8 8.2E-05 42.9 7.7 115 157-313 89-203 (297)
465 KOG2543 Origin recognition com 83.8 3.8 8.3E-05 44.3 7.8 45 272-316 116-162 (438)
466 PRK11634 ATP-dependent RNA hel 83.8 3.8 8.2E-05 48.4 8.8 71 370-444 74-155 (629)
467 PF12846 AAA_10: AAA-like doma 83.6 2.8 6.1E-05 44.0 7.0 43 162-210 1-43 (304)
468 PRK05973 replicative DNA helic 83.5 1.5 3.3E-05 44.9 4.6 81 131-219 24-114 (237)
469 PRK08506 replicative DNA helic 83.5 3.9 8.5E-05 46.5 8.4 112 162-284 192-315 (472)
470 PHA03372 DNA packaging termina 83.3 9.9 0.00021 43.8 11.2 130 162-313 202-338 (668)
471 COG0541 Ffh Signal recognition 83.3 11 0.00024 41.7 11.2 130 165-323 103-235 (451)
472 TIGR01243 CDC48 AAA family ATP 83.2 6.5 0.00014 47.5 10.6 17 162-178 212-228 (733)
473 cd01393 recA_like RecA is a b 83.2 2.3 5E-05 43.0 5.9 45 162-206 19-63 (226)
474 COG1074 RecB ATP-dependent exo 83.2 1.7 3.6E-05 55.0 5.7 56 161-217 15-70 (1139)
475 PRK14970 DNA polymerase III su 82.9 7.3 0.00016 42.7 10.1 17 163-179 40-56 (367)
476 CHL00095 clpC Clp protease ATP 82.8 5.1 0.00011 49.0 9.6 17 163-179 201-217 (821)
477 KOG0058 Peptide exporter, ABC 82.8 2.7 5.9E-05 49.0 6.7 42 269-311 620-661 (716)
478 PHA00012 I assembly protein 82.7 13 0.00028 39.8 11.0 24 165-188 4-27 (361)
479 TIGR03819 heli_sec_ATPase heli 82.6 2.7 5.8E-05 45.6 6.4 63 137-208 154-217 (340)
480 cd03239 ABC_SMC_head The struc 82.6 1 2.2E-05 44.1 2.8 42 270-311 115-157 (178)
481 PF01637 Arch_ATPase: Archaeal 82.5 2.1 4.6E-05 42.9 5.4 40 273-312 120-165 (234)
482 cd03221 ABCF_EF-3 ABCF_EF-3 E 82.4 5.1 0.00011 37.6 7.5 40 270-312 87-126 (144)
483 PRK11776 ATP-dependent RNA hel 82.3 4.5 9.7E-05 45.9 8.4 74 370-447 72-156 (460)
484 PRK00080 ruvB Holliday junctio 82.2 2.4 5.1E-05 45.8 5.8 17 163-179 52-68 (328)
485 CHL00176 ftsH cell division pr 82.2 7.4 0.00016 45.9 10.2 44 273-316 277-333 (638)
486 PRK08840 replicative DNA helic 82.1 9.8 0.00021 43.2 10.9 115 161-284 216-342 (464)
487 TIGR01243 CDC48 AAA family ATP 82.1 4 8.6E-05 49.3 8.2 44 272-315 547-601 (733)
488 TIGR03345 VI_ClpV1 type VI sec 82.1 12 0.00027 45.7 12.4 27 152-178 192-224 (852)
489 COG1219 ClpX ATP-dependent pro 81.9 0.87 1.9E-05 47.9 2.2 19 161-179 96-114 (408)
490 COG4555 NatA ABC-type Na+ tran 81.9 4.3 9.3E-05 40.3 6.7 53 269-321 149-201 (245)
491 COG1618 Predicted nucleotide k 81.8 0.9 2E-05 43.2 2.0 119 164-300 7-131 (179)
492 TIGR02237 recomb_radB DNA repa 81.7 4.7 0.0001 40.2 7.4 38 162-205 12-49 (209)
493 cd01128 rho_factor Transcripti 81.3 3.3 7.2E-05 42.8 6.3 20 159-178 13-32 (249)
494 COG0466 Lon ATP-dependent Lon 81.3 3.9 8.4E-05 47.7 7.2 53 228-286 380-432 (782)
495 cd03276 ABC_SMC6_euk Eukaryoti 81.3 11 0.00024 37.4 9.9 47 270-316 130-179 (198)
496 TIGR02868 CydC thiol reductant 81.3 2.4 5.2E-05 49.0 5.9 26 161-188 360-385 (529)
497 PRK11192 ATP-dependent RNA hel 81.2 7.6 0.00016 43.6 9.7 71 196-277 245-319 (434)
498 cd01125 repA Hexameric Replica 81.1 8.8 0.00019 39.3 9.3 52 164-215 3-63 (239)
499 PF03796 DnaB_C: DnaB-like hel 81.0 7.6 0.00016 40.3 9.0 115 162-285 19-144 (259)
500 TIGR01389 recQ ATP-dependent D 81.0 16 0.00034 43.0 12.5 123 370-492 53-187 (591)
No 1
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-103 Score=821.49 Aligned_cols=461 Identities=62% Similarity=0.962 Sum_probs=449.5
Q ss_pred CCCCCCCCCCCCCccC---CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHH
Q 004808 110 TKSFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 110 ~~~~~~~~~~~~~~~~---~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
...||++.++...... +|.+|+|+++|+++|..+||..|||||..+||.+|.|+|+|.||.||||||.+|+||+|++
T Consensus 163 ~~~Ffa~~dg~s~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLER 242 (691)
T KOG0338|consen 163 KKFFFATEDGVSADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILER 242 (691)
T ss_pred ccccccccchhhhhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHH
Confidence 4567888887766554 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCc
Q 004808 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266 (729)
Q Consensus 187 l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~ 266 (729)
|+++|.+.+.++||||||||+|+.||+.+.+++++|+++.|++++||.+...|+..|+..|||||+|||||++||+++.+
T Consensus 243 LlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 243 LLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred HhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEE
Q 004808 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346 (729)
Q Consensus 267 ~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~ 346 (729)
|+|++|+++|+||||+||+.||...+.+|++.||+.+|+|||||||+..+.+++.+.+++|+.+.+++....+..++|.|
T Consensus 323 f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEF 402 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEF 402 (691)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEE
Q 004808 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (729)
Q Consensus 347 ~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 426 (729)
+++++..+..+..++..++...+..++|||+.|+..|++|..+|+.+|++++.|||.++|.+|.+.++.|++++++||||
T Consensus 403 iRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 403 IRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred heeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH---hccccchhhhhhhhH
Q 004808 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR---AGSKLKSRIVAEQSI 503 (729)
Q Consensus 427 Td~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~---~~~~~~~~~~~~~~~ 503 (729)
||+++|||||++|.+||||.+|.+...|+||+|||+|+|+.|.+++|+.+.|+++++.|.+. .+.+++.+.++++.+
T Consensus 483 TDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 483 TDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred echhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHHH
Q 004808 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570 (729)
Q Consensus 504 ~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 570 (729)
..|...|++|++.+..++.++++++.+.++++.+.+++||++|.+++..+|.|+||+++.++++.++
T Consensus 563 ek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g~ei~arprRtWFqte~~kk~~K~ 629 (691)
T KOG0338|consen 563 EKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHGDEIYARPRRTWFQTEKDKKASKR 629 (691)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccccCccchhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888753
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-76 Score=597.17 Aligned_cols=374 Identities=41% Similarity=0.668 Sum_probs=357.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+|++.+.|+++|...||..||+||.++||.++.|+|||+.|.||||||.+|+||++++|+..+. .+.+|||+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~---~~~~lVLt 136 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK---LFFALVLT 136 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC---CceEEEec
Confidence 557999999999999999999999999999999999999999999999999999999999999998765 36899999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||||||.|+.+++..|+...++++++++||.+...+...+...|+|||||||+|.+|+.+...|.+..++++|+||||++
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
+++.|...+..|+..+|..+|+++|||||+..+..+....+.+|+.+.+...+...+.+.|.|.+++. ..+..+|..
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~---k~K~~yLV~ 293 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG---KDKDTYLVY 293 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc---cccchhHHH
Confidence 99999999999999999999999999999999999999999999999998888888999999998875 466788899
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 443 (729)
++....+..+||||++...+.+++-+|...|+.+..|||.|++..|..+++.|++|..+||||||+++||||||.|++||
T Consensus 294 ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV 373 (476)
T KOG0330|consen 294 LLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV 373 (476)
T ss_pred HHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhhhhH
Q 004808 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~ 503 (729)
|||+|.+..+||||+||+||+|++|.+|+|++.+|...+..|+..++.++....++.+.+
T Consensus 374 NyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~ 433 (476)
T KOG0330|consen 374 NYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEV 433 (476)
T ss_pred ecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHH
Confidence 999999999999999999999999999999999999999999999998887666665544
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-68 Score=580.66 Aligned_cols=361 Identities=39% Similarity=0.575 Sum_probs=327.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcC-C--CCCCCcEEEE
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR-P--KRIPAIRVLI 201 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~-~--~~~~~~~vLI 201 (729)
..|+.++|++.+..++...||+.|||||.+.||.++.|+|+++.|.||||||++|+||++.++... . ....+|++||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 389999999999999999999999999999999999999999999999999999999999999862 1 2345789999
Q ss_pred EcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc
Q 004808 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (729)
|+||||||.|+...+..++..+.+++.+++||.+...|...+..+.+|+|+|||||+++|... .+.|+.+.++||||||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDEAD 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-CccccceeEEEeccHH
Confidence 999999999999999999998899999999999999999999999999999999999999986 7899999999999999
Q ss_pred hhhcCChHHHHHHHHHhc-CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCC--CCCCCceeEEEEeehhhhhhHH
Q 004808 282 RLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA--KRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 282 ~ll~~gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~--~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
+|+++||...+..|+..+ ++.+|++++|||+|..+..++..++.+|+.+.+.... .....+.|.+..+... .+.
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~---~K~ 326 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET---AKL 326 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH---HHH
Confidence 999999999999999999 5666999999999999999999999999888876442 3344566666555533 344
Q ss_pred HHHHHHhh---ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 004808 359 AVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (729)
Q Consensus 359 ~~l~~l~~---~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlD 435 (729)
..|..++. ....+++||||.|+..|+.|...|...++++..|||+.+|.+|..+++.|++|++.||||||+|+||||
T Consensus 327 ~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 327 RKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 44444443 345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 436 i~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
||+|++|||||+|.+++.|+||+|||||+|+.|.+++|++..+......+.+.+
T Consensus 407 i~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 407 VPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred CccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888777776654
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-67 Score=595.21 Aligned_cols=366 Identities=43% Similarity=0.664 Sum_probs=339.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
..|.+|+|++.++++|..+||..|||||..+||.++.|+|+++.|+||||||++|+||+|+++.........+ +|||+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECC
Confidence 6799999999999999999999999999999999999999999999999999999999999976421111112 999999
Q ss_pred cHHHHHHHHHHHHHHhhcc-CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|||||.|+++.+..++.+. ++++.+++||.+...+...+..++||||+|||||++|+... .+.++.++++|+||||+|
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhh
Confidence 9999999999999999998 79999999999999999889889999999999999999987 789999999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCC--CCCCceeEEEEeehhhhhhHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVNQEAVL 361 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~k~~~l 361 (729)
+++||.+.+..|+..+|..+|+++||||++..+..+.+.++.+|..+.+..... ....+.|.++.+.... .+...|
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L 264 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELL 264 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHH
Confidence 999999999999999999999999999999999999999999998888875444 6778999988886432 578888
Q ss_pred HHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccE
Q 004808 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (729)
Q Consensus 362 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 441 (729)
..++.......+||||+|+..+..|...|...|+++..|||+|+|.+|.++++.|++|+.+||||||+++||||||+|++
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhhHHHHhcccccCCCccEEEEEeccC-cHHHHHHHHHHhccccc
Q 004808 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 442 VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~ 494 (729)
|||||+|.+++.|+||+|||||+|+.|.+++|+++. +...+..|++..+..+.
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999986 89999999988765543
No 5
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-67 Score=530.34 Aligned_cols=375 Identities=41% Similarity=0.609 Sum_probs=341.7
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
....|+.|||++++.+.|..+|+..|||+|+.|||.+|.|+|+|.||.||||||++|.+|+|++|-..+. +.-+||+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~---giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY---GIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC---cceEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999977654 4469999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc---CccCCCCeeEEEEeC
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDE 279 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~---~~~~l~~i~~lVvDE 279 (729)
+|||+||.|+.+.|..+.+..++++++++||.+.-.+...|..+|||||+|||+|.+|+..+ ..+.+..++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999876 345689999999999
Q ss_pred cchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCC--CeEEecCCCCCCCCCceeEEEEeehhhhhhH
Q 004808 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (729)
Q Consensus 280 ah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~--p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k 357 (729)
||+|++..|...+..+...+|..+|+++||||++..+..+....... +..+...+....+..+.+.++.++. ..+
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~---~vk 238 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI---DVK 238 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch---hhh
Confidence 99999999999999999999999999999999999999887666665 4445556666777888888888764 355
Q ss_pred HHHHHHHhhc---cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 004808 358 EAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (729)
Q Consensus 358 ~~~l~~l~~~---~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGl 434 (729)
..++..++.. ...+.++||+++...|+.|+..|...++.+..+||.|+|.+|..++.+|+.+..+||||||+++|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 6666666642 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhhhhH
Q 004808 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503 (729)
Q Consensus 435 Di~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~ 503 (729)
|||.|++|||||+|.+|..|+||+||++|+|+.|.++.|+++.|...+.+|++..|.++.........+
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~ 387 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTV 387 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999988765544433
No 6
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-65 Score=530.87 Aligned_cols=360 Identities=39% Similarity=0.630 Sum_probs=326.3
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCc--EEEE
Q 004808 126 SFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI--RVLI 201 (729)
Q Consensus 126 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~--~vLI 201 (729)
+|++++ |+++|+.++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.++.+....++. .+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 466665 559999999999999999999999999999999999999999999999999999998776655544 7999
Q ss_pred EcCcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhc-cCccCCCCeeEEEEe
Q 004808 202 LTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLILD 278 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~-~~~~~l~~i~~lVvD 278 (729)
|+||||||.|+.+++..|..+ +++.+.+++||.+.......+. .++.|+|+|||||.+++.+ ...+++.++++||+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999999887 8899999999988777666554 5789999999999999987 344567799999999
Q ss_pred CcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCC--CCCCceeEEEEeehhhhhh
Q 004808 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~ 356 (729)
|||+++++||...+..|+..+|+.+.|-|||||.+.++.++....+.+|+.+.+..... .|..+..++..+.+ ..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---~e 241 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---DE 241 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH---HH
Confidence 99999999999999999999999999999999999999999999999999998877665 77778888877764 46
Q ss_pred HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 004808 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (729)
Q Consensus 357 k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGl 434 (729)
+...+..++......++|||++|...++.....|... ...+..+||.|++..|..++..|++....+|+|||+++|||
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 6777888888888899999999999999998888755 67899999999999999999999998889999999999999
Q ss_pred CCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 435 Di~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
|||+|++||+||+|.++..|+||+|||||+|+.|.+++|+.+.+..++..+.-+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999888887776544
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.5e-66 Score=542.20 Aligned_cols=384 Identities=33% Similarity=0.508 Sum_probs=341.6
Q ss_pred CccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-CCCCcEEE
Q 004808 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVL 200 (729)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-~~~~~~vL 200 (729)
.....|.++.|++..++++..+||..+|++|+..||.++.|+|+++.|.||||||+||+||+++.++.... ..++..+|
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 34566888999999999999999999999999999999999999999999999999999999999986442 23677899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcc-CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 201 ILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 201 Il~PtreLa~Q~~~~~~~l~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
||||||+||.|++.+++.+..+. ++.+.++.||.........+..++.|+|+|||||++||.+...+....+.++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999999987 99999999999998888888889999999999999999999888888999999999
Q ss_pred cchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCC-CeEEecCCCCC--CCCCceeEEEEeehhhhhh
Q 004808 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAK--RPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 280 ah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~-p~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~ 356 (729)
||+++++||...+..|+..+|+.+|+++||||+++.+.+++...+.. |+.+.++.... +...+.|-++..+.. .
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~---~ 315 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD---S 315 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc---c
Confidence 99999999999999999999999999999999999999999988876 77777665543 345677766665532 3
Q ss_pred HHHHHHHHhhccCC-CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 004808 357 QEAVLLSLCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (729)
Q Consensus 357 k~~~l~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlD 435 (729)
....+..++..... .++||||+|...+..++.+|+...++|..|||.++|..|..+...|++.+..||||||+++||+|
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 35566666666655 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhhhhHHHHHHHHH
Q 004808 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIE 511 (729)
Q Consensus 436 i~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 511 (729)
+|+|++||+||+|.++.+||||+|||||.|+.|.+++|+.+++..+++++. ...+....+++..........+
T Consensus 396 ~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~ 468 (543)
T KOG0342|consen 396 IPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLE 468 (543)
T ss_pred CCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 3445555555554444444333
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-66 Score=545.26 Aligned_cols=430 Identities=33% Similarity=0.523 Sum_probs=370.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC-CCCcEEEEE
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLIL 202 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~vLIl 202 (729)
...|.+|+|+...+++|...+|..||.||+.+||.+|.|+|||..|.||||||+||++|+|++|+...-. ..+.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999999865432 345679999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
.|||+||.|+++++.+.+.++++.+++++||......... -+..+|+|||||||+.||.....+..+++.+|||||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER-ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh-hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 9999999999999999999999999999999886554443 356799999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecC--CCCCCCCCceeEEEEeehhhhhhHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD--PSAKRPSTLTEEVVRIRRMREVNQEAV 360 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~k~~~ 360 (729)
|++|||...+..|+..+|+.+|++|||||.+..+.+++++.+.+|..+.+. .....|.++.|.|+.++. ..+..+
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l---~~Ki~~ 303 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL---EDKIDM 303 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh---hhHHHH
Confidence 999999999999999999999999999999999999999999999888775 335678899999988864 477889
Q ss_pred HHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC
Q 004808 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (729)
Q Consensus 361 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~ 438 (729)
|..++..+...++|||+.|+..+..++..|... |+++..|||.|+|..|..++..|...+.-||+|||+++||||+|.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCc-HHHHHHHHHHhccccchhhhhhhhHHHHHHHHHHHHHHH
Q 004808 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517 (729)
Q Consensus 439 v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 517 (729)
|++||+||+|.++.+||||+||++|.+..|.+++++++.+ ..++..|++. ++.+....+++..+ .++...+
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~~~k~-------~~i~~~l 455 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKIDPEKL-------TSIRNKL 455 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccCHHHh-------hhHHHHH
Confidence 9999999999999999999999999999999999999998 6677777765 35555555554433 3344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHHHHhH
Q 004808 518 AAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573 (729)
Q Consensus 518 ~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 573 (729)
..++....+-+... ...++++.+.|+-...+..|+-....-.++.++.
T Consensus 456 ~~ll~~~~eLk~~a--------qka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~ 503 (758)
T KOG0343|consen 456 EALLAKDPELKEYA--------QKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSL 503 (758)
T ss_pred HHHHhhCHHHHHHH--------HHHHHHHHHHHHhhccchhhcchhccHHHHHHhc
Confidence 55554433322221 2356777777776666777776665555555543
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-65 Score=498.71 Aligned_cols=369 Identities=32% Similarity=0.526 Sum_probs=345.4
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
...+|++++|+..+++++.+.||..|+.||+.+||.++.|+|||+.|..|+|||.+|.+.+|+.+.... ...++|||
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~---r~tQ~lil 101 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV---RETQALIL 101 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---ceeeEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999998765432 34689999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
.|||+||.|+.+++..++.+.++.+-.+.||.+.......+..+.++|.+|||++++.+... .+.-..+.+||+||||.
T Consensus 102 sPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 102 SPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLDEADE 180 (400)
T ss_pred cChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeEEEeccHHH
Confidence 99999999999999999999999999999999988888888899999999999999999875 67788999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
|++.||...+..+++.+|+..|++++|||+|.++.+....++.+|+.+-+.........+.++++.+.. +..+...|+
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~--EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEK--EEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeech--hhhhHhHHH
Confidence 999999999999999999999999999999999999999999999999998888777889999988764 455778888
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.+.....-...+|||+|+..+++|.+.+...++.+..+||+|++.+|..++..|+.|+.+|||+||+.+||+|+|.|++|
T Consensus 259 dLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslv 338 (400)
T KOG0328|consen 259 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLV 338 (400)
T ss_pred HHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEE
Confidence 88887777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhh
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (729)
||||+|.+.+.|+||+||.||.|+.|.++.|+...|...++.|++.+...+....
T Consensus 339 iNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 339 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred EecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999999999876665443
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.3e-64 Score=528.50 Aligned_cols=366 Identities=37% Similarity=0.573 Sum_probs=338.6
Q ss_pred CCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC------C
Q 004808 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------R 193 (729)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~------~ 193 (729)
.+.+..+|++.+|+..+++.+...||..|||||..+||..++++|+|+.|.||||||++|++|+|..+...++ .
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 3567789999999999999999999999999999999999999999999999999999999999988876652 3
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCee
Q 004808 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (729)
Q Consensus 194 ~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~ 273 (729)
..+|.++|++|||+|+.|+.+.-.+|++..+++++.++||.+...+.-.+..+++|+|+|||+|++.|.+. .+-++...
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qct 398 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCT 398 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCc
Confidence 45889999999999999999999999999999999999999999998889999999999999999999885 67789999
Q ss_pred EEEEeCcchhhcCChHHHHHHHHHhcCc-------------------------CceEEEEecccchhHHHHHHHhcCCCe
Q 004808 274 VLILDEADRLLELGFSAEIHELVRLCPK-------------------------RRQTMLFSATLTEDVDELIKLSLTKPL 328 (729)
Q Consensus 274 ~lVvDEah~ll~~gf~~~i~~il~~~~~-------------------------~~q~il~SATl~~~v~~l~~~~l~~p~ 328 (729)
+||+||||+|+++||.+.+..++..+|. .+|+++|||||++.+..+++.++..|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999988872 279999999999999999999999999
Q ss_pred EEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHH
Q 004808 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408 (729)
Q Consensus 329 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 408 (729)
.+.+.......+-+.|.++.+.. ..+...|..++...+..++|||+|+++.|+.|++.|...|+.+..|||+-+|.+
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~e---d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSE---DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred EEEeccCCCCccchheEEEEecc---hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 99998888777778888777653 344667888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 409 R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
|..++..|+.|..+||||||+++||||||+|.+|||||++.+...|+||||||||+|+.|.+++|+++.|...+..|.+.
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQA 635 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997766665554
Q ss_pred h
Q 004808 489 A 489 (729)
Q Consensus 489 ~ 489 (729)
+
T Consensus 636 l 636 (673)
T KOG0333|consen 636 L 636 (673)
T ss_pred H
Confidence 3
No 11
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-63 Score=524.35 Aligned_cols=370 Identities=39% Similarity=0.590 Sum_probs=317.9
Q ss_pred CCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCC------
Q 004808 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK------ 192 (729)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~------ 192 (729)
.....+.|..|+|+..++++|..+||..||+||..+||.+..| .|||+.|.||||||+||.||+++.++....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456778999999999999999999999999999999999999 799999999999999999999997664332
Q ss_pred ----CCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCc--
Q 004808 193 ----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-- 266 (729)
Q Consensus 193 ----~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~-- 266 (729)
....+-.|||+|||+||.|+.+-+..++.++++++..++||.....|.+.|+..|+|||||||||+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 12333499999999999999999999999999999999999999999999999999999999999999986533
Q ss_pred cCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC-----cCceEEEEecccchh---------------------HHHHH
Q 004808 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTED---------------------VDELI 320 (729)
Q Consensus 267 ~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~-----~~~q~il~SATl~~~---------------------v~~l~ 320 (729)
-++..+.+|||||||+|+..||..++..|++.+. ..+|+++||||++-. +..++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 3588999999999999999999999999888775 468999999998722 22222
Q ss_pred HH--hcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCcee
Q 004808 321 KL--SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398 (729)
Q Consensus 321 ~~--~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~ 398 (729)
.. +..+|..+...+.......+....+.++. ..+..+|..+ -..+++++|||||+...+.+|.-+|+..++...
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~---~eKD~ylyYf-l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPP---LEKDLYLYYF-LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCc---cccceeEEEE-EeecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 21 23455666666665555556555555532 2333334433 345689999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCc
Q 004808 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (729)
Q Consensus 399 ~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d 478 (729)
.||+.|.|.+|...+++|++....||||||+|+||||||+|.|||||.+|.+.+.|+||.|||+|++..|..++|+.|.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 004808 479 RSLLKAIAKRAGSKL 493 (729)
Q Consensus 479 ~~~l~~i~~~~~~~~ 493 (729)
...++.|.+.+....
T Consensus 572 ~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKE 586 (731)
T ss_pred hHHHHHHHHHHhhcc
Confidence 999999988775443
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.2e-62 Score=542.33 Aligned_cols=368 Identities=37% Similarity=0.572 Sum_probs=329.7
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC----CCCCcE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIR 198 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~----~~~~~~ 198 (729)
...+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.++.... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 4568999999999999999999999999999999999999999999999999999999999999875432 134678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
+|||+|||+||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++... .+.+..+.+||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEe
Confidence 999999999999999999999999999999999999888888888888999999999999999764 6789999999999
Q ss_pred CcchhhcCChHHHHHHHHHhcCc--CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh
Q 004808 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (729)
|||+|++++|...+..++..+|. .+|+++||||++..+..++...+.+|..+.+.........+.+.+... ....
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~~ 241 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNEE 241 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHHH
Confidence 99999999999999999999884 577899999999999999988999998887765554444555544432 2234
Q ss_pred HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 357 k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
+...+..++......++||||+++..++.+...|...|+.+..+||+|++.+|..+++.|++|+++|||||++++|||||
T Consensus 242 k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 242 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 55667777766667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 437 ~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
|+|++|||||+|.++..|+||+||+||+|+.|.|++|+++.+...+..|++.++..+.
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999887766554
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.4e-60 Score=548.71 Aligned_cols=370 Identities=38% Similarity=0.626 Sum_probs=335.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+|+|++.++++|..+||..|||+|.++||.++.|+|+|+.||||||||++|++|+++.+... ...+++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---cCCCeEEEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999987543 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 204 PTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
||++||.|+++.+..+... .++.+..++||.+...+...+..+++|||+||++|++++... .+.++++.+|||||||+
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHH
Confidence 9999999999999998776 489999999999988888888889999999999999999874 67899999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
|++++|...+..++..+|..+|+++||||++..+..+...++.+|..+.+.........+.+.++.+.. ..+...|.
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~~~L~ 237 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALV 237 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999888776655555567777666543 24455666
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++.......+||||+|+..+..|+..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 66666666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhh
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~ 500 (729)
||||+|.++..|+||+|||||+|+.|.|++|+.+.+...++.|++.++..+....++.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999999999999999999999999999888876655544
No 14
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-61 Score=498.97 Aligned_cols=359 Identities=38% Similarity=0.588 Sum_probs=324.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC---CCCCcEEEE
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLI 201 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~---~~~~~~vLI 201 (729)
.+|++|+|++.|++++..+||..||-||..+||.+|.|+|+++.|.||||||++|+||+++.|+.... +-.++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999986543 346788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhccC--ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 202 LTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~~~~~--i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
|+||+|||.|++.++.+|..+++ +++.-+....+.......|...|+|||+||++|+.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999988864 6677777777777777888899999999999999999887557789999999999
Q ss_pred cchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCC-CCCCCceeEEEEeehhhhhhHH
Q 004808 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 280 ah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~-~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
||.++..||...+..+...+|+..|.++||||++.++..+..++|++|+.+...... ..+..+.|+.+.+. +.++.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs---e~DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS---EEDKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec---cchhH
Confidence 999999999999999999999999999999999999999999999999998775444 34567888887765 45666
Q ss_pred HHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc--------
Q 004808 359 AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-------- 429 (729)
Q Consensus 359 ~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-------- 429 (729)
.++..+++ ....+++|||+||.+.+.+|.-+|...|++.++|+|.||...|..++++|+.|-++||||||.
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 66666654 556789999999999999999999999999999999999999999999999999999999991
Q ss_pred ---------------------------cccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHH
Q 004808 430 ---------------------------AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (729)
Q Consensus 430 ---------------------------~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l 482 (729)
++||||+..|.+|||||+|.++..||||+|||||+|++|.+++|+.+.+..-.
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhh
Confidence 47999999999999999999999999999999999999999999999887644
Q ss_pred HHHH
Q 004808 483 KAIA 486 (729)
Q Consensus 483 ~~i~ 486 (729)
..|+
T Consensus 416 ~~le 419 (569)
T KOG0346|consen 416 ESLE 419 (569)
T ss_pred hHHH
Confidence 4333
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-63 Score=492.39 Aligned_cols=372 Identities=33% Similarity=0.527 Sum_probs=343.3
Q ss_pred CCCCCCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCC
Q 004808 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195 (729)
Q Consensus 116 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~ 195 (729)
..+......+.|+++.|.+.|+..+.+.||..|+|+|.++||.+|.|+|+++.|..|+|||.+|++|+|+.+.... .
T Consensus 76 t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~---~ 152 (459)
T KOG0326|consen 76 TEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK---N 152 (459)
T ss_pred ccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc---c
Confidence 3444455678899999999999999999999999999999999999999999999999999999999999985443 4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEE
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~l 275 (729)
..+++|++|||+||.|+.+.+..++++.++.+.+.+||.+.......+....+++|+||||+++++... -..++...++
T Consensus 153 ~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~l 231 (459)
T KOG0326|consen 153 VIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVIL 231 (459)
T ss_pred ceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEE
Confidence 567999999999999999999999999999999999999988877778889999999999999999875 5679999999
Q ss_pred EEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhh
Q 004808 276 ILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 355 (729)
Q Consensus 276 VvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (729)
|+||||.|++..|...+..++..+|+.+|+++||||.|-.+..+...++.+|..+..-..- .+..++|++..+. +.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV~---e~ 307 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFVE---ER 307 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeeec---hh
Confidence 9999999999999999999999999999999999999999999999999999988765443 4557778777664 34
Q ss_pred hHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 004808 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (729)
Q Consensus 356 ~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlD 435 (729)
.+...|..++.+..-...||||||...++.|+....+.|++|.++|+.|-|+.|.+++..|++|.++.|||||++.||||
T Consensus 308 qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGID 387 (459)
T KOG0326|consen 308 QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGID 387 (459)
T ss_pred hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccc
Confidence 66777888888887889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccch
Q 004808 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 436 i~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (729)
|+.|++|||||+|.++++|+||+||.||.|..|.+|.|++..|+..|..|+..+|..+..
T Consensus 388 iqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 388 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred cceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999988764
No 16
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-62 Score=513.14 Aligned_cols=372 Identities=36% Similarity=0.534 Sum_probs=324.0
Q ss_pred CCCCCCccCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC--
Q 004808 117 ADGASFHANSFMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-- 193 (729)
Q Consensus 117 ~~~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~-- 193 (729)
....++....|..|||++.+...|.. +++..||.+|+++||.+|.|+|++|.++||||||++|++|+++.|...+..
T Consensus 128 v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~ 207 (708)
T KOG0348|consen 128 VSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ 207 (708)
T ss_pred ccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc
Confidence 34456777889999999999999975 899999999999999999999999999999999999999999999876543
Q ss_pred -CCCcEEEEEcCcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 194 -IPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 194 -~~~~~vLIl~PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++-+|||+||||||.|+|+.+.+|... +.|--+++.||.........|+.++.|+|+|||||++||.+...+.++.
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 45788999999999999999999999875 4566678899998888888999999999999999999999999999999
Q ss_pred eeEEEEeCcchhhcCChHHHHHHHHHhc-------------CcCceEEEEecccchhHHHHHHHhcCCCeEEecCC----
Q 004808 272 LAVLILDEADRLLELGFSAEIHELVRLC-------------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP---- 334 (729)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~il~~~-------------~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~---- 334 (729)
+.+||+||||++++.||...|..|++.+ |...|.||+|||++..+..+....+.+|+.+..+.
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 9999999999999999999999998765 23579999999999999999999999999887221
Q ss_pred -------------C--------CCCCCCceeEEEEeehh-hhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh
Q 004808 335 -------------S--------AKRPSTLTEEVVRIRRM-REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (729)
Q Consensus 335 -------------~--------~~~~~~l~~~~~~~~~~-~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~ 392 (729)
. ...|..+.|.++.+++. +...-...|...++.....++|||+.+.+.++.-+.+|..
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 1 23455667777776642 2222234455556666677999999999999887777742
Q ss_pred ----------------------cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCC
Q 004808 393 ----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (729)
Q Consensus 393 ----------------------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s 450 (729)
.+..+..|||+|+|.+|..++..|......||+|||+++||||+|.|++||.||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2356889999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 451 ~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
+.+|+||+|||+|+|..|.+++|+.|.+..+++.+...
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999999998888765
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-60 Score=536.41 Aligned_cols=364 Identities=39% Similarity=0.628 Sum_probs=328.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC---CCCCcEEEEE
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLIL 202 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~---~~~~~~vLIl 202 (729)
+|++|+|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+..... ...++++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999865432 2234689999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+||++||.|+++.+..++.+.++++..++||.+...+...+...++|||+||++|++++... .+.++.+++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHH
Confidence 99999999999999999988899999999999988888888889999999999999988764 56799999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
|++++|...+..++..++..+|+++||||+++.+..+...++.+|..+.+.........+.+.+..+.. ..+...+.
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~ 237 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK---KRKRELLS 237 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999877765555455556666554432 23445566
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 66666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhcccc
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~ 493 (729)
|||++|.++..|+||+|||||+|..|.|++|++..|...++.|++.++..+
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999988776555
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2e-60 Score=542.64 Aligned_cols=366 Identities=35% Similarity=0.529 Sum_probs=322.6
Q ss_pred CCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--CCCCc
Q 004808 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAI 197 (729)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~--~~~~~ 197 (729)
.+.+..+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|+||++.++...+. ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 3556778999999999999999999999999999999999999999999999999999999999999875432 22467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEE
Q 004808 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (729)
Q Consensus 198 ~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVv 277 (729)
.+|||+|||+||.|+.+.+..++...++++.+++||.....+...+..+++|||+||++|++++... ...|..+.+|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEe
Confidence 8999999999999999999999988899999999999988888888899999999999999999875 567899999999
Q ss_pred eCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcC-CCeEEecCCCC-CCCCCceeEEEEeehhhhh
Q 004808 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT-KPLRLSADPSA-KRPSTLTEEVVRIRRMREV 355 (729)
Q Consensus 278 DEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~-~p~~i~~~~~~-~~~~~l~~~~~~~~~~~~~ 355 (729)
||||+|++++|...+..++..+++.+|+++||||++..+..+...++. .|+.+.+.... .....+.+.+..+.. .
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~---~ 360 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE---H 360 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec---h
Confidence 999999999999999999999999999999999999999998887775 56666554332 223445555554432 2
Q ss_pred hHHHHHHHHhhcc--CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 004808 356 NQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (729)
Q Consensus 356 ~k~~~l~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rG 433 (729)
.+...|..++... ...++||||+++..++.|...|...++.+..+||++++.+|..+++.|++|+..|||||++++||
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcC
Confidence 3444455555433 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 434 lDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
||||+|++|||||+|.++..|+||+|||||+|+.|.|++|+++.+...+..|.+.+
T Consensus 441 IDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 441 LDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877776654
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.4e-60 Score=535.67 Aligned_cols=364 Identities=37% Similarity=0.585 Sum_probs=330.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+|+|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|+++++.... ..+++|||+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~---~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR---FRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc---CCceEEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999985432 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 204 PTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
||++||.|+.+.+..++.. .++++..++||.+...+...+..+++|+|+||++|.+++... .+.+.++++|||||||+
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHH
Confidence 9999999999999998775 478999999999998888888899999999999999999874 57789999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
|++++|...+..++..+|..+|+++||||+++.+..+...++..|..+.+.... ....+.+.++.+... .+...+.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~---~k~~~l~ 234 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD---ERLPALQ 234 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999888776544 334567776665432 3666677
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++....+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|+|++|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 77777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccch
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (729)
||||+|.++..|+||+|||||+|+.|.|++|+++.+...+..|.+..+..+..
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999998887765543
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-60 Score=543.69 Aligned_cols=367 Identities=37% Similarity=0.579 Sum_probs=329.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC----CCCCcEEE
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVL 200 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~----~~~~~~vL 200 (729)
.+|.+|+|++.|+++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++++++.... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999875431 12357899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCc
Q 004808 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 201 Il~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (729)
||+||++||.|+++.+..|+...++++..++|+.....+...+..+++|||+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999889999999999999888888888889999999999999998755577899999999999
Q ss_pred chhhcCChHHHHHHHHHhcCc--CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH
Q 004808 281 DRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 281 h~ll~~gf~~~i~~il~~~~~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
|+|++++|...+..++..++. .+|+++||||++..+..+...++..|..+.+.........+.+.++... ...+.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---~~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA---DEEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC---HHHHH
Confidence 999999999999999999986 7899999999999999999999988877766544444445555554432 23455
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~ 438 (729)
..+..++....+.++||||+|+..++.|+.+|...++.+..|||+|++.+|..+++.|++|+.+|||||+++++|||||+
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 66777777667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 439 v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
|++|||||+|.++..|+||+||+||.|..|.|++|+++.+...+..|++.++..+.
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999998889999887766554
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.6e-59 Score=523.85 Aligned_cols=366 Identities=40% Similarity=0.627 Sum_probs=328.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC-CCCcEEEEEcC
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTP 204 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~vLIl~P 204 (729)
+|++|+|++.++++|..+||..||++|.++||.++.|+|++++||||+|||++|++|++++++..+.. ..++++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999998753321 23568999999
Q ss_pred cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
|++||.|+++.+..++.+.++++..++||.....+...+..+++|||+||++|++++... .+.+..+++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHh
Confidence 999999999999999999999999999999988888888888999999999999998774 6778999999999999999
Q ss_pred cCChHHHHHHHHHhcCcCceEEEEecccch-hHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 285 ~~gf~~~i~~il~~~~~~~q~il~SATl~~-~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
+++|...+..+...++...|+++||||++. .+..+....+..|+.+...........+.+.+..... ...+...+..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADD--LEHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCC--HHHHHHHHHH
Confidence 999999999999999999999999999985 5778888888888888776665555566666554432 2345667777
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 443 (729)
++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+|++||
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 77765678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
|||+|.++..|+||+|||||+|..|.|++|+...|...+..|.+.+...+.
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999888888776554443
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-60 Score=485.83 Aligned_cols=363 Identities=34% Similarity=0.550 Sum_probs=320.9
Q ss_pred CCccCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC---CCCC
Q 004808 121 SFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPA 196 (729)
Q Consensus 121 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~---~~~~ 196 (729)
|.+..+|++ ++-.+.++..+...||.+|||||.++||.+|+|.|+++.|.||+|||++|++|.+-|+...+. ..++
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 344566765 567799999999999999999999999999999999999999999999999999988876553 3467
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
+.+|+++|||+||.|+.-.+.++ .+.+....+++||.+...+...+..+.+|+|+||++|.++...+ .++|.++.+||
T Consensus 295 p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEE
Confidence 88999999999999998888876 45688888999999999999999999999999999999987765 78999999999
Q ss_pred EeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCC-CCceeEEEEeehhhhh
Q 004808 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREV 355 (729)
Q Consensus 277 vDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~-~~l~~~~~~~~~~~~~ 355 (729)
|||||+||++||...+..|+-.+.+.+|+++.|||+|+.+..+...++.+|+.+.+....... ..+.|.+ .+. .+.
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~--~d~ 449 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVT--TDS 449 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-Eec--ccH
Confidence 999999999999999999999999999999999999999999999999999888765443322 2344444 222 234
Q ss_pred hHHHHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 004808 356 NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (729)
Q Consensus 356 ~k~~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGl 434 (729)
.+...+..++. -....++||||..+..++.|..-|...|+..-.|||+-.|.+|..+++.|+.|.++||||||+++|||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 45555555554 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 435 Di~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
|+++|+||+|||+|.+++.|+||+||+||+|+.|.+++|++.+|..+...+.+-
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776553
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-58 Score=526.19 Aligned_cols=364 Identities=31% Similarity=0.503 Sum_probs=319.9
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCC----CCCCC
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP----KRIPA 196 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~----~~~~~ 196 (729)
+.+..+|.+++|++.++.+|...||..|||+|.++||.++.|+|+|++||||||||++|++|++.+++... ....+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999886421 12256
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
+++|||+|||+||.|+.+.+..+....++++..++||.....+...+..+++|||+||++|++++... .+.+.++.+||
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lV 275 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLV 275 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEE
Confidence 78999999999999999999999888888999999998888777778889999999999999999875 67899999999
Q ss_pred EeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh
Q 004808 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 277 vDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (729)
|||||+|+++||...+..++..++ .+|+++||||+++.+..+...++.+++.+.+.........+.+.+..+.. ..
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~---~~ 351 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET---KQ 351 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc---hh
Confidence 999999999999999999998885 57999999999999999999999888888776555444455565555442 23
Q ss_pred HHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 004808 357 QEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (729)
Q Consensus 357 k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rG 433 (729)
+...+..++.. ....++||||+++..++.|...|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++||
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 33445555443 2346899999999999999999974 68999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 434 lDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
||+|+|++|||||+|.++..|+||+|||||+|..|.+++|+++.+...+..+.+.+
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887777654
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-59 Score=501.54 Aligned_cols=364 Identities=37% Similarity=0.561 Sum_probs=327.2
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-------C
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-------R 193 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-------~ 193 (729)
+.+..+|.+-.+...+..++...||..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++.... .
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 444557787788999999999999999999999999999999999999999999999999999999986532 1
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCee
Q 004808 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (729)
Q Consensus 194 ~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~ 273 (729)
...|++|||+|||+||.|+++...+++...+++++.++||.+...+...+..++||+|||||+|.+.+... .+.|..+.
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k 228 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-KISLDNCK 228 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-eeehhhCc
Confidence 13589999999999999999999999988999999999999999999999999999999999999999886 78899999
Q ss_pred EEEEeCcchhhc-CChHHHHHHHHHhcCc----CceEEEEecccchhHHHHHHHhcCC-CeEEecCCCCCCCCCceeEEE
Q 004808 274 VLILDEADRLLE-LGFSAEIHELVRLCPK----RRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVV 347 (729)
Q Consensus 274 ~lVvDEah~ll~-~gf~~~i~~il~~~~~----~~q~il~SATl~~~v~~l~~~~l~~-p~~i~~~~~~~~~~~l~~~~~ 347 (729)
+|||||||+|++ ++|.+.|..|+..... .+|+++||||.+..+..++..++.+ .+.+.+.........+.|.+.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 999999999998 9999999999988764 7899999999999999999888886 777777777778889999998
Q ss_pred EeehhhhhhHHHHHHHHhhccC----C-----CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc
Q 004808 348 RIRRMREVNQEAVLLSLCSKTF----T-----SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (729)
Q Consensus 348 ~~~~~~~~~k~~~l~~l~~~~~----~-----~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 418 (729)
.+... .+...|+.++.... . ..++|||.+++.+..|..+|...++++..+||.-++.+|.+++..|++
T Consensus 309 ~V~~~---~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 309 FVNEM---EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eecch---hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 88654 33444555444222 2 379999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 419 g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
|...|||||++++||||||+|+||||||+|.+...|+||||||||+|..|.++.|++..+..+.+.+.+.
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~ 455 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEI 455 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998777777666554
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.1e-57 Score=510.10 Aligned_cols=370 Identities=36% Similarity=0.611 Sum_probs=327.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC----CCCcEE
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR----IPAIRV 199 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~----~~~~~v 199 (729)
...|.+++|++.|+.+|..+||..||++|.++|+.++.|+|+|+++|||||||++|++|+++.++..+.. ...+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4578899999999999999999999999999999999999999999999999999999999998765421 125789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 200 LIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
|||+||++||.|+++.+..+....++.+..++||.+...+...+. ..++|||+||++|++++... .+.++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCceEEec
Confidence 999999999999999999999888999999999988776666554 46899999999999988764 5678999999999
Q ss_pred CcchhhcCChHHHHHHHHHhcCc--CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh
Q 004808 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (729)
|||++++++|...+..++..++. .+|++++|||++.++..++..++.+|..+.+.........+.+.+..+.. ..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG---SD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc---hh
Confidence 99999999999999999998875 57999999999999999999999998887766555444555555554432 34
Q ss_pred HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 357 k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
+...+..++......++||||+++..++.+..+|...++.+..+||++++.+|..+++.|++|+++|||||+++++||||
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 55566677766667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhh
Q 004808 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (729)
Q Consensus 437 ~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (729)
|+|++||+|++|.++..|+||+||+||.|+.|.+++|+++.|..++..+++.++..+....
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~ 462 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEM 462 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccC
Confidence 9999999999999999999999999999999999999999999999999998887765433
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.1e-60 Score=477.96 Aligned_cols=359 Identities=37% Similarity=0.605 Sum_probs=319.5
Q ss_pred CCCCCCCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--
Q 004808 115 APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-- 192 (729)
Q Consensus 115 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-- 192 (729)
...+..+++..+|.++.++..+++.|...|+.+|||||.+.||.+|.|+|.|..|-||||||++|.||++-..+...-
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 345566778999999999999999999999999999999999999999999999999999999999999866654221
Q ss_pred ---CCCCcEEEEEcCcHHHHHHHHHHHHHHhh------ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhc
Q 004808 193 ---RIPAIRVLILTPTRELAVQVHSMIEKIAQ------FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN 263 (729)
Q Consensus 193 ---~~~~~~vLIl~PtreLa~Q~~~~~~~l~~------~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~ 263 (729)
...+|-.||+||+|+||.|.++.+..++. ++.++.+++.||.+...+...++.+.+|+|+|||||.+.|..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 23477899999999999999999988765 345889999999999999999999999999999999999987
Q ss_pred cCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCce
Q 004808 264 SMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343 (729)
Q Consensus 264 ~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~ 343 (729)
. .++|.-..++++||||+|+++||...+..|..++...+|+++||||||..+..+++..+.+|+.+.+.......-++.
T Consensus 320 K-~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldVi 398 (610)
T KOG0341|consen 320 K-IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVI 398 (610)
T ss_pred h-hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHH
Confidence 4 678888999999999999999999999999999999999999999999999999999999999999876665554554
Q ss_pred eEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceE
Q 004808 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423 (729)
Q Consensus 344 ~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 423 (729)
|.+-.+ ....+..+|+..+.+ ...+|||||-.+.+++.+..||-..|+.++.|||+-+|++|..+++.|+.|+.+|
T Consensus 399 QevEyV---kqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDV 474 (610)
T KOG0341|consen 399 QEVEYV---KQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDV 474 (610)
T ss_pred HHHHHH---HhhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCce
Confidence 443322 233444445544443 4569999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCc
Q 004808 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (729)
Q Consensus 424 LVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d 478 (729)
|||||+++.|||+|++.||||||+|...+.|+||+|||||.|+.|.+.+|++...
T Consensus 475 LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 475 LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred EEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999864
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-58 Score=478.07 Aligned_cols=365 Identities=36% Similarity=0.556 Sum_probs=333.7
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--CCCCcE
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIR 198 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~--~~~~~~ 198 (729)
+.+..+|.+++++..|..++...-|.+|||+|.+++|.++.|+||+..|.||||||.+|++|++-|++..+. ...+|-
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 346778999999999999999999999999999999999999999999999999999999999999986553 235788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
.|||||||+||.|++.++++|++..+++++++|||.+...|...|..++.|||||||||++++.-. ..++.++.+||||
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~LV~D 377 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYLVLD 377 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998764 6889999999999
Q ss_pred CcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH
Q 004808 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
|||+|.++||...+..|..++.+.+|+|+||||++..+..+++.+|..|+++...........++|.+..+... ..+.
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~--~~Kl 455 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE--EKKL 455 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--HHHH
Confidence 99999999999999999999999999999999999999999999999999998877777777888887766532 2333
Q ss_pred H-HHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC
Q 004808 359 A-VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (729)
Q Consensus 359 ~-~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~ 437 (729)
. ++..|..-...+++|||+.-+..++.+...|...++++..+||+|.|.+|.+++..|+.+...|||+||+++||+||+
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 3 334444555568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 438 ~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
.+.+|||||+-.++..|.||+||+||+|..|.+|+|+++.|..+.-.|.+.
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHH
Confidence 999999999999999999999999999999999999999997765555443
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.6e-55 Score=483.49 Aligned_cols=365 Identities=33% Similarity=0.531 Sum_probs=323.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+|+|++.+.++|..+||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+... ..++++|||+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999887432 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||++||.|+.+.+..++...++.+..++|+.........+..+++|+|+||++|.+++... .+.+.++++|||||||++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHH
Confidence 9999999999999999888888888899998877777777888999999999999988764 567899999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
++++|...+..++..++...|++++|||+++.+..+...++..|..+.+.........+.+.++.+.. ...+...+..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--EEWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--HHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888776654444344455555554432 1233445556
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 443 (729)
++......++||||+++..++.+...|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 66666667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+...+.
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~ 391 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIE 391 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCccc
Confidence 999999999999999999999999999999999999999999888765554
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-56 Score=462.77 Aligned_cols=363 Identities=35% Similarity=0.547 Sum_probs=312.4
Q ss_pred cCCcccCCCCHHH----------HHHHHHcCCCCCcHHHHHHHHHHhc---------CCCEEEEcCCCchhhHHhhhhhh
Q 004808 124 ANSFMELNLSRPL----------LRACEALGYSKPTPIQAACIPLALT---------GRDICGSAITGSGKTAAFALPTL 184 (729)
Q Consensus 124 ~~~f~~l~l~~~l----------~~~l~~~g~~~pt~iQ~~~i~~ll~---------g~dvlv~a~TGsGKT~a~~lpil 184 (729)
...|+.++++..+ ..++..+++++.+|+|..++|++|. ++|++|.||||||||++|.|||+
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3456667766543 4458899999999999999999964 58999999999999999999999
Q ss_pred HHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcC-C----CeEEECchHHHH
Q 004808 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-P----DIVVATPGRMID 259 (729)
Q Consensus 185 ~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~-~----dIvI~TP~~L~~ 259 (729)
+.|..++- ++.++|||+||++|+.|++..|..++...++.|+.+.|..+.......|.+. + ||+|+|||||++
T Consensus 206 Q~L~~R~v--~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 206 QLLSSRPV--KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHHccCCc--cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 99987764 5689999999999999999999999999999999999999988877777654 3 899999999999
Q ss_pred HHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC----------------------------------cCceE
Q 004808 260 HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP----------------------------------KRRQT 305 (729)
Q Consensus 260 ~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~----------------------------------~~~q~ 305 (729)
||.+..+|+|.+++++||||||+|++..|..++-.++..+. +..+.
T Consensus 284 Hl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~k 363 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWK 363 (620)
T ss_pred hccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHh
Confidence 99998999999999999999999999888887766654432 12357
Q ss_pred EEEecccchhHHHHHHHhcCCCeEEecC----CCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHH
Q 004808 306 MLFSATLTEDVDELIKLSLTKPLRLSAD----PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381 (729)
Q Consensus 306 il~SATl~~~v~~l~~~~l~~p~~i~~~----~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~ 381 (729)
++||||++.+-..+..+-++.|....+. .....|..+.+..+.... ..+...+..++......++|+|+++..
T Consensus 364 L~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~---~~kpl~~~~lI~~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP---KFKPLAVYALITSNKLNRTLCFVNSVS 440 (620)
T ss_pred hhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc---ccchHhHHHHHHHhhcceEEEEecchH
Confidence 8999999999888988889998555443 344566667766655432 245667777888888899999999999
Q ss_pred HHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHH
Q 004808 382 AAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457 (729)
Q Consensus 382 ~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQr 457 (729)
.+.++...|. ..++++..+.|.++...|...++.|..|.++||||+|+++||||+.+|+.|||||+|.+...|+||
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR 520 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHR 520 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHh
Confidence 9999998887 346788889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCccEEEEEeccCcHHHHHHHHHHhcc
Q 004808 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (729)
Q Consensus 458 iGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~ 491 (729)
+|||||+|+.|.||+++...+...+..+.+..+.
T Consensus 521 ~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 521 AGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999998888777776654
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-56 Score=451.46 Aligned_cols=373 Identities=31% Similarity=0.486 Sum_probs=331.8
Q ss_pred CCCCCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCC
Q 004808 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRI 194 (729)
Q Consensus 117 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~ 194 (729)
++...++..+|++|+|+|.|++++..|+|..|+.||..++|.+|.. +++|..+..|+|||.||.|.+|.++... .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---~ 158 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---V 158 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---c
Confidence 4445677899999999999999999999999999999999999996 7999999999999999999999887433 4
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeE
Q 004808 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (729)
Q Consensus 195 ~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~ 274 (729)
..|++++|+|||+||.|+.+++.+.++|.++...+.+.+..... .-.-..+|+|+|||.+++++..-..+.+..+.+
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~id~~kikv 235 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKV 235 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhhChhhceE
Confidence 56789999999999999999999999999998888877752110 011125899999999999998866788999999
Q ss_pred EEEeCcchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh
Q 004808 275 LILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (729)
Q Consensus 275 lVvDEah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~ 353 (729)
+|+||||.|++ .||.+.-..|...+|+..|+|+||||....+..++...+.++..+.+.........+.|.++.+..
T Consensus 236 fVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~-- 313 (477)
T KOG0332|consen 236 FVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC-- 313 (477)
T ss_pred EEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc--
Confidence 99999999995 689999999999999999999999999999999999999999888887777777888888887763
Q ss_pred hhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 004808 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (729)
Q Consensus 354 ~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rG 433 (729)
...++..|..+.....-+..||||.|+..+.+|+..|...|..+..+||+|...+|..++..|+.|..+|||+|++++||
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 45778888887766667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCC------ChhhHHHHhcccccCCCccEEEEEeccC-cHHHHHHHHHHhccccchhh
Q 004808 434 LDIIGVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSRI 497 (729)
Q Consensus 434 lDi~~v~~VI~~d~P~------s~~~yiQriGRagR~G~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~~~~ 497 (729)
||++.|+.|||||+|. +++.|+||+|||||.|+.|.++.|+... ...++..|++.++..+..+.
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 9999999999999996 7899999999999999999999998865 57788899999877766543
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-56 Score=456.48 Aligned_cols=365 Identities=39% Similarity=0.588 Sum_probs=338.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.++||+..+++++...||..|||||+..||.+|.|+|++..+.||||||.+|++|++++|.... ..+.++||+.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999998776 3677899999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|||+|+.|+..+++.+++++++++.+++||.+...+...+..++|||+||||+++...... .+.|+++++||+||||+|
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999998765553 688999999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
..+||.+.+.+++..+|..+|+++||||+|..+.++.+..+..|+.+..+........+...+..++. ..+..+|+.
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~---a~K~aaLl~ 253 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK---AEKEAALLS 253 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877777666667666666553 467777887
Q ss_pred HhhccC-CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 364 LCSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 364 l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
++.... ...++|||+|...++.+...|...|+.+..++|.|++.-|...+..|+.++..+||.|++++||+|||..+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 776543 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
||||.|.+...|+||+||++|+|+.|++|.|+.+.+..++-.|...++..+.
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 9999999999999999999999999999999999999999999888876554
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-55 Score=446.18 Aligned_cols=363 Identities=32% Similarity=0.539 Sum_probs=334.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|++++|++.|++.+...||.+|+.||+.+|+++..|.|+++.+++|+|||.+|++++++++.... ....+||++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~---ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV---KETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch---HHHHHHHhc
Confidence 34899999999999999999999999999999999999999999999999999999999999874332 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
|||+||.|+..+...+....+..+..++||.....+...+. ..++|+++|||++.+.+... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 99999999999999999999999999999988775555444 45899999999999999876 77788999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
|+..||.+.+..+.+.+|...|++++|||++.++..+.+.++.+|+.+.+.....+...+.|+++.+.... +...|+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~l~ 257 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KLDTLC 257 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cccHHH
Confidence 99999999999999999999999999999999999999999999999998877777788899998886543 666677
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++. .-...+|||||+..+..+..+|...++.+..+||.|.+.+|..++..|+.|..+|||.|++++||+|+..+..|
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 7766 45688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccch
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (729)
|||++|.+.+.|+||+||+||.|++|.++.++...|...++.+++.++..+..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e 388 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEE 388 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCccee
Confidence 99999999999999999999999999999999999999999999988776654
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-54 Score=489.39 Aligned_cols=377 Identities=37% Similarity=0.537 Sum_probs=334.7
Q ss_pred CCCCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--CCCC
Q 004808 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPA 196 (729)
Q Consensus 119 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~--~~~~ 196 (729)
+.+.+..+|.+.|++..++..++.+||..|||||.++||+++.|+|||+.|.||||||++|+||++.|+.-.+. ...+
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdG 438 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDG 438 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999988765442 2348
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc--CccCCCCeeE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAV 274 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~--~~~~l~~i~~ 274 (729)
|.+||++|||+||.|+++++..|+...++++++++||.....+...++.++.|+|||||++++.+-.+ .-.+|..+.+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~ 518 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTY 518 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999998643 2234666679
Q ss_pred EEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhh
Q 004808 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE 354 (729)
Q Consensus 275 lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~ 354 (729)
||+||||+|+++||.+.+..|++.+++.+|+++||||++..+..+....++.|+.+.+.........+.+.+..+.. +
T Consensus 519 lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~--e 596 (997)
T KOG0334|consen 519 LVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI--E 596 (997)
T ss_pred eeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC--c
Confidence 99999999999999999999999999999999999999999999999999999998887666666667766655442 3
Q ss_pred hhHHHHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 004808 355 VNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (729)
Q Consensus 355 ~~k~~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rG 433 (729)
..+...|..++. ....+++||||.....|..|..-|...|+.|..|||+.++.+|..+++.|++|.+.+||||++++||
T Consensus 597 ~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarG 676 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARG 676 (997)
T ss_pred hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcc
Confidence 345555555554 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhh
Q 004808 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (729)
Q Consensus 434 lDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (729)
||++.+.+|||||+|.....|+||+|||||+|+.|.|++|+.+.+..+.-.|.+.+ .+....+|
T Consensus 677 Ldv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334|consen 677 LDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred cccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH--HhccCCCc
Confidence 99999999999999999999999999999999999999999998877777777766 34444444
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.2e-52 Score=445.62 Aligned_cols=358 Identities=29% Similarity=0.467 Sum_probs=322.3
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
-...|++|.|.+.++..|...+|..||+||..+||.++.+-|+||.|..|+|||++|.+.+++.+..+ ...++++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---~~~~q~~Iv 99 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---SSHIQKVIV 99 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---cCcceeEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999988655 345689999
Q ss_pred cCcHHHHHHHHHHHHHHhh-ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc
Q 004808 203 TPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~-~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (729)
+|||++|.|+.+.+..++. +.|++|.+++||.........++ .++|+|+|||||..++... .++.++++++||||||
T Consensus 100 ~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 100 TPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDEAD 177 (980)
T ss_pred ecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhc-CCCccceeEEEeccHH
Confidence 9999999999999999986 58999999999988766555554 4689999999999988875 7899999999999999
Q ss_pred hhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhh-----h
Q 004808 282 RLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE-----V 355 (729)
Q Consensus 282 ~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~-----~ 355 (729)
.|++ ..|...+..|++.+|..+|++.||||.+..+.+++..+|.+|..+.........-++.|+++.+..... .
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHH
Confidence 9997 569999999999999999999999999999999999999999999988777777788888877654321 2
Q ss_pred hHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 004808 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (729)
Q Consensus 356 ~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlD 435 (729)
.+...|..++...+-...||||+....|+-++++|...|+.|..|.|.|+|.+|..+++.++.-.++|||+||+.+||||
T Consensus 258 lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284|consen 258 LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred HHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCC
Confidence 34566777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcH-HHHHHH
Q 004808 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR-SLLKAI 485 (729)
Q Consensus 436 i~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~-~~l~~i 485 (729)
-+.|++|||.|+|.+..+|.||||||||.|..|.+++|+..... ..+..+
T Consensus 338 a~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 338 ADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999987543 444444
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.1e-50 Score=467.60 Aligned_cols=358 Identities=19% Similarity=0.234 Sum_probs=281.0
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
.|++.|.++|..+||..||++|.++||.++.|+|+|+++|||||||++|++|+|+.+... +++++|||+|||+||.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 3468999999999999
Q ss_pred HHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc-C--ccCCCCeeEEEEeCcchhhcCC
Q 004808 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-M--SVDLDDLAVLILDEADRLLELG 287 (729)
Q Consensus 211 Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~-~--~~~l~~i~~lVvDEah~ll~~g 287 (729)
|+...+..+. ..++++..+.|+... .+...+...++|||+||++|...+... . ...++++++|||||||.|...
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~- 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV- 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-
Confidence 9999999987 457888887777664 444566778999999999987543221 0 123789999999999999763
Q ss_pred hHHHHHHHH-------HhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeeh---------
Q 004808 288 FSAEIHELV-------RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--------- 351 (729)
Q Consensus 288 f~~~i~~il-------~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~--------- 351 (729)
|...+..++ ...+..+|++++|||+++... ++..++..|+.+. .... .+....+.....+.
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccccc
Confidence 555544433 334567899999999998754 5666666675442 2221 12221222111111
Q ss_pred -----hhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc--------CCceeeccCCCCHHHHHHHHHHHhc
Q 004808 352 -----MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRK 418 (729)
Q Consensus 352 -----~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~l~~F~~ 418 (729)
.........+..++.. +.++||||+|+..++.+..+|... +..+..+||++++.+|..+++.|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0112233445555443 579999999999999999887653 5678899999999999999999999
Q ss_pred CCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEec--cCcHHHHHHHHHHhccccchh
Q 004808 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT--DNDRSLLKAIAKRAGSKLKSR 496 (729)
Q Consensus 419 g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~--~~d~~~l~~i~~~~~~~~~~~ 496 (729)
|++++||||+++++||||+++++||||++|.+...|+||+|||||.|+.|.+++++. +.|..++..+...++..+...
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999999999999987 456667777777776666554
Q ss_pred hhhh
Q 004808 497 IVAE 500 (729)
Q Consensus 497 ~~~~ 500 (729)
.++.
T Consensus 408 ~~~~ 411 (742)
T TIGR03817 408 VFDP 411 (742)
T ss_pred eeCC
Confidence 4443
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-50 Score=433.62 Aligned_cols=367 Identities=35% Similarity=0.488 Sum_probs=317.7
Q ss_pred CCccCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCC--CCC
Q 004808 121 SFHANSFME----LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRI 194 (729)
Q Consensus 121 ~~~~~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~--~~~ 194 (729)
+....+|.+ +...+.|+..+...+|..|+|+|.++||.++.++|++.|||||||||++|++|++++|.... +..
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 344555655 56789999999999999999999999999999999999999999999999999999987544 234
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHh--hccCceEEEEecCCChHHHH-HHHhcCCCeEEECchHHHHHHhcc-CccCCC
Q 004808 195 PAIRVLILTPTRELAVQVHSMIEKIA--QFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNS-MSVDLD 270 (729)
Q Consensus 195 ~~~~vLIl~PtreLa~Q~~~~~~~l~--~~~~i~v~~~~gg~~~~~~~-~~l~~~~dIvI~TP~~L~~~l~~~-~~~~l~ 270 (729)
.+.+++||.|||+||.|++..+..+. ...++++..+.......... ......++|+|.||-+|+.++... ..+.++
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57789999999999999999999998 55566655554443322221 122344799999999999999764 236799
Q ss_pred CeeEEEEeCcchhhcC-ChHHHHHHHHHhcC-cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEE
Q 004808 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~il~~~~-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~ 348 (729)
.+.++|+||||++.+. +|...+..|+..|. +...+-+||||++.++.+++......++.+.+.........+.|..+.
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 9999999999999988 89999888888774 566788999999999999999999999888887666666677777777
Q ss_pred eehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHH-hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc
Q 004808 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (729)
Q Consensus 349 ~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT 427 (729)
+.. ...+...+..++......++|||+.+++.+..|...| ...++++..+||..++.+|.++++.|+.|++.|||||
T Consensus 368 ~gs--e~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 368 CGS--EKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eec--chhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 653 4567778888888889999999999999999999999 6779999999999999999999999999999999999
Q ss_pred CccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 428 d~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
++++||||+.||++|||||+|.+...|+||+||+||+|+.|.+|+||++.|...++.|.+..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888654
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.3e-48 Score=448.44 Aligned_cols=344 Identities=21% Similarity=0.255 Sum_probs=265.7
Q ss_pred Cccc--CCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 126 SFME--LNLSRPLLRACE-ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 126 ~f~~--l~l~~~l~~~l~-~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
.|.. ++....+...+. .+||..|+|+|.++|+.++.|+|+|+++|||+|||++|+||+|.. ++.+|||
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVI 506 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVI 506 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEE
Confidence 4553 455566655554 479999999999999999999999999999999999999999853 2359999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh------cCCCeEEECchHHHH--HHhc-cCcc-CCCCe
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR------SMPDIVVATPGRMID--HLRN-SMSV-DLDDL 272 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~------~~~dIvI~TP~~L~~--~l~~-~~~~-~l~~i 272 (729)
+|+++|+.++...+.. .++.+..+.++.....+...+. ..++|||+||++|.. .+.+ ...+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999754444433 4788999999988766654443 458999999999853 1211 1111 23458
Q ss_pred eEEEEeCcchhhcCC--hHHHHHHH--HHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEE
Q 004808 273 AVLILDEADRLLELG--FSAEIHEL--VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348 (729)
Q Consensus 273 ~~lVvDEah~ll~~g--f~~~i~~i--l~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~ 348 (729)
.+|||||||++++|| |+..+..+ +....+..|+++||||+++.+...+...+.....+.......++ ++...++.
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~ 661 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVP 661 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEec
Confidence 899999999999998 66766553 33444568899999999999887665544332222222222233 33322221
Q ss_pred eehhhhhhHHHHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc
Q 004808 349 IRRMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (729)
Q Consensus 349 ~~~~~~~~k~~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT 427 (729)
.. ......+..++. ...+..+||||.|+..++.++..|...|+.+..|||+|++.+|..+++.|..|+++|||||
T Consensus 662 --k~--kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 662 --KT--KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred --cc--hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 11 111223334443 3346689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHH
Q 004808 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 428 d~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~ 487 (729)
+++++|||+|+|++||||++|.+++.|+||+|||||.|.+|.|++|++..|...++.+..
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988877777664
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-47 Score=431.30 Aligned_cols=326 Identities=22% Similarity=0.303 Sum_probs=255.6
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. ++.+|||+||++|+.|++..+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~--- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKA--- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHH---
Confidence 479999999999999999999999999999999999999999742 23589999999999998888775
Q ss_pred ccCceEEEEecCCChHHHHHH----HhcCCCeEEECchHHHHHHhccCcc-CCCCeeEEEEeCcchhhcCC--hHHHHHH
Q 004808 222 FTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELG--FSAEIHE 294 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~----l~~~~dIvI~TP~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll~~g--f~~~i~~ 294 (729)
.++.+..+.++......... ....++|+++||++|.....-...+ .+..+.+|||||||++++|| |...+..
T Consensus 74 -~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 74 -SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred -cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 36778888777665533222 2345899999999986432110112 46789999999999999998 5555544
Q ss_pred H---HHhcCcCceEEEEecccchhHHHHHHHh--cCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhh-cc
Q 004808 295 L---VRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KT 368 (729)
Q Consensus 295 i---l~~~~~~~q~il~SATl~~~v~~l~~~~--l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~-~~ 368 (729)
+ ...+ +..|+++||||+++.+...+... +..|..+... ..++ ++...+... .. .....+..++. ..
T Consensus 153 l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--~~r~-nl~~~v~~~---~~-~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 153 LGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS--FDRP-NLYYEVRRK---TP-KILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC--CCCC-CcEEEEEeC---Cc-cHHHHHHHHHHHhc
Confidence 3 3333 56789999999999876655444 3445443321 1122 232222111 11 12223334443 34
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P 448 (729)
.+..+||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 449 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 449 ~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
.++..|+||+|||||.|..|.|++|+++.|...++.+...
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999999999999999998888877643
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-45 Score=427.20 Aligned_cols=330 Identities=21% Similarity=0.278 Sum_probs=257.8
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHH
Q 004808 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (729)
Q Consensus 135 ~l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~ 213 (729)
.....|.. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.|+.
T Consensus 12 ~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 12 LAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHH
Confidence 33344433 79999999999999999999999999999999999999999843 235899999999999998
Q ss_pred HHHHHHhhccCceEEEEecCCChHHHHHH----HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC--
Q 004808 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-- 287 (729)
Q Consensus 214 ~~~~~l~~~~~i~v~~~~gg~~~~~~~~~----l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-- 287 (729)
+.+..+ ++.+..+.++......... .....+|+++||++|....... .+....+++|||||||++++||
T Consensus 83 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccCc
Confidence 888763 6777777777665543322 2245789999999987432111 2334578999999999999998
Q ss_pred hHHHHHHH---HHhcCcCceEEEEecccchhHHHHHHHh--cCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 288 FSAEIHEL---VRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 288 f~~~i~~i---l~~~~~~~q~il~SATl~~~v~~l~~~~--l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
|...+..+ ...+ +..+++++|||+++.+...+... +..|..... ...++ ++...++. . ......+.
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r~-nl~~~v~~--~---~~~~~~l~ 228 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRP-NIRYTLVE--K---FKPLDQLM 228 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCCC-cceeeeee--c---cchHHHHH
Confidence 55544333 3333 46889999999998876544333 344443322 11122 22222111 1 12233455
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++....+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|+.|..+|||||+++++|||+|+|++|
T Consensus 229 ~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 55555667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHH
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~ 487 (729)
|||++|.+...|+||+|||||.|.+|.|++|+++.|...++.+..
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877776553
No 40
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-47 Score=370.40 Aligned_cols=332 Identities=35% Similarity=0.609 Sum_probs=290.2
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEE
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vL 200 (729)
..+.+.|.++-|.|.|++++...||..|+.+|.+|||.++.|-|+++.|..|.|||.+|.|..|+.+-.-+. ...||
T Consensus 38 ~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g---~vsvl 114 (387)
T KOG0329|consen 38 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG---QVSVL 114 (387)
T ss_pred EEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC---eEEEE
Confidence 456678999999999999999999999999999999999999999999999999999999999998754433 45699
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 201 Il~PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
|+|.||+||.|+.....+|+++ +++++.+++||.........+.+.|+|+|+|||+++.+.++. .++|.++..+|+||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDE 193 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhh
Confidence 9999999999999999999998 789999999999999888889999999999999999988875 79999999999999
Q ss_pred cchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCC-CCCceeEEEEeehhhhhhH
Q 004808 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREVNQ 357 (729)
Q Consensus 280 ah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~k 357 (729)
||.|+. ..++..+.+|.+..|...|++.||||++.++...+..++.+|..+.++..... .-.+.|+++.+. +..+
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk---e~eK 270 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK---ENEK 270 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh---hhhh
Confidence 999985 56889999999999999999999999999999999999999998888765542 335666666654 3455
Q ss_pred HHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC
Q 004808 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (729)
Q Consensus 358 ~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~ 437 (729)
...+..++....-..++||+.+... | + | +.+ ||||++++||+||.
T Consensus 271 Nrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdie 315 (387)
T KOG0329|consen 271 NRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIE 315 (387)
T ss_pred hhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcc
Confidence 5667777776667899999988765 0 0 2 223 89999999999999
Q ss_pred CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEecc-CcHHHHHHHHHHhccccc
Q 004808 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 438 ~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~-~d~~~l~~i~~~~~~~~~ 494 (729)
.|+.|||||+|.++.+|+||+|||||.|..|.+|+|++. ++..++..+..++...+.
T Consensus 316 rvNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329|consen 316 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred cceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHh
Confidence 999999999999999999999999999999999999986 577888888887755443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-44 Score=418.84 Aligned_cols=324 Identities=24% Similarity=0.338 Sum_probs=259.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.|++..+..+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 389999999999999999999999999999999999999999742 235899999999999988888764
Q ss_pred ccCceEEEEecCCChHHHHHH----HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC--hHHHHHHH
Q 004808 222 FTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~----l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~i 295 (729)
++.+..+.++.+....... ..+..+|+++||++|....... .+....+++|||||||++..|| |...+..+
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 6788888888776554332 2356899999999986533221 3446789999999999999988 55555444
Q ss_pred ---HHhcCcCceEEEEecccchhHHHHHHHhcC--CCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCC
Q 004808 296 ---VRLCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (729)
Q Consensus 296 ---l~~~~~~~q~il~SATl~~~v~~l~~~~l~--~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~ 370 (729)
...+|. .+++++|||+++.+...+...+. .+..+. ....++ ++...+... ..+...+..++....+
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~-nl~~~v~~~-----~~~~~~l~~~l~~~~~ 224 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI--TSFDRP-NLRFSVVKK-----NNKQKFLLDYLKKHRG 224 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCC-CcEEEEEeC-----CCHHHHHHHHHHhcCC
Confidence 344444 45999999999988776655543 333222 122222 232222211 1233445555555557
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCC
Q 004808 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (729)
Q Consensus 371 ~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s 450 (729)
.++||||+|+..++.++.+|...|+++..+||+|+..+|..+++.|..|.++|||||+++++|||+|+|++||+|++|.+
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s 304 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN 304 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 451 ~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
+..|+|++||+||.|..|.|++|+++.|...++.+...
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998887776543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.2e-43 Score=421.65 Aligned_cols=339 Identities=22% Similarity=0.307 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC---CCCcEEEEEcCcHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR---IPAIRVLILTPTREL 208 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~vLIl~PtreL 208 (729)
|++.+...+.. +|..|||+|.++||.++.|+|+|++||||||||++|.+|++++++..... ..++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777665 79999999999999999999999999999999999999999998753221 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCcc--CCCCeeE
Q 004808 209 AVQVHSMIEK-------IA----QF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV--DLDDLAV 274 (729)
Q Consensus 209 a~Q~~~~~~~-------l~----~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~--~l~~i~~ 274 (729)
|.|++..+.. ++ .. .++++.+.+|+.+.......+...++|+||||++|..++.+. .+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999876552 22 11 277889999999888777778888999999999998877543 22 4789999
Q ss_pred EEEeCcchhhcCChHHHH----HHHHHhcCcCceEEEEecccchhHHHHHHHhc-------CCCeEEecCCCCCCCCCce
Q 004808 275 LILDEADRLLELGFSAEI----HELVRLCPKRRQTMLFSATLTEDVDELIKLSL-------TKPLRLSADPSAKRPSTLT 343 (729)
Q Consensus 275 lVvDEah~ll~~gf~~~i----~~il~~~~~~~q~il~SATl~~~v~~l~~~~l-------~~p~~i~~~~~~~~~~~l~ 343 (729)
|||||||.+++..+...+ ..+....+...|+|++|||+++. ..+..... ..++.+. .........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEE
Confidence 999999999976544433 33444455678999999999762 22222211 1122221 11111111111
Q ss_pred eE-----EEEeehh-hhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHH
Q 004808 344 EE-----VVRIRRM-REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLE 411 (729)
Q Consensus 344 ~~-----~~~~~~~-~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~ 411 (729)
.. ....... ........+..++. .+.++||||+|+..++.++..|... +..+..+||+|++.+|..
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHH
Confidence 00 0000000 00111222333332 2568999999999999999988762 467999999999999999
Q ss_pred HHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccC-CCccEEEEEecc
Q 004808 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTD 476 (729)
Q Consensus 412 ~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~-G~~G~~i~l~~~ 476 (729)
+++.|++|.++|||||+++++|||||+|++||+|+.|.++..|+||+||+||. |..+.+++++..
T Consensus 332 ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 332 VEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999986 433444444443
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-43 Score=419.77 Aligned_cols=334 Identities=24% Similarity=0.313 Sum_probs=257.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
.|++|+|++.+++++...||..|+|+|.+|++. ++.|+|++++||||||||++|.+|++.++. ++.++|||+|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeC
Confidence 478899999999999999999999999999998 778999999999999999999999999984 2447999999
Q ss_pred cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
|++||.|+++.+..+.. .++++..++|+...... ....++|+||||+++..++++. ...+..+++|||||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999999998754 48899999998764432 2345899999999998888764 3447899999999999999
Q ss_pred cCChHHHHHHHHHh---cCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE------------Ee
Q 004808 285 ELGFSAEIHELVRL---CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV------------RI 349 (729)
Q Consensus 285 ~~gf~~~i~~il~~---~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~------------~~ 349 (729)
+.++...+..++.. .+...|+|++|||+++ ..++....-...+ ....+|..+...+. .+
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~-----~~~~rpv~l~~~v~~~~~~~~~~~~~~~ 224 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELV-----DSEWRPIDLREGVFYGGAIHFDDSQREV 224 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcc-----cCCCCCCCCeeeEecCCeeccccccccC
Confidence 88887777666544 4567899999999975 2233222111110 00111111111110 00
Q ss_pred ehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc------------------------------------
Q 004808 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------------ 393 (729)
Q Consensus 350 ~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------------ 393 (729)
...........+...+. .++++||||+|+..++.++..|...
T Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 225 EVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 00000111222222222 4679999999999999887776532
Q ss_pred CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----eC-----CCCChhhHHHHhcccccC
Q 004808 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-----CPRDLTSYVHRVGRTARA 464 (729)
Q Consensus 394 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~d-----~P~s~~~yiQriGRagR~ 464 (729)
...++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 76 688999999999999998
Q ss_pred CCc--cEEEEEeccCc
Q 004808 465 GRE--GYAVTFVTDND 478 (729)
Q Consensus 465 G~~--G~~i~l~~~~d 478 (729)
|.. |.|++++...+
T Consensus 383 g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 383 GLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCceEEEEecCch
Confidence 865 99999987653
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9e-43 Score=400.88 Aligned_cols=315 Identities=21% Similarity=0.230 Sum_probs=242.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEE-EcCcHHHHHHHHHHHHHHh
Q 004808 143 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI-LTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~-dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLI-l~PtreLa~Q~~~~~~~l~ 220 (729)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++.. .. ....++.|| ++|||+|+.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc---cccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 5898 9999999999999998 57788999999999766555522 11 123344555 7799999999999999998
Q ss_pred hcc-----------------------CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCcc----------
Q 004808 221 QFT-----------------------DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV---------- 267 (729)
Q Consensus 221 ~~~-----------------------~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~---------- 267 (729)
... ++++..++||.+...++..+..+++|||+|+ +++.+...+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccc
Confidence 754 4889999999999999999999999999995 455443210
Q ss_pred -----CCCCeeEEEEeCcchhhcCChHHHHHHHHHhc--Cc---CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCC
Q 004808 268 -----DLDDLAVLILDEADRLLELGFSAEIHELVRLC--PK---RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337 (729)
Q Consensus 268 -----~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~--~~---~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~ 337 (729)
.|.++++||||||| ++++|...+..|+..+ ++ ++|+++||||++.++..+...++.++..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999965 43 269999999999988888777777776665543333
Q ss_pred CCCCceeEEEEeehhhhh-hHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHH-----H
Q 004808 338 RPSTLTEEVVRIRRMREV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL-----E 411 (729)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~-~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~-----~ 411 (729)
....+.+. +........ .....+..++ ...++++||||||+..++.++..|...++ ..|||.|++.+|. .
T Consensus 241 ~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 241 AAKKIVKL-VPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred cccceEEE-EecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHH
Confidence 33334442 222111100 1111122222 23457899999999999999999998876 8999999999999 8
Q ss_pred HHHHHhc----CC-------ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCc-cEEEEEec
Q 004808 412 ALELFRK----QH-------VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE-GYAVTFVT 475 (729)
Q Consensus 412 ~l~~F~~----g~-------~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~-G~~i~l~~ 475 (729)
+++.|+. |. ..|||||+++++||||+. ++||++..| ...|+||+||+||.|+. |..++++.
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 8999987 54 689999999999999986 899998877 68999999999999985 34355553
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-42 Score=406.43 Aligned_cols=335 Identities=20% Similarity=0.270 Sum_probs=261.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
.|.++++++.+.+.+...||..|+|+|.++++. ++.|+|+++++|||||||++|.+|++.+++.. +.++|+|+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----GGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----CCeEEEEeC
Confidence 477899999999999999999999999999985 88999999999999999999999999988643 347999999
Q ss_pred cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++.+. ...+.++++|||||+|.+.
T Consensus 77 ~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 77 LKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccC
Confidence 99999999999987643 58899999998765432 2356899999999998887754 3457899999999999999
Q ss_pred cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeE-----EEEeehhh----hh
Q 004808 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-----VVRIRRMR----EV 355 (729)
Q Consensus 285 ~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~-----~~~~~~~~----~~ 355 (729)
++++...+..++..++...|+|++|||+++ ..++.. ++..+... ...+|..+... +..+.... ..
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~----~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV----SDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc----CCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 988999999999999889999999999975 344443 33322111 11122222111 11111100 00
Q ss_pred hHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh---------------------------------cCCceeeccC
Q 004808 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---------------------------------AALKAAELHG 402 (729)
Q Consensus 356 ~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~lhg 402 (729)
.....+..++. .+.++||||+|+..++.++..|.. ....++.+||
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 11122223332 357899999999998877655521 1235889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE-------eCCCC-ChhhHHHHhcccccCC--CccEEEE
Q 004808 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------YACPR-DLTSYVHRVGRTARAG--REGYAVT 472 (729)
Q Consensus 403 ~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~-------~d~P~-s~~~yiQriGRagR~G--~~G~~i~ 472 (729)
+|++.+|..+.+.|++|.++|||||+++++|+|+|++++||. |+.|. ....|+||+|||||.| ..|.|++
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii 383 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAII 383 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEE
Confidence 999999999999999999999999999999999999999994 55554 4679999999999965 5799999
Q ss_pred EeccCc
Q 004808 473 FVTDND 478 (729)
Q Consensus 473 l~~~~d 478 (729)
++...+
T Consensus 384 ~~~~~~ 389 (720)
T PRK00254 384 VATTEE 389 (720)
T ss_pred EecCcc
Confidence 987655
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.7e-41 Score=401.37 Aligned_cols=333 Identities=21% Similarity=0.225 Sum_probs=259.2
Q ss_pred CCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 131 NLSRPLLRACE-ALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 131 ~l~~~l~~~l~-~~g~~~pt~iQ~~~i~~ll~g------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+..+...+. .++|. |||+|..+|+.++.+ .|+|++|+||||||.+|++|++..+.. +.+++||+
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------g~qvlvLv 507 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------GKQVAVLV 507 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------CCeEEEEe
Confidence 34455555554 46885 999999999999985 799999999999999999999988753 35799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH---Hh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
||++||.|+++.+..+....++++..++|+.+....... +. +.++|||+||..| .. .+.+.++++|||||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~--~v~f~~L~llVIDE 581 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QK--DVKFKDLGLLIIDE 581 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hC--CCCcccCCEEEeec
Confidence 999999999999999877778899999988775544332 33 3589999999432 22 56788999999999
Q ss_pred cchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHH
Q 004808 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (729)
Q Consensus 280 ah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~ 359 (729)
+|++ .......+..++..+|+++||||+.+....+....+.++..+...+.... .+...+..... ......
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~--~V~t~v~~~~~--~~i~~~ 652 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL--PVRTFVMEYDP--ELVREA 652 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc--ceEEEEEecCH--HHHHHH
Confidence 9994 23344556677788999999999988776666556666665554333221 23333322211 111111
Q ss_pred HHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC
Q 004808 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (729)
Q Consensus 360 ~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~ 437 (729)
++..+ ..++.++|||++...++.++..|... ++.+..+||.|++.+|..++..|++|+.+|||||+++++|||+|
T Consensus 653 i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 653 IRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 22222 23578999999999999999999874 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC-ChhhHHHHhcccccCCCccEEEEEeccC------cHHHHHHHHHH
Q 004808 438 GVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (729)
Q Consensus 438 ~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~i~l~~~~------d~~~l~~i~~~ 488 (729)
++++||++++|. +...|+||+||+||.|+.|.||+++.+. ....|+.|.+.
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999975 6779999999999999999999998643 35566666654
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.2e-41 Score=405.12 Aligned_cols=330 Identities=21% Similarity=0.222 Sum_probs=259.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 134 ~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
....+.+..++| .||++|.++|+.++.+ .|+|++|+||+|||.+|+++++..+. .+.+|+||+||++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~e 660 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHH
Confidence 345566778899 6999999999999997 89999999999999999888876653 3457999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh----cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 208 La~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||.|+++.+..+....++++.+++|+.+...+...+. +.++|||+||+.| .. .+.+.++++|||||+|++
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--DVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC--CCCHhhCCEEEEechhhc
Confidence 9999999999876666788888999888766654443 4689999999644 22 456789999999999996
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
|+. ....+..++..+|+++||||+.+....+....+.++..+...+... ..+.+.+..+.. ...+...+..
T Consensus 735 ---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~--~~~k~~il~e 805 (1147)
T PRK10689 735 ---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDS--LVVREAILRE 805 (1147)
T ss_pred ---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCc--HHHHHHHHHH
Confidence 333 2455677888999999999998888877777777887776543321 123333332221 1123333333
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccE
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 441 (729)
+. .++.++|||++...++.++..|... ++.+..+||+|++.+|.+++..|++|+.+|||||+++++|||||+|++
T Consensus 806 l~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 806 IL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred Hh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 33 2578999999999999999999876 789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CChhhHHHHhcccccCCCccEEEEEeccC------cHHHHHHHHHH
Q 004808 442 VINYACP-RDLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (729)
Q Consensus 442 VI~~d~P-~s~~~yiQriGRagR~G~~G~~i~l~~~~------d~~~l~~i~~~ 488 (729)
||+.+.+ .+...|+||+||+||.|+.|.|++++... ....|+.|.+.
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 9955443 35567999999999999999999988543 34556666554
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.7e-41 Score=404.99 Aligned_cols=283 Identities=22% Similarity=0.251 Sum_probs=223.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+ .||++|..++|.++.|+|++++||||||||+ |.++++..+.. .++++|||+|||+|+.|+++.+..++..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 477 7999999999999999999999999999996 55666554432 2568999999999999999999999988
Q ss_pred cCceEEEEecCCCh-----HHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-----------
Q 004808 223 TDIRCCLVVGGLST-----KMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (729)
Q Consensus 223 ~~i~v~~~~gg~~~-----~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~----------- 285 (729)
.++.+..++|+.+. ......+. ..++|+|+||++|.+++. .+....+++|||||||+|+.
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888888777542 22223334 468999999999999876 35566799999999999996
Q ss_pred CChH-HHHHHHHHhcCc------------------------CceEEEEecccchh-HHHHHHHhcCCCeEEecCCCCCCC
Q 004808 286 LGFS-AEIHELVRLCPK------------------------RRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRP 339 (729)
Q Consensus 286 ~gf~-~~i~~il~~~~~------------------------~~q~il~SATl~~~-v~~l~~~~l~~p~~i~~~~~~~~~ 339 (729)
+||. ..+..++..++. .+|+++||||+++. +.. ..+..+..+.+.......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 6784 667777777664 68999999999875 332 223444445444443444
Q ss_pred CCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHH---HHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH
Q 004808 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416 (729)
Q Consensus 340 ~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F 416 (729)
.++.+.++... .+...+..++... +.++||||++... ++.+..+|...|+++..+||+| .+.++.|
T Consensus 304 rnI~~~yi~~~-----~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 304 RNIVDSYIVDE-----DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred CCceEEEEEcc-----cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 56777666443 2344555565544 4689999999776 9999999999999999999999 2346999
Q ss_pred hcCCceEEEE----cCccccccCCCC-ccEEEEeCCCC
Q 004808 417 RKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (729)
Q Consensus 417 ~~g~~~vLVa----Td~~~rGlDi~~-v~~VI~~d~P~ 449 (729)
++|+++|||| |++++||||+|+ |++||||++|.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 699999999999 89999999996
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-40 Score=368.76 Aligned_cols=329 Identities=23% Similarity=0.323 Sum_probs=260.5
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
-+||..++|-|.++|..++.|+|+++..|||.||+++|.||++-. .+-+|||.|..+|+...++.+..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~--- 79 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEA--- 79 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHH---
Confidence 369999999999999999999999999999999999999999733 22489999999999766666665
Q ss_pred ccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC--hHHHHHHH
Q 004808 222 FTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~i 295 (729)
.|+.+..+.+..+..+....+ ....++++.+|++|..--... .+.-..+.++||||||+++.|| |++.+..+
T Consensus 80 -~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 80 -AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred -cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 478888888887766554433 234799999999985432111 2235678899999999999998 88887776
Q ss_pred HHh---cCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCe
Q 004808 296 VRL---CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSK 372 (729)
Q Consensus 296 l~~---~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~ 372 (729)
... +| ..+++.+|||.++.+...+...+.-...........+| ++...++... ....+...+.. ......+.
T Consensus 158 g~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~--~~~~q~~fi~~-~~~~~~~~ 232 (590)
T COG0514 158 GRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKG--EPSDQLAFLAT-VLPQLSKS 232 (590)
T ss_pred HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcc--cHHHHHHHHHh-hccccCCC
Confidence 443 44 78899999999999888776554432221222222233 3332222221 11122222222 12445677
Q ss_pred EEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChh
Q 004808 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (729)
Q Consensus 373 vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~ 452 (729)
.||||.|+..++.++.+|...|+.+..+|++|+..+|..+.+.|..++..|+|||.++++|||.|+|++||||++|.|++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 453 SYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 453 ~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
.|+|-+|||||.|.+..|++|+++.|....+.+.+..
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999999988888776653
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.2e-39 Score=380.71 Aligned_cols=315 Identities=21% Similarity=0.259 Sum_probs=236.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 137 LRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 137 ~~~l~~~g~~~pt~iQ~~~i~~ll~g------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
...+..++| .||++|.++|+.++.+ .++|++|+||||||++|++|++..+. .+.+++|++||++||.
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~ 324 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILAE 324 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHH
Confidence 344456788 5999999999999987 48999999999999999999998874 3457999999999999
Q ss_pred HHHHHHHHHhhccCceEEEEecCCChHHHHH---HHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC
Q 004808 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (729)
Q Consensus 211 Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (729)
|+++.+..++...++++.+++|+.+...... .+. +.++|||+||+.+.+ .+.+.++++|||||+|++..
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~- 397 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGV- 397 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhH-
Confidence 9999999998888999999999988654333 333 359999999988743 34578899999999999632
Q ss_pred ChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhh
Q 004808 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366 (729)
Q Consensus 287 gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~ 366 (729)
.....+......+++++||||+.+....+.......+..+...+... ..+...++... ........+...+
T Consensus 398 ----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r--~~i~~~~~~~~--~~~~~~~~i~~~~- 468 (681)
T PRK10917 398 ----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGR--KPITTVVIPDS--RRDEVYERIREEI- 468 (681)
T ss_pred ----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCC--CCcEEEEeCcc--cHHHHHHHHHHHH-
Confidence 22223334455689999999987765544432222222222211111 12332222211 1111112222222
Q ss_pred ccCCCeEEEEeCcH--------HHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 367 KTFTSKVIIFSGTK--------QAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 367 ~~~~~~vLIF~~s~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
..+.+++|||+.. ..+..+...|... ++.+..+||.|++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 469 -~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 469 -AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred -HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 3467899999954 3455566666544 5789999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC-ChhhHHHHhcccccCCCccEEEEEec
Q 004808 437 IGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (729)
Q Consensus 437 ~~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~i~l~~ 475 (729)
|++++||+|++|. ....|.||+||+||.|..|.|++++.
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999997 57788899999999999999999995
No 51
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.6e-40 Score=375.22 Aligned_cols=314 Identities=18% Similarity=0.182 Sum_probs=234.1
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHH---------hhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAA---------FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a---------~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
..+|+++++.++.|+++|++|+||||||++ |++|.+..+..-.......+++|++|||+||.|+...+...
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999997 44455554421111123457999999999999999998776
Q ss_pred hhc---cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHH
Q 004808 220 AQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (729)
Q Consensus 220 ~~~---~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il 296 (729)
..+ .+..+.+.+||... ..........+|+|+|++.. ...|..+++|||||||++...+ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 554 46778888999873 22222333679999997631 2347889999999999988765 4445555
Q ss_pred Hhc-CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeeh-------hhhhhHHHHHHHHhhc-
Q 004808 297 RLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-------MREVNQEAVLLSLCSK- 367 (729)
Q Consensus 297 ~~~-~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~-------~~~~~k~~~l~~l~~~- 367 (729)
... +..+|+++||||++.++..+ ..++.+|..+.+... ....+.+.++.... .....+...+..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 444 34569999999999888766 567788877776422 22344554443211 0011122222222221
Q ss_pred -cCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHH-hcCCceEEEEcCccccccCCCCccEEE
Q 004808 368 -TFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELF-RKQHVDFLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 368 -~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F-~~g~~~vLVaTd~~~rGlDi~~v~~VI 443 (729)
..++.+||||+++..++.+...|... ++.+..|||.|++. .++++.| ++|+.+|||||++++||||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23468999999999999999999876 79999999999975 4667777 689999999999999999999999999
Q ss_pred EeC---CCC---------ChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 444 NYA---CPR---------DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 444 ~~d---~P~---------s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
+++ .|. |.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999 565 788999999999998 79999999998764
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.5e-39 Score=369.33 Aligned_cols=376 Identities=23% Similarity=0.294 Sum_probs=287.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCC--CCCCCcEEEEEcCcHHH
Q 004808 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTPTREL 208 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~--~~~~~~~vLIl~PtreL 208 (729)
-|++.+.+.+... |..|||.|..+||.++.|+|+|+.||||||||+++.||++..++..+ ....+..+|+|+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788999999988 99999999999999999999999999999999999999999999884 22346889999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc-CccCCCCeeEEEEeCcchhhcCC
Q 004808 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRLLELG 287 (729)
Q Consensus 209 a~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~-~~~~l~~i~~lVvDEah~ll~~g 287 (729)
...+...+..++...|+.+.+-+|..+.......+.+.|||+|+||+.|.-+|... ..-.|.++.+|||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999999998888888999999999999998877653 12248999999999999988543
Q ss_pred ----hHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCC--CeEEecCCCCCCCCCceeEEEEee----hhhhhhH
Q 004808 288 ----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIR----RMREVNQ 357 (729)
Q Consensus 288 ----f~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~--p~~i~~~~~~~~~~~l~~~~~~~~----~~~~~~k 357 (729)
..-.+..+.+..+ ..|.|++|||..+. ....+..... +..+......... .+.-...... .......
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~-~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKL-EIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcc-eEEEEecCCccccccchhHHH
Confidence 2233455556666 89999999999843 3344333333 3333332222211 1111100000 0011122
Q ss_pred HHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcC-CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 358 ~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
...+..++... ..+|||+||+..++.+...|...+ ..+..+||.++..+|..+.+.|++|+.+++|||..++-|||+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 33344444443 389999999999999999998886 899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhhHHHHhccccc-CCCccEEEEEeccCcHHHHHHHH--H-HhccccchhhhhhhhHHHHHHHHHH
Q 004808 437 IGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTDNDRSLLKAIA--K-RAGSKLKSRIVAEQSITKWSKIIEQ 512 (729)
Q Consensus 437 ~~v~~VI~~d~P~s~~~yiQriGRagR-~G~~G~~i~l~~~~d~~~l~~i~--~-~~~~~~~~~~~~~~~~~~~~~~i~~ 512 (729)
.+|+.||+|..|.++..++||+||+|+ .|....++++... -..+++.+. + .....+....++.+.++.+.+.+-.
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg 399 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVG 399 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHH
Confidence 999999999999999999999999986 6666677776666 334444432 2 2233444445555556555555444
Q ss_pred H
Q 004808 513 M 513 (729)
Q Consensus 513 ~ 513 (729)
+
T Consensus 400 ~ 400 (814)
T COG1201 400 M 400 (814)
T ss_pred H
Confidence 3
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-39 Score=382.12 Aligned_cols=339 Identities=18% Similarity=0.228 Sum_probs=252.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
.|++++|++.+++.+...+|. |+|+|.++++.++.|+|++++||||||||+++.++++..+.. +.++|+|+|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------GLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------CCcEEEEech
Confidence 467899999999999999997 999999999999999999999999999999999999988753 2469999999
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 206 reLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
++||.|+++.+..+. ..++++...+|+...... ....++|+|+||+++..++.+. ...+.++++|||||||.+.+
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccC
Confidence 999999999998864 357888888888664322 2346799999999998887764 34588999999999999988
Q ss_pred CChHHHHHHHHH---hcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEee----hhhhhhHH
Q 004808 286 LGFSAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR----RMREVNQE 358 (729)
Q Consensus 286 ~gf~~~i~~il~---~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~----~~~~~~k~ 358 (729)
.++...+..++. .++...|+|++|||+++ ..++... +..+.. ....++..+...+.... ........
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~w-l~~~~~----~~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQW-LNASLI----KSNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHH-hCCCcc----CCCCCCCCeEEEEEecCeeeecccccccc
Confidence 777666665543 45677899999999975 3444432 222211 11112222221111000 00000000
Q ss_pred HHHHHHhh--ccCCCeEEEEeCcHHHHHHHHHHHhhc-------------------------CCceeeccCCCCHHHHHH
Q 004808 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------ALKAAELHGNLTQAQRLE 411 (729)
Q Consensus 359 ~~l~~l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~~~~~~R~~ 411 (729)
.+..++. ...++++||||+++..++.++..|... ...++.+||+|++.+|..
T Consensus 224 -~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 -DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred -cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1112222 124678999999999999998877542 124788999999999999
Q ss_pred HHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC---------CCChhhHHHHhcccccCCC--ccEEEEEeccCc-H
Q 004808 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---------PRDLTSYVHRVGRTARAGR--EGYAVTFVTDND-R 479 (729)
Q Consensus 412 ~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~---------P~s~~~yiQriGRagR~G~--~G~~i~l~~~~d-~ 479 (729)
+++.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+|||||.|. .|.+++++...+ .
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~ 381 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH
Confidence 9999999999999999999999999986 4555443 4578899999999999884 577888866543 3
Q ss_pred HHHHH
Q 004808 480 SLLKA 484 (729)
Q Consensus 480 ~~l~~ 484 (729)
..++.
T Consensus 382 ~~~~~ 386 (674)
T PRK01172 382 DAAKK 386 (674)
T ss_pred HHHHH
Confidence 33333
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.6e-39 Score=374.45 Aligned_cols=318 Identities=21% Similarity=0.250 Sum_probs=235.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 134 ~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
..+...+..++| .||++|.++|+.++.+ .+.|++|+||||||++|++|++..+. .+.+++|++||++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~ 295 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEI 295 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHH
Confidence 335566788999 6999999999999986 26899999999999999999998874 2457999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCChHHHHH---HH-hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---AL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 208 La~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~---~l-~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||.|+++.+..++...++++.+++|+........ .+ .+.++|||+||+.|.+ .+.+.++++|||||+|++
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhc
Confidence 9999999999998878999999999987655332 23 2458999999998753 355788999999999985
Q ss_pred hcCChHHHHHHHHHhcC--cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHH
Q 004808 284 LELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~--~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l 361 (729)
... ....+....+ ..+++++||||+.+....+..........+...+... ..+...++... .....+
T Consensus 370 g~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r--~~i~~~~~~~~-----~~~~~~ 438 (630)
T TIGR00643 370 GVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGR--KPITTVLIKHD-----EKDIVY 438 (630)
T ss_pred cHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCC--CceEEEEeCcc-----hHHHHH
Confidence 321 1122233332 2678999999987654433321111111111111111 12222222111 112222
Q ss_pred HHHhhc-cCCCeEEEEeCcH--------HHHHHHHHHHhh--cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 004808 362 LSLCSK-TFTSKVIIFSGTK--------QAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (729)
Q Consensus 362 ~~l~~~-~~~~~vLIF~~s~--------~~~~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~ 430 (729)
..+... ..+..++|||+.. ..+..+...|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 222222 2357899999875 345556666654 47889999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCC-ChhhHHHHhcccccCCCccEEEEEec
Q 004808 431 ARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (729)
Q Consensus 431 ~rGlDi~~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~i~l~~ 475 (729)
++|||+|++++||+|+.|. +...|.||+||+||.|..|.|++++.
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999997 67888899999999999999999983
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.7e-39 Score=389.50 Aligned_cols=339 Identities=21% Similarity=0.291 Sum_probs=241.3
Q ss_pred EEcCCCchhhHHhhhhhhHHHhcCCC-------CCCCcEEEEEcCcHHHHHHHHHHHHHHh------------hccCceE
Q 004808 167 GSAITGSGKTAAFALPTLERLLYRPK-------RIPAIRVLILTPTRELAVQVHSMIEKIA------------QFTDIRC 227 (729)
Q Consensus 167 v~a~TGsGKT~a~~lpil~~l~~~~~-------~~~~~~vLIl~PtreLa~Q~~~~~~~l~------------~~~~i~v 227 (729)
|+||||||||++|.||+|..++.... ...++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431 1245789999999999999999886521 1247899
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC--C--hHHHHHHHHHhcCcCc
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--G--FSAEIHELVRLCPKRR 303 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~--g--f~~~i~~il~~~~~~~ 303 (729)
...+|+.+...+...+...+||||+||++|..+|.+.....++++++|||||+|.|++. | +...+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777778889999999999998876543346899999999999999864 3 3445566667778889
Q ss_pred eEEEEecccchhHHHHHHHhc-CCCeEEecCCCCCCCCCceeEEEEeehhhh------------------hhHHHHHHHH
Q 004808 304 QTMLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMRE------------------VNQEAVLLSL 364 (729)
Q Consensus 304 q~il~SATl~~~v~~l~~~~l-~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~------------------~~k~~~l~~l 364 (729)
|+|+||||+++ ..++..... ..|+.+.. .....+..+. .++....... .....+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 344443332 23554432 2222222222 1111111000 0000111112
Q ss_pred hh-ccCCCeEEEEeCcHHHHHHHHHHHhhcC---------------------------------CceeeccCCCCHHHHH
Q 004808 365 CS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------------------LKAAELHGNLTQAQRL 410 (729)
Q Consensus 365 ~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lhg~~~~~~R~ 410 (729)
+. ...+.++||||||+..++.+...|+... +.+..+||+|++.+|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 21 1235789999999999999998886531 1256899999999999
Q ss_pred HHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccC-CCccEEEEEeccCcHH-HHHH---H
Q 004808 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRS-LLKA---I 485 (729)
Q Consensus 411 ~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~-G~~G~~i~l~~~~d~~-~l~~---i 485 (729)
.+.+.|++|.+++||||+.+++||||+.|++||+|+.|.++.+|+||+||+||. |..+.+++ .+.+.. .+.. +
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli--~p~~r~dlle~~~~v 395 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLF--FPRTRRDLVDSAVIV 395 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEE--EeCcHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999995 33444553 333322 2331 3
Q ss_pred HHHhccccchhhhhhhhHHHHHHHH
Q 004808 486 AKRAGSKLKSRIVAEQSITKWSKII 510 (729)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~i 510 (729)
+......+....++.+..+.+.+.+
T Consensus 396 e~~l~g~iE~~~~p~nplDVLaqqi 420 (1490)
T PRK09751 396 ECMFAGRLENLTPPHNPLDVLAQQT 420 (1490)
T ss_pred HHHhcCCCCccCCCCChHHHHHHHH
Confidence 3344455555555555554444443
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=341.96 Aligned_cols=290 Identities=33% Similarity=0.467 Sum_probs=234.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHhhc---cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 195 PAIRVLILTPTRELAVQVHSMIEKIAQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 195 ~~~~vLIl~PtreLa~Q~~~~~~~l~~~---~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.|.+||+-|.|+|+.|.++.+.+|-.+ +.++..++.||.....|...+..+.+|||+||+||.+.+... .+.|..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g-~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG-LVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc-ceeeee
Confidence 4578999999999999999977776544 456667889999999999999999999999999999988775 678999
Q ss_pred eeEEEEeCcchhhcCChHHHHHHHHHhcCc------CceEEEEecccch-hHHHHHHHhcCCCeEEecCCCCCCCCCcee
Q 004808 272 LAVLILDEADRLLELGFSAEIHELVRLCPK------RRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTE 344 (729)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~il~~~~~------~~q~il~SATl~~-~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~ 344 (729)
..++|+||||.++..++.+.|..+...+|. ..|.++.|||+.. ++..+....++-|..+........|..+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999999999888877773 5799999999863 344455566777877777666655655554
Q ss_pred EEEEeehh-------------------------------hhhhHH-----HHHHHHhhccCCCeEEEEeCcHHHHHHHHH
Q 004808 345 EVVRIRRM-------------------------------REVNQE-----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388 (729)
Q Consensus 345 ~~~~~~~~-------------------------------~~~~k~-----~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~ 388 (729)
.+..+.+. ...... .+-+..+++....+.||||.|+.+|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 43322210 000000 011112234445789999999999999999
Q ss_pred HHhhcC---CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCC
Q 004808 389 LFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (729)
Q Consensus 389 ~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G 465 (729)
+|...| ++|.++||+..+.+|...++.|..+.+++|||||+++|||||.++-+|||.-+|.....|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998764 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeccCcHHHHHHH
Q 004808 466 REGYAVTFVTDNDRSLLKAI 485 (729)
Q Consensus 466 ~~G~~i~l~~~~d~~~l~~i 485 (729)
+-|.+|.++...-.+.+...
T Consensus 604 rmglaislvat~~ekvwyh~ 623 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHW 623 (725)
T ss_pred hcceeEEEeeccchheeehh
Confidence 99999999875544444443
No 57
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.6e-39 Score=393.47 Aligned_cols=293 Identities=21% Similarity=0.259 Sum_probs=225.3
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHH
Q 004808 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (729)
Q Consensus 135 ~l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~ 213 (729)
.+.+.+.. +|| .||++|+.+||.++.|+|+++.||||||||++++++++.... .+.++|||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHH
Confidence 34555555 899 699999999999999999999999999999966555553321 2457999999999999999
Q ss_pred HHHHHHhhcc--CceEEEEecCCChHHHHH---HHhc-CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc--
Q 004808 214 SMIEKIAQFT--DIRCCLVVGGLSTKMQET---ALRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-- 285 (729)
Q Consensus 214 ~~~~~l~~~~--~i~v~~~~gg~~~~~~~~---~l~~-~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-- 285 (729)
+.+..++... ++++..++|+.+...+.. .+.. .++|||+||++|.+++... . ...+++|||||||+|+.
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceeccccc
Confidence 9999988764 467778889988766533 3333 5899999999998877642 2 26789999999999987
Q ss_pred ---------CChHHHHHH----HHH----------------------hcCcCce-EEEEecccchhHHHHHHHhcCCCeE
Q 004808 286 ---------LGFSAEIHE----LVR----------------------LCPKRRQ-TMLFSATLTEDVDELIKLSLTKPLR 329 (729)
Q Consensus 286 ---------~gf~~~i~~----il~----------------------~~~~~~q-~il~SATl~~~v~~l~~~~l~~p~~ 329 (729)
+||...+.. ++. .+|..+| ++++|||+++... . ...+..+..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhcCeE
Confidence 477777654 332 2355566 6789999986411 1 133456666
Q ss_pred EecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHH---HHHHHHHHhhcCCceeeccCCCCH
Q 004808 330 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQ 406 (729)
Q Consensus 330 i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~~ 406 (729)
+.+........++.+.++..... .+ ..+..++... +.++||||+++.. ++.++.+|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~~---~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEKI---IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCHH---HH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66655544455667766644321 12 3455555554 5789999999875 589999999999999999995
Q ss_pred HHHHHHHHHHhcCCceEEEEc----CccccccCCCC-ccEEEEeCCCC
Q 004808 407 AQRLEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACPR 449 (729)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLVaT----d~~~rGlDi~~-v~~VI~~d~P~ 449 (729)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|.
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk 412 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPK 412 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCC
Confidence 8899999999999999999 58999999999 99999999998
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.8e-38 Score=382.82 Aligned_cols=292 Identities=23% Similarity=0.285 Sum_probs=221.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHH
Q 004808 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (729)
Q Consensus 135 ~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~ 214 (729)
.+.+.+.......|||+|+.++|.++.|+|++++||||||||+ |.+|++..+... ++++|||+|||+||.|+++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-----g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-----GKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-----CCeEEEEeCHHHHHHHHHH
Confidence 3445555444457999999999999999999999999999997 667776665432 4689999999999999999
Q ss_pred HHHHHhhccCceEE---EEecCCChHHHHH---HHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc--
Q 004808 215 MIEKIAQFTDIRCC---LVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-- 285 (729)
Q Consensus 215 ~~~~l~~~~~i~v~---~~~gg~~~~~~~~---~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-- 285 (729)
.+..++...++.+. +++|+.+...+.. .+. ++++|||+||++|.+++... .. .+++|||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhcc
Confidence 99999887666543 4678887665432 233 35999999999999887652 12 899999999999997
Q ss_pred ---------CChHHH-HHHH----------------------HHhcCcCce--EEEEeccc-chhHHHHHHHhcCCCeEE
Q 004808 286 ---------LGFSAE-IHEL----------------------VRLCPKRRQ--TMLFSATL-TEDVDELIKLSLTKPLRL 330 (729)
Q Consensus 286 ---------~gf~~~-i~~i----------------------l~~~~~~~q--~il~SATl-~~~v~~l~~~~l~~p~~i 330 (729)
+||... +..+ ++.+|..+| +++||||+ +..+.. .++..++.+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 678653 3333 234556666 56799994 544332 334455555
Q ss_pred ecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcH---HHHHHHHHHHhhcCCceeeccCCCCHH
Q 004808 331 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK---QAAHRLKILFGLAALKAAELHGNLTQA 407 (729)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~---~~~~~l~~~L~~~~~~~~~lhg~~~~~ 407 (729)
.+........++.+.++.... +...+..++... +.++||||+++ +.++.|..+|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~-----~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED-----LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc-----HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 554444444556666553321 123345555443 56899999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhcCCceEEEE----cCccccccCCCC-ccEEEEeCCCC
Q 004808 408 QRLEALELFRKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (729)
Q Consensus 408 ~R~~~l~~F~~g~~~vLVa----Td~~~rGlDi~~-v~~VI~~d~P~ 449 (729)
.+++.|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999884
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-38 Score=372.81 Aligned_cols=309 Identities=17% Similarity=0.224 Sum_probs=237.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HhhccCceEEE
Q 004808 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCL 229 (729)
Q Consensus 151 iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~-l~~~~~i~v~~ 229 (729)
+-.+++..+..++++|++|+||||||++|.+++++... ..+++||++|||++|.|+++.+.. +....+..|++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 44566677778899999999999999999999998752 235799999999999999998854 43445666776
Q ss_pred EecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc-hhhcCChHHH-HHHHHHhcCcCceEEE
Q 004808 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRRQTML 307 (729)
Q Consensus 230 ~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah-~ll~~gf~~~-i~~il~~~~~~~q~il 307 (729)
.+++.+ .....++|+|+|||+|++++.+ ...|+++++|||||+| ++++.++.-. +..+...+++..|+|+
T Consensus 80 ~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 80 RVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 666533 2345679999999999999876 4679999999999999 5777766443 3456666788899999
Q ss_pred EecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhh--hHHHHHHHHhhccCCCeEEEEeCcHHHHHH
Q 004808 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV--NQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385 (729)
Q Consensus 308 ~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~ 385 (729)
||||++... +..++.++..+..... ...+.+.+......... .....+..++.. ..+.+||||++..+++.
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~ 224 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRR 224 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHH
Confidence 999998754 3455655544443322 11233444332211100 011223333332 35789999999999999
Q ss_pred HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCC------------
Q 004808 386 LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD------------ 450 (729)
Q Consensus 386 l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s------------ 450 (729)
+...|.. .++.+..|||+|++.+|..+++.|++|..+||||||++++|||||+|++||++++|..
T Consensus 225 l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L 304 (819)
T TIGR01970 225 VQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRL 304 (819)
T ss_pred HHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCcee
Confidence 9999986 4789999999999999999999999999999999999999999999999999999853
Q ss_pred ------hhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 451 ------LTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 451 ------~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
..+|+||+|||||. ++|.||.|+++.+...
T Consensus 305 ~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 305 ETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred eEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 34589999999998 7999999999876443
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.7e-38 Score=370.30 Aligned_cols=307 Identities=17% Similarity=0.222 Sum_probs=234.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HhhccCceEEE
Q 004808 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCL 229 (729)
Q Consensus 151 iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~-l~~~~~i~v~~ 229 (729)
+-.+++..+.+++++|+.|+||||||++|.+++++... ..+++||++|||++|.|+++.+.. +....+..+++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 34456677778899999999999999999999987632 234799999999999999998854 44446777887
Q ss_pred EecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch-hhcCChH-HHHHHHHHhcCcCceEEE
Q 004808 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFS-AEIHELVRLCPKRRQTML 307 (729)
Q Consensus 230 ~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~-ll~~gf~-~~i~~il~~~~~~~q~il 307 (729)
.+++.+. ....++|+|+|||+|++++.. ...|+++++|||||+|. .++.++. ..+..++..++...|+|+
T Consensus 83 ~vr~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 83 RMRAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EecCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 7776442 224468999999999999886 46799999999999996 4554432 334456677788899999
Q ss_pred EecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh--HHHHHHHHhhccCCCeEEEEeCcHHHHHH
Q 004808 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN--QEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385 (729)
Q Consensus 308 ~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--k~~~l~~l~~~~~~~~vLIF~~s~~~~~~ 385 (729)
||||++... +..++.++..+..... ...+.+.+.......... ....+..++.. ..+.+||||++..++..
T Consensus 155 mSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~ 227 (812)
T PRK11664 155 MSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQR 227 (812)
T ss_pred EecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHH
Confidence 999998652 2455555544443322 122444444332111110 01123333332 36889999999999999
Q ss_pred HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCC------------
Q 004808 386 LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD------------ 450 (729)
Q Consensus 386 l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s------------ 450 (729)
+...|.. .++.+..+||.|++.+|..++..|++|+.+||||||++++|||||+|++||++++|..
T Consensus 228 l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L 307 (812)
T PRK11664 228 VQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRL 307 (812)
T ss_pred HHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCccee
Confidence 9999986 5788999999999999999999999999999999999999999999999999887753
Q ss_pred ------hhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 451 ------LTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 451 ------~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
-.+|+||+|||||. .+|.||.|+++.+.
T Consensus 308 ~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 308 VTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35799999999998 69999999997654
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-36 Score=344.11 Aligned_cols=321 Identities=23% Similarity=0.229 Sum_probs=245.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .|+|+|..++|.++.|+ |+.+.||+|||++|++|++.+.+. ++.|+||+||++||.|.++++..+..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~------G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA------GLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc------CCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 455 58999999999999999 999999999999999999987643 457999999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccCc------------------------cCCCCeeEEEE
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS------------------------VDLDDLAVLIL 277 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~~------------------------~~l~~i~~lVv 277 (729)
.++++++++|+.+.. .......+||+|+|..-| .++|+.... .....+.++||
T Consensus 171 lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 171 LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 999999999997643 444556789999999887 566654311 12456789999
Q ss_pred eCcchhh-cCC-----------------hHHHHHHHHHhc--------------------------------C-------
Q 004808 278 DEADRLL-ELG-----------------FSAEIHELVRLC--------------------------------P------- 300 (729)
Q Consensus 278 DEah~ll-~~g-----------------f~~~i~~il~~~--------------------------------~------- 300 (729)
||+|.++ +.. +...+..+...+ +
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999843 100 000000000000 0
Q ss_pred ------------------------------------------------------------------------------cC
Q 004808 301 ------------------------------------------------------------------------------KR 302 (729)
Q Consensus 301 ------------------------------------------------------------------------------~~ 302 (729)
..
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 01
Q ss_pred ceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhcc--CCCeEEEEeCcH
Q 004808 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT--FTSKVIIFSGTK 380 (729)
Q Consensus 303 ~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~--~~~~vLIF~~s~ 380 (729)
..+.+||||++....++...+..+++.+.......+ ...+.++... ...+...+..++... .+.++||||+|+
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~t---~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFLT---AAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEeC---HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 256789999998888888888777766554333211 1222223222 234555666666443 256899999999
Q ss_pred HHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC---Ccc-----EEEEeCCCCChh
Q 004808 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLT 452 (729)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~---~v~-----~VI~~d~P~s~~ 452 (729)
..++.+...|...|+++..|||.+. +|...+..|..+...||||||+++||+||+ +|. +||+|++|.+..
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r 561 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHH
Confidence 9999999999999999999999865 555556666666678999999999999999 676 999999999999
Q ss_pred hHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 453 SYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 453 ~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
.|+||+|||||.|.+|.+++|++..|.-+
T Consensus 562 ~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 562 IDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99999999999999999999999877443
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-35 Score=342.00 Aligned_cols=320 Identities=20% Similarity=0.243 Sum_probs=236.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+. +..|+|++||++||.|.++++..+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~------G~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE------GKGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc------CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 466 79999999999999887 999999999999999999866543 446999999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhh-cCC--------
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG-------- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~g-------- 287 (729)
.++++++++|+.+...+.. ....+||+|+||++| .++|.... ...+..+.++||||||.|+ +..
T Consensus 146 lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred cCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 9999999999988332333 335689999999999 55555421 2357889999999999954 100
Q ss_pred -------hHHHHHHHHHhcCc-----------------------------------------------------------
Q 004808 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (729)
Q Consensus 288 -------f~~~i~~il~~~~~----------------------------------------------------------- 301 (729)
+...+..+...+..
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 01111111110000
Q ss_pred ----------------------------------------------------------CceEEEEecccchhHHHHHHHh
Q 004808 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 302 ----------------------------------------------------------~~q~il~SATl~~~v~~l~~~~ 323 (729)
...+.+||+|....-.++...+
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 0135566666654444443333
Q ss_pred cCCCeEEecCCCCCCCCCcee--EEEEeehhhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 004808 324 LTKPLRLSADPSAKRPSTLTE--EVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (729)
Q Consensus 324 l~~p~~i~~~~~~~~~~~l~~--~~~~~~~~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ 399 (729)
-. ++ +.+ +.. .|..... ..+.. ....+...+...+.. ..+.++||||+|...++.|...|...|+++..
T Consensus 385 ~l-~v-~~I-Pt~-kp~~r~d~~~~i~~---~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 385 NM-EV-VQI-PTN-RPIIRIDYPDKVFV---TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred CC-cE-EEC-CCC-CCcccccCCCeEEc---CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 22 21 122 222 1211111 11111 223455556555543 35789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC---CCcc-----EEEEeCCCCChhhHHHHhcccccCCCccEEE
Q 004808 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI---IGVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAV 471 (729)
Q Consensus 400 lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi---~~v~-----~VI~~d~P~s~~~yiQriGRagR~G~~G~~i 471 (729)
|||.+.+.++..+...+..| .|+|||++++||+|| ++|. +||+|++|.+...|+||+|||||.|.+|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999998888887777766 799999999999999 6998 9999999999999999999999999999999
Q ss_pred EEeccCcHHH
Q 004808 472 TFVTDNDRSL 481 (729)
Q Consensus 472 ~l~~~~d~~~ 481 (729)
+|++..|.-+
T Consensus 536 ~~is~eD~l~ 545 (790)
T PRK09200 536 FFISLEDDLL 545 (790)
T ss_pred EEEcchHHHH
Confidence 9999876443
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-35 Score=315.53 Aligned_cols=328 Identities=25% Similarity=0.329 Sum_probs=241.3
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
.-.++.||..+...++.+ |+|++.|||.|||+++++-+...+...+ + ++|+|+||+.|+.|.++.|.++...+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~----~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG----G-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC----C-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 346788999988888776 9999999999999998888887775432 2 799999999999999999999888777
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCc
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRR 303 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~ 303 (729)
-.++.++|........ .++....|+|+||+.+.+-|..+ .+++.++.+||+||||+-. ++.+..-...+++ ..+++
T Consensus 87 ~~i~~ltGev~p~~R~-~~w~~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~-~~k~~ 163 (542)
T COG1111 87 DEIAALTGEVRPEERE-ELWAKKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR-SAKNP 163 (542)
T ss_pred hheeeecCCCChHHHH-HHHhhCCEEEeccHHHHhHHhcC-ccChHHceEEEechhhhccCcchHHHHHHHHHH-hccCc
Confidence 8888999988876544 45667899999999999888775 6889999999999999976 4444444444443 34567
Q ss_pred eEEEEecccchhHHHH---HHHhcCCCeEEecCCCCCCCCC---------------------------------------
Q 004808 304 QTMLFSATLTEDVDEL---IKLSLTKPLRLSADPSAKRPST--------------------------------------- 341 (729)
Q Consensus 304 q~il~SATl~~~v~~l---~~~~l~~p~~i~~~~~~~~~~~--------------------------------------- 341 (729)
.++++|||+..+...+ +.......+.+.........+.
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7999999997443322 2211111111111000000000
Q ss_pred ---------------ce--eEE--EEeeh------------------------------------------h--------
Q 004808 342 ---------------LT--EEV--VRIRR------------------------------------------M-------- 352 (729)
Q Consensus 342 ---------------l~--~~~--~~~~~------------------------------------------~-------- 352 (729)
+. +.. ..... .
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 00 000 00000 0
Q ss_pred ---------------------hhhhHHHHHH----HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCcee-ec------
Q 004808 353 ---------------------REVNQEAVLL----SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-EL------ 400 (729)
Q Consensus 353 ---------------------~~~~k~~~l~----~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~-~l------ 400 (729)
....+...+. ..+....+.++|||++.+..++.+.++|...+..+. .+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 0000001111 112334467999999999999999999999988774 33
Q ss_pred --cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCc
Q 004808 401 --HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (729)
Q Consensus 401 --hg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d 478 (729)
..+|+|.++.++++.|++|.++|||||+++++|||||.|+.||+|++-.|+..++||.||||| ++.|.+++|++.++
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR-~r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc-CCCCeEEEEEecCc
Confidence 247999999999999999999999999999999999999999999999999999999999999 58999999999986
Q ss_pred HHHH
Q 004808 479 RSLL 482 (729)
Q Consensus 479 ~~~l 482 (729)
+...
T Consensus 483 rdea 486 (542)
T COG1111 483 RDEA 486 (542)
T ss_pred hHHH
Confidence 5433
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.6e-36 Score=337.95 Aligned_cols=304 Identities=15% Similarity=0.141 Sum_probs=218.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
...|+++|.++++.++.++++++++|||+|||++++. +...+... ..+++||||||++|+.||.+.+..++....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 3579999999999999999999999999999997543 22222222 123799999999999999999998876555
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCce
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q 304 (729)
..+..+.+|.... ...+|+|+||++|..... ..+..+++|||||||++... .+..++..++..++
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhccce
Confidence 5555566664322 347899999999976442 23678999999999999754 34566777777889
Q ss_pred EEEEecccchhHHHHHH-HhcCCCeEEecCCCC-----C-CCCCceeEEEEeeh------------------hhhhhHHH
Q 004808 305 TMLFSATLTEDVDELIK-LSLTKPLRLSADPSA-----K-RPSTLTEEVVRIRR------------------MREVNQEA 359 (729)
Q Consensus 305 ~il~SATl~~~v~~l~~-~~l~~p~~i~~~~~~-----~-~~~~l~~~~~~~~~------------------~~~~~k~~ 359 (729)
+++||||+......... ..+..|+...+.... . .+..+......+.. .....+..
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~ 331 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNK 331 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHH
Confidence 99999999753321111 111122222211000 0 00000000000000 00011222
Q ss_pred HHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc-CccccccCC
Q 004808 360 VLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLDI 436 (729)
Q Consensus 360 ~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-d~~~rGlDi 436 (729)
.+..++.. ..+.++||||.+.+.++.|...|...++++..+||+|++.+|..+++.|+.|...||||| +++++|+|+
T Consensus 332 ~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di 411 (501)
T PHA02558 332 WIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI 411 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc
Confidence 22222221 235688999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred CCccEEEEeCCCCChhhHHHHhcccccCCCcc
Q 004808 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREG 468 (729)
Q Consensus 437 ~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G 468 (729)
|++++||++.+|.+...|+||+||++|.+..+
T Consensus 412 p~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 412 KNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999977544
No 65
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.5e-36 Score=309.00 Aligned_cols=334 Identities=22% Similarity=0.333 Sum_probs=254.2
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH
Q 004808 135 PLLRACEA-LGYSKP-TPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (729)
Q Consensus 135 ~l~~~l~~-~g~~~p-t~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q 211 (729)
.+..+|+. +|+..+ +++|..++..+..+ +||.|++|||+||+++|.||.|-+ ..-+||+.|..+|...
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHHH
Confidence 45555554 577665 79999999999886 699999999999999999999855 2258999999999876
Q ss_pred HHHHHHHHhhccCceEEEEecCCChHHHHHHH------hcCCCeEEECchHHH-----HHHhccCccCCCCeeEEEEeCc
Q 004808 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL------RSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 212 ~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l------~~~~dIvI~TP~~L~-----~~l~~~~~~~l~~i~~lVvDEa 280 (729)
..+-+..| .+++..+..-.+..+....+ +....|++.||+.-. .+|.. ..+-.-+.++|||||
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechh
Confidence 66666654 45555566666555443332 344679999998742 22221 122356789999999
Q ss_pred chhhcCC--hHHHHHHHHH--hcCcCceEEEEecccchhHHHHH--HHhcCCCeEEecCCCCCCCCCceeEEEEee-hhh
Q 004808 281 DRLLELG--FSAEIHELVR--LCPKRRQTMLFSATLTEDVDELI--KLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR 353 (729)
Q Consensus 281 h~ll~~g--f~~~i~~il~--~~~~~~q~il~SATl~~~v~~l~--~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~-~~~ 353 (729)
|++..|| |++.+..+-. ..-....-+.+|||.++.+.+.+ .+.+.+|+.+...+..... + |+.+. ...
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N--L---FYD~~~K~~ 225 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN--L---FYDNHMKSF 225 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh--h---hHHHHHHHH
Confidence 9999998 6666665533 23345668999999999998865 5667888876654433211 1 11100 001
Q ss_pred hhhHHHHHHHHhh-------------ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 004808 354 EVNQEAVLLSLCS-------------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (729)
Q Consensus 354 ~~~k~~~l~~l~~-------------~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 420 (729)
..+....|..++. +...+-.||||.|++.+++++..|...|+++..+|.++...+|..+.+.|.+|+
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 1122233333332 223466899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 421 ~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
+.|++||..+++|+|-|+|++|||+++|.|...|.|-.||+||.|.+.+|.+|++.+|+..+..+...
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888877654
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.2e-34 Score=326.59 Aligned_cols=321 Identities=20% Similarity=0.221 Sum_probs=237.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .|+++|..+.+.++.|+ |+.++||+|||++|++|++-..+. +..|+|++||++||.|.++++..+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------G~~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 455 58999999999988886 999999999999999999644332 224999999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhhc-C--------C
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLLE-L--------G 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll~-~--------g 287 (729)
.++++++++|+.+....... ..++|+|+||++| .++|+... .+.+..+.++||||+|.|+- . |
T Consensus 124 LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 99999999999886554433 3589999999999 99998652 34678999999999999642 0 0
Q ss_pred -------hHHHHHHHHHhcC--------------------------------------------------------c---
Q 004808 288 -------FSAEIHELVRLCP--------------------------------------------------------K--- 301 (729)
Q Consensus 288 -------f~~~i~~il~~~~--------------------------------------------------------~--- 301 (729)
.......+.+.+. +
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0000000000000 0
Q ss_pred ----------------------------------------------------------CceEEEEecccchhHHHHHHHh
Q 004808 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 302 ----------------------------------------------------------~~q~il~SATl~~~v~~l~~~~ 323 (729)
...+.+||+|...+..++...+
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 1245566667665554444433
Q ss_pred cCCCeEEecCCCCCCCCCceeE-EEEeehhhhhhHHHHHHHHh--hccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeec
Q 004808 324 LTKPLRLSADPSAKRPSTLTEE-VVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (729)
Q Consensus 324 l~~p~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~k~~~l~~l~--~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~l 400 (729)
-...+. + +.. .|...... -..+.. ...+...+...+ ....+.++||||+|...++.+...|...|+++..|
T Consensus 362 ~l~vv~--I-Ptn-kp~~R~d~~d~i~~t--~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 362 NLEVVV--V-PTN-RPVIRKDLSDLVYKT--EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred CCCEEE--e-CCC-CCeeeeeCCCeEEcC--HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 222111 1 111 11111100 011111 223333343333 23357899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC-------ccEEEEeCCCCChhhHHHHhcccccCCCccEEEEE
Q 004808 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG-------VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (729)
Q Consensus 401 hg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~-------v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l 473 (729)
|+. +.+|...+..|..+...|+|||++|+||+||+. .-|||+|++|.|...|.|++|||||.|.+|.+++|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999998 55999999999999999999999999999999999
Q ss_pred eccCcHHHH
Q 004808 474 VTDNDRSLL 482 (729)
Q Consensus 474 ~~~~d~~~l 482 (729)
++..|.-+.
T Consensus 514 ls~eD~l~~ 522 (745)
T TIGR00963 514 LSLEDNLMR 522 (745)
T ss_pred EeccHHHHH
Confidence 999875543
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.3e-35 Score=324.46 Aligned_cols=302 Identities=22% Similarity=0.201 Sum_probs=208.6
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChH------
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK------ 237 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~------ 237 (729)
+++++||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..+.. ..+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~----~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ----KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC----CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccC
Confidence 689999999999999999999886432 245799999999999999999988643 2344455443210
Q ss_pred ------HHHHHH------hcCCCeEEECchHHHHHHhccCc---cCC--CCeeEEEEeCcchhhcCChHHHHHHHHHhcC
Q 004808 238 ------MQETAL------RSMPDIVVATPGRMIDHLRNSMS---VDL--DDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (729)
Q Consensus 238 ------~~~~~l------~~~~dIvI~TP~~L~~~l~~~~~---~~l--~~i~~lVvDEah~ll~~gf~~~i~~il~~~~ 300 (729)
...... ....+|+|+||+.++..+..... +.+ -..++|||||||.+..+++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 000001 12367999999999887765211 111 123789999999998765443 555555444
Q ss_pred -cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhc-cCCCeEEEEeC
Q 004808 301 -KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSG 378 (729)
Q Consensus 301 -~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~-~~~~~vLIF~~ 378 (729)
...|+++||||++..+..++......+.......... .....+.+..... ....+...+..++.. ..+.++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIES-DKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeecc-ccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 4689999999999777766655433221111110000 0001122111111 111223333333332 24679999999
Q ss_pred cHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHH----HHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChh
Q 004808 379 TKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLE----ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (729)
Q Consensus 379 s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~----~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~ 452 (729)
++..++.+...|...+. .+..+||++++.+|.. +++.|++|...|||||+++++||||+ +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999987765 5999999999999976 48999999999999999999999995 8999999877 78
Q ss_pred hHHHHhcccccCCCc----cEEEEEeccCc
Q 004808 453 SYVHRVGRTARAGRE----GYAVTFVTDND 478 (729)
Q Consensus 453 ~yiQriGRagR~G~~----G~~i~l~~~~d 478 (729)
+|+||+||+||.|+. |.+++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998854 36777765443
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.8e-34 Score=329.39 Aligned_cols=320 Identities=19% Similarity=0.182 Sum_probs=226.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+++|...+..+..| .|+.++||+|||++|++|++.+.+. +..|+||+|+++||.|+++++..++.+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~------g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT------GKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc------CCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 454 5666665555555554 7999999999999999998876653 234999999999999999999999999
Q ss_pred cCceEEEEecCCC---hHHHHHHHhcCCCeEEECchHH-HHHHhcc-----CccCCCCeeEEEEeCcchhhc-CC-----
Q 004808 223 TDIRCCLVVGGLS---TKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLE-LG----- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~---~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~ll~-~g----- 287 (729)
.|+.+.+++++.. ..........+++|+|+||++| .++|... ....+..+.++||||||.|+- ..
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 9999998877622 2222333446799999999999 5666432 234578899999999999642 00
Q ss_pred ----------hHHHHHHHHHhcCc--------------------------------------------------------
Q 004808 288 ----------FSAEIHELVRLCPK-------------------------------------------------------- 301 (729)
Q Consensus 288 ----------f~~~i~~il~~~~~-------------------------------------------------------- 301 (729)
+...+..+...+..
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 00111111111000
Q ss_pred -------------------------------------------------------------CceEEEEecccchhHHHHH
Q 004808 302 -------------------------------------------------------------RRQTMLFSATLTEDVDELI 320 (729)
Q Consensus 302 -------------------------------------------------------------~~q~il~SATl~~~v~~l~ 320 (729)
..++.+||+|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 1245666777655555554
Q ss_pred HHhcCCCeEEecCCCCCCCCCceeE--EEEeehhhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCc
Q 004808 321 KLSLTKPLRLSADPSAKRPSTLTEE--VVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALK 396 (729)
Q Consensus 321 ~~~l~~p~~i~~~~~~~~~~~l~~~--~~~~~~~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~ 396 (729)
..+ +-++ +.+ |.. .|...... .+.. ....+...+...+.. ..+.++||||+|+..++.+...|...|++
T Consensus 378 ~iY-~l~v-~~I-Pt~-kp~~r~d~~d~i~~---~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~ 450 (762)
T TIGR03714 378 ETY-SLSV-VKI-PTN-KPIIRIDYPDKIYA---TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIP 450 (762)
T ss_pred HHh-CCCE-EEc-CCC-CCeeeeeCCCeEEE---CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCC
Confidence 333 2211 111 111 11111111 1111 123455555555543 45679999999999999999999999999
Q ss_pred eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC---------CccEEEEeCCCCChhhHHHHhcccccCCCc
Q 004808 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---------GVQTVINYACPRDLTSYVHRVGRTARAGRE 467 (729)
Q Consensus 397 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~---------~v~~VI~~d~P~s~~~yiQriGRagR~G~~ 467 (729)
+..|||.+.+.++..+...|+.| .|+|||++++||+||+ ++.+||+|++|..... +||+|||||.|.+
T Consensus 451 ~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~ 527 (762)
T TIGR03714 451 HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDP 527 (762)
T ss_pred EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCc
Confidence 99999999999888777777666 7999999999999999 9999999999988766 9999999999999
Q ss_pred cEEEEEeccCcHHH
Q 004808 468 GYAVTFVTDNDRSL 481 (729)
Q Consensus 468 G~~i~l~~~~d~~~ 481 (729)
|.+++|++..|.-+
T Consensus 528 G~s~~~is~eD~l~ 541 (762)
T TIGR03714 528 GSSQFFVSLEDDLI 541 (762)
T ss_pred eeEEEEEccchhhh
Confidence 99999999876544
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.9e-34 Score=339.41 Aligned_cols=326 Identities=25% Similarity=0.311 Sum_probs=239.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
.-.|+++|.+++..++.+ |+|+++|||+|||++++++++..+. . ++.++|||+||++|+.|+.+.+..+....+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-K----KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-h----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 346899999999998887 9999999999999999888887763 1 345799999999999999999998765555
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCce
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q 304 (729)
..+..++|+.+... ...+....+|+|+||+.|...+... .+.+..+++|||||||++........+........+..+
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 67888888877654 3445667899999999998877653 567889999999999998754333444444444455678
Q ss_pred EEEEecccchhHH---HHHHHhcCCCeEEecCCCCC-----CCCCceeEEE-----------------------------
Q 004808 305 TMLFSATLTEDVD---ELIKLSLTKPLRLSADPSAK-----RPSTLTEEVV----------------------------- 347 (729)
Q Consensus 305 ~il~SATl~~~v~---~l~~~~l~~p~~i~~~~~~~-----~~~~l~~~~~----------------------------- 347 (729)
+++||||+..... .++.......+.+....... .+..+....+
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999854432 22222211111110000000 0000000000
Q ss_pred E--ee--------------------h------------------------------------------------------
Q 004808 348 R--IR--------------------R------------------------------------------------------ 351 (729)
Q Consensus 348 ~--~~--------------------~------------------------------------------------------ 351 (729)
. .. .
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 0 00 0
Q ss_pred ------------------hhhhhHHHHHHHHhh----ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCC------
Q 004808 352 ------------------MREVNQEAVLLSLCS----KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN------ 403 (729)
Q Consensus 352 ------------------~~~~~k~~~l~~l~~----~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~------ 403 (729)
.....+...|..++. ...+.++||||++...+..|..+|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 000011112222222 2456899999999999999999999999999999886
Q ss_pred --CCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 404 --LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 404 --~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
|++.+|..++..|++|..+|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| +|.+++|+...+.
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999976 5999999987653
No 70
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=307.11 Aligned_cols=338 Identities=23% Similarity=0.285 Sum_probs=271.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
...++|.+++.+.+.|...|++.+.|+|..++.. ++.|.|.++.++|+||||++.-++-+.+++... .+.|+|+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g-----~KmlfLv 268 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG-----KKMLFLV 268 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC-----CeEEEEe
Confidence 4467899999999999999999999999999966 778999999999999999999999998887643 3689999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH----HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~----~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
|..+||+|-++.|..-....++.+.+-+|......... .....+||||+|++.+--+|+. ...+.++..|||||
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--GKDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--CCcccccceEEeee
Confidence 99999999999998877778888888888655443321 1234579999999998666665 36789999999999
Q ss_pred cchhhcCChHHHH---HHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh
Q 004808 280 ADRLLELGFSAEI---HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 280 ah~ll~~gf~~~i---~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (729)
+|.+-+......+ ..=++.+-+..|.|.+|||+.+. .+++...-.+++.+. .+|..+..+.+.... ...
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~--e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARN--ESE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecC--chH
Confidence 9998764433333 33345555689999999999754 445555544554443 366677777666553 335
Q ss_pred HHHHHHHHhh--------ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 004808 357 QEAVLLSLCS--------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (729)
Q Consensus 357 k~~~l~~l~~--------~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 428 (729)
+..++..+++ ..+.+.+|||++|+..|+.|+.+|...|+.+.++|++|+..+|..+...|.++.+.++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 5555555553 44578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEE---EeCCCC-ChhhHHHHhcccccCCC--ccEEEEEeccC
Q 004808 429 VAARGLDIIGVQTVI---NYACPR-DLTSYVHRVGRTARAGR--EGYAVTFVTDN 477 (729)
Q Consensus 429 ~~~rGlDi~~v~~VI---~~d~P~-s~~~yiQriGRagR~G~--~G~~i~l~~~~ 477 (729)
+++.|+|+|.-.+|+ -++..| ++..|.|+.||+||-+- .|.+|+++.+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999766543 244445 89999999999999663 59999998764
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=318.85 Aligned_cols=333 Identities=24% Similarity=0.308 Sum_probs=238.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
.-.++.||.+.+..+| |+|+|+++|||+|||.+++..+++++-+.++ .+||+++||+.|+.|....+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~----~KiVF~aP~~pLv~QQ~a~~~~~~~~-- 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK----GKVVFLAPTRPLVNQQIACFSIYLIP-- 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc----ceEEEeeCCchHHHHHHHHHhhccCc--
Confidence 3468999999999999 9999999999999999999999999877765 58999999999999988666665432
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCc
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRR 303 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~ 303 (729)
..+....||.........+....+|+|+||..|.+-|.+.....|+.|.++||||||+-. +..+..-+..++..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 555666676555544556777889999999999999887644457999999999999977 5556666656666655666
Q ss_pred eEEEEecccchhHHHHHHHhcC---C----------------------CeEEec--------------------------
Q 004808 304 QTMLFSATLTEDVDELIKLSLT---K----------------------PLRLSA-------------------------- 332 (729)
Q Consensus 304 q~il~SATl~~~v~~l~~~~l~---~----------------------p~~i~~-------------------------- 332 (729)
|+|++|||+..+.........+ . |+.+..
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9999999997543332111100 0 000000
Q ss_pred ---CCC--C---------CCCCCc---------------------eeEEEEeeh--------------h-----------
Q 004808 333 ---DPS--A---------KRPSTL---------------------TEEVVRIRR--------------M----------- 352 (729)
Q Consensus 333 ---~~~--~---------~~~~~l---------------------~~~~~~~~~--------------~----------- 352 (729)
... . ....+. ....+++-. .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 000 0 000000 000000000 0
Q ss_pred -------------------hhhhHHH----HHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh---cCCceeeccC----
Q 004808 353 -------------------REVNQEA----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHG---- 402 (729)
Q Consensus 353 -------------------~~~~k~~----~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~---~~~~~~~lhg---- 402 (729)
....+.. ++..........++||||.++..+..|..+|.. .++....+.|
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 0000011 111112334467999999999999999999972 2344444433
Q ss_pred ----CCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCc
Q 004808 403 ----NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (729)
Q Consensus 403 ----~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d 478 (729)
+|++.++.++++.|++|.++|||||.++++||||+.|+.||.||.-.|+...+||.|| ||+ +.|.|+++++..+
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 7999999999999999999999999999999999999999999999999999999999 996 5899999998655
Q ss_pred HHHHHHHH
Q 004808 479 RSLLKAIA 486 (729)
Q Consensus 479 ~~~l~~i~ 486 (729)
...++...
T Consensus 531 ~~~~E~~~ 538 (746)
T KOG0354|consen 531 VIEFERNN 538 (746)
T ss_pred HHHHHHHH
Confidence 55554443
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-33 Score=330.21 Aligned_cols=335 Identities=22% Similarity=0.269 Sum_probs=262.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHH
Q 004808 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (729)
Q Consensus 135 ~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~ 214 (729)
...-....+|+..++|-|.++|..++.|+|+++.+|||.||+++|.||++- .++.+|||.|..+|+.-+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------~~gitvVISPL~SLm~DQ-- 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------LGGVTVVISPLISLMQDQ-- 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------cCCceEEeccHHHHHHHH--
Confidence 444455678999999999999999999999999999999999999999972 233689999999997543
Q ss_pred HHHHHhhccCceEEEEecCCChHHHHH---HHhc---CCCeEEECchHHHHHHhcc-CccCCCC---eeEEEEeCcchhh
Q 004808 215 MIEKIAQFTDIRCCLVVGGLSTKMQET---ALRS---MPDIVVATPGRMIDHLRNS-MSVDLDD---LAVLILDEADRLL 284 (729)
Q Consensus 215 ~~~~l~~~~~i~v~~~~gg~~~~~~~~---~l~~---~~dIvI~TP~~L~~~l~~~-~~~~l~~---i~~lVvDEah~ll 284 (729)
+..| ...+|....+.++.....+.. .+.. ..+|++.||+.+...-.-. ....|.. +.++||||||++.
T Consensus 321 -v~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 321 -VTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred -HHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 3333 235889999999888753332 2333 4689999999875432111 1223444 8999999999999
Q ss_pred cCC--hHHHHHHH---HHhcCcCceEEEEecccchhHHHHHHHhc--CCCeEEecCCCCCCCCCceeEEEEeehhhhhhH
Q 004808 285 ELG--FSAEIHEL---VRLCPKRRQTMLFSATLTEDVDELIKLSL--TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (729)
Q Consensus 285 ~~g--f~~~i~~i---l~~~~~~~q~il~SATl~~~v~~l~~~~l--~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k 357 (729)
.|| |++.+..+ ....+ .+.+|.+|||.+..+..-+-..+ .+|..+. ... ...++...+..-.. ....
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sf-nR~NL~yeV~~k~~--~~~~ 472 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSF-NRPNLKYEVSPKTD--KDAL 472 (941)
T ss_pred hhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccC-CCCCceEEEEeccC--ccch
Confidence 998 66666554 33333 47899999999998887765444 4444322 222 33345444332111 1222
Q ss_pred HHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC
Q 004808 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (729)
Q Consensus 358 ~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~ 437 (729)
...+..+-...+...+||||.++.+|+.+...|...++++..||++|+..+|..+...|..++++|++||=++++|||.|
T Consensus 473 ~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 473 LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 33344444566678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 438 ~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
+|+.||||.+|.+.+.|+|-+|||||.|....|++|+...|...++.+...
T Consensus 553 DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 553 DVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred ceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998888887654
No 73
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2e-33 Score=335.06 Aligned_cols=305 Identities=18% Similarity=0.211 Sum_probs=210.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH----HHHHHHHHHHHHHhhccCc
Q 004808 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR----ELAVQVHSMIEKIAQFTDI 225 (729)
Q Consensus 150 ~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr----eLa~Q~~~~~~~l~~~~~i 225 (729)
.+-.+++..+..++.+|++|+||||||++ +|.+..-.... ....+++..|.| +||.|+.+.+..- .+-
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g---~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG~ 148 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRG---VKGLIGHTQPRRLAARTVANRIAEELETE---LGG 148 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCC---CCCceeeCCCcHHHHHHHHHHHHHHHhhh---hcc
Confidence 34455666666777788999999999995 67443222211 123577778865 6777777766531 122
Q ss_pred eEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc-hhhcCChHHH-HHHHHHhcCcCc
Q 004808 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRR 303 (729)
Q Consensus 226 ~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah-~ll~~gf~~~-i~~il~~~~~~~ 303 (729)
.+++-+...+ ....+++|+|+|||+|++++... ..|+.+++||||||| ++++.+|... +..++.. .+..
T Consensus 149 ~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 149 CVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred eeceeecCcc------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 2222221111 12356899999999999999863 459999999999999 6889888753 3333322 2468
Q ss_pred eEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhh---hhHHHHHHHH---hhccCCCeEEEEe
Q 004808 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE---VNQEAVLLSL---CSKTFTSKVIIFS 377 (729)
Q Consensus 304 q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~---~~k~~~l~~l---~~~~~~~~vLIF~ 377 (729)
|+|+||||++.+ .+...+...|+ +.+.... ..+...+........ ......+... +.....+.+||||
T Consensus 220 KvILmSATid~e--~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 220 KVIITSATIDPE--RFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred eEEEeeCCCCHH--HHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 999999999753 45555555553 4443221 123333332211110 1111111111 1233467899999
Q ss_pred CcHHHHHHHHHHHhhcCCc---eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeC--------
Q 004808 378 GTKQAAHRLKILFGLAALK---AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA-------- 446 (729)
Q Consensus 378 ~s~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d-------- 446 (729)
++..+++.++..|...++. +..|||+|++.+|..++.. .|..+||||||++++|||||+|++||+++
T Consensus 294 pg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 9999999999999887664 6789999999999999886 57899999999999999999999999986
Q ss_pred -------CCC---ChhhHHHHhcccccCCCccEEEEEeccCcHH
Q 004808 447 -------CPR---DLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (729)
Q Consensus 447 -------~P~---s~~~yiQriGRagR~G~~G~~i~l~~~~d~~ 480 (729)
+|. |..+|.||+|||||. ++|.||.|+++.+..
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 343 457899999999998 699999999987643
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7e-33 Score=300.98 Aligned_cols=293 Identities=18% Similarity=0.195 Sum_probs=201.9
Q ss_pred HHHHHHHHHhcCCC--EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc----cC
Q 004808 151 IQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF----TD 224 (729)
Q Consensus 151 iQ~~~i~~ll~g~d--vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~----~~ 224 (729)
+|.++++.+..+.+ +++++|||||||.+|++|++.. ..++++++|+++|+.|+++.+..+... .+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 59999999999875 7889999999999999998842 224899999999999999998887643 24
Q ss_pred ceEEEEecCCChHHH--------------------HHHHhcCCCeEEECchHHHHHHhccC---c----cCCCCeeEEEE
Q 004808 225 IRCCLVVGGLSTKMQ--------------------ETALRSMPDIVVATPGRMIDHLRNSM---S----VDLDDLAVLIL 277 (729)
Q Consensus 225 i~v~~~~gg~~~~~~--------------------~~~l~~~~dIvI~TP~~L~~~l~~~~---~----~~l~~i~~lVv 277 (729)
+.+..+.|....+.. .......++|+++||+.|..++.... . ..+.++++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 556666664221100 01112368899999999876654321 1 12578999999
Q ss_pred eCcchhhcCChH-----HHHHHHHHhcCcCceEEEEecccchhHHHHHHHh--cCCCeEEecCCCC----------CCC-
Q 004808 278 DEADRLLELGFS-----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSA----------KRP- 339 (729)
Q Consensus 278 DEah~ll~~gf~-----~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~--l~~p~~i~~~~~~----------~~~- 339 (729)
||+|.+..++.. .....++...+...+++++|||+++.+...+... +..|+........ ..+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 999998754421 1233334444445799999999999887777654 4444322211100 000
Q ss_pred -------CCceeEEEEeehhhhhhHHHHHHH----HhhccCCCeEEEEeCcHHHHHHHHHHHhhcC--CceeeccCCCCH
Q 004808 340 -------STLTEEVVRIRRMREVNQEAVLLS----LCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--LKAAELHGNLTQ 406 (729)
Q Consensus 340 -------~~l~~~~~~~~~~~~~~k~~~l~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~--~~~~~lhg~~~~ 406 (729)
+.+.+.+.. ...........+.. .+....+.++||||+|+..++.++..|...+ +.+..+||.+++
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 133333332 11111111111112 1222356799999999999999999998764 578899999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccc
Q 004808 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (729)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRag 462 (729)
.+|.++ ++..|||||++++|||||+.+ +|| ++ |.++..|+||+||+|
T Consensus 311 ~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 998754 378999999999999999987 666 55 889999999999997
No 75
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.8e-31 Score=313.25 Aligned_cols=337 Identities=16% Similarity=0.162 Sum_probs=218.9
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
.|.|+|..++..++.. ..+|++..+|.|||+.+.+.+ ..++..+. ..++|||||+ .|+.||...+... .+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil-~~l~~~g~---~~rvLIVvP~-sL~~QW~~El~~k---F~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMII-HQQLLTGR---AERVLILVPE-TLQHQWLVEMLRR---FN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHH-HHHHHcCC---CCcEEEEcCH-HHHHHHHHHHHHH---hC
Confidence 4899999998776653 479999999999999865444 44433322 2369999998 7999998888643 24
Q ss_pred ceEEEEecCCChHHHH--HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC--ChHHHHHHHHHhcC
Q 004808 225 IRCCLVVGGLSTKMQE--TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--GFSAEIHELVRLCP 300 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~--~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~--gf~~~i~~il~~~~ 300 (729)
+.+.++.++....... .......+++|+|++.|...-.....+.-..|++|||||||++-+. .-...+..+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 5555444332111000 0111246899999998865211101222347889999999998631 11122333333333
Q ss_pred cCceEEEEecccch-hHHH---H---------------H-------------HHhc-CCCeE------------------
Q 004808 301 KRRQTMLFSATLTE-DVDE---L---------------I-------------KLSL-TKPLR------------------ 329 (729)
Q Consensus 301 ~~~q~il~SATl~~-~v~~---l---------------~-------------~~~l-~~p~~------------------ 329 (729)
....++++|||+-. ...+ + . ...+ ..+..
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 45578999999852 1110 0 0 0000 00000
Q ss_pred -------------------------------EecCCC----CCCCCCceeEE-EEeeh----------------------
Q 004808 330 -------------------------------LSADPS----AKRPSTLTEEV-VRIRR---------------------- 351 (729)
Q Consensus 330 -------------------------------i~~~~~----~~~~~~l~~~~-~~~~~---------------------- 351 (729)
+.+... ..-|....+.+ +....
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~ 463 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQ 463 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHH
Confidence 000000 00000000000 00000
Q ss_pred -----------hhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHH-hhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 004808 352 -----------MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQ 419 (729)
Q Consensus 352 -----------~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 419 (729)
.....+...|..++....+.++||||+++..+..|...| ...|+.+..+||+|++.+|.++++.|+++
T Consensus 464 ~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~ 543 (956)
T PRK04914 464 IYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE 543 (956)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC
Confidence 000123334556666666789999999999999999999 46799999999999999999999999984
Q ss_pred --CceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhcc
Q 004808 420 --HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (729)
Q Consensus 420 --~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~ 491 (729)
...|||||+++++|+|++.+++|||||+||||..|+||+||+||.|+.|.+.+++..........|.+.+..
T Consensus 544 ~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 544 EDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 599999999999999999999999999999999999999999999999988777766555555556555443
No 76
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=314.26 Aligned_cols=334 Identities=20% Similarity=0.255 Sum_probs=243.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 131 NLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
.+...+...+...|+..+.|-|+.++.. ++.++|+|+|+|||||||+++.+.+++.+... +.++|+|||+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa 89 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALA 89 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHH
Confidence 4677888888888998888877777755 45569999999999999999999999998765 34699999999999
Q ss_pred HHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChH
Q 004808 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (729)
Q Consensus 210 ~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (729)
.+.++.+.+| ...|++|...+|+......+ -.+++|||+||+.+-..+++... .+..+++|||||+|.+.+....
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 9999999955 44699999999998765422 35689999999999888887654 5789999999999998876444
Q ss_pred HHHHHHHHh---cCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCC-CCCCCCceeEEEEeehhh---hhhHHHHHH
Q 004808 290 AEIHELVRL---CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS-AKRPSTLTEEVVRIRRMR---EVNQEAVLL 362 (729)
Q Consensus 290 ~~i~~il~~---~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~-~~~~~~l~~~~~~~~~~~---~~~k~~~l~ 362 (729)
..+..++.. .....|++.+|||+++. .+++...-.+++.....+. ..++....+.+....... .........
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 444444433 33448999999999853 4444333333321111111 112222333333322111 011111222
Q ss_pred HHh--hccCCCeEEEEeCcHHHHHHHHHHHhh-------------------------------------cCCceeeccCC
Q 004808 363 SLC--SKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGN 403 (729)
Q Consensus 363 ~l~--~~~~~~~vLIF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~lhg~ 403 (729)
.++ ....++.+||||+|+..+...+..+.. .-..++.+|++
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 221 233478999999999988888777652 01236788999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE----EeC-----CCCChhhHHHHhcccccCCC--ccEEEE
Q 004808 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYA-----CPRDLTSYVHRVGRTARAGR--EGYAVT 472 (729)
Q Consensus 404 ~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI----~~d-----~P~s~~~yiQriGRagR~G~--~G~~i~ 472 (729)
|+..+|.-+.+.|+.|.++||+||..++.|+|+|.-..|| .|+ .+-++.+|+|+.|||||.|- .|.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999877766 566 45578999999999999774 477777
Q ss_pred Eec
Q 004808 473 FVT 475 (729)
Q Consensus 473 l~~ 475 (729)
+..
T Consensus 404 ~~~ 406 (766)
T COG1204 404 LAT 406 (766)
T ss_pred Eec
Confidence 773
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=314.23 Aligned_cols=338 Identities=24% Similarity=0.299 Sum_probs=261.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q 211 (729)
....+..++...|+..|+++|.+++..+.+|+|+||+.+||||||.+|++|++++++..+.. ++|+|.||++||..
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a----~AL~lYPtnALa~D 130 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA----RALLLYPTNALAND 130 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc----cEEEEechhhhHhh
Confidence 34456888888999999999999999999999999999999999999999999999987654 79999999999998
Q ss_pred HHHHHHHHhhccC--ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHh-ccC--ccCCCCeeEEEEeCcchhhc-
Q 004808 212 VHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR-NSM--SVDLDDLAVLILDEADRLLE- 285 (729)
Q Consensus 212 ~~~~~~~l~~~~~--i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~-~~~--~~~l~~i~~lVvDEah~ll~- 285 (729)
+.+.+.++....+ +.+..+.|............+.|+||+|||.+|..++. +.. .+.+.++++|||||+|..--
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 8999998887765 88888889888887777788999999999999977443 322 23478899999999997542
Q ss_pred CC-----hHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhh-----
Q 004808 286 LG-----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV----- 355 (729)
Q Consensus 286 ~g-----f~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~----- 355 (729)
.| ....+..+++..+...|+|+.|||+...- ++...+........+. ....+......+...++....
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcc
Confidence 11 23344455555667899999999997544 4444555554444332 222333444443333311100
Q ss_pred -hHHHHHHHHhh--ccCCCeEEEEeCcHHHHHHHH----HHHhhcC----CceeeccCCCCHHHHHHHHHHHhcCCceEE
Q 004808 356 -NQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLK----ILFGLAA----LKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (729)
Q Consensus 356 -~k~~~l~~l~~--~~~~~~vLIF~~s~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 424 (729)
.....+..+.. -..+-++|+|+.++..++.+. ..+...+ ..+..++++|...+|.++...|+.|+..++
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 11111222222 123678999999999999985 3343444 568889999999999999999999999999
Q ss_pred EEcCccccccCCCCccEEEEeCCCC-ChhhHHHHhcccccCCCccEEEEEec
Q 004808 425 IATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (729)
Q Consensus 425 VaTd~~~rGlDi~~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~i~l~~ 475 (729)
++|+++.-|+||.+++.||++..|. +..++.||.||+||.++.+..++++.
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999 89999999999999987777776666
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-31 Score=305.30 Aligned_cols=311 Identities=17% Similarity=0.203 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHhc-C--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 147 KPTPIQAACIPLALT-G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~-g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
.|+|+|.+++..++. | +..++++|||+|||++.+ .++..+ ..++|||||+..|+.||.+.+..++...
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTV--------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 589999999998884 3 478999999999999864 444443 1248999999999999999999886655
Q ss_pred CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc-------CccCCCCeeEEEEeCcchhhcCChHHHHHHHH
Q 004808 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~-------~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il 296 (729)
...+..++|+.... ......|+|+|+..+....... ..+.-..|.+||+||||++.... +..++
T Consensus 326 ~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVL 396 (732)
T ss_pred CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHH
Confidence 66677777764321 1234689999999875432211 01223578899999999986433 33344
Q ss_pred HhcCcCceEEEEecccchhHHHH--HHHhcCCCeEEecCC------CCCCCCCceeEEEEeeh-----------------
Q 004808 297 RLCPKRRQTMLFSATLTEDVDEL--IKLSLTKPLRLSADP------SAKRPSTLTEEVVRIRR----------------- 351 (729)
Q Consensus 297 ~~~~~~~q~il~SATl~~~v~~l--~~~~l~~p~~i~~~~------~~~~~~~l~~~~~~~~~----------------- 351 (729)
..+. ....+++|||+..+-... +. ++..|..+.... ..-.+.......+....
T Consensus 397 ~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 397 TIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 4443 334699999996332111 11 122233332211 00011111111111100
Q ss_pred -hhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEEEc
Q 004808 352 -MREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIAT 427 (729)
Q Consensus 352 -~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLVaT 427 (729)
.....+...+..++.. ..+.++||||.+...+..+...|. +..|||.+++.+|..+++.|+.| .+++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 0011222233333332 257899999999999888888773 46689999999999999999975 78999999
Q ss_pred CccccccCCCCccEEEEeCCCC-ChhhHHHHhcccccCCCccEE-------EEEeccCcHHHH
Q 004808 428 DVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYA-------VTFVTDNDRSLL 482 (729)
Q Consensus 428 d~~~rGlDi~~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~-------i~l~~~~d~~~l 482 (729)
+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |.|++..+..+.
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 9999999999999999999985 999999999999998766554 888988776543
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=5.6e-31 Score=315.47 Aligned_cols=312 Identities=19% Similarity=0.215 Sum_probs=215.3
Q ss_pred CCCCCcHHH---HHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 144 GYSKPTPIQ---AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 144 g~~~pt~iQ---~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
.|...-|+. .+++..+..++.+|++|+||||||++ +|.+..-... ...++++++.|.|..|..++..+....
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~---~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR---GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC---CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 444444444 34556666677888999999999996 5544322111 123478889999988887776665432
Q ss_pred hccCceEEEEecCC-ChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc-hhhcCChHHH-HHHHHH
Q 004808 221 QFTDIRCCLVVGGL-STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVR 297 (729)
Q Consensus 221 ~~~~i~v~~~~gg~-~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah-~ll~~gf~~~-i~~il~ 297 (729)
+..++..+|.. .... .....+.|+|+|||+|+..+... ..|..+++||||||| ++++.+|.-. +..++.
T Consensus 136 ---g~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred ---CCCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 34444444421 1111 12356789999999999998763 458999999999999 5889887764 455554
Q ss_pred hcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh---hhhHHH----HHHHHhhccCC
Q 004808 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR---EVNQEA----VLLSLCSKTFT 370 (729)
Q Consensus 298 ~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~---~~~k~~----~l~~l~~~~~~ 370 (729)
.. +..|+|+||||+.. ..+...+...|+ +.+.... .| +...+....... ...... .+..++. ...
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~-~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~ 279 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT-YP--VEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGP 279 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc-cc--ceeEEecccccccchhhhHHHHHHHHHHHHHh-hCC
Confidence 43 47899999999974 445555544454 3333221 12 222222111100 001111 2222232 245
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhcC---CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC
Q 004808 371 SKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447 (729)
Q Consensus 371 ~~vLIF~~s~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~ 447 (729)
+.+|||+++..+++.+...|...+ +.+..|||.|++.+|..++..+ +..+|||||+++++|||||+|++||++++
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 789999999999999999998764 4588999999999999987654 34789999999999999999999999985
Q ss_pred CC------------------ChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 448 PR------------------DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 448 P~------------------s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
+. |..+|+||+||+||.| +|.||.|+++.+.
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 43 5579999999999997 9999999997654
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.98 E-value=5.3e-31 Score=267.63 Aligned_cols=341 Identities=18% Similarity=0.234 Sum_probs=258.0
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 129 ELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 129 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
+++++......|+. +....++|+|.++|+..+.|.|+++..|||.||+++|.||+|.. .+-+||+||...
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~plis 145 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICPLIS 145 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeechhHH
Confidence 34556555555543 56778999999999999999999999999999999999999854 235899999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCChHHHH---HHH-h--cCCCeEEECchHHHH------HHhccCccCCCCeeEE
Q 004808 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TAL-R--SMPDIVVATPGRMID------HLRNSMSVDLDDLAVL 275 (729)
Q Consensus 208 La~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~---~~l-~--~~~dIvI~TP~~L~~------~l~~~~~~~l~~i~~l 275 (729)
|+....-+++.| |+....+....+...-. ..+ . ....+++.||+.+.. .|.. .+....+.+|
T Consensus 146 lmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~i 219 (695)
T KOG0353|consen 146 LMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEEE
Confidence 987655556654 66666666555433211 111 1 235789999998743 2222 4456788999
Q ss_pred EEeCcchhhcCC--hHHHH--HHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeeh
Q 004808 276 ILDEADRLLELG--FSAEI--HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351 (729)
Q Consensus 276 VvDEah~ll~~g--f~~~i--~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~ 351 (729)
.|||+|+...|| |+..+ ..++...-+...+|+++||.+..+.......+.-.-.+.+.....+| ++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~-nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP-NLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC-CceeEeeeCCC
Confidence 999999999998 45444 34566666778899999999988877766554433333333333333 45544443332
Q ss_pred hhhhhHHHHHHHHhhcc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 004808 352 MREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (729)
Q Consensus 352 ~~~~~k~~~l~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~ 430 (729)
...+-..-+..++... .+...||||-++.+++.+...|...|+.+..+|.+|.+.++.-+-+.|..|++.|+|+|-++
T Consensus 299 -n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 299 -NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred -ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 2333333344444433 35678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHH-------------------------------------------HhcccccCCCc
Q 004808 431 ARGLDIIGVQTVINYACPRDLTSYVH-------------------------------------------RVGRTARAGRE 467 (729)
Q Consensus 431 ~rGlDi~~v~~VI~~d~P~s~~~yiQ-------------------------------------------riGRagR~G~~ 467 (729)
++|||-|+|++||+..+|.+.+.|.| ..||+||.|.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 78999999999
Q ss_pred cEEEEEeccCcHHHHHHHH
Q 004808 468 GYAVTFVTDNDRSLLKAIA 486 (729)
Q Consensus 468 G~~i~l~~~~d~~~l~~i~ 486 (729)
..||+|+.-.|......+.
T Consensus 458 a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSMV 476 (695)
T ss_pred ccEEEEechHHHHhHHHHH
Confidence 9999999887765555443
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=3.8e-29 Score=291.50 Aligned_cols=320 Identities=19% Similarity=0.222 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHHhcC---CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 147 KPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g---~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
.||+.|+++++.++.+ +++++.|+||||||.+|+.++...+.. +.++|||+||++|+.|+++.+... .
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~---f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRAR---F 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHH---h
Confidence 5899999999999984 789999999999999998777666532 346999999999999999998864 3
Q ss_pred CceEEEEecCCChHHHHH----HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCCh------HHHHH
Q 004808 224 DIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF------SAEIH 293 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~----~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf------~~~i~ 293 (729)
+..+..++|+.+...... ...+.++|||+|++.+. ..+.++.+|||||+|...-++. ...+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v- 285 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL- 285 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH-
Confidence 678899999987654432 23356899999998763 3467889999999998653321 1222
Q ss_pred HHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehh-hh----hhHHHHHHHHhhcc
Q 004808 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-RE----VNQEAVLLSLCSKT 368 (729)
Q Consensus 294 ~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~-~~----~~k~~~l~~l~~~~ 368 (729)
.++.......|+|++|||++.+....+... ....+...............++..... .. ......+..+....
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 234445567899999999886655444321 111111111110000001111111100 00 00011111111111
Q ss_pred -CCCeEEEEeCcH------------------------------------------------------------HHHHHHH
Q 004808 369 -FTSKVIIFSGTK------------------------------------------------------------QAAHRLK 387 (729)
Q Consensus 369 -~~~~vLIF~~s~------------------------------------------------------------~~~~~l~ 387 (729)
.+.++|||+|.+ ..++++.
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 234677776531 2445666
Q ss_pred HHHhhc--CCceeeccCCCCH--HHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCC--CC----------h
Q 004808 388 ILFGLA--ALKAAELHGNLTQ--AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP--RD----------L 451 (729)
Q Consensus 388 ~~L~~~--~~~~~~lhg~~~~--~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P--~s----------~ 451 (729)
+.|... +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|+|++|+.++.+ .+ .
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 666654 7889999999874 578999999999999999999999999999999999766544 32 2
Q ss_pred hhHHHHhcccccCCCccEEEEEeccCcHHHHHHHH
Q 004808 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (729)
Q Consensus 452 ~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~ 486 (729)
..|+|++||+||.+..|.+++.....+...++.+.
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 57899999999999999999887766655555543
No 82
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5e-28 Score=278.33 Aligned_cols=321 Identities=21% Similarity=0.247 Sum_probs=230.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+++|--.--.+..|+ |+.++||+|||++|++|++..++.. ..|+||+||++||.|.++++..+..+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G------~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG------RGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC------CCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 354 57888877766666664 8999999999999999999777543 24899999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccCccCC-----CCeeEEEEeCcchhh-cC--------C
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLL-EL--------G 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~~~~l-----~~i~~lVvDEah~ll-~~--------g 287 (729)
.++.+++++||.+.......+ .+||+|+||++| .++|.....+.+ ..+.++||||||.|| +. |
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 999999999998877654443 689999999999 999987644444 589999999999954 10 0
Q ss_pred -------hHHHHHHHHHhcCc-----------------------------------------------------------
Q 004808 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (729)
Q Consensus 288 -------f~~~i~~il~~~~~----------------------------------------------------------- 301 (729)
+...+..+...+..
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 00111111110000
Q ss_pred -----------------------------------------------------------------------CceEEEEec
Q 004808 302 -----------------------------------------------------------------------RRQTMLFSA 310 (729)
Q Consensus 302 -----------------------------------------------------------------------~~q~il~SA 310 (729)
..++.+||+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 012344455
Q ss_pred ccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHh--hccCCCeEEEEeCcHHHHHHHHH
Q 004808 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKI 388 (729)
Q Consensus 311 Tl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~--~~~~~~~vLIF~~s~~~~~~l~~ 388 (729)
|...+..++...+-...+ ..+.. .|..-...--.+.. ....+...+...+ ....+.++||||+|...++.|..
T Consensus 388 Ta~te~~Ef~~iY~l~Vv---~IPtn-kp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVV---VIPTN-RSMIRKDEADLVYL-TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CChhHHHHHHHHhCCCEE---ECCCC-CCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 544443333333321111 11111 11100000000111 1223333333333 13357899999999999999999
Q ss_pred HHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC-------------------------------
Q 004808 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII------------------------------- 437 (729)
Q Consensus 389 ~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~------------------------------- 437 (729)
+|...|+++..||+.+.+.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999995 999999999999996
Q ss_pred -------CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 438 -------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 438 -------~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
|==|||-...+.|...-.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 23478989999999999999999999999999999999776443
No 83
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.2e-29 Score=250.71 Aligned_cols=202 Identities=49% Similarity=0.786 Sum_probs=183.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 127 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|+++++++.+.+.|..+|+..|+++|.++++.++.|+|+++++|||+|||++|++|+++++..... ..++++||++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~-~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK-KDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc-cCCceEEEEcCCH
Confidence 678999999999999999999999999999999999999999999999999999999999877531 2457899999999
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC
Q 004808 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (729)
Q Consensus 207 eLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (729)
+|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|..++.+. .+.+..++++|+||||.+.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhcc
Confidence 9999999999999887889999999998877666666668999999999999998875 477899999999999999999
Q ss_pred ChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEE
Q 004808 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (729)
Q Consensus 287 gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i 330 (729)
+|...+..++..++..+|++++|||+++.+..++..++.+|+.+
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999999999999999999999999999999999988765
No 84
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=282.53 Aligned_cols=336 Identities=19% Similarity=0.229 Sum_probs=243.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCC----CCCCCcEEEEEcCcHHHHHHHHHH
Q 004808 141 EALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTPTRELAVQVHSM 215 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~----~~~~~~~vLIl~PtreLa~Q~~~~ 215 (729)
.-++|..+..+|..++|.+.. +.|+|||||||||||..|+|.+|+.+.... -.....++++|+|+++||..+++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 346788999999999999987 569999999999999999999998887521 123466899999999999999888
Q ss_pred HHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc--CccCCCCeeEEEEeCcchhhcCChHHHHH
Q 004808 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLELGFSAEIH 293 (729)
Q Consensus 216 ~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~--~~~~l~~i~~lVvDEah~ll~~gf~~~i~ 293 (729)
+.+-....|+.|..++|+......+ -..++|||+||+..--.-+.. ....++.+.+|||||+|.|-+. ....++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 7765566799999999998765544 245799999999863222222 1233678999999999977642 334444
Q ss_pred HHH-------HhcCcCceEEEEecccchhHHHHHH-HhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhH--------
Q 004808 294 ELV-------RLCPKRRQTMLFSATLTEDVDELIK-LSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ-------- 357 (729)
Q Consensus 294 ~il-------~~~~~~~q~il~SATl~~~v~~l~~-~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k-------- 357 (729)
.|+ .......++|++|||+|+... ++. +..+.+.-+..-....+|..+.+.++-.+.......
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~eD-vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYED-VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHHH-HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 433 333456789999999986543 433 333323334444455678888888876654311111
Q ss_pred HHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcC-----------------------CceeeccCCCCHHHHHHHHH
Q 004808 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-----------------------LKAAELHGNLTQAQRLEALE 414 (729)
Q Consensus 358 ~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~-----------------------~~~~~lhg~~~~~~R~~~l~ 414 (729)
...+..++. .+..|+|||.++..+.+.+..|.... ..++.+|++|...+|.-+..
T Consensus 339 ~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 111222222 36899999999999998888875321 34677899999999999999
Q ss_pred HHhcCCceEEEEcCccccccCCCCccEEE----EeCCCC------ChhhHHHHhccccc--CCCccEEEEEeccCcHHHH
Q 004808 415 LFRKQHVDFLIATDVAARGLDIIGVQTVI----NYACPR------DLTSYVHRVGRTAR--AGREGYAVTFVTDNDRSLL 482 (729)
Q Consensus 415 ~F~~g~~~vLVaTd~~~rGlDi~~v~~VI----~~d~P~------s~~~yiQriGRagR--~G~~G~~i~l~~~~d~~~l 482 (729)
.|..|.++||+||..++.|+++|.-..+| .||.-. ..-+.+|..||||| .+..|.++++.+..-....
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 99999999999999999999998766555 344332 45678999999999 4567999988776544433
Q ss_pred H
Q 004808 483 K 483 (729)
Q Consensus 483 ~ 483 (729)
.
T Consensus 497 ~ 497 (1230)
T KOG0952|consen 497 E 497 (1230)
T ss_pred H
Confidence 3
No 85
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.4e-27 Score=272.04 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=130.0
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEE
Q 004808 128 MELNLSRPLLRACE-----ALGYSKP---TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (729)
Q Consensus 128 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~v 199 (729)
..|++.+.+.+.+. .+||..| +|+|.++||.++.++++|+.++||+|||++|++|++.+++... .+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------~v 138 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------PV 138 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC------Ce
Confidence 45678888888776 6899999 9999999999999999999999999999999999998886431 38
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccCccCCC-------C
Q 004808 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDLD-------D 271 (729)
Q Consensus 200 LIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~~~~l~-------~ 271 (729)
+||+||++||.|+++++..+..+.++++.+++||.+...+...+ .+||+|+||++| +++++.. .+.++ .
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~ 215 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRG 215 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhccc
Confidence 99999999999999999999999999999999999988776554 589999999999 9999875 34444 5
Q ss_pred eeEEEEeCcchhh
Q 004808 272 LAVLILDEADRLL 284 (729)
Q Consensus 272 i~~lVvDEah~ll 284 (729)
+.++||||||.|+
T Consensus 216 ~~~~IIDEADsmL 228 (970)
T PRK12899 216 FYFAIIDEVDSIL 228 (970)
T ss_pred ccEEEEechhhhh
Confidence 6899999999976
No 86
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-28 Score=262.25 Aligned_cols=264 Identities=20% Similarity=0.258 Sum_probs=204.2
Q ss_pred cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhh-ccCCCeEEEEeCc
Q 004808 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KTFTSKVIIFSGT 379 (729)
Q Consensus 301 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~-~~~~~~vLIF~~s 379 (729)
...|+|++|||+.+.-.+.... .-+. ..-+|..+....+.+++..... ..++..+.. ...+.++||-+-|
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~---~vve-----QiIRPTGLlDP~ievRp~~~Qv-dDL~~EI~~r~~~~eRvLVTtLT 455 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGG---NVVE-----QIIRPTGLLDPEIEVRPTKGQV-DDLLSEIRKRVAKNERVLVTTLT 455 (663)
T ss_pred hcCCEEEEECCCChHHHHhccC---ceeE-----EeecCCCCCCCceeeecCCCcH-HHHHHHHHHHHhcCCeEEEEeeh
Confidence 3579999999998765443321 1111 1125666766667776644322 222333322 3456899999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCC-----CChhhH
Q 004808 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP-----RDLTSY 454 (729)
Q Consensus 380 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P-----~s~~~y 454 (729)
+++++.|..||...|+++.++|+++..-+|.+++..++.|.++|||..+++.+|||+|.|.+|.++|.. .|..+.
T Consensus 456 KkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 456 KKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999865 488999
Q ss_pred HHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-
Q 004808 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEERE-ERILRK- 532 (729)
Q Consensus 455 iQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~-~~~~~~- 532 (729)
+|.+|||+| +-.|.+|+|.+.-..++-++|.+....+-++..++..+-..+..+++.+.+.+......... .+....
T Consensus 536 IQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~~~~~~~~~~~ 614 (663)
T COG0556 536 IQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKA 614 (663)
T ss_pred HHHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhhhhhhhhhhhccccc
Confidence 999999999 56899999999999999999999888887888888888777777777776655433221111 111111
Q ss_pred HHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHHh
Q 004808 533 AEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIEK 578 (729)
Q Consensus 533 ~e~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 578 (729)
..+.......++..+...|...++.| |+. ++.+++.+.+|+.
T Consensus 615 ~~~~~~e~~~~I~~Le~~M~~aA~~l~FE~----Aa~lRD~i~~L~~ 657 (663)
T COG0556 615 SKMSKKELEKLIKKLEKEMKEAAKNLEFEE----AARLRDEIKELKE 657 (663)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHH
Confidence 12455667788888999999999999 987 9999999988874
No 87
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.9e-29 Score=270.99 Aligned_cols=330 Identities=18% Similarity=0.181 Sum_probs=236.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q 211 (729)
-+..+.++-..+.+ ..-.++++..|..+--+||||.||||||++....++++-+.......++.+-|..|+|..|.-
T Consensus 244 R~~EIQ~sR~~LPI---~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaia 320 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPI---VAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIA 320 (1172)
T ss_pred CcHHHHHHHhcCch---hHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHH
Confidence 34455554333321 233456777777777888999999999998777777777766655556689999999988877
Q ss_pred HHHHHH-HHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-c----
Q 004808 212 VHSMIE-KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-E---- 285 (729)
Q Consensus 212 ~~~~~~-~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~---- 285 (729)
++.... .|+. .+-.|.+.+.-. ......+.|.++|.|.|+..|.+ +|.|..+++|||||||.-. +
T Consensus 321 mAkRVa~EL~~-~~~eVsYqIRfd------~ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDIL 391 (1172)
T KOG0926|consen 321 MAKRVAFELGV-LGSEVSYQIRFD------GTIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDIL 391 (1172)
T ss_pred HHHHHHHHhcc-CccceeEEEEec------cccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHH
Confidence 665543 3333 344444443221 11234578999999999999988 7889999999999999743 2
Q ss_pred CChHHHHHHHHHhcCc------CceEEEEecccchh-HHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH
Q 004808 286 LGFSAEIHELVRLCPK------RRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 286 ~gf~~~i~~il~~~~~------~~q~il~SATl~~~-v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
.|+...+..+.....+ +..+|+||||+.-+ +.+...+|-..|..+.++... -| ...|+..+....+.....
T Consensus 392 iGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ-fP-VsIHF~krT~~DYi~eAf 469 (1172)
T KOG0926|consen 392 IGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ-FP-VSIHFNKRTPDDYIAEAF 469 (1172)
T ss_pred HHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc-Cc-eEEEeccCCCchHHHHHH
Confidence 2345555555444443 67899999999632 332334444444455554332 22 223333334444555667
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc---------------------------------------------
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--------------------------------------------- 393 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--------------------------------------------- 393 (729)
...+.++.+.+.+.+|||+...+.+..|+..|+..
T Consensus 470 rKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ 549 (1172)
T KOG0926|consen 470 RKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESD 549 (1172)
T ss_pred HHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccch
Confidence 77888999999999999999999999887777211
Q ss_pred ------------------------------------------------------CCceeeccCCCCHHHHHHHHHHHhcC
Q 004808 394 ------------------------------------------------------ALKAAELHGNLTQAQRLEALELFRKQ 419 (729)
Q Consensus 394 ------------------------------------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g 419 (729)
.+-|++|++-++...+.++++.-..|
T Consensus 550 ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g 629 (1172)
T KOG0926|consen 550 EDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKG 629 (1172)
T ss_pred hhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCC
Confidence 12377889999999999999999999
Q ss_pred CceEEEEcCccccccCCCCccEEEE--------eCCCCChhhH----------HHHhcccccCCCccEEEEEecc
Q 004808 420 HVDFLIATDVAARGLDIIGVQTVIN--------YACPRDLTSY----------VHRVGRTARAGREGYAVTFVTD 476 (729)
Q Consensus 420 ~~~vLVaTd~~~rGlDi~~v~~VI~--------~d~P~s~~~y----------iQriGRagR~G~~G~~i~l~~~ 476 (729)
..-|+|+|++|+..|.||+|++||. ||--+.+..| -||.|||||.| +|+||.||+.
T Consensus 630 ~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 630 ERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999999999999999999995 5554444443 59999999988 9999999885
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.3e-27 Score=270.63 Aligned_cols=319 Identities=20% Similarity=0.218 Sum_probs=236.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhh-HHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL-ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil-~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
+|. .|+++|--+.-.++.|+ |+.+.||+|||+++.+|++ +.+ .. ..|-|++||..||.|.++++..+..
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G------~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TG------KGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cC------CCEEEEecCHHHHHHHHHHHHHHHh
Confidence 455 58899988877777774 9999999999999999996 554 22 2377999999999999999999999
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccCc-----cCCCCeeEEEEeCcchhh-cCC-------
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-ELG------- 287 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~~-----~~l~~i~~lVvDEah~ll-~~g------- 287 (729)
+.|+++++++|+.+...+...+ .+||+|+||++| .++|++... ..+..+.++||||||.|| +..
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 9999999999998887766554 489999999999 999987532 246789999999999954 100
Q ss_pred --------hHHHHHHHHHhcCc----------------------------------------------------------
Q 004808 288 --------FSAEIHELVRLCPK---------------------------------------------------------- 301 (729)
Q Consensus 288 --------f~~~i~~il~~~~~---------------------------------------------------------- 301 (729)
+...+..+...+..
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 11111111111100
Q ss_pred -----------------------------------------------------------CceEEEEecccchhHHHHHHH
Q 004808 302 -----------------------------------------------------------RRQTMLFSATLTEDVDELIKL 322 (729)
Q Consensus 302 -----------------------------------------------------------~~q~il~SATl~~~v~~l~~~ 322 (729)
...+.+||+|...+..++...
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 124556677776555554444
Q ss_pred hcCCCeEEecCCCCCCCCCcee-EEEEeehhhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 004808 323 SLTKPLRLSADPSAKRPSTLTE-EVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (729)
Q Consensus 323 ~l~~p~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ 399 (729)
+-...+ ..|.. .|..-.. .-..+. ....+...+...+.. ..+.++||||+|...++.|..+|...|+++..
T Consensus 386 Y~l~vv---~IPtn-kp~~r~d~~d~i~~--t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 386 YNLDVV---VIPTN-RPMIRIDHPDLIYK--TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred hCCCEE---EcCCC-CCeeeeeCCCeEEE--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 432211 11111 1111111 001111 223455556555543 45789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC--------------------------------------ccE
Q 004808 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--------------------------------------VQT 441 (729)
Q Consensus 400 lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~--------------------------------------v~~ 441 (729)
||+. +.+|...+..|..+...|+|||++|+||+||+- ==|
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9995 889999999999999999999999999999963 247
Q ss_pred EEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 442 VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
||-...|.|...-.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 8999999999999999999999999999999999876443
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.2e-27 Score=268.26 Aligned_cols=320 Identities=20% Similarity=0.236 Sum_probs=227.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .|+++|--+.-.++.|+ |+...||+|||++..+|++-..+.. ..|-|++||--||.|-++++..+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G------~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG------KGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC------CCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 454 58999988877777776 9999999999999999988776543 34899999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhh-cCC--------
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG-------- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~g-------- 287 (729)
.|++|+++.++.+....... ..+||+++|..-| .++|+... ......+.+.||||+|.+| +..
T Consensus 148 LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 99999999988776654433 3579999998766 34454421 1224677899999999854 100
Q ss_pred -------hHHHHHHHHHhcCc-----------------------------------------------------------
Q 004808 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (729)
Q Consensus 288 -------f~~~i~~il~~~~~----------------------------------------------------------- 301 (729)
+...+..+...+..
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 00011111100000
Q ss_pred ---------------------------------------------------------------------CceEEEEeccc
Q 004808 302 ---------------------------------------------------------------------RRQTMLFSATL 312 (729)
Q Consensus 302 ---------------------------------------------------------------------~~q~il~SATl 312 (729)
..++.+||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 01344555555
Q ss_pred chhHHHHHHHhcCCCeEEecCCCCCCCCCceeE-EEEeehhhhhhHHHHHHHHhh--ccCCCeEEEEeCcHHHHHHHHHH
Q 004808 313 TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-VVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKIL 389 (729)
Q Consensus 313 ~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~k~~~l~~l~~--~~~~~~vLIF~~s~~~~~~l~~~ 389 (729)
..+..++...+-. ++ +.+ |.. .|...... -..+. ....+...+...+. ...+.++||||+|...++.|..+
T Consensus 386 ~~e~~Ef~~iY~l-~v-v~I-Ptn-kp~~r~d~~d~i~~--t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 386 KTEEEEFREIYNM-EV-ITI-PTN-RPVIRKDSPDLLYP--TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred HHHHHHHHHHhCC-CE-EEc-CCC-CCeeeeeCCCeEEc--CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 5444333332222 11 111 111 11110000 00111 12344445555553 23678999999999999999999
Q ss_pred HhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC---Ccc-----EEEEeCCCCChhhHHHHhccc
Q 004808 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLTSYVHRVGRT 461 (729)
Q Consensus 390 L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~---~v~-----~VI~~d~P~s~~~yiQriGRa 461 (729)
|...|+++..||+.+.+.++..+...++.|. |+|||++|+||+||+ +|. |||++++|.|...|.|++|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888877777776 999999999999994 899 999999999999999999999
Q ss_pred ccCCCccEEEEEeccCcHHH
Q 004808 462 ARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 462 gR~G~~G~~i~l~~~~d~~~ 481 (729)
||.|.+|.+.+|++..|.-+
T Consensus 538 GRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred ccCCCCcceEEEEeccchHH
Confidence 99999999999999886443
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=266.60 Aligned_cols=300 Identities=21% Similarity=0.242 Sum_probs=204.1
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+++|++++..+.. ++..++++|||+|||.++ +.++..+. ..+||||||++|+.||.+.+......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va-~~~~~~~~--------~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVA-AEAIAELK--------RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHH-HHHHHHhc--------CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 599999999999998 899999999999999886 44444431 12999999999999998777654332
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcC
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~ 302 (729)
. ..++.+.|+.... .. ..|+|+|...+..... ...+....+.+||+||||++....+......+....
T Consensus 107 ~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~--- 174 (442)
T COG1061 107 N-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY--- 174 (442)
T ss_pred c-cccceecCceecc------CC-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc---
Confidence 1 1234444432211 11 3699999999877420 012334579999999999998665554444333322
Q ss_pred ceEEEEecccchhHHHHH-HH-hcCCCeEEecCCC------CCCCCCceeEEEEeeh-----------------------
Q 004808 303 RQTMLFSATLTEDVDELI-KL-SLTKPLRLSADPS------AKRPSTLTEEVVRIRR----------------------- 351 (729)
Q Consensus 303 ~q~il~SATl~~~v~~l~-~~-~l~~p~~i~~~~~------~~~~~~l~~~~~~~~~----------------------- 351 (729)
.++++|||+........ .. .+..|+.+..... .-.|..+.........
T Consensus 175 -~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 175 -PRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred -ceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 28999999863321111 11 1111333332211 1111111111110000
Q ss_pred ----------hhhhhHHHHHHHHhhcc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 004808 352 ----------MREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (729)
Q Consensus 352 ----------~~~~~k~~~l~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 420 (729)
.....+...+..++... .+.++||||.+...+..+...|...++ +..+.+.++..+|..+++.|+.|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 00001111122222222 467999999999999999999998888 889999999999999999999999
Q ss_pred ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhccccc-CCCccE
Q 004808 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGY 469 (729)
Q Consensus 421 ~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR-~G~~G~ 469 (729)
+++|+++.++.+|+|+|+++++|...+..|+..|+||+||.-| ...++.
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999999 333443
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=6.3e-27 Score=274.87 Aligned_cols=314 Identities=20% Similarity=0.212 Sum_probs=204.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc--
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-- 222 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~-- 222 (729)
...|+|+|+.+......+.-+|+.||||+|||.++++.+. .+.... ...+++|.+||+++++|+++.+..+...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQG---LADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 3479999998865544556788999999999999755544 444322 1346999999999999999998875542
Q ss_pred cCceEEEEecCCChHHHH---------------------HHHh------cCCCeEEECchHHHHHHhccCccCCCC----
Q 004808 223 TDIRCCLVVGGLSTKMQE---------------------TALR------SMPDIVVATPGRMIDHLRNSMSVDLDD---- 271 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~---------------------~~l~------~~~dIvI~TP~~L~~~l~~~~~~~l~~---- 271 (729)
....+.+++|........ .-+. --.+|+|||+..++..+-......+..
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 345677777765422110 0011 126899999998875543322222222
Q ss_pred eeEEEEeCcchhhcCChHHHHHHHHHhc-CcCceEEEEecccchhHHHHHHHhcCC--Ce-------EEecCCC-C----
Q 004808 272 LAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTK--PL-------RLSADPS-A---- 336 (729)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~l~~~~l~~--p~-------~i~~~~~-~---- 336 (729)
-++|||||+|.+-. .+...+..+++.+ .....+|++|||+|..+...+...+.. ++ .+..... .
T Consensus 440 ~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 24899999998743 2334445555443 235679999999998876544332211 10 0000000 0
Q ss_pred ---CCCCC-ceeEEEEeehh--hh-hhHHHHHHHHhhc-cCCCeEEEEeCcHHHHHHHHHHHhhcC---CceeeccCCCC
Q 004808 337 ---KRPST-LTEEVVRIRRM--RE-VNQEAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLT 405 (729)
Q Consensus 337 ---~~~~~-l~~~~~~~~~~--~~-~~k~~~l~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~~---~~~~~lhg~~~ 405 (729)
..+.. -....+.+... .. ......+..+... ..+.++||||||+..+..++..|...+ ..+..+||.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 00000 00111111111 00 1112233333332 346789999999999999999998764 67999999999
Q ss_pred HHHH----HHHHHHH-hcCC---ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCC
Q 004808 406 QAQR----LEALELF-RKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (729)
Q Consensus 406 ~~~R----~~~l~~F-~~g~---~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~ 466 (729)
..+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ...|+||+||+||.++
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 4577888 6666 4799999999999999 68999998888 7899999999999775
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.5e-26 Score=274.09 Aligned_cols=329 Identities=18% Similarity=0.231 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll----~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.+.|+|.+++.+++ +|.++|++..+|.|||++. +.++..+..... ....+|||||. .+..||.+.+.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~--~~gp~LIVvP~-SlL~nW~~Ei~kw~-- 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRG--ITGPHMVVAPK-STLGNWMNEIRRFC-- 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcC--CCCCEEEEeCh-HHHHHHHHHHHHHC--
Confidence 68999999999986 4788999999999999975 445555443221 12348999997 55688999998876
Q ss_pred cCceEEEEecCCChHHHHH---HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc
Q 004808 223 TDIRCCLVVGGLSTKMQET---ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~---~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~ 299 (729)
+.+++..++|......... ......+|||+|++.+...... +.--.|.+|||||||++-+. ...+..++..+
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 4567777777543322211 1124579999999998765432 33346889999999999864 33344455555
Q ss_pred CcCceEEEEecccch-hHHHHHHHh-cCCCeEE----------------------------------ec---CCCCCCCC
Q 004808 300 PKRRQTMLFSATLTE-DVDELIKLS-LTKPLRL----------------------------------SA---DPSAKRPS 340 (729)
Q Consensus 300 ~~~~q~il~SATl~~-~v~~l~~~~-l~~p~~i----------------------------------~~---~~~~~~~~ 340 (729)
.. ...+++|+|+-. .+.++..+. +-.|-.+ .. +.....|+
T Consensus 318 ~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 ST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 43 345889999742 222221110 0001000 00 00000111
Q ss_pred CceeEEEEeeh------------------------------------------------------------hhhhhHHHH
Q 004808 341 TLTEEVVRIRR------------------------------------------------------------MREVNQEAV 360 (729)
Q Consensus 341 ~l~~~~~~~~~------------------------------------------------------------~~~~~k~~~ 360 (729)
. ....+.+.. .....+..+
T Consensus 397 K-~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 397 K-KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred c-eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 0 111111110 001122223
Q ss_pred HHHHhh--ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC---CceEEEEcCccccccC
Q 004808 361 LLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATDVAARGLD 435 (729)
Q Consensus 361 l~~l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g---~~~vLVaTd~~~rGlD 435 (729)
|..++. ...+.+||||+.....+..|..+|...++.++.|||.++..+|..+++.|+.. .+-+||+|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 333332 22467999999999999999999999999999999999999999999999863 3467999999999999
Q ss_pred CCCccEEEEeCCCCChhhHHHHhcccccCCCcc--EEEEEeccC--cHHHHHHHHHH
Q 004808 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREG--YAVTFVTDN--DRSLLKAIAKR 488 (729)
Q Consensus 436 i~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G--~~i~l~~~~--d~~~l~~i~~~ 488 (729)
+..+++||+||+||||..+.|++||++|.|+.. .+|.|++.+ |..++......
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999764 455666665 34555554443
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=3.1e-27 Score=266.25 Aligned_cols=300 Identities=17% Similarity=0.193 Sum_probs=194.9
Q ss_pred EEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHH---HHH
Q 004808 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ---ETA 242 (729)
Q Consensus 166 lv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~---~~~ 242 (729)
|+.|+||||||.+|+.. +..++.. +.++|||+|+++|+.|+++.+... .+..+.+++++.+.... +..
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLAL-----GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHH
Confidence 46899999999998544 4444433 336999999999999999998864 35678888998876543 222
Q ss_pred H-hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-----hH-HHHHHHHHhcCcCceEEEEecccchh
Q 004808 243 L-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FS-AEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 243 l-~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-----f~-~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
+ .+..+|||+|+..|. ..+.++++|||||+|...-++ |. ..+. ++.......++|++|||++.+
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCCCCHH
Confidence 2 345799999998763 236788999999999876332 11 2222 233334578899999998765
Q ss_pred HHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh--hhhHHHHHHHHhhcc-CCCeEEEEeCcHHH----------
Q 004808 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR--EVNQEAVLLSLCSKT-FTSKVIIFSGTKQA---------- 382 (729)
Q Consensus 316 v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~k~~~l~~l~~~~-~~~~vLIF~~s~~~---------- 382 (729)
....+... ....+...............++...... .......+..+.... .+..+|||+|++..
T Consensus 143 s~~~~~~g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQK--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhcC--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 54443221 1111111111100001111112111100 000111122222221 24678988765422
Q ss_pred --------------------------------------------------HHHHHHHHhhc--CCceeeccCCCCHHHH-
Q 004808 383 --------------------------------------------------AHRLKILFGLA--ALKAAELHGNLTQAQR- 409 (729)
Q Consensus 383 --------------------------------------------------~~~l~~~L~~~--~~~~~~lhg~~~~~~R- 409 (729)
++++...|... +.++..+|+++++..+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 46666666655 7789999999987766
Q ss_pred -HHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCC------------ChhhHHHHhcccccCCCccEEEEEecc
Q 004808 410 -LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------DLTSYVHRVGRTARAGREGYAVTFVTD 476 (729)
Q Consensus 410 -~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~------------s~~~yiQriGRagR~G~~G~~i~l~~~ 476 (729)
..+++.|++|+.+|||+|+++++|+|+|+|++|+.++... ..+.|+|++||+||.+..|.+++....
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 8999999999999999999999999999999986444332 246789999999999999999977655
Q ss_pred CcHHHHHHH
Q 004808 477 NDRSLLKAI 485 (729)
Q Consensus 477 ~d~~~l~~i 485 (729)
.+...++.+
T Consensus 381 p~~~~~~~~ 389 (505)
T TIGR00595 381 PNHPAIQAA 389 (505)
T ss_pred CCCHHHHHH
Confidence 554444443
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4e-26 Score=255.10 Aligned_cols=326 Identities=19% Similarity=0.217 Sum_probs=240.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
..++|. |.+.|+++|-++..|..|+|.|+|.+|||+++-.++.-.- ...+|+++..|-.+|.+|-++.|+.-
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~t- 363 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKET- 363 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHh-
Confidence 445664 8999999999999999999999999999986544332211 13557999999999999999988863
Q ss_pred hccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC
Q 004808 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (729)
Q Consensus 221 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~ 300 (729)
|.+ +.+++|+.. +.....++|+|.+.|...|.++.++ ++++++||+||+|.+.+....-.|.+++-.+|
T Consensus 364 -F~D--vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 364 -FGD--VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred -ccc--cceeeccee-------eCCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeecc
Confidence 222 237788755 3455789999999999999987544 78899999999999999888888899999999
Q ss_pred cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh---------------------------
Q 004808 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR--------------------------- 353 (729)
Q Consensus 301 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~--------------------------- 353 (729)
+..++|++|||+|+.+...-+..-.+.-.+.+.....+|..+.+++..-....
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 99999999999997655433333333333334444455655555543211000
Q ss_pred -------------------------h----------hh---HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcC-
Q 004808 354 -------------------------E----------VN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA- 394 (729)
Q Consensus 354 -------------------------~----------~~---k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~- 394 (729)
. .. ....+...+....--++||||-++..|+..+++|...+
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0 00 01112222333334589999999999999998884322
Q ss_pred --------------------------------------CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 395 --------------------------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 395 --------------------------------------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
-.++++||++-+--..-+.-.|..|-++||+||..+++|+|+
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 237789999999999889999999999999999999999999
Q ss_pred CCccEEEEeCCC---------CChhhHHHHhcccccCC--CccEEEEEeccC--cHHHHHHHH
Q 004808 437 IGVQTVINYACP---------RDLTSYVHRVGRTARAG--REGYAVTFVTDN--DRSLLKAIA 486 (729)
Q Consensus 437 ~~v~~VI~~d~P---------~s~~~yiQriGRagR~G--~~G~~i~l~~~~--d~~~l~~i~ 486 (729)
|.-.+|+. .+- -.|-.|.|++|||||.| ..|++++++... +...++.+.
T Consensus 673 PARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li 734 (1248)
T KOG0947|consen 673 PARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLI 734 (1248)
T ss_pred CceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHh
Confidence 87666652 222 26889999999999988 468888887654 445555443
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=3.5e-26 Score=253.02 Aligned_cols=333 Identities=22% Similarity=0.257 Sum_probs=239.6
Q ss_pred CCCHHH-HHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 131 NLSRPL-LRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 131 ~l~~~l-~~~l~~~g~~~pt~iQ~~~i~~ll~g------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
.....+ .+.+..++|. ||..|+.++.-|... -+=|+.|.-|||||+++++.++..+- .+.++.+.+
T Consensus 246 ~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMA 318 (677)
T COG1200 246 PANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMA 318 (677)
T ss_pred CccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEec
Confidence 444444 4445778885 999999999998873 35679999999999999999998873 455799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
||--||.|.++.+.++....+++|..++|..........+ .+..+|||+|-.-+.+ .+.+.++.++|+||
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~LgLVIiDE 392 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEFHNLGLVIIDE 392 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceeecceeEEEEec
Confidence 9999999999999999998999999999998766554333 3448999999544332 67789999999999
Q ss_pred cchhhcCChHHHHHHHHHhcCc-CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH
Q 004808 280 ADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 280 ah~ll~~gf~~~i~~il~~~~~-~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
=|+. .-.-...+..-.. .+.+++||||+-|....+....--+.-.+..-+.... .+.-..+... ....-.
T Consensus 393 QHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRk--pI~T~~i~~~--~~~~v~ 463 (677)
T COG1200 393 QHRF-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRK--PITTVVIPHE--RRPEVY 463 (677)
T ss_pred cccc-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCC--ceEEEEeccc--cHHHHH
Confidence 9994 3333333333333 5789999999877655444322211111111111111 1222222211 111112
Q ss_pred HHHHHHhhccCCCeEEEEeCcHH--------HHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQ--------AAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~--------~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 428 (729)
..+..-+. .+..+.|.||-.+ .+..+...|... ++.++.+||.|+..+..+++..|++|+.+|||||.
T Consensus 464 e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT 541 (677)
T COG1200 464 ERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT 541 (677)
T ss_pred HHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 22222222 4678888898654 344455555532 66799999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEeCCCC-ChhhHHHHhcccccCCCccEEEEEeccCc----HHHHHHHHH
Q 004808 429 VAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND----RSLLKAIAK 487 (729)
Q Consensus 429 ~~~rGlDi~~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~i~l~~~~d----~~~l~~i~~ 487 (729)
+.+.|+|+|+.+++|+++.-. ..++.-|-.||+||.+...+|++++.+.. ...|+-+.+
T Consensus 542 VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~ 605 (677)
T COG1200 542 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRE 605 (677)
T ss_pred EEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHh
Confidence 999999999999999998765 67888999999999889999999998865 344544443
No 96
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=250.92 Aligned_cols=342 Identities=22% Similarity=0.239 Sum_probs=250.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCC-Cchh--hHHhhhhhhHHHhc-------------------------CCCCCC
Q 004808 144 GYSKPTPIQAACIPLALTGRDICGSAIT-GSGK--TAAFALPTLERLLY-------------------------RPKRIP 195 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~g~dvlv~a~T-GsGK--T~a~~lpil~~l~~-------------------------~~~~~~ 195 (729)
.-..+|+.|.+.+..+.+++|+++.-.| +.|+ +-+|+|++|+|++. ++++.+
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457899999999999999999864333 4455 56899999999872 345678
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCc---------eEE----------------------EEecCCChHHHHHH--
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDI---------RCC----------------------LVVGGLSTKMQETA-- 242 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i---------~v~----------------------~~~gg~~~~~~~~~-- 242 (729)
+|+||||||+|+.|..+.+.+..+....+- ++. ++.|+ ..+.+...
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GN-tDD~FriGl~ 371 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGN-TDDAFRIGLA 371 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCC-CcchhhhhHH
Confidence 999999999999999999999888432211 111 11222 22222111
Q ss_pred -------H---hcCCCeEEECchHHHHHHhccC----cc-CCCCeeEEEEeCcchhh--cCChHHHHHHHHHhcCc----
Q 004808 243 -------L---RSMPDIVVATPGRMIDHLRNSM----SV-DLDDLAVLILDEADRLL--ELGFSAEIHELVRLCPK---- 301 (729)
Q Consensus 243 -------l---~~~~dIvI~TP~~L~~~l~~~~----~~-~l~~i~~lVvDEah~ll--~~gf~~~i~~il~~~~~---- 301 (729)
| ...+||+||+|..|..++.+.. .+ .|++|+++|||.||.|+ ||.+...+...++.+|.
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 1 1348999999999999998432 22 28999999999999887 78888888888888885
Q ss_pred -----------------CceEEEEecccchhHHHHHHHhcCCCeEEecC-------CCCCCCCCceeEEEEeehhhhhh-
Q 004808 302 -----------------RRQTMLFSATLTEDVDELIKLSLTKPLRLSAD-------PSAKRPSTLTEEVVRIRRMREVN- 356 (729)
Q Consensus 302 -----------------~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~-------~~~~~~~~l~~~~~~~~~~~~~~- 356 (729)
.+|+|+||+...+.+..++...|.+-.-.... ........+.|.+.++.......
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 36999999999999999988887663211110 01112223445554443222111
Q ss_pred ---HHHHHHH-H---hhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 004808 357 ---QEAVLLS-L---CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (729)
Q Consensus 357 ---k~~~l~~-l---~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~ 429 (729)
+..+... + +.......+|||+|++-+..+++++|....+++..+|.+.++..-.++.+.|..|...|||+|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 1111111 1 11222468899999999999999999999999999999999999999999999999999999998
Q ss_pred cc--cccCCCCccEEEEeCCCCChhhHHH---HhcccccCC----CccEEEEEeccCcHHHHHHHH
Q 004808 430 AA--RGLDIIGVQTVINYACPRDLTSYVH---RVGRTARAG----REGYAVTFVTDNDRSLLKAIA 486 (729)
Q Consensus 430 ~~--rGlDi~~v~~VI~~d~P~s~~~yiQ---riGRagR~G----~~G~~i~l~~~~d~~~l~~i~ 486 (729)
+. |..+|.||+.||+|.+|.+|.+|.. +++|+.-.| ..-.|.++++..|.-.|..|.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 84 9999999999999999999999964 455654333 235788999999987777665
No 97
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=2.3e-26 Score=252.49 Aligned_cols=323 Identities=19% Similarity=0.276 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.+++||.+.+.|+.+ |-++|+...+|.|||++ .|.+|..+..... .++ ..||+||...|.+ |.+.+.+|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~-~~G-PfLVi~P~StL~N-W~~Ef~rf~-- 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG-IPG-PFLVIAPKSTLDN-WMNEFKRFT-- 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC-CCC-CeEEEeeHhhHHH-HHHHHHHhC--
Confidence 689999999999875 77899999999999998 4666666655332 233 3899999988844 556666654
Q ss_pred cCceEEEEecCCChHHH--H-HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc
Q 004808 223 TDIRCCLVVGGLSTKMQ--E-TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~--~-~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~ 299 (729)
+++++++++|....... . .......+|+|+|++..+.-- ..+.--.|++|||||||++-|. ...+..+++.+
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 68899999987532211 1 112346899999999886542 1334457899999999998774 33444555555
Q ss_pred CcCceEEEEecccc-hhHHHH-----------------------------------------------------------
Q 004808 300 PKRRQTMLFSATLT-EDVDEL----------------------------------------------------------- 319 (729)
Q Consensus 300 ~~~~q~il~SATl~-~~v~~l----------------------------------------------------------- 319 (729)
.... .+|+|+|+- +++.++
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 4433 355555543 222221
Q ss_pred ----------------------------------------------HHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh
Q 004808 320 ----------------------------------------------IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (729)
Q Consensus 320 ----------------------------------------------~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~ 353 (729)
++..|+.|..+...... .|.....+. ..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttdehL-----v~ 468 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDEHL-----VT 468 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcchHH-----Hh
Confidence 11112222111110000 000000000 11
Q ss_pred hhhHHHHHHHHhh--ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC---ceEEEEcC
Q 004808 354 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH---VDFLIATD 428 (729)
Q Consensus 354 ~~~k~~~l~~l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~---~~vLVaTd 428 (729)
.+.+..+|..++. ...+++||||.+...+.+.|..|+...++.++.|.|.++-++|..+++.|.... +-+||+|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 1233334444443 234789999999999999999999999999999999999999999999999654 55899999
Q ss_pred ccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCc--cEEEEEeccCc--HHHHHHHHH
Q 004808 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAIAK 487 (729)
Q Consensus 429 ~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~--G~~i~l~~~~d--~~~l~~i~~ 487 (729)
+++.|||+..+++||.||..|||+.-+|.+.||+|.|+. -.||.|++.+. ..++++...
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~ 611 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA 611 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999975 55666677764 345554443
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.9e-25 Score=254.76 Aligned_cols=318 Identities=19% Similarity=0.201 Sum_probs=227.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+++|--.--.+..| -|+.++||.|||++|.+|++.+.+... .|.||+|++.||.|..+++..+..+
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~------~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK------GVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCC------CEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 454 4788887666666555 489999999999999999997775432 3999999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccCccC-----CCCeeEEEEeCcchhhcCC---------
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVD-----LDDLAVLILDEADRLLELG--------- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~~~~-----l~~i~~lVvDEah~ll~~g--------- 287 (729)
.|+.|.++.++.+.... .-...+||+++||+.| .++|+....+. ...+.++||||||.|+-..
T Consensus 150 lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 150 LGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred cCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 99999999998876332 2233689999999999 99998753333 3788899999999865200
Q ss_pred -------hHHHHH----HHHH------------------------------------hc---------------------
Q 004808 288 -------FSAEIH----ELVR------------------------------------LC--------------------- 299 (729)
Q Consensus 288 -------f~~~i~----~il~------------------------------------~~--------------------- 299 (729)
+...+. .+.. .+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 000000 0000 00
Q ss_pred -------------Cc-------------------------------------------------------------CceE
Q 004808 300 -------------PK-------------------------------------------------------------RRQT 305 (729)
Q Consensus 300 -------------~~-------------------------------------------------------------~~q~ 305 (729)
.+ ..++
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 00 0123
Q ss_pred EEEecccchhHHHHHHHhcCCCeEEecCCCCCCCC---CceeEEEEeehhhhhhHHHHHHHHhh--ccCCCeEEEEeCcH
Q 004808 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS---TLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTK 380 (729)
Q Consensus 306 il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~---~l~~~~~~~~~~~~~~k~~~l~~l~~--~~~~~~vLIF~~s~ 380 (729)
.+||+|...+..++...+-...+. .+.. .|. .....+. . ....+...+..-+. ...+.+|||||+|.
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~---IPTn-kp~~R~d~~d~iy--~--t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv 459 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVV---VPTN-RPMVRKDMADLVY--L--TADEKYQAIIKDIKDCRERGQPVLVGTVSI 459 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEE---CCCC-CCccceeCCCcEE--e--CHHHHHHHHHHHHHHHHHcCCCEEEEeCcH
Confidence 444555544444333332221111 1111 111 1111111 1 11223333322222 23478999999999
Q ss_pred HHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC-----------------------
Q 004808 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII----------------------- 437 (729)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~----------------------- 437 (729)
..++.|..+|...++++..||+.+++.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 460 ~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~ 537 (908)
T PRK13107 460 EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKI 537 (908)
T ss_pred HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHH
Confidence 9999999999999999999999999999999999999998 999999999999996
Q ss_pred --------------CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 438 --------------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 438 --------------~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
|==|||-...|.|...-.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 538 ~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 538 KADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 33479999999999999999999999999999999999877533
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.2e-26 Score=263.20 Aligned_cols=310 Identities=19% Similarity=0.213 Sum_probs=223.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH-hhccCceE
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRC 227 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l-~~~~~i~v 227 (729)
+....+++..+.+++-+|++|+||||||++....+++..+ ..++++.++.|.|..|.-+++.+... ....|-.|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 4456667777778888999999999999987776776654 23457999999998888777666543 23345455
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch-hhcCChHHH-HHHHHHhcCcCceE
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSAE-IHELVRLCPKRRQT 305 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~-ll~~gf~~~-i~~il~~~~~~~q~ 305 (729)
++.+...+ .....+.|-++|.|.|+..+.+ +..|+.+++|||||||+ -++.+|.-. +..++...+...++
T Consensus 127 GY~iRfe~------~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFES------KVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeec------cCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 55444322 1234578999999999999987 56699999999999996 445554433 34456666767899
Q ss_pred EEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEee-hhh-hhhHHHHHHHHhhccCCCeEEEEeCcHHHH
Q 004808 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383 (729)
Q Consensus 306 il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~-~~~-~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~ 383 (729)
|+||||+..+ .+ ..++.+...+.+..... | +.-.|.... ... .................+.+|||.+...++
T Consensus 199 IimSATld~~--rf-s~~f~~apvi~i~GR~f-P--Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE--RF-SAYFGNAPVIEIEGRTY-P--VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH--HH-HHHcCCCCEEEecCCcc-c--eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999999754 22 34455433444332221 1 111111111 111 112222233334455678999999999999
Q ss_pred HHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC------------
Q 004808 384 HRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC------------ 447 (729)
Q Consensus 384 ~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~------------ 447 (729)
.++...|.. ..+.+.+|||.|+..++.++++.-..|+.+|++||++++.+|.|++|++||.-+.
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999987 3578999999999999999999888888889999999999999999999996432
Q ss_pred ------CCChhhHHHHhcccccCCCccEEEEEeccCc
Q 004808 448 ------PRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (729)
Q Consensus 448 ------P~s~~~yiQriGRagR~G~~G~~i~l~~~~d 478 (729)
|-|-++..||.||+||.+ +|.||-++++.+
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 225677889999999976 999999999754
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=8.4e-25 Score=254.38 Aligned_cols=322 Identities=22% Similarity=0.254 Sum_probs=249.1
Q ss_pred HHcCCCCCcHHHHHHHHHHhc----C--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHH
Q 004808 141 EALGYSKPTPIQAACIPLALT----G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~----g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~ 214 (729)
..++|. -||-|..+|..+.. + -|=|+||.-|-|||-+++=+++-.+. .+.+|.|||||.-||.|.++
T Consensus 589 ~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 589 ASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred hcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHhHHHHHH
Confidence 445665 69999999988875 3 38999999999999988777777764 34579999999999999999
Q ss_pred HHHHHhhccCceEEEEecCCChHHHHHHHh----cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHH
Q 004808 215 MIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290 (729)
Q Consensus 215 ~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~ 290 (729)
.|..-....+++|..+..-.+..++...+. +..||||+|.-- |.. ++.+.++.+|||||=|+ |.-
T Consensus 662 tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L~k--dv~FkdLGLlIIDEEqR-----FGV 730 (1139)
T COG1197 662 TFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----LSK--DVKFKDLGLLIIDEEQR-----FGV 730 (1139)
T ss_pred HHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----hCC--CcEEecCCeEEEechhh-----cCc
Confidence 998877777899999988888777766553 458999999432 332 68889999999999999 455
Q ss_pred HHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCC
Q 004808 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (729)
Q Consensus 291 ~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~ 370 (729)
.-.+-++.+..+.-++-+|||+-|....+.-..+.+--.+...+....| + +.++. +......+.+++..+. .+
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V-~T~V~-~~d~~~ireAI~REl~---Rg 803 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--V-KTFVS-EYDDLLIREAILRELL---RG 803 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--e-EEEEe-cCChHHHHHHHHHHHh---cC
Confidence 5566677777888899999999887777766666554444443333222 1 22221 1111222333333332 36
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCC
Q 004808 371 SKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448 (729)
Q Consensus 371 ~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P 448 (729)
+.+...+|..+.++.++..|... ...+++.||.|+..+-..++..|.+|+++|||||.+.+.|||||+++++|..+..
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 77888889999999999988865 5678999999999999999999999999999999999999999999999987766
Q ss_pred C-ChhhHHHHhcccccCCCccEEEEEeccC------cHHHHHHHHH
Q 004808 449 R-DLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAK 487 (729)
Q Consensus 449 ~-s~~~yiQriGRagR~G~~G~~i~l~~~~------d~~~l~~i~~ 487 (729)
. ...+..|-.||+||.++.++||+++.+. -.+.|+.|.+
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5 6889999999999999999999998864 2455666665
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.4e-24 Score=250.68 Aligned_cols=330 Identities=20% Similarity=0.218 Sum_probs=238.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 140 l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
...+||. |.++|++++-.+..|..|++|||||+|||.+.-.++...+. .+.++++++|..+|.+|.+..+...
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHH
Confidence 3456775 89999999999999999999999999999876555544442 2335999999999999999888754
Q ss_pred hhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc
Q 004808 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (729)
Q Consensus 220 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~ 299 (729)
.....-.+++++|+.+ ++..+.|+|+|.+.|.+.+..+ ...+..++.||+||+|.|.+......+++++-.+
T Consensus 186 fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 3211233567777755 3466789999999999998876 6778999999999999999988888899999999
Q ss_pred CcCceEEEEecccchhHHHHHHHh--cCCCeEEecCCCCCCCCCceeEEEEeeh----hhhhhH---------H------
Q 004808 300 PKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRR----MREVNQ---------E------ 358 (729)
Q Consensus 300 ~~~~q~il~SATl~~~v~~l~~~~--l~~p~~i~~~~~~~~~~~l~~~~~~~~~----~~~~~k---------~------ 358 (729)
|...|+++||||+++....-.+.. -..|+.+.. ...+|..+.+++..-.. .....+ .
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~--t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS--TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe--ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 999999999999986654433333 334443333 34456556555432100 000000 0
Q ss_pred --------------------------------HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh--------------
Q 004808 359 --------------------------------AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------- 392 (729)
Q Consensus 359 --------------------------------~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-------------- 392 (729)
..+...+......++|+||-++..|+.++..+..
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 0011111222345799999999999888666631
Q ss_pred --------------cCC-------------ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE--
Q 004808 393 --------------AAL-------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI-- 443 (729)
Q Consensus 393 --------------~~~-------------~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI-- 443 (729)
.++ .++++|++|-+..+..+...|..|-++||++|.+++.|+|+|.-++|+
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~ 495 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTS 495 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeee
Confidence 111 245789999999999999999999999999999999999998766655
Q ss_pred --EeC----CCCChhhHHHHhcccccCCC--ccEEEEEeccC--cHHHHHHHH
Q 004808 444 --NYA----CPRDLTSYVHRVGRTARAGR--EGYAVTFVTDN--DRSLLKAIA 486 (729)
Q Consensus 444 --~~d----~P~s~~~yiQriGRagR~G~--~G~~i~l~~~~--d~~~l~~i~ 486 (729)
.+| .+-++..|.|+.||+||.|- .|.+|++..+. +.+-...+.
T Consensus 496 l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~ 548 (1041)
T COG4581 496 LSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLA 548 (1041)
T ss_pred eEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhh
Confidence 222 22378999999999999885 48888885543 334444443
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.94 E-value=4e-25 Score=254.84 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=151.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeC--
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA-- 446 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d-- 446 (729)
.+.++||||+|+..+++|..+|...|+.+..+||++++.+|..++..|+.|++.|||||+++++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004808 447 ---CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523 (729)
Q Consensus 447 ---~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 523 (729)
.|.+..+|+||+|||||. ..|.|++|++..+..+...|.+.....-.+..++..+...+..+++.+.+.+......
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 599 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKE 599 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHHHhhhhhhc
Confidence 799999999999999997 6899999999999999999887632222224445444444444444444433211100
Q ss_pred HH-HHHH----HHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHH
Q 004808 524 ER-EERI----LRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASI 576 (729)
Q Consensus 524 e~-~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~ 576 (729)
+. .... .....+.....+.++..+...|.+.+..+ |+. ++..++.+..|
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~M~~aa~~l~FE~----Aa~~RD~i~~L 654 (655)
T TIGR00631 600 KEDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAARNLEFEE----AARLRDEILEL 654 (655)
T ss_pred ccchhhccccccccccCCHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHhc
Confidence 00 0000 00001122335566667777777766666 776 66677666543
No 103
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.93 E-value=2e-24 Score=233.89 Aligned_cols=300 Identities=20% Similarity=0.225 Sum_probs=229.4
Q ss_pred hcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc-Cc----eEEEEec---------------CCChHHHHHHH----
Q 004808 188 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DI----RCCLVVG---------------GLSTKMQETAL---- 243 (729)
Q Consensus 188 ~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~-~i----~v~~~~g---------------g~~~~~~~~~l---- 243 (729)
..++++.++|+||||+|+|..|.++++.+..++... .+ ++.--+| ...+......+
T Consensus 29 ~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~ 108 (442)
T PF06862_consen 29 EFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNN 108 (442)
T ss_pred hhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCc
Confidence 346788999999999999999999999988876431 10 0000011 01111111111
Q ss_pred --------------------hcCCCeEEECchHHHHHHhcc----Ccc-CCCCeeEEEEeCcchhh--cCChHHHHHHHH
Q 004808 244 --------------------RSMPDIVVATPGRMIDHLRNS----MSV-DLDDLAVLILDEADRLL--ELGFSAEIHELV 296 (729)
Q Consensus 244 --------------------~~~~dIvI~TP~~L~~~l~~~----~~~-~l~~i~~lVvDEah~ll--~~gf~~~i~~il 296 (729)
...+|||||||..|...+... ... .|++|+++|||.||.|+ ||.|...+...+
T Consensus 109 DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~l 188 (442)
T PF06862_consen 109 DDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHL 188 (442)
T ss_pred cceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHh
Confidence 123799999999999988741 122 39999999999999877 899999999999
Q ss_pred HhcCc---------------------CceEEEEecccchhHHHHHHHhcCCCe---EEecCCC-----CCCCCCceeEEE
Q 004808 297 RLCPK---------------------RRQTMLFSATLTEDVDELIKLSLTKPL---RLSADPS-----AKRPSTLTEEVV 347 (729)
Q Consensus 297 ~~~~~---------------------~~q~il~SATl~~~v~~l~~~~l~~p~---~i~~~~~-----~~~~~~l~~~~~ 347 (729)
+..|+ -+|+|+||+..++++..+....|.+.. .+..... ......+.|.+.
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 98885 379999999999999999998777642 2221111 234557788888
Q ss_pred EeehhhhhhHHHH---------HHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc
Q 004808 348 RIRRMREVNQEAV---------LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (729)
Q Consensus 348 ~~~~~~~~~k~~~---------l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 418 (729)
++........... +-.+......+++|||++|+-+..+|+++|...++.++.+|.++++.+-.++...|..
T Consensus 269 r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~ 348 (442)
T PF06862_consen 269 RFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH 348 (442)
T ss_pred EecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc
Confidence 8765433322222 1222224456899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCccc--cccCCCCccEEEEeCCCCChhhHHHHhcccccCCC------ccEEEEEeccCcHHHHHHHHH
Q 004808 419 QHVDFLIATDVAA--RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR------EGYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 419 g~~~vLVaTd~~~--rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~------~G~~i~l~~~~d~~~l~~i~~ 487 (729)
|+..|||+|..+. +.+.|.||++||+|.+|.+|..|-..+.-.+.... ...|.++++..|...|+.|.-
T Consensus 349 G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 349 GRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred CCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 9999999999884 89999999999999999999999988876554332 579999999999998888763
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=8.2e-25 Score=239.76 Aligned_cols=309 Identities=16% Similarity=0.151 Sum_probs=216.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HhhccCceE
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRC 227 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~-l~~~~~i~v 227 (729)
..+-.+++..+-.++-+|+.|+||||||++....+++..+. ..+++.|..|+|..|.-++..+.. .....|-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 34456677777788899999999999999744444444332 233599999999888877765543 333345555
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc---CcCce
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC---PKRRQ 304 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~---~~~~q 304 (729)
++.+.-.+. ....+.|.++|.|.|+..+.. +..|+.+++|||||||.-.- +.+-+.-+++.+ .+..+
T Consensus 128 GY~IRFed~------ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDS------TSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSL--HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEeccc------CCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhh--HHHHHHHHHHHHHhcCCCce
Confidence 554433221 123468999999999999876 56789999999999996321 123333333332 34568
Q ss_pred EEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEee-hhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHH
Q 004808 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383 (729)
Q Consensus 305 ~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~ 383 (729)
+|++|||+..+ ....++.....+.+.... -| +...+..-+ ..+.......+..++...+++-+|||.+..+++
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~GR~-fP--Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPGRT-FP--VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecCCC-Cc--eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999743 334555553333332221 11 222222111 112223334456666777888999999999999
Q ss_pred HHHHHHHhhc----CC----ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE--------eCC
Q 004808 384 HRLKILFGLA----AL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------YAC 447 (729)
Q Consensus 384 ~~l~~~L~~~----~~----~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~--------~d~ 447 (729)
+.++..|... +- -+.++||.|+..++.+++..-..|..+|+|+|++++..|.|+||.+||. |++
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9998888654 11 2468999999999999999999999999999999999999999999995 333
Q ss_pred ----------CCChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 448 ----------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 448 ----------P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
|-|-.+-.||.||+||.| +|.|+.++++.+.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 346778899999999986 9999999998764
No 105
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=7.1e-25 Score=250.44 Aligned_cols=347 Identities=19% Similarity=0.220 Sum_probs=249.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCC-----CCCCcEEEEEcC
Q 004808 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTP 204 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-----~~~~~~vLIl~P 204 (729)
.+|.+-..++ .|...+.++|..+.+.++.+ .++++|||||+|||-.+++-+|+.+-.+.. ...+.++++++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3444444444 36777999999999999997 589999999999999999999998865432 134568999999
Q ss_pred cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccC-CCCeeEEEEeCcchh
Q 004808 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVD-LDDLAVLILDEADRL 283 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~-l~~i~~lVvDEah~l 283 (729)
..+|+..|...+.+.....++.|.-.+|......+. .....|+|+||+..--.-+++.+.. .+-++++|+||.|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999888887778899999999986644332 2457899999998633333322222 345789999999976
Q ss_pred hcCChHHHHHHHHHh-------cCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh
Q 004808 284 LELGFSAEIHELVRL-------CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 284 l~~gf~~~i~~il~~-------~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (729)
-+. ..+.+..|... -.....++++|||+|+... .......++.-+.......+|..+.|.++.+.......
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 432 33444333322 2346789999999986533 33322333333444445568889999998876544333
Q ss_pred HHH-----HHHHHhhccCCCeEEEEeCcHHHHHHHHHHHh-------------------------------------hcC
Q 004808 357 QEA-----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG-------------------------------------LAA 394 (729)
Q Consensus 357 k~~-----~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~-------------------------------------~~~ 394 (729)
+.. ....++.....+.||||+.+++++-..++.++ ...
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 322 23344455556899999999887766655442 123
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE----EeCCC------CChhhHHHHhcccccC
Q 004808 395 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYACP------RDLTSYVHRVGRTARA 464 (729)
Q Consensus 395 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI----~~d~P------~s~~~yiQriGRagR~ 464 (729)
+.++.+|++|+..+|..+.+.|.+|.++|||+|-.+++|+|+|+-+++| .|++- -+|...+||.||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 6789999999999999999999999999999999999999999877776 36653 3789999999999996
Q ss_pred C--CccEEEEEeccCcHHHHHH
Q 004808 465 G--REGYAVTFVTDNDRSLLKA 484 (729)
Q Consensus 465 G--~~G~~i~l~~~~d~~~l~~ 484 (729)
+ +.|..++.....+..+.-.
T Consensus 688 ~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHH
Confidence 5 3466666655555444333
No 106
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=7.2e-26 Score=247.49 Aligned_cols=320 Identities=20% Similarity=0.243 Sum_probs=236.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.+.|.|..+|..+-++..|+|+|.|.+|||.++-.++...|.. .-||++..|-.+|.+|-++.+..- |. .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~------kQRVIYTSPIKALSNQKYREl~~E--F~--D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE------KQRVIYTSPIKALSNQKYRELLEE--FK--D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh------cCeEEeeChhhhhcchhHHHHHHH--hc--c
Confidence 4889999999999999999999999999999877777666532 236999999999999999988763 32 3
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEE
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~i 306 (729)
|++.+|+.+. ...+..+|+|.+.|...|.++ +--+..+.+||+||+|.|-+....-.|.+-+-++|+..+.+
T Consensus 199 VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeecceee-------CCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 5677887653 455789999999999998876 44588999999999999998776667777778899999999
Q ss_pred EEecccchhHH--HHHHHhcCCCeEEecCCCCCCCCCceeEEEEeeh------------hhhhhHHH-------------
Q 004808 307 LFSATLTEDVD--ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR------------MREVNQEA------------- 359 (729)
Q Consensus 307 l~SATl~~~v~--~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~------------~~~~~k~~------------- 359 (729)
++|||+|+... +++...-..|..+.. ...+|..+.|+...... .++..-..
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999997644 344444445544433 44566666666432110 00000000
Q ss_pred ------------------------HHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcC---------------------
Q 004808 360 ------------------------VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--------------------- 394 (729)
Q Consensus 360 ------------------------~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~--------------------- 394 (729)
.+...+-.....+||||+-++++|+.++..+....
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 11111112223589999999999999877664322
Q ss_pred ------------------CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----eCCC---C
Q 004808 395 ------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YACP---R 449 (729)
Q Consensus 395 ------------------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~d~P---~ 449 (729)
-.++.+||++-+--..-+.-.|..|-+++|+||..++.|||+|.-++|+- ||-- |
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 23778999999988888888999999999999999999999987665552 2211 1
Q ss_pred -ChhhHHHHhcccccCCC--ccEEEEEeccC-cHHHHHHHH
Q 004808 450 -DLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIA 486 (729)
Q Consensus 450 -s~~~yiQriGRagR~G~--~G~~i~l~~~~-d~~~l~~i~ 486 (729)
+.-.|+|+.|||||.|. .|.||+++++. +....+.+.
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 56789999999999885 59999998864 444444444
No 107
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.8e-24 Score=235.00 Aligned_cols=337 Identities=19% Similarity=0.209 Sum_probs=224.4
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 130 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
+.++..|.. .+.|+|++++.|+.. +...|+...+|.|||.+. +..|..|+.... .. ..+|||||.
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k-~~-~paLIVCP~ 264 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK-LT-KPALIVCPA 264 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc-cc-CceEEEccH
Confidence 456666633 578999999999875 567999999999999873 555555555432 22 459999997
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEecCCChH--------HHHH-----HHhcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK--------MQET-----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 206 reLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~--------~~~~-----~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.+..||...+..| ++.++|.+++|..+.. .... .......|+|+|+..+.-. ...+.-..|
T Consensus 265 -Tii~qW~~E~~~w--~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W 338 (923)
T KOG0387|consen 265 -TIIHQWMKEFQTW--WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILW 338 (923)
T ss_pred -HHHHHHHHHHHHh--CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---Ccccccccc
Confidence 4668888888876 3678888888876521 1111 1223467999999887542 123445678
Q ss_pred eEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc-chhHHHHHHHh-cC----------------CCeEEecCC
Q 004808 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL-TEDVDELIKLS-LT----------------KPLRLSADP 334 (729)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl-~~~v~~l~~~~-l~----------------~p~~i~~~~ 334 (729)
+++|+||+|++-|.. ..+...+..++. .+.|++|.|+ .+.+.++..++ +. .|+......
T Consensus 339 ~y~ILDEGH~IrNpn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggya 415 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYA 415 (923)
T ss_pred cEEEecCcccccCCc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccC
Confidence 999999999987753 333333444433 3445556554 33333332221 00 011100000
Q ss_pred CC----------------------------------CCCCCceeEEEEe-------------------------------
Q 004808 335 SA----------------------------------KRPSTLTEEVVRI------------------------------- 349 (729)
Q Consensus 335 ~~----------------------------------~~~~~l~~~~~~~------------------------------- 349 (729)
.. ..|. -...++.+
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~-K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~ 494 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPK-KEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLS 494 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCC-ccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCcccee
Confidence 00 0000 00000000
Q ss_pred -----------------------------ehhhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHh-hcCCce
Q 004808 350 -----------------------------RRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFG-LAALKA 397 (729)
Q Consensus 350 -----------------------------~~~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~-~~~~~~ 397 (729)
.......+..++..++.. ..+.++|+|..++.+...|..+|. ..++++
T Consensus 495 Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysy 574 (923)
T KOG0387|consen 495 GIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSY 574 (923)
T ss_pred chHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceE
Confidence 001122334445555442 236799999999999999999999 689999
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCce--EEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCcc--EEEEE
Q 004808 398 AELHGNLTQAQRLEALELFRKQHVD--FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG--YAVTF 473 (729)
Q Consensus 398 ~~lhg~~~~~~R~~~l~~F~~g~~~--vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G--~~i~l 473 (729)
+.+.|.++...|..+++.|+++..- +|++|.+.+.|+|+.+++.||.|||.|||..-.|..-|+.|.|+.- .+|.|
T Consensus 575 lRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 575 LRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred EEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 9999999999999999999988643 7889999999999999999999999999999999999999999764 45556
Q ss_pred eccCc---HHHHHHHHH
Q 004808 474 VTDND---RSLLKAIAK 487 (729)
Q Consensus 474 ~~~~d---~~~l~~i~~ 487 (729)
++... .-+.++|.+
T Consensus 655 ~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 655 MTAGTIEEKIYHRQIFK 671 (923)
T ss_pred ecCCcHHHHHHHHHHHH
Confidence 66654 334444443
No 108
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2e-24 Score=260.67 Aligned_cols=305 Identities=20% Similarity=0.254 Sum_probs=195.1
Q ss_pred CCcHHHHHHHHHHhc-----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 147 KPTPIQAACIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~-----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.|+++|.++|..+.. .+.+|++++||||||.++ +.++.+++... ...+||||+|+++|+.|+.+.|..+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~---~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK---RFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC---ccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 589999999977753 367999999999999874 55555555432 234799999999999999999887532
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc----CccCCCCeeEEEEeCcchhhc---------CC-
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLE---------LG- 287 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~----~~~~l~~i~~lVvDEah~ll~---------~g- 287 (729)
.....+..+++..... .........|+|+|+..|...+... ..+.+..+++|||||||+-.. .+
T Consensus 489 ~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 EGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 2221111122211111 1112334789999999997765321 124578899999999999531 01
Q ss_pred -----hHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCe---------------------EEecCCCC-----
Q 004808 288 -----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL---------------------RLSADPSA----- 336 (729)
Q Consensus 288 -----f~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~---------------------~i~~~~~~----- 336 (729)
+...+..++..+. .-.|+|||||......+ +..|+ .+......
T Consensus 567 ~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~----FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEI----FGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred chhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHH----hCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 2345666666553 35799999996433222 12222 11110000
Q ss_pred CCCCCc------eeEE--EEeehh--hhh---hH-------H----HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh
Q 004808 337 KRPSTL------TEEV--VRIRRM--REV---NQ-------E----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (729)
Q Consensus 337 ~~~~~l------~~~~--~~~~~~--~~~---~k-------~----~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~ 392 (729)
.....+ ...+ ..+... ... .+ . ..+...+....++++||||.+...++.+...|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000000 0000 000000 000 00 0 0111122223357999999999999988887754
Q ss_pred c------CC---ceeeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccc
Q 004808 393 A------AL---KAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (729)
Q Consensus 393 ~------~~---~~~~lhg~~~~~~R~~~l~~F~~g~~-~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRag 462 (729)
. ++ .+..+||.++ ++..+++.|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 2 22 4556888876 46789999999987 69999999999999999999999999999999999999999
Q ss_pred cCC
Q 004808 463 RAG 465 (729)
Q Consensus 463 R~G 465 (729)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 953
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=1.8e-24 Score=210.13 Aligned_cols=165 Identities=37% Similarity=0.568 Sum_probs=142.1
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEE
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~ 228 (729)
||+|.++++.+..|+++++.||||+|||++|++|+++.+... . ..++||++|+++|+.|+.+.+..+....++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~---~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K---DARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S---SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C---CceEEEEeecccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988765 2 227999999999999999999999888788999
Q ss_pred EEecCCChH-HHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCc--CceE
Q 004808 229 LVVGGLSTK-MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--RRQT 305 (729)
Q Consensus 229 ~~~gg~~~~-~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~--~~q~ 305 (729)
.++|+.... .....+...++|+|+||++|...+.... ..+.++++|||||+|.+..+++...+..++..+.. ..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhccccccc-cccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999998855 4444455679999999999999998743 36677999999999999998889989888888743 5899
Q ss_pred EEEecccchhHHH
Q 004808 306 MLFSATLTEDVDE 318 (729)
Q Consensus 306 il~SATl~~~v~~ 318 (729)
+++|||++..+..
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999966654
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.7e-23 Score=210.51 Aligned_cols=312 Identities=20% Similarity=0.244 Sum_probs=216.1
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
++||.|+.+-..++. ..+.|++|.||+|||-+ +.+.++..+.. +.+|.|..|+...|..++..++. .|
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-----G~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-----GGRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-----CCeEEEecCcccchHHHHHHHHH--hh
Confidence 689999988777665 57999999999999987 46666665543 45799999999999999999887 45
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcC
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~ 302 (729)
.+..+.+++|+..... ...+||+|...|+.+-. .++++||||+|..--..-......+-+.....
T Consensus 169 ~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 6788899999876542 26899999999987543 35689999999865211112222333444556
Q ss_pred ceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCC-CCCceeEEEEeehhh-hhhH---HHHHHHHhh--ccCCCeEEE
Q 004808 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMR-EVNQ---EAVLLSLCS--KTFTSKVII 375 (729)
Q Consensus 303 ~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~-~~~l~~~~~~~~~~~-~~~k---~~~l~~l~~--~~~~~~vLI 375 (729)
--+|++|||++..+..-+...-..+ +.+...... |-.+.. ++.+.... ...+ ...|...+. ...+.++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpvPk-f~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPVPK-FVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCCCc-eEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 6789999999988765554322211 222111111 222222 23332211 1111 112333333 234579999
Q ss_pred EeCcHHHHHHHHHHHhh-c-CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCC--CCh
Q 004808 376 FSGTKQAAHRLKILFGL-A-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP--RDL 451 (729)
Q Consensus 376 F~~s~~~~~~l~~~L~~-~-~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P--~s~ 451 (729)
|+++....+.++..|.. . ...++..|+. ...|.+.++.|++|+..+||+|.+++||+.+|+|+++|.-.-. .+-
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 99999999999999943 3 3455777875 4578999999999999999999999999999999997643222 477
Q ss_pred hhHHHHhcccccCC--CccEEEEEeccCcHHHHHHHH
Q 004808 452 TSYVHRVGRTARAG--REGYAVTFVTDNDRSLLKAIA 486 (729)
Q Consensus 452 ~~yiQriGRagR~G--~~G~~i~l~~~~d~~~l~~i~ 486 (729)
+..+|..||+||.- -.|.++.|-..-...+.+++.
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 89999999999933 347777776666666665543
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=231.80 Aligned_cols=313 Identities=16% Similarity=0.149 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HhhccC
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTD 224 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~-l~~~~~ 224 (729)
-...++-.+.+.++-.++-+||.|.||||||.+....+.+.-+.. .+.++-+..|.|..|..++..+.. +....|
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 345677788888888899999999999999997433333333322 233589999999999887765543 322233
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch-hhcCChHHHHHHHHHhcCcCc
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSAEIHELVRLCPKRR 303 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~-ll~~gf~~~i~~il~~~~~~~ 303 (729)
..|++-+.- +.......-|-++|.|+|+..+.. ..+|.++++|||||||. -+..+..-.+..=+..+.+..
T Consensus 340 ~eVGYsIRF------EdcTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 340 HEVGYSIRF------EDCTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred cccceEEEe------ccccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 333322211 111123356889999999998876 57899999999999995 333322222222222334678
Q ss_pred eEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeeh-hhhhhHHHHHHHHhhccCCCeEEEEeCcHHH
Q 004808 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-MREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 382 (729)
Q Consensus 304 q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~ 382 (729)
.+++.|||+..+- ...++.+...+.+. ....|..+ ++...+. .+.......++.++...+.+-+|||....+.
T Consensus 412 KllIsSAT~DAek---FS~fFDdapIF~iP-GRRyPVdi--~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATMDAEK---FSAFFDDAPIFRIP-GRRYPVDI--FYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeeccccCHHH---HHHhccCCcEEecc-Ccccceee--ecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 8999999997432 23444443333332 22122111 1111111 1111222234445556677899999999998
Q ss_pred HHHHHHHHhh----c-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeC-------
Q 004808 383 AHRLKILFGL----A-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA------- 446 (729)
Q Consensus 383 ~~~l~~~L~~----~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d------- 446 (729)
++.....|.. + .+-+++||+++|...+..+++.-..|-.+|++||++|+..|.|+||.+||.-+
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 8877665542 2 35688999999999999999999999999999999999999999999999533
Q ss_pred -C----------CCChhhHHHHhcccccCCCccEEEEEeccC
Q 004808 447 -C----------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (729)
Q Consensus 447 -~----------P~s~~~yiQriGRagR~G~~G~~i~l~~~~ 477 (729)
+ |-|-++-.||.||+||.| +|.|+.+++.+
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 2 335567789999999987 99999999954
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.92 E-value=7.8e-23 Score=237.63 Aligned_cols=189 Identities=20% Similarity=0.290 Sum_probs=145.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC-
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~- 447 (729)
.+.++||||+|+..+++|..+|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhc-------cccchhhhhhhhHHHHHHHHHHHHHH
Q 004808 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG-------SKLKSRIVAEQSITKWSKIIEQMEDQ 516 (729)
Q Consensus 448 ----P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~ 516 (729)
|.+...|+||+|||||. ..|.|++|++..+..+.+.+.+... ......++|...+..|...++.+++.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIRDILDSVYKK 603 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHhhhhh
Confidence 78999999999999995 7899999999766666665544321 12334566666666666666433321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHHh
Q 004808 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIEK 578 (729)
Q Consensus 517 ~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 578 (729)
.++.+ .....++..+...|.+.+... |+. ++..++.+..|+.
T Consensus 604 --~~~~~--------------~~~~~~~~~l~~~M~~aa~~l~fE~----Aa~~Rd~i~~l~~ 646 (652)
T PRK05298 604 --DKLSK--------------KELEKLIKELEKQMKEAAKNLEFEE----AARLRDEIKELKE 646 (652)
T ss_pred --ccCCH--------------HHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHH
Confidence 11111 123344455555555555555 665 8888888877763
No 113
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=2e-23 Score=235.80 Aligned_cols=342 Identities=21% Similarity=0.247 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 131 NLSRPLLRACEALGYSKPTPIQAACI--PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~pt~iQ~~~i--~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
+++....-.....|...++.+|.+|+ |.++.++++|+.+||+.|||++.-+-++..++.+.. .++.++|....
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr-----~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-----NVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh-----ceeEecceeeh
Confidence 44444555566779999999999997 778899999999999999999999999988887654 38999999888
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc-CccCCCCeeEEEEeCcchhhcCC
Q 004808 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRLLELG 287 (729)
Q Consensus 209 a~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~-~~~~l~~i~~lVvDEah~ll~~g 287 (729)
+..-...+..++...|+.+..++|...... .....+|.|||-++-..++... ..-.+..+++|||||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 887778888888888999888776655432 2344689999988755444321 02347789999999999999888
Q ss_pred hHHHHHHHHHhc-----CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH----
Q 004808 288 FSAEIHELVRLC-----PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE---- 358 (729)
Q Consensus 288 f~~~i~~il~~~-----~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~---- 358 (729)
....+..++..+ ....|+|+||||+++. .++..++..-+.. ...+|..+..+...-.......+.
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~----t~fRPv~L~E~ik~G~~i~~~~r~~~lr 431 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYT----TRFRPVPLKEYIKPGSLIYESSRNKVLR 431 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhhee----cccCcccchhccCCCcccccchhhHHHH
Confidence 777666665432 2346899999999853 1222222221111 111222222111000000000011
Q ss_pred ---------------HHHHHHhhcc--CCCeEEEEeCcHHHHHHHHHHHh------------------------------
Q 004808 359 ---------------AVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFG------------------------------ 391 (729)
Q Consensus 359 ---------------~~l~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~------------------------------ 391 (729)
..+..+|... .+.++||||+++..|+.++..+.
T Consensus 432 ~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~ 511 (1008)
T KOG0950|consen 432 EIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPG 511 (1008)
T ss_pred HhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCc
Confidence 1222233222 23469999999998887764431
Q ss_pred --------hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeC---C-CCChhhHHHHhc
Q 004808 392 --------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA---C-PRDLTSYVHRVG 459 (729)
Q Consensus 392 --------~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d---~-P~s~~~yiQriG 459 (729)
...+.++++|.+++..+|..+-..|+.|...||+||+.++-|+++|..+++|-.- . +.+...|.|++|
T Consensus 512 ~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~G 591 (1008)
T KOG0950|consen 512 ILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVG 591 (1008)
T ss_pred ccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhh
Confidence 1124588999999999999999999999999999999999999999988887432 2 236779999999
Q ss_pred ccccCCC--ccEEEEEeccCcHHHHHHHHH
Q 004808 460 RTARAGR--EGYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 460 RagR~G~--~G~~i~l~~~~d~~~l~~i~~ 487 (729)
||||+|- .|.+++++...+..++..+..
T Consensus 592 RAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 592 RAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 9999884 499999999999877776653
No 114
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=1.1e-23 Score=241.61 Aligned_cols=329 Identities=19% Similarity=0.249 Sum_probs=220.1
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 146 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
..++.+|-+.++|++. ++++|+...+|.|||++- +..|..|+.... ..+| .|||+|...+.. |...+..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~-~~gp-flvvvplst~~~-W~~ef~~w-- 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ-IHGP-FLVVVPLSTITA-WEREFETW-- 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh-ccCC-eEEEeehhhhHH-HHHHHHHH--
Confidence 5789999999999986 689999999999999763 444554444332 2233 899999877654 44555554
Q ss_pred ccCceEEEEecCCChHHHHHHH----hc-----CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHH
Q 004808 222 FTDIRCCLVVGGLSTKMQETAL----RS-----MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l----~~-----~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i 292 (729)
+.+++++++|........+.. .. .++++++|++.++.--. .+.--.|.+++|||||+|-|.. ..+
T Consensus 443 -~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN~~--~~l 516 (1373)
T KOG0384|consen 443 -TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKNDE--SKL 516 (1373)
T ss_pred -hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCchH--HHH
Confidence 478889999987655444332 12 37899999998864322 2223367899999999998642 233
Q ss_pred HHHHHhcCcCceEEEEecccc-hhHHHHHHHh-cCCCeEEec---------------------------------CCCCC
Q 004808 293 HELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRLSA---------------------------------DPSAK 337 (729)
Q Consensus 293 ~~il~~~~~~~q~il~SATl~-~~v~~l~~~~-l~~p~~i~~---------------------------------~~~~~ 337 (729)
...+..+.... .|++|.|+- +++.++..+. +..|..+.. +....
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 33344444333 356666654 4455443321 111111000 00000
Q ss_pred CCCCceeEEEEeeh-------------------------------------------------hhh--------hhHHHH
Q 004808 338 RPSTLTEEVVRIRR-------------------------------------------------MRE--------VNQEAV 360 (729)
Q Consensus 338 ~~~~l~~~~~~~~~-------------------------------------------------~~~--------~~k~~~ 360 (729)
.|+. ...++++.- ... ......
T Consensus 596 lp~k-~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 596 LPPK-EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCC-cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 1111 111111110 000 000112
Q ss_pred HHHHh-------------h--ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC---Cce
Q 004808 361 LLSLC-------------S--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVD 422 (729)
Q Consensus 361 l~~l~-------------~--~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g---~~~ 422 (729)
|..++ . ...+++||||.+...+.+.|..||...++++-.|.|.+..+.|..++++|+.- .+-
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 22221 1 23468999999999999999999999999999999999999999999999853 567
Q ss_pred EEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCc--cEEEEEeccCc--HHHHHHHHHH
Q 004808 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAIAKR 488 (729)
Q Consensus 423 vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~--G~~i~l~~~~d--~~~l~~i~~~ 488 (729)
+|+||.+++.|||+..+++||+||..|||+.-+|..-||+|.|+. -.+|.|++.+. ..++......
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 45677788763 4555554443
No 115
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=6.1e-23 Score=222.46 Aligned_cols=311 Identities=17% Similarity=0.164 Sum_probs=208.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH-hhcc
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFT 223 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l-~~~~ 223 (729)
+-.....+.+.+..+-.++-||+.+.||||||.+....+++.-+. ..+.+.+..|.|..|..++..+..- ....
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~-----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA-----DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc-----cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 334456677777778788889999999999999754444444332 2346899999999999887766542 2223
Q ss_pred CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch-hhcCChHHHHHHHHHhcCcC
Q 004808 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~-ll~~gf~~~i~~il~~~~~~ 302 (729)
|-.|++.+.-.+ .-....-|-++|.|.|+...-. +-.|..+++||+||||. -+|.+..-.+...+-.-...
T Consensus 429 G~~VGYsIRFEd------vT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 429 GDTVGYSIRFED------VTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRD 500 (1042)
T ss_pred ccccceEEEeee------cCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhcc
Confidence 433333322111 1123356889999999876554 45689999999999995 44554444444444444567
Q ss_pred ceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH---HHhhccCCCeEEEEeCc
Q 004808 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL---SLCSKTFTSKVIIFSGT 379 (729)
Q Consensus 303 ~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~---~l~~~~~~~~vLIF~~s 379 (729)
..+|+.||||.. ..+...+-+.|. +.+... ..|..+ .......+......+. .++.....+.+|||.+.
T Consensus 501 lKliVtSATm~a--~kf~nfFgn~p~-f~IpGR-TyPV~~----~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 501 LKLIVTSATMDA--QKFSNFFGNCPQ-FTIPGR-TYPVEI----MYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred ceEEEeeccccH--HHHHHHhCCCce-eeecCC-ccceEE----EeccCchHHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 889999999964 334433333333 332211 112111 1111111222222222 23344556889999998
Q ss_pred HHHHHHHHHHHh----h------cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC--
Q 004808 380 KQAAHRLKILFG----L------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC-- 447 (729)
Q Consensus 380 ~~~~~~l~~~L~----~------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~-- 447 (729)
.+.++-.+..+. . .++.++.|++.|+..-+.++++.-..|..+|+|||++|+..|.|||+.+||..++
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 876665544332 2 2678999999999999999999999999999999999999999999999996443
Q ss_pred ----------------CCChhhHHHHhcccccCCCccEEEEEeccC
Q 004808 448 ----------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (729)
Q Consensus 448 ----------------P~s~~~yiQriGRagR~G~~G~~i~l~~~~ 477 (729)
|-|-+.--||.|||||.| +|.||.+|+..
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 345566779999999987 99999999974
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1e-21 Score=222.75 Aligned_cols=280 Identities=25% Similarity=0.304 Sum_probs=193.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|| .|+..|......++.|+.+-+.||||.|||.--++.. ++... .+.+++||+||+.|+.|+++.+.+++..
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~s---l~~a~---kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMS---LYLAK---KGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHH---HHHHh---cCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 355 8999999999999999999999999999996432222 22221 2347999999999999999999999876
Q ss_pred cC-ceEEE-EecCCChHHHHHH----HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-----------
Q 004808 223 TD-IRCCL-VVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (729)
Q Consensus 223 ~~-i~v~~-~~gg~~~~~~~~~----l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~----------- 285 (729)
.+ ..+.+ +++..+....... -.++.||+|+|...|...+..-.. -++++|++|.+|.++-
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhccccHHHHHHH
Confidence 55 44444 5555555443332 345799999999888776654221 3678999999999763
Q ss_pred CChHHHHH-------HHHHh------------------------cCcCceEEEEecccchhHH--HHHHHhcCCCeEEec
Q 004808 286 LGFSAEIH-------ELVRL------------------------CPKRRQTMLFSATLTEDVD--ELIKLSLTKPLRLSA 332 (729)
Q Consensus 286 ~gf~~~i~-------~il~~------------------------~~~~~q~il~SATl~~~v~--~l~~~~l~~p~~i~~ 332 (729)
.||..... .+... -.+.-++|+.|||..+.-. .+.+..+.- .+
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----ev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----cc
Confidence 23333211 11111 1134588999999875432 222333322 11
Q ss_pred CCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCc---HHHHHHHHHHHhhcCCceeeccCCCCHHHH
Q 004808 333 DPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT---KQAAHRLKILFGLAALKAAELHGNLTQAQR 409 (729)
Q Consensus 333 ~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s---~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 409 (729)
........++.+.++.. .....+..+++.. +.+.|||++. .+.++.++.+|...|+++..+|+. .
T Consensus 305 G~~~~~LRNIvD~y~~~------~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 305 GSGGEGLRNIVDIYVES------ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CccchhhhheeeeeccC------ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 11111222333333322 2223344454443 5689999999 999999999999999999999983 3
Q ss_pred HHHHHHHhcCCceEEEEc----CccccccCCCC-ccEEEEeCCC
Q 004808 410 LEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACP 448 (729)
Q Consensus 410 ~~~l~~F~~g~~~vLVaT----d~~~rGlDi~~-v~~VI~~d~P 448 (729)
.+.++.|..|++++||++ .++-||||+|. ++++|+|+.|
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999975 57889999996 8999999998
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5.3e-22 Score=228.78 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=109.9
Q ss_pred hHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 004808 356 NQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (729)
Q Consensus 356 ~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rG 433 (729)
.+...+...+.. ..+.++||||+|+..++.|..+|...|+++..||+ .+.+|...+..|..+...|+|||++|+||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 455556655533 35789999999999999999999999999999997 68899999999999999999999999999
Q ss_pred cCCC---CccE-----EEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 434 LDII---GVQT-----VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 434 lDi~---~v~~-----VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
+||+ +|.. ||+++.|.+...|.|++|||||.|.+|.+++|++..|.-+
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9999 5644 4999999999999999999999999999999999887544
No 118
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=6.2e-22 Score=228.40 Aligned_cols=315 Identities=17% Similarity=0.184 Sum_probs=229.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH-hhccCce
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIR 226 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l-~~~~~i~ 226 (729)
.+..+..++..+.+.+.++++|.||+|||++....+|+...... ...++++..|+|--|.-+++.+..- +...+-.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 46778888999999999999999999999998888888877665 4567999999999988888877543 2224555
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceE
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQT 305 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~ 305 (729)
|++-++..+. ......+++||.|.|++.|.. ...+..+..||+||+|.-. +.+|.-.+...+-...+..++
T Consensus 251 VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 251 VGYQVRLESK------RSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeEEEeeecc------cCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 5555554332 122367999999999999987 5668999999999999644 666666665555555678999
Q ss_pred EEEecccchhHHHHHHHhcCCCeEEecCCCCCCC----------------CCceeEE-----------EE--eehhhhhh
Q 004808 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP----------------STLTEEV-----------VR--IRRMREVN 356 (729)
Q Consensus 306 il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~----------------~~l~~~~-----------~~--~~~~~~~~ 356 (729)
|+||||+.. +....++.....+.+....... ....+.. +. ........
T Consensus 323 ILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 999999973 3334444443333332111000 0000000 00 00001111
Q ss_pred HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 004808 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (729)
Q Consensus 357 k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~ 429 (729)
-...+..++.....+.+|||.++...+..+...|... .+-+.++|+.|+..++..++.....|..+|+++|++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 2234555666767899999999999999999988642 256788999999999999999999999999999999
Q ss_pred cccccCCCCccEEEE--------eCCCC----------ChhhHHHHhcccccCCCccEEEEEeccC
Q 004808 430 AARGLDIIGVQTVIN--------YACPR----------DLTSYVHRVGRTARAGREGYAVTFVTDN 477 (729)
Q Consensus 430 ~~rGlDi~~v~~VI~--------~d~P~----------s~~~yiQriGRagR~G~~G~~i~l~~~~ 477 (729)
|+.+|.|++|-+||. ||+-. +-..-.||.|||||. .+|.||.+++..
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 999999999999995 55443 334456999999996 699999999964
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=6.6e-20 Score=220.42 Aligned_cols=330 Identities=19% Similarity=0.234 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~----~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
+++.+...+...||. ++|.|.+.+. .+..|+++++.||||+|||++|++|++..+. . +.+|||.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-----~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-----EKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-----CCeEEEEeCcHH
Confidence 345677788888997 7999997665 6667899999999999999999999987654 1 236999999999
Q ss_pred HHHHHHH-HHHHHhhccC--ceEEEEecCCChH---H------------H------------------------------
Q 004808 208 LAVQVHS-MIEKIAQFTD--IRCCLVVGGLSTK---M------------Q------------------------------ 239 (729)
Q Consensus 208 La~Q~~~-~~~~l~~~~~--i~v~~~~gg~~~~---~------------~------------------------------ 239 (729)
|..|+.. .+..+.+..+ +++.++.|+...- . .
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5665555434 7777777653210 0 0
Q ss_pred --HHH------------------------HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC-------
Q 004808 240 --ETA------------------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL------- 286 (729)
Q Consensus 240 --~~~------------------------l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~------- 286 (729)
+.. ....+||||+...-|+..+.... ..+....+|||||||+|.+.
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 000 01226899999998888775432 23456689999999996420
Q ss_pred Ch-----HHH---H----------------------------------------------------------HH---HHH
Q 004808 287 GF-----SAE---I----------------------------------------------------------HE---LVR 297 (729)
Q Consensus 287 gf-----~~~---i----------------------------------------------------------~~---il~ 297 (729)
.+ ... + .. .+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 00 000 0 00 000
Q ss_pred h-----------c-------------------------------------CcCceEEEEecccch--hHHHHHH-HhcCC
Q 004808 298 L-----------C-------------------------------------PKRRQTMLFSATLTE--DVDELIK-LSLTK 326 (729)
Q Consensus 298 ~-----------~-------------------------------------~~~~q~il~SATl~~--~v~~l~~-~~l~~ 326 (729)
. + +....+|++|||++. ....+.. +.+..
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 012467899999973 2333322 22222
Q ss_pred CeEEecCCCCCCCCCc-eeEEEEeeh----h----hhh---hHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh--
Q 004808 327 PLRLSADPSAKRPSTL-TEEVVRIRR----M----REV---NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-- 392 (729)
Q Consensus 327 p~~i~~~~~~~~~~~l-~~~~~~~~~----~----~~~---~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-- 392 (729)
.......++ |-.. .+..+.+.. . ... .-...+..++.. .++++|||++|+...+.+...|..
T Consensus 623 ~~~~~~~~s---pf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 623 VHFNTIEPT---PLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred cccceecCC---CCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 211111111 1111 111111110 0 000 111223333333 457999999999999999999875
Q ss_pred --cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCcc--EEEEeCCCCC-h----------------
Q 004808 393 --AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ--TVINYACPRD-L---------------- 451 (729)
Q Consensus 393 --~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~--~VI~~d~P~s-~---------------- 451 (729)
.++.+ +..+.. ..|..+++.|+.|+..||+||+.+++|||+|+.. +||...+|.. |
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 23333 333333 5788999999999999999999999999999865 5777777742 1
Q ss_pred -------------hhHHHHhcccccCCCccEEEEEecc
Q 004808 452 -------------TSYVHRVGRTARAGREGYAVTFVTD 476 (729)
Q Consensus 452 -------------~~yiQriGRagR~G~~G~~i~l~~~ 476 (729)
..+.|.+||.-|.....-++++++.
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 2235899999997654334444444
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=1.2e-20 Score=222.56 Aligned_cols=330 Identities=20% Similarity=0.193 Sum_probs=217.2
Q ss_pred CcHHHHHHHHHHhcC---C-CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 148 PTPIQAACIPLALTG---R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g---~-dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
+.+.|..++..++.. . .+++.||||+|||.+.+++++..+... . ....+++.+.|++.+..++++.+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~-~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-I-KLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-c-cccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 488999999888874 4 788999999999999988888776553 1 245689999999999999999999876654
Q ss_pred CceEEEEecCCChHHHHHH-----H---------hcCCCeEEECchHHHHHHhccCccC---CCCeeEEEEeCcchhhcC
Q 004808 224 DIRCCLVVGGLSTKMQETA-----L---------RSMPDIVVATPGRMIDHLRNSMSVD---LDDLAVLILDEADRLLEL 286 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~~-----l---------~~~~dIvI~TP~~L~~~l~~~~~~~---l~~i~~lVvDEah~ll~~ 286 (729)
++....++|.......... . .....++++||..+.........+. +-..+++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 4433323333222111110 0 0113455566555544222211111 123468999999998765
Q ss_pred ChHHHHHHHHHhc-CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEee-hhhhhhHH--HHHH
Q 004808 287 GFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQE--AVLL 362 (729)
Q Consensus 287 gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~k~--~~l~ 362 (729)
.....+..++..+ .....+|++|||+|+.+.+.+...+.....+....... + ......+... ........ ....
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC-P-KEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc-c-cccccccccccchhhhhhhhHhhhh
Confidence 3333333333333 24677999999999999998888776654443321100 0 0000000000 00001110 1111
Q ss_pred -HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh----cCCceEEEEcCccccccCCC
Q 004808 363 -SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDII 437 (729)
Q Consensus 363 -~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~----~g~~~vLVaTd~~~rGlDi~ 437 (729)
.......+.+++|.|||...|..+...|+..+..+..|||.+...+|.+.++.+. .+...|+|||++.+.|+||.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 1112334689999999999999999999988888999999999999988887554 56788999999999999994
Q ss_pred CccEEEEeCCCCChhhHHHHhcccccCC--CccEEEEEeccCcHHHHHH
Q 004808 438 GVQTVINYACPRDLTSYVHRVGRTARAG--REGYAVTFVTDNDRSLLKA 484 (729)
Q Consensus 438 ~v~~VI~~d~P~s~~~yiQriGRagR~G--~~G~~i~l~~~~d~~~l~~ 484 (729)
.+++|-=-. .+.+.+||.||++|-| ..|.++++...........
T Consensus 512 -fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~ 557 (733)
T COG1203 512 -FDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKY 557 (733)
T ss_pred -cCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhh
Confidence 777764433 4889999999999998 5788888877654444333
No 121
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.85 E-value=3.6e-20 Score=212.05 Aligned_cols=322 Identities=18% Similarity=0.214 Sum_probs=209.8
Q ss_pred CcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCC---CCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 148 pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~---~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
++.||++.+.|+.- +-+.|+|..+|.|||++.+-.+....+.+. ....+...|||||. .|+--|..++.+|+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 57899999988642 348999999999999975433333333331 11233448999996 68888889999887
Q ss_pred hccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC
Q 004808 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (729)
Q Consensus 221 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~ 300 (729)
.+ +++..++|+.......+.-.++.+|+|++|..+.+-+.. +.-..|-++|+||.|.|-|. ...+...++.+.
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 65 777888888776665555566789999999998754432 11235669999999998764 445555555555
Q ss_pred cCceEEEEeccc-chhHHHHHHHh---c--------------CCCeEEecCC----------------------------
Q 004808 301 KRRQTMLFSATL-TEDVDELIKLS---L--------------TKPLRLSADP---------------------------- 334 (729)
Q Consensus 301 ~~~q~il~SATl-~~~v~~l~~~~---l--------------~~p~~i~~~~---------------------------- 334 (729)
.+.+ +++|+|+ .+++.++..++ | .+|+.-.-++
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444 5566664 33333332211 0 0010000000
Q ss_pred -----CCCCCCCcee-E--------------------------------------------------------EEEee--
Q 004808 335 -----SAKRPSTLTE-E--------------------------------------------------------VVRIR-- 350 (729)
Q Consensus 335 -----~~~~~~~l~~-~--------------------------------------------------------~~~~~-- 350 (729)
-...|+.+.| + ++..+
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 0000000000 0 00000
Q ss_pred ------------------hhhhhhHHHHHHHHh---hc-------------cCCCeEEEEeCcHHHHHHHHHHHhhc---
Q 004808 351 ------------------RMREVNQEAVLLSLC---SK-------------TFTSKVIIFSGTKQAAHRLKILFGLA--- 393 (729)
Q Consensus 351 ------------------~~~~~~k~~~l~~l~---~~-------------~~~~~vLIF~~s~~~~~~l~~~L~~~--- 393 (729)
......+...|..++ .- ..++++||||+-+.+++.+.+-|-..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 001111222232222 11 13579999999999999998766443
Q ss_pred CCceeeccCCCCHHHHHHHHHHHhcC-CceEEE-EcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccE--
Q 004808 394 ALKAAELHGNLTQAQRLEALELFRKQ-HVDFLI-ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY-- 469 (729)
Q Consensus 394 ~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLV-aTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~-- 469 (729)
.+.+..|.|..++.+|.++.++|+++ .++||+ +|-+++-|||+.|+++||+++-.|||..-+|.+.||+|.|++-.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 23455899999999999999999999 678755 78899999999999999999999999999999999999997644
Q ss_pred EEEEeccCc
Q 004808 470 AVTFVTDND 478 (729)
Q Consensus 470 ~i~l~~~~d 478 (729)
+|.|++...
T Consensus 1447 VyRlItrGT 1455 (1549)
T KOG0392|consen 1447 VYRLITRGT 1455 (1549)
T ss_pred eeeehhccc
Confidence 444555543
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=5.3e-18 Score=191.10 Aligned_cols=320 Identities=21% Similarity=0.223 Sum_probs=216.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .|+++|--+.-.++.|+ |+.+.||+|||++..+|++...+.. ..|.|++|+--||.|-++++..+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G------~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQG------RRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcC------CCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 455 58999999998888874 7899999999999999988776543 34899999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhcc-----CccCCCCeeEEEEeCcchhh-cCC--------
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLL-ELG-------- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~ll-~~g-------- 287 (729)
.|++++++.++.+........ .+||+++|..-| .++|+.. .......+.++||||+|.+| +..
T Consensus 146 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 999999999987766444433 579999998764 3334332 12235678899999999854 100
Q ss_pred ------hHHHHHHHHHhcCc------------------------------------------------------------
Q 004808 288 ------FSAEIHELVRLCPK------------------------------------------------------------ 301 (729)
Q Consensus 288 ------f~~~i~~il~~~~~------------------------------------------------------------ 301 (729)
....+..+...+..
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 00011111110000
Q ss_pred ----------------------------------------------------------CceEEEEecccchhHHHHHHHh
Q 004808 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 302 ----------------------------------------------------------~~q~il~SATl~~~v~~l~~~~ 323 (729)
...+.+||+|......++...+
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 1245666777665555444433
Q ss_pred cCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHh-h-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeecc
Q 004808 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC-S-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (729)
Q Consensus 324 l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~-~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (729)
-. ++. ..|.. .|..-...--.+.. ....+...+..-+ . ...+.+|||.|.|....+.|..+|...|++...|+
T Consensus 384 ~l-~Vv--~IPtn-kp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 384 DL-GVS--VIPPN-KPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred CC-cEE--ECCCC-CCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 22 211 11111 11110000001111 1122333333222 2 23578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCC-ceEEEEcCccccccCCC---------------CccEEEEeCCCCChhhHHHHhcccccCC
Q 004808 402 GNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDII---------------GVQTVINYACPRDLTSYVHRVGRTARAG 465 (729)
Q Consensus 402 g~~~~~~R~~~l~~F~~g~-~~vLVaTd~~~rGlDi~---------------~v~~VI~~d~P~s~~~yiQriGRagR~G 465 (729)
+.-...+ ..++. ..|+ -.|.|||++|+||.||. |==|||-...|.|...-.|-.||+||.|
T Consensus 459 Ak~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 459 AKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred cCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 8744333 22222 2443 45999999999999996 3457999999999999999999999999
Q ss_pred CccEEEEEeccCcHHH
Q 004808 466 REGYAVTFVTDNDRSL 481 (729)
Q Consensus 466 ~~G~~i~l~~~~d~~~ 481 (729)
.+|.+..|++-.|.-+
T Consensus 536 DpGss~f~lSleDdl~ 551 (764)
T PRK12326 536 DPGSSVFFVSLEDDVV 551 (764)
T ss_pred CCCceeEEEEcchhHH
Confidence 9999999999877443
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=6.7e-19 Score=201.66 Aligned_cols=320 Identities=22% Similarity=0.279 Sum_probs=208.7
Q ss_pred CCcHHHHHHHHHHhcC----CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g----~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.+.+-|+.++..+... .-.++.|.||||||.+| +.++...+..++ .+|||+|-..|..|+.+.|+..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~Gk-----qvLvLVPEI~Ltpq~~~rf~~r--- 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQGK-----QVLVLVPEIALTPQLLARFKAR--- 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHcCC-----EEEEEeccccchHHHHHHHHHH---
Confidence 5678899999988765 67899999999999998 666666665543 5999999999999999988864
Q ss_pred cCceEEEEecCCChHHHH----HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-----CChHHHHH
Q 004808 223 TDIRCCLVVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-----LGFSAEIH 293 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~----~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-----~gf~~~i~ 293 (729)
.+.++.+++++.+..... ....+...|||+|=--| ...+.++.+|||||=|.-.- +.+...-.
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 358889999998865442 33346689999993222 34588999999999997441 22333334
Q ss_pred HHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh----HHHHHHHHhh-cc
Q 004808 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN----QEAVLLSLCS-KT 368 (729)
Q Consensus 294 ~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~----k~~~l~~l~~-~~ 368 (729)
.+++.-..+.++|+-|||++-+-...+... ..-.+...............++..+...... ....+..+-. -.
T Consensus 341 A~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~ 418 (730)
T COG1198 341 AVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh
Confidence 455555567889999999875544443221 1111111111111101111111111100000 0111111100 01
Q ss_pred CCCeEEEEeCc----------------------------------------------------------------HHHHH
Q 004808 369 FTSKVIIFSGT----------------------------------------------------------------KQAAH 384 (729)
Q Consensus 369 ~~~~vLIF~~s----------------------------------------------------------------~~~~~ 384 (729)
.+..+|||+|. ....+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteriee 498 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEE 498 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHH
Confidence 12333333332 33333
Q ss_pred HHHHHHhhcCCceeeccCCCCHHH--HHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCC------------C
Q 004808 385 RLKILFGLAALKAAELHGNLTQAQ--RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------D 450 (729)
Q Consensus 385 ~l~~~L~~~~~~~~~lhg~~~~~~--R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~------------s 450 (729)
.|..+| .+..+..+.++.+... -...+..|.+|+.+|||.|++++.|+|+|+++.|...|... .
T Consensus 499 eL~~~F--P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 499 ELKRLF--PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHC--CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 444444 2567778888776544 46789999999999999999999999999999988766543 3
Q ss_pred hhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHH
Q 004808 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 451 ~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~ 487 (729)
.+.+.|-.||+||++.+|.+++-....+...++.+..
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 4567899999999999999999988888777776654
No 124
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=4.8e-19 Score=186.41 Aligned_cols=329 Identities=21% Similarity=0.173 Sum_probs=215.2
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
.+.|...+.++...+.++...--..+..+.+.+..+++++-+++.|.||||||.+....++...+... ..|....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-----~~v~CTQ 98 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-----TGVACTQ 98 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----cceeecC
Confidence 56788888898888887765444456667777888888899999999999999975555555544332 3488999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|.|..|++++..... ..++..+--+|-.-. ++.-...+.=+-+||.|.|+....+ +-.+..+++||+||||.-
T Consensus 99 prrvaamsva~RVad---EMDv~lG~EVGysIr--fEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVAD---EMDVTLGEEVGYSIR--FEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHER 171 (699)
T ss_pred chHHHHHHHHHHHHH---Hhccccchhcccccc--ccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhhh
Confidence 999999988765543 233333322222110 0000001111337888888877665 456899999999999963
Q ss_pred -hcCC-hHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-EeehhhhhhHHHH
Q 004808 284 -LELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQEAV 360 (729)
Q Consensus 284 -l~~g-f~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~k~~~ 360 (729)
+..+ ....+..++... +..++|++|||+... .++.++.++..+.+.. ..|..+ ++. .....+.......
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg--~~PvEi--~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG--THPVEI--FYTPEPERDYLEAAIRT 243 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC--CCceEE--EecCCCChhHHHHHHHH
Confidence 2221 222333444444 488999999998532 3345666655555533 222211 111 1122223333445
Q ss_pred HHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc---------CCceeeccCCCCHHHHHHHHHHHhc---C--CceEEEE
Q 004808 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRK---Q--HVDFLIA 426 (729)
Q Consensus 361 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~---g--~~~vLVa 426 (729)
++.++.....+-+|||.++.++++..+..+... .+.+..|| +.++.++++.... | ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEE
Confidence 666666667899999999999988887766522 35677888 3444444443321 2 3579999
Q ss_pred cCccccccCCCCccEEEEeCC------------------CCChhhHHHHhcccccCCCccEEEEEeccC
Q 004808 427 TDVAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (729)
Q Consensus 427 Td~~~rGlDi~~v~~VI~~d~------------------P~s~~~yiQriGRagR~G~~G~~i~l~~~~ 477 (729)
|+++...+.|++|.+||.-++ |-|-.+-.||.||+||. ++|.|+.++++.
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999996442 44667788999999995 699999999864
No 125
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=1.9e-19 Score=199.27 Aligned_cols=322 Identities=18% Similarity=0.181 Sum_probs=210.9
Q ss_pred CcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 148 pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
+-+||.-.++|+.- +-+.|+...+|.|||.+. +..|..|..... ++| -|||||...|-+ |.+.+.+|| +
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~--~gp-HLVVvPsSTleN-WlrEf~kwC--P 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN--PGP-HLVVVPSSTLEN-WLREFAKWC--P 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC--CCC-cEEEecchhHHH-HHHHHHHhC--C
Confidence 78999999999763 457899999999999873 555555544332 333 689999988843 344445444 5
Q ss_pred CceEEEEecCCChHHHHHHHh----cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc
Q 004808 224 DIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~~l~----~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~ 299 (729)
.++|..++|........+... ...+|+++||.-...--.....+.-.+|.++|+||+|.|-+.. ...+..++..-
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~ 551 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN 551 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc
Confidence 788888898875444433221 2579999998765422111112334678899999999987764 33344443332
Q ss_pred CcCceEEEEecccc-hhHHHHHHHhc---C-----------------------------------------CCe------
Q 004808 300 PKRRQTMLFSATLT-EDVDELIKLSL---T-----------------------------------------KPL------ 328 (729)
Q Consensus 300 ~~~~q~il~SATl~-~~v~~l~~~~l---~-----------------------------------------~p~------ 328 (729)
..+.|++|+|+- +++.+++.+.. . .|.
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 234466666653 22222211100 0 000
Q ss_pred ------------EEec-------------------------CCCCCCCC--Cce-------------eEE----------
Q 004808 329 ------------RLSA-------------------------DPSAKRPS--TLT-------------EEV---------- 346 (729)
Q Consensus 329 ------------~i~~-------------------------~~~~~~~~--~l~-------------~~~---------- 346 (729)
.+.. ........ .+. ++|
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 0000 00000000 000 000
Q ss_pred ------------------------------------------EEeehhhhhhHHHHHHHHhh--ccCCCeEEEEeCcHHH
Q 004808 347 ------------------------------------------VRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQA 382 (729)
Q Consensus 347 ------------------------------------------~~~~~~~~~~k~~~l~~l~~--~~~~~~vLIF~~s~~~ 382 (729)
..-.....+.+...|..++. ...+++||||.....+
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 00000011122233333332 2236899999999999
Q ss_pred HHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC--ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcc
Q 004808 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (729)
Q Consensus 383 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGR 460 (729)
.+.|..+|...++.+..|.|.+....|+.+++.|...+ .-+|++|-+++-|||+..+++||.||+..||-.-.|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999775 3479999999999999999999999999999999999999
Q ss_pred cccCCC--ccEEEEEeccCcH
Q 004808 461 TARAGR--EGYAVTFVTDNDR 479 (729)
Q Consensus 461 agR~G~--~G~~i~l~~~~d~ 479 (729)
++|.|+ +-.++.|++.+..
T Consensus 870 cHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHhhCCcceeEEEEEEecCcH
Confidence 999996 4678888888763
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.83 E-value=1.2e-18 Score=198.26 Aligned_cols=323 Identities=18% Similarity=0.179 Sum_probs=206.2
Q ss_pred CCcHHHHHHHHHHhc---C-------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCC--CCCcEEEEEcCcHHHHHHHHH
Q 004808 147 KPTPIQAACIPLALT---G-------RDICGSAITGSGKTAAFALPTLERLLYRPKR--IPAIRVLILTPTRELAVQVHS 214 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~---g-------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~--~~~~~vLIl~PtreLa~Q~~~ 214 (729)
.++|+|.+++..+-. | ..+|++..+|+|||++. ++++..++..... ..--+.|||+|. .|+.-|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 578999999987643 2 35778888999999985 5555555543221 112468999996 67788899
Q ss_pred HHHHHhhccCceEEEEecCCCh--HHHHHHH-----hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC
Q 004808 215 MIEKIAQFTDIRCCLVVGGLST--KMQETAL-----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (729)
Q Consensus 215 ~~~~l~~~~~i~v~~~~gg~~~--~~~~~~l-----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g 287 (729)
.|.+|.....+....++|.... ......+ ....-|++.+++.+.+++.. +.+..+++||+||+|++-|.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch-
Confidence 9988876556777777777664 1111111 12245888999999877764 55778899999999997664
Q ss_pred hHHHHHHHHHhcCcCceEEEEecccc-hhHHHHHHHh-cCCCeEE-----------------------------------
Q 004808 288 FSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRL----------------------------------- 330 (729)
Q Consensus 288 f~~~i~~il~~~~~~~q~il~SATl~-~~v~~l~~~~-l~~p~~i----------------------------------- 330 (729)
...+...+..+... ..|++|+|+- +++.+..... +.+|-.+
T Consensus 392 -~s~~~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 22333334444333 3466666653 2222221110 0000000
Q ss_pred ----------e--cCCCCCCCCCceeEEEEeeh-----------------------------------------------
Q 004808 331 ----------S--ADPSAKRPSTLTEEVVRIRR----------------------------------------------- 351 (729)
Q Consensus 331 ----------~--~~~~~~~~~~l~~~~~~~~~----------------------------------------------- 351 (729)
. ........+.+..+++.+.+
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 0 00000000111111111110
Q ss_pred ------------------------hhhhhHHHHHHHHh---hccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCC
Q 004808 352 ------------------------MREVNQEAVLLSLC---SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (729)
Q Consensus 352 ------------------------~~~~~k~~~l~~l~---~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 404 (729)
.....+...|..++ .......+++..|-....+.+..+++..|+.++.|||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 01112223333333 222234455556666777777788888899999999999
Q ss_pred CHHHHHHHHHHHhcCC---ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEE--eccC
Q 004808 405 TQAQRLEALELFRKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF--VTDN 477 (729)
Q Consensus 405 ~~~~R~~~l~~F~~g~---~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l--~~~~ 477 (729)
+..+|..+++.|++.. .-+|++|-+++.||++-|++.||.||++|||+.-.|+++|+.|.|+.-.|++| ++..
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 9999999999999754 33777899999999999999999999999999999999999999987666555 5543
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.1e-17 Score=192.82 Aligned_cols=317 Identities=19% Similarity=0.229 Sum_probs=213.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+++|--.--.++.| -|+.+.||+|||+++.+|++-..+. +..|-|++|+--||.|-++++..+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~------G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS------GKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 453 5888887776666555 5899999999999999999866543 335899999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccCc-----cCCCCeeEEEEeCcchhh-cC--------C
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-EL--------G 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~~-----~~l~~i~~lVvDEah~ll-~~--------g 287 (729)
.|+.|+++.++.+.......+. +||+++|..-| .|+|+.... .....+.++||||+|.+| +. |
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 9999999988877665554443 89999999886 455554311 124788999999999854 10 0
Q ss_pred -------hHHHHHHHHHhc-------------------------------------------------------------
Q 004808 288 -------FSAEIHELVRLC------------------------------------------------------------- 299 (729)
Q Consensus 288 -------f~~~i~~il~~~------------------------------------------------------------- 299 (729)
+...+..++..+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 000000000000
Q ss_pred -------C------c-------------------------------------------------------------CceE
Q 004808 300 -------P------K-------------------------------------------------------------RRQT 305 (729)
Q Consensus 300 -------~------~-------------------------------------------------------------~~q~ 305 (729)
. + ...+
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 0 0 0134
Q ss_pred EEEecccchhHHHHHHHhcCCCeEEecCCCCCCCC---CceeEEEEeehhhhhhHHHHHHHHhh--ccCCCeEEEEeCcH
Q 004808 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS---TLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTK 380 (729)
Q Consensus 306 il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~---~l~~~~~~~~~~~~~~k~~~l~~l~~--~~~~~~vLIF~~s~ 380 (729)
.+||+|...+..++...+-...+.+ +.. .|. .....+. . ....+...+..-+. ...+.+|||-|.|.
T Consensus 388 sGMTGTa~te~~Ef~~iY~l~Vv~I---PTn-kP~~R~D~~d~vy--~--t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SV 459 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGLDVVVI---PPN-KPLARKDFNDLVY--L--TAEEKYAAIITDIKECMALGRPVLVGTATI 459 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEEEC---CCC-CCcccccCCCeEE--c--CHHHHHHHHHHHHHHHHhCCCCEEEEeCCH
Confidence 4555555544444433332221111 111 111 1111111 1 11233333333222 23578999999999
Q ss_pred HHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCCC----------------------
Q 004808 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII---------------------- 437 (729)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLVaTd~~~rGlDi~---------------------- 437 (729)
...+.|..+|...|++.-+|+......+- .++. ..| .-.|.|||++|+||.||.
T Consensus 460 e~SE~ls~~L~~~gi~h~VLNAk~~~~EA-~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 460 ETSEHMSNLLKKEGIEHKVLNAKYHEKEA-EIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHHHHcCCcHHHhccccchhHH-HHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 99999999999999998888886443322 2222 345 456999999999999994
Q ss_pred ---------------CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 438 ---------------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 438 ---------------~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
|==|||-...|.|...-.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 33579999999999999999999999999999999999876433
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=1.4e-18 Score=171.83 Aligned_cols=186 Identities=40% Similarity=0.592 Sum_probs=152.1
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 143 LGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.++..|+++|.++++.++.+ +.++++++||+|||.+++.+++..+.... ..++||++|++.++.|+...+..+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46778999999999999999 99999999999999998888888775432 23699999999999999999988765
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCC-CeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~-dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~ 300 (729)
..........++.........+.... +|+++||+.|.+.+... ......+.++||||||.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 54434444555555444555555555 99999999999988775 35677889999999999987678888888988888
Q ss_pred cCceEEEEecccchhHHHHHHHhcCCCeEEecC
Q 004808 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (729)
Q Consensus 301 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~ 333 (729)
...+++++|||++.........++...+.+...
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 889999999999999988888888876666554
No 129
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=3.5e-18 Score=199.63 Aligned_cols=300 Identities=18% Similarity=0.142 Sum_probs=176.3
Q ss_pred CcHHHHHHHHHHhc----------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 148 PTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 148 pt~iQ~~~i~~ll~----------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
|+++|..++..++. .+..|++.+||||||++.+ .+...++.. ...++||||+|+.+|..|+.+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~-~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTML-FAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHH-HHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHH
Confidence 67889888876532 2579999999999998753 333344322 245689999999999999999998
Q ss_pred HHhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhcc-CccCCCCe-eEEEEeCcchhhcCChHHHHHH
Q 004808 218 KIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNS-MSVDLDDL-AVLILDEADRLLELGFSAEIHE 294 (729)
Q Consensus 218 ~l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~-~~~~l~~i-~~lVvDEah~ll~~gf~~~i~~ 294 (729)
.+.... ..+..+.......+. ....|+|+|...|...+... ..+..... -+||+||||+..... +..
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~----~~~ 384 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE----LAK 384 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----HHH
Confidence 864210 111112222222232 24689999999997644321 11111111 289999999865332 223
Q ss_pred HH-HhcCcCceEEEEecccchhHHHHH-HHh---cCCCeEEecCCCCCCCCCceeE--EE-E-----eehh---------
Q 004808 295 LV-RLCPKRRQTMLFSATLTEDVDELI-KLS---LTKPLRLSADPSAKRPSTLTEE--VV-R-----IRRM--------- 352 (729)
Q Consensus 295 il-~~~~~~~q~il~SATl~~~v~~l~-~~~---l~~p~~i~~~~~~~~~~~l~~~--~~-~-----~~~~--------- 352 (729)
.+ ..+| ....++|||||-....... ..+ +..++ ............+.-. +. . +...
T Consensus 385 ~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i-~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 385 NLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYL-HRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeE-EEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 33 3444 4678999999953211100 011 11111 1100000000000000 00 0 0000
Q ss_pred --------hhhh-------------------HH-----HHHHHHhh--ccCCCeEEEEeCcHHHHHHHHHHHhhc-----
Q 004808 353 --------REVN-------------------QE-----AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA----- 393 (729)
Q Consensus 353 --------~~~~-------------------k~-----~~l~~l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~----- 393 (729)
.... .. .++..+.. ...+.+++|||.++..|..+...|...
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 0000 00 00011111 112489999999999999999887554
Q ss_pred CCceeeccCCCCHH---------------------HHHHHHHHHhc-CCceEEEEcCccccccCCCCccEEEEeCCCCCh
Q 004808 394 ALKAAELHGNLTQA---------------------QRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451 (729)
Q Consensus 394 ~~~~~~lhg~~~~~---------------------~R~~~l~~F~~-g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~ 451 (729)
+.....+++..... ....+++.|++ +..+|||+++++..|+|.|.+.+++..-+-.+
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~- 621 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY- 621 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-
Confidence 24455666543322 12468889976 68899999999999999999999987766555
Q ss_pred hhHHHHhcccccC
Q 004808 452 TSYVHRVGRTARA 464 (729)
Q Consensus 452 ~~yiQriGRagR~ 464 (729)
..++|.+||+.|.
T Consensus 622 h~LlQai~R~nR~ 634 (667)
T TIGR00348 622 HGLLQAIARTNRI 634 (667)
T ss_pred cHHHHHHHHhccc
Confidence 4689999999993
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.4e-17 Score=184.14 Aligned_cols=319 Identities=18% Similarity=0.205 Sum_probs=212.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+++|--+.-.++.|+ |+.+.||-|||++..+|++-+.+. +..|-||+..--||..=++++..+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~------GkgVhVVTvNdYLA~RDae~mg~vy~f 145 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT------GKGVIVSTVNEYLAERDAEEMGKVFNF 145 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc------CCceEEEecchhhhhhhHHHHHHHHHH
Confidence 355 68999988877777664 899999999999999998654433 234788888899999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhh-cCC--------
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG-------- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~g-------- 287 (729)
.|+.|+++..+......... ..+||+++|..-| .++|+... ......+.+.||||+|.+| +..
T Consensus 146 LGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred hCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 99999999888776654433 3589999998765 44555432 1235678899999999854 100
Q ss_pred -------hHHHHHHHHHhcCc-----------------------------------------------------------
Q 004808 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (729)
Q Consensus 288 -------f~~~i~~il~~~~~----------------------------------------------------------- 301 (729)
+...+..++..+..
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 11111111111100
Q ss_pred ---------------------------------------------------------CceEEEEecccchhHHHHHHHhc
Q 004808 302 ---------------------------------------------------------RRQTMLFSATLTEDVDELIKLSL 324 (729)
Q Consensus 302 ---------------------------------------------------------~~q~il~SATl~~~v~~l~~~~l 324 (729)
..++.+||+|...+-.++...+-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 11345556665554444443332
Q ss_pred CCCeEEecCCCCCCCCCcee-EEEEeehhhhhhHHHHHHH-Hhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeecc
Q 004808 325 TKPLRLSADPSAKRPSTLTE-EVVRIRRMREVNQEAVLLS-LCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (729)
Q Consensus 325 ~~p~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~k~~~l~~-l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (729)
...+. .+.. .|..-.. .-..+. ....+...+.. +.. ...+.+|||.|.|....+.|..+|...|++..+|+
T Consensus 384 l~Vv~---IPTn-kP~~R~D~~d~iy~--t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 384 MRVNV---VPTN-KPVIRKDEPDSIFG--TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred CCEEE---CCCC-CCeeeeeCCCcEEE--cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 22111 1111 1110000 000111 11223333332 222 23578999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCCCCcc--------EEEEeCCCCChhhHHHHhcccccCCCccEEEE
Q 004808 402 GNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDIIGVQ--------TVINYACPRDLTSYVHRVGRTARAGREGYAVT 472 (729)
Q Consensus 402 g~~~~~~R~~~l~~F~~g-~~~vLVaTd~~~rGlDi~~v~--------~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~ 472 (729)
..-. ++...+-. ..| ...|.|||++|+||.||.--. |||....|.|...--|..||+||.|.+|.+..
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 8633 33333322 456 456999999999999996332 89999999999999999999999999999999
Q ss_pred EeccCcHHH
Q 004808 473 FVTDNDRSL 481 (729)
Q Consensus 473 l~~~~d~~~ 481 (729)
|++-.|.-+
T Consensus 535 ~lSLeD~L~ 543 (925)
T PRK12903 535 FISLDDQLF 543 (925)
T ss_pred EEecchHHH
Confidence 999776433
No 131
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.80 E-value=2.4e-17 Score=187.12 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=100.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC--ceEEEEcCccccccCCCCccEEEEe
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINY 445 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLVaTd~~~rGlDi~~v~~VI~~ 445 (729)
..++++|||+....+.+.|..+|+..|+-+..|+|....++|...+++|+... +.+|++|...+.|||+.++++||+|
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 34789999999999999999999999999999999999999999999999875 5678999999999999999999999
Q ss_pred CCCCChhhHHHHhcccccCCCc--cEEEEEeccCc
Q 004808 446 ACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND 478 (729)
Q Consensus 446 d~P~s~~~yiQriGRagR~G~~--G~~i~l~~~~d 478 (729)
|..||+.--.|.-.|++|.|+. -+.|.|+++..
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999888888888888864 56677777653
No 132
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.2e-18 Score=197.25 Aligned_cols=327 Identities=16% Similarity=0.184 Sum_probs=211.2
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 146 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~----g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
..+.+||...+.|+.. +-+.|+...||.|||.+. +.++..++...+ ..+| .||+||+..|..+ ...+..|+
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~-~~GP-~LvivPlstL~NW-~~Ef~kWa- 467 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ-MQGP-FLIIVPLSTLVNW-SSEFPKWA- 467 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc-cCCC-eEEeccccccCCc-hhhccccc-
Confidence 3789999999999875 347889999999999873 666666665443 2333 7999999999664 44444432
Q ss_pred ccCceEEEEecCCChH--HHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc
Q 004808 222 FTDIRCCLVVGGLSTK--MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~--~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~ 299 (729)
+.+..+.+.|..... .+........+|+++|++.++. ....+.--+|.++||||.|+|.+. ...+...++..
T Consensus 468 -PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 468 -PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTH 541 (1157)
T ss_pred -cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccch--hhHHHHHhhcc
Confidence 456555555543211 1122234668999999988754 211233346779999999998652 22222222211
Q ss_pred CcCceEEEEecccc----hhHHHH--------------------------------------------------------
Q 004808 300 PKRRQTMLFSATLT----EDVDEL-------------------------------------------------------- 319 (729)
Q Consensus 300 ~~~~q~il~SATl~----~~v~~l-------------------------------------------------------- 319 (729)
......+++|+|+. +++..+
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 11111233333321 000000
Q ss_pred ---------------------------------------------------------HHHhcCCCeEEecCCCCCCCCCc
Q 004808 320 ---------------------------------------------------------IKLSLTKPLRLSADPSAKRPSTL 342 (729)
Q Consensus 320 ---------------------------------------------------------~~~~l~~p~~i~~~~~~~~~~~l 342 (729)
++..|+.|..+..... .+
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~-----~~ 696 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN-----SY 696 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc-----cc
Confidence 0111111111100000 00
Q ss_pred eeEEEEeehhhhhhHHHHHHHHhh--ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 004808 343 TEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (729)
Q Consensus 343 ~~~~~~~~~~~~~~k~~~l~~l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 420 (729)
...+-.....+...+..+|-.++. ...+++||+||........+..||...++.+..+.|.+...+|...+..|+.-.
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 000000011223344444544443 234799999999999999999999999999999999999999999999999754
Q ss_pred ---ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 421 ---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 421 ---~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
+.+|++|.+.+.|+|+..+++||.||..|+|..+.|+..|++|.|+.-.|.++....-.++.+.|...
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999988777777666555555555443
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=8.5e-17 Score=191.16 Aligned_cols=324 Identities=19% Similarity=0.243 Sum_probs=196.9
Q ss_pred cCCCCCcHHHHHHHHH----HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH-HHHHH
Q 004808 143 LGYSKPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIE 217 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~----ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~-~~~~~ 217 (729)
.|| .+++-|.+.+.. +..+..+++.|+||+|||++|++|++... .+.+|||++||++|+.|+ ...+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 355 489999884433 34478899999999999999999988753 234799999999999999 47788
Q ss_pred HHhhccCceEEEEecCCChHHH-----------------------------------------------HHHH-------
Q 004808 218 KIAQFTDIRCCLVVGGLSTKMQ-----------------------------------------------ETAL------- 243 (729)
Q Consensus 218 ~l~~~~~i~v~~~~gg~~~~~~-----------------------------------------------~~~l------- 243 (729)
.+....++++.++.|+.+.-.. |..+
T Consensus 314 ~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~ 393 (820)
T PRK07246 314 AIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLS 393 (820)
T ss_pred HHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCC
Confidence 8887788888877776431100 0000
Q ss_pred -----------------hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-----h-------HHH---
Q 004808 244 -----------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----F-------SAE--- 291 (729)
Q Consensus 244 -----------------~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-----f-------~~~--- 291 (729)
...+||||+...-|+.++.... .+...++|||||||++.+.. . ...
T Consensus 394 ~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~ 471 (820)
T PRK07246 394 QSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQK 471 (820)
T ss_pred CCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHH
Confidence 1126899999988887765432 35778999999999975210 0 000
Q ss_pred ----------------------------------------HHH-------H--------HHh------------------
Q 004808 292 ----------------------------------------IHE-------L--------VRL------------------ 298 (729)
Q Consensus 292 ----------------------------------------i~~-------i--------l~~------------------ 298 (729)
+.. + ...
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~ 551 (820)
T PRK07246 472 ALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEK 551 (820)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 000 0 000
Q ss_pred ------------------cCcCceEEEEecccc--hhHHHHHH-HhcCCCeEEecCCCCCCCCCceeEEEEe----ehhh
Q 004808 299 ------------------CPKRRQTMLFSATLT--EDVDELIK-LSLTKPLRLSADPSAKRPSTLTEEVVRI----RRMR 353 (729)
Q Consensus 299 ------------------~~~~~q~il~SATl~--~~v~~l~~-~~l~~p~~i~~~~~~~~~~~l~~~~~~~----~~~~ 353 (729)
++....+|++|||++ +... +.. +.+......... .. .. .+..+.+ +...
T Consensus 552 ~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~-~~--~~--~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 552 RVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE-KD--KK--QDQLVVVDQDMPLVT 625 (820)
T ss_pred ceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC-CC--hH--HccEEEeCCCCCCCC
Confidence 001236789999986 3332 222 222221111111 00 00 1111111 1100
Q ss_pred ----hh---hHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEE
Q 004808 354 ----EV---NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (729)
Q Consensus 354 ----~~---~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 426 (729)
.. .-...+..++ ..++++||+++|+.....++..|....+.+ ...|... .+..+++.|+.+...||++
T Consensus 626 ~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred CCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 00 1112223333 346899999999999999999887654444 3334222 2466899999998899999
Q ss_pred cCccccccCCCC--ccEEEEeCCCCC-h-----------------------------hhHHHHhcccccCCC-ccEEEEE
Q 004808 427 TDVAARGLDIIG--VQTVINYACPRD-L-----------------------------TSYVHRVGRTARAGR-EGYAVTF 473 (729)
Q Consensus 427 Td~~~rGlDi~~--v~~VI~~d~P~s-~-----------------------------~~yiQriGRagR~G~-~G~~i~l 473 (729)
|..+.+|+|+|+ ...||...+|.. | ..+.|.+||.=|... .|. +++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~i 779 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLI 779 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEE
Confidence 999999999974 566777776631 1 234589999999654 354 444
Q ss_pred eccC--cHHHHHHHHHH
Q 004808 474 VTDN--DRSLLKAIAKR 488 (729)
Q Consensus 474 ~~~~--d~~~l~~i~~~ 488 (729)
+++. ...+-+.+.+.
T Consensus 780 lD~R~~~k~Yg~~~l~s 796 (820)
T PRK07246 780 LDRRILTKSYGKQILAS 796 (820)
T ss_pred ECCcccccHHHHHHHHh
Confidence 4443 33344444433
No 134
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=2.3e-17 Score=185.39 Aligned_cols=297 Identities=21% Similarity=0.238 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 146 SKPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~----g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
..|+++|..+|..+.. | +-+|+.+.||+|||.++ +.++.+|+.... -.+||+|+-++.|..|.+..+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~---~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW---VKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch---hheeeEEechHHHHHHHHHHHHHhC
Confidence 3588999999866543 4 35889999999999874 666666665432 3379999999999999999888765
Q ss_pred hccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc----CccCCCCeeEEEEeCcchhhcCChHHHHHHHH
Q 004808 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (729)
Q Consensus 221 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~----~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il 296 (729)
.+ +-.+..+.+... ...++|.|+|+.+|...+... ..+....+++|||||||+=. ...+..|+
T Consensus 240 P~-~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~ 306 (875)
T COG4096 240 PF-GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSIL 306 (875)
T ss_pred CC-ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHH
Confidence 43 222222222211 124789999999998887653 23556779999999999844 33333555
Q ss_pred HhcCcCceEEEEecccchhHHHHHHHhc-CCCeEE--------------------e--cCCCCCCCCCcee------EEE
Q 004808 297 RLCPKRRQTMLFSATLTEDVDELIKLSL-TKPLRL--------------------S--ADPSAKRPSTLTE------EVV 347 (729)
Q Consensus 297 ~~~~~~~q~il~SATl~~~v~~l~~~~l-~~p~~i--------------------~--~~~~~~~~~~l~~------~~~ 347 (729)
..+.... +++|||+...+....-.++ ..|+.. . +......+..+.. ..+
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 5544333 3348888765443333333 222211 1 1111111111100 000
Q ss_pred -------Eee--------hhhhhhHHHHHHHHhhc--cC--CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCC
Q 004808 348 -------RIR--------RMREVNQEAVLLSLCSK--TF--TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGN 403 (729)
Q Consensus 348 -------~~~--------~~~~~~k~~~l~~l~~~--~~--~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~ 403 (729)
... ..........+...+.. .. .+++||||.+..+++++...|... +--+..|.|.
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 000 00111112223333443 11 468999999999999999998754 2335566665
Q ss_pred CCHHHHHHHHHHHhcC--CceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhccccc
Q 004808 404 LTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463 (729)
Q Consensus 404 ~~~~~R~~~l~~F~~g--~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR 463 (729)
-.+. ...+..|... --.|.|+.+++..|+|+|.|..+|++-.-.|..-|-|++||+-|
T Consensus 465 ~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 465 AEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred chhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 4433 3456666653 34599999999999999999999999999999999999999988
No 135
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=1e-17 Score=176.79 Aligned_cols=314 Identities=18% Similarity=0.230 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 146 SKPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g---~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
..++|+|..++.-++.+ +..|+..|+|+|||++-+-++ ..+ ..++||||..-..+.||..++..|+..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti--------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI--------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee--------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 36789999999999874 689999999999998753333 222 235999999999999999999988776
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccC-------ccCCCCeeEEEEeCcchhhcCChHHHHHHH
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-------SVDLDDLAVLILDEADRLLELGFSAEIHEL 295 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~-------~~~l~~i~~lVvDEah~ll~~gf~~~i~~i 295 (729)
.+-.++.++...... ...++.|+|+|+.++..--.++. .+.-..|.++|+||+|.+...-|+..+..+
T Consensus 372 ~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 666667666654322 34668899999977643211110 122467999999999998877777777666
Q ss_pred HHhcCcCceEEEEecccchhHHHHHHH-hcCCCeEEecCC-------------C----CCCCCCceeEE----------E
Q 004808 296 VRLCPKRRQTMLFSATLTEDVDELIKL-SLTKPLRLSADP-------------S----AKRPSTLTEEV----------V 347 (729)
Q Consensus 296 l~~~~~~~q~il~SATl~~~v~~l~~~-~l~~p~~i~~~~-------------~----~~~~~~l~~~~----------~ 347 (729)
-.+|. +++|||+-.+-..+..+ ++..|-.+..+- . ......+...+ .
T Consensus 447 ~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 66663 89999985432222111 111111110000 0 00000000000 0
Q ss_pred EeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEEE
Q 004808 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIA 426 (729)
Q Consensus 348 ~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLVa 426 (729)
.+-....-.....|..++.. .+.++|||....-....++..|+. -.|+|.++|.+|+++++.|+-. .++.++.
T Consensus 522 yvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 00000111122334444443 688999999988777777666543 3678999999999999999954 6888889
Q ss_pred cCccccccCCCCccEEEEeCCCC-ChhhHHHHhcccccCCC------ccEEEEEeccCcHHHHHH
Q 004808 427 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGR------EGYAVTFVTDNDRSLLKA 484 (729)
Q Consensus 427 Td~~~rGlDi~~v~~VI~~d~P~-s~~~yiQriGRagR~G~------~G~~i~l~~~~d~~~l~~ 484 (729)
.-++...||+|.++++|+..... |-.+-.||.||.-|+-+ ....|.+++.+...+...
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 99999999999999999887654 56677899999988643 246677788877666544
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.76 E-value=1.1e-15 Score=175.66 Aligned_cols=131 Identities=24% Similarity=0.263 Sum_probs=98.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+. |+++|--+.-.+. +.-|+.+.||.|||+++.+|++-..+. +..|-||+++..||.+-++++..+..+
T Consensus 73 lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~------G~~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT------GKGVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred hCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc------CCceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4554 7888876654444 457999999999999999999644432 334899999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-----HHHHhcc-CccCCCCeeEEEEeCcchhh
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-----IDHLRNS-MSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-----~~~l~~~-~~~~l~~i~~lVvDEah~ll 284 (729)
.|+.|+++.++.+....... ..+||+++|..-| .+.|... .......+.++||||+|.++
T Consensus 144 LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999999888776544433 3479999998644 4443211 12235678899999999843
No 137
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.74 E-value=8.9e-16 Score=162.38 Aligned_cols=326 Identities=15% Similarity=0.204 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCc
Q 004808 147 KPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i 225 (729)
.+.|+|.+.+..++. |..+++...+|.|||++++ .+ ... ++... ..|||||.. |-.-|.+.+..|..-. .
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aI-A~y-yraEw----plliVcPAs-vrftWa~al~r~lps~-~ 268 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AI-ARY-YRAEW----PLLIVCPAS-VRFTWAKALNRFLPSI-H 268 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HH-HHH-HhhcC----cEEEEecHH-HhHHHHHHHHHhcccc-c
Confidence 468999999988876 6789999999999998753 22 222 22222 289999975 4456777777765432 1
Q ss_pred eEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceE
Q 004808 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (729)
Q Consensus 226 ~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~ 305 (729)
.+.++.++.+.- ..+-....|.|.+++.|..+ .+ .+.-..+.+||+||+|+|-+.. ......++..+..-..+
T Consensus 269 pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l-~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 269 PIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLL-HD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHV 341 (689)
T ss_pred ceEEEecccCCc---cccccCCeEEEEEHHHHHHH-HH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhhe
Confidence 234444443321 11223357999999887543 22 2334568999999999887543 33355555556566678
Q ss_pred EEEecccc-------------------hhHHHHHHHhcCCC-eEEecCC--------------------------CCCCC
Q 004808 306 MLFSATLT-------------------EDVDELIKLSLTKP-LRLSADP--------------------------SAKRP 339 (729)
Q Consensus 306 il~SATl~-------------------~~v~~l~~~~l~~p-~~i~~~~--------------------------~~~~~ 339 (729)
|++|.|+. +..-++...+|.-. +.+..+. ....|
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLP 421 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLP 421 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999973 22233333333221 1111110 01122
Q ss_pred CCceeEEEEeehhhhh---------------------hH--------------HHHH-HHHh-----hccCCCeEEEEeC
Q 004808 340 STLTEEVVRIRRMREV---------------------NQ--------------EAVL-LSLC-----SKTFTSKVIIFSG 378 (729)
Q Consensus 340 ~~l~~~~~~~~~~~~~---------------------~k--------------~~~l-~~l~-----~~~~~~~vLIF~~ 378 (729)
+. .+.++.+...... .. ...+ ..++ -...+.+.|||+.
T Consensus 422 pK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 422 PK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred cc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 22 2222222110000 00 0001 1111 2234678999999
Q ss_pred cHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceE-EEEcCccccccCCCCccEEEEeCCCCChhhHHH
Q 004808 379 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456 (729)
Q Consensus 379 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~v-LVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQ 456 (729)
.....+-+...+...++....|.|.++...|....+.|+.. ++.| +++..+++.||++...+.||+..++|||.-.+|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 99999999999999999999999999999999999999965 4555 667888999999999999999999999999999
Q ss_pred HhcccccCCCccEEE--EEeccC--cHHHHHHHHHHh
Q 004808 457 RVGRTARAGREGYAV--TFVTDN--DRSLLKAIAKRA 489 (729)
Q Consensus 457 riGRagR~G~~G~~i--~l~~~~--d~~~l~~i~~~~ 489 (729)
.-.|++|.|+...+. .|+... |..+|..+.+.+
T Consensus 581 AEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred chhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 999999999864433 334443 455566555543
No 138
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.73 E-value=1.2e-16 Score=174.45 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=100.1
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCCCCccEEEEeC
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINYA 446 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~-~vLVaTd~~~rGlDi~~v~~VI~~d 446 (729)
..++++|+|++...++..+.+||...++....|.|.....+|..++..|....+ -+|++|.+.+.||++..+++||+||
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYd 1121 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYD 1121 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEec
Confidence 347899999999999999999999999999999999999999999999998654 4788999999999999999999999
Q ss_pred CCCChhhHHHHhcccccCCCc--cEEEEEeccCc
Q 004808 447 CPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND 478 (729)
Q Consensus 447 ~P~s~~~yiQriGRagR~G~~--G~~i~l~~~~d 478 (729)
..|||..-.|.+.|++|.|+. -.+|.++....
T Consensus 1122 SDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1122 SDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 999999999999999999975 45666666543
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=6.9e-16 Score=174.06 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=113.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc-Cc
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DI 225 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~-~i 225 (729)
.|..+|.+.+..+=.+..+++.|||.+|||.+ ..-+++.++.... ...||+++||..|+.|+...+......+ -.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD---~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD---SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC---CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 47889999999999999999999999999986 3455666665433 2359999999999999987776543222 22
Q ss_pred eEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc--CccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCc
Q 004808 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (729)
Q Consensus 226 ~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~--~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~ 303 (729)
+...+.|....+-+.. .-+|+|+|+-|+-|-..|... .......++++|+||+|.+-+..-.-.+.+++...| +
T Consensus 587 rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--C 662 (1330)
T ss_pred cchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--C
Confidence 2233344333222211 125899999999998777652 233468899999999999987654455555665554 4
Q ss_pred eEEEEecccchh
Q 004808 304 QTMLFSATLTED 315 (729)
Q Consensus 304 q~il~SATl~~~ 315 (729)
.++++|||+.+.
T Consensus 663 P~L~LSATigN~ 674 (1330)
T KOG0949|consen 663 PFLVLSATIGNP 674 (1330)
T ss_pred CeeEEecccCCH
Confidence 589999998643
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=5.2e-15 Score=169.84 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=102.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+++|--+--.++.| -|+.+.||-|||+++.+|++-..+.. ..|-||+++.-||.+=++++..+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~G------kgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTG------KGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcC------CCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 354 5788887776666555 58999999999999999998665433 34899999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-----HHHHhcc-CccCCCCeeEEEEeCcchhh
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-----IDHLRNS-MSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-----~~~l~~~-~~~~l~~i~~lVvDEah~ll 284 (729)
.|+.|+++.++....... ....+||+++|+..| .+.|... .......+.++||||+|.+|
T Consensus 153 LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999998877665433 345789999999887 5555431 22346788899999999854
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.70 E-value=1.5e-16 Score=147.34 Aligned_cols=117 Identities=39% Similarity=0.603 Sum_probs=106.4
Q ss_pred HHHHHHHHhhcc--CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 004808 357 QEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (729)
Q Consensus 357 k~~~l~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGl 434 (729)
+...+..++... .++++||||++...++.+..+|...+..+..+||.++..+|..++..|.+|...||++|.++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 444455555443 378999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEE
Q 004808 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (729)
Q Consensus 435 Di~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l 473 (729)
|+|++++||++++|++...|+|++||++|.|+.|.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999998988764
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=6.6e-17 Score=136.10 Aligned_cols=78 Identities=33% Similarity=0.599 Sum_probs=75.5
Q ss_pred HHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCC
Q 004808 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (729)
Q Consensus 388 ~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G 465 (729)
++|...++.+..+||++++.+|..+++.|+.|...|||||+++++|||+|.+++||+|++|+|+..|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999976
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=1.6e-14 Score=174.87 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=83.4
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC--ccEEEE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--VQTVIN 444 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~--v~~VI~ 444 (729)
.++++|||++|+.....+...|..... .+..+.-+++...|..+++.|+.+...||++|..+.+|||+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999875422 1222333444446788999999998899999999999999998 588998
Q ss_pred eCCCC-Ch-----------------------------hhHHHHhcccccCCCccEEEEEeccC--cHHHHHHHHH
Q 004808 445 YACPR-DL-----------------------------TSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAK 487 (729)
Q Consensus 445 ~d~P~-s~-----------------------------~~yiQriGRagR~G~~G~~i~l~~~~--d~~~l~~i~~ 487 (729)
..+|. +| ..+.|.+||.-|....--++++++.. ...+=+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~ 905 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLE 905 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHH
Confidence 88775 22 12358899999966442234444443 3334344443
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.66 E-value=7.9e-14 Score=159.16 Aligned_cols=74 Identities=27% Similarity=0.284 Sum_probs=58.0
Q ss_pred HHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh-hc--cCceEEEEec
Q 004808 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QF--TDIRCCLVVG 232 (729)
Q Consensus 156 i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~-~~--~~i~v~~~~g 232 (729)
...+..++.+++.|+||+|||++|++|++..+... .+.+|||++||++|+.|+.+.+..+. .. ..+++.++.|
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~----~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER----PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc----cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 34455678899999999999999999999876532 23579999999999999999888887 33 3455555555
Q ss_pred C
Q 004808 233 G 233 (729)
Q Consensus 233 g 233 (729)
+
T Consensus 86 r 86 (636)
T TIGR03117 86 S 86 (636)
T ss_pred C
Confidence 4
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=2.1e-15 Score=161.84 Aligned_cols=276 Identities=23% Similarity=0.268 Sum_probs=180.3
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~ 244 (729)
++-+|||.||||.- +|+++..-.. .++.-|.|.||..+++.+... |+.|.+++|......... .
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~aks------GvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAKS------GVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhcc------ceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--C
Confidence 55799999999954 5677654433 588999999999999998874 778888887533211110 1
Q ss_pred cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHH-HHHHHhcCcCceEEEEecccchhHHHHHHHh
Q 004808 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 245 ~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i-~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 323 (729)
..+..+-||-+++- . -..+++.||||.+.|-+....-.+ ..++-.......+.+ .+.+..+++..
T Consensus 258 ~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i 323 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKI 323 (700)
T ss_pred CcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHH
Confidence 12566777755431 1 245789999999999875433222 223333333322221 13444555444
Q ss_pred cCCCeEEecCCCCCCCCC-ceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCc-eeecc
Q 004808 324 LTKPLRLSADPSAKRPST-LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELH 401 (729)
Q Consensus 324 l~~p~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~lh 401 (729)
+... ... ....+-++.+..... .+..-+....++-+|| |-|+..+..+...+...+.. +++|+
T Consensus 324 ~k~T-----------Gd~vev~~YeRl~pL~v~~---~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 324 LKMT-----------GDDVEVREYERLSPLVVEE---TALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred Hhhc-----------CCeeEEEeecccCcceehh---hhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEe
Confidence 4321 111 112223333322211 2223333444444433 33778888888888888765 99999
Q ss_pred CCCCHHHHHHHHHHHhc--CCceEEEEcCccccccCCCCccEEEEeCCCC---------ChhhHHHHhcccccCCC---c
Q 004808 402 GNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAGR---E 467 (729)
Q Consensus 402 g~~~~~~R~~~l~~F~~--g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~---------s~~~yiQriGRagR~G~---~ 467 (729)
|.+++..|...-..|++ +..+||||||++++|||+ +|+.||+|++-. ...+..|..|||||.|. .
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999998 899999999999999999 899999998752 56678899999999874 4
Q ss_pred cEEEEEeccCcHHHHHHHHH
Q 004808 468 GYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 468 G~~i~l~~~~d~~~l~~i~~ 487 (729)
|.+.+|..+ |...++.+.+
T Consensus 468 G~vTtl~~e-DL~~L~~~l~ 486 (700)
T KOG0953|consen 468 GEVTTLHSE-DLKLLKRILK 486 (700)
T ss_pred ceEEEeeHh-hHHHHHHHHh
Confidence 777776544 5566666554
No 146
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=3.4e-15 Score=138.85 Aligned_cols=144 Identities=45% Similarity=0.574 Sum_probs=111.0
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+++++.++||+|||.+++..+...+... ...+++|++|++.++.|+.+.+..+... ++.+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~----~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL----KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc----cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 4689999999999999776666655431 2346999999999999999998887655 6778888887766655555
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
.....+|+|+|++.+...+... ......+.+|||||+|.+....+...........+...+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5678999999999998877654 23456788999999999987654444333445556778899999996
No 147
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.65 E-value=4.1e-14 Score=149.60 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=98.8
Q ss_pred hccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-Cce-EEEEcCccccccCCCCccEEE
Q 004808 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 366 ~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-vLVaTd~~~rGlDi~~v~~VI 443 (729)
.+...-+.|||.+...+.+.+...|+..|++|+.|.|+|+...|..+++.|.+. .+. +|++-.+.+..||+..+.+|+
T Consensus 634 ~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVF 713 (791)
T KOG1002|consen 634 ERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVF 713 (791)
T ss_pred HcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeE
Confidence 344456889999999999999999999999999999999999999999999986 344 577788889999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCC--ccEEEEEeccCc
Q 004808 444 NYACPRDLTSYVHRVGRTARAGR--EGYAVTFVTDND 478 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~--~G~~i~l~~~~d 478 (729)
++|+-|||.--.|...|.+|.|+ +-.++.|+-++.
T Consensus 714 mmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 714 MMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred eecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999999999995 567777776654
No 148
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.1e-14 Score=155.87 Aligned_cols=347 Identities=13% Similarity=0.072 Sum_probs=231.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 004808 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (729)
Q Consensus 136 l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~ 215 (729)
+...+..+.......+|.++|..+..|+++++.-.|.+||.++|.+.....+...+. ...+++.|+.+++......
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~----s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA----TNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc----cceecchhHHHHhhccCCc
Confidence 334445566677889999999999999999999999999999998888776655433 3478889999987533221
Q ss_pred HHHHhh-cc--CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHh-ccCc--cCCCCeeEEEEeCcchhhcC-C-
Q 004808 216 IEKIAQ-FT--DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR-NSMS--VDLDDLAVLILDEADRLLEL-G- 287 (729)
Q Consensus 216 ~~~l~~-~~--~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~-~~~~--~~l~~i~~lVvDEah~ll~~-g- 287 (729)
+.-... -+ .--++-.+.+.+........+.+..++++.|......+- +... ..+-...++++||+|..+-. +
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 430 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKA 430 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhh
Confidence 110000 00 111233455666666666677889999999988765443 2111 12345568899999976532 1
Q ss_pred -hHHHHHHHHHhcC-----cCceEEEEecccchhHHHHHHHhcCCCe-EEecCCCCCCCCCceeEEEEeehh---hhhhH
Q 004808 288 -FSAEIHELVRLCP-----KRRQTMLFSATLTEDVDELIKLSLTKPL-RLSADPSAKRPSTLTEEVVRIRRM---REVNQ 357 (729)
Q Consensus 288 -f~~~i~~il~~~~-----~~~q~il~SATl~~~v~~l~~~~l~~p~-~i~~~~~~~~~~~l~~~~~~~~~~---~~~~k 357 (729)
-...+..+++.+. -+.|++--|||+...+......+-.+.+ .+..+ ..|..-.+.++.-++. ....+
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~~ 507 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSEK 507 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhhh
Confidence 1233344444443 3678888899988776655444433322 22222 2344444444443321 11111
Q ss_pred -------HHHHHHHhhccCCCeEEEEeCcHHHHHHHHH----HHhhcCC----ceeeccCCCCHHHHHHHHHHHhcCCce
Q 004808 358 -------EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI----LFGLAAL----KAAELHGNLTQAQRLEALELFRKQHVD 422 (729)
Q Consensus 358 -------~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~----~L~~~~~----~~~~lhg~~~~~~R~~~l~~F~~g~~~ 422 (729)
..++..++. .+-++|-||+++..|+.+.. .|.+.+- .+..+.|+...++|..+....-.|+..
T Consensus 508 ~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 122233332 35799999999999987643 3333322 244567899999999999999999999
Q ss_pred EEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEec--cCcHHHHHHHHHHhcc
Q 004808 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT--DNDRSLLKAIAKRAGS 491 (729)
Q Consensus 423 vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~--~~d~~~l~~i~~~~~~ 491 (729)
-+|+|++++.||||.+++.|++.++|.|...+.|..||+||.+++..++.++. +-|..++..-....+.
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGS 656 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCC
Confidence 99999999999999999999999999999999999999999888866655544 5576666655444443
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=99.62 E-value=9.6e-16 Score=170.67 Aligned_cols=320 Identities=20% Similarity=0.234 Sum_probs=182.5
Q ss_pred CCCCCcHHHHHHHHHHhcC----CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 144 GYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~g----~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
.-..|+|+|+.+|..++.| ...=+.+.+|+|||++. |-+.+++-. .++|+|+|+..|..|..+.+..-
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~-------~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA-------ARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh-------hheEeecchHHHHHHHHHHHhhc
Confidence 4457999999999999885 12334566899999884 777777633 46999999999998876655432
Q ss_pred hhccCceEEEEecCCChH-----------------------HHH--HHHhcCCCeEEECchHHHHHHhccCccCCCCeeE
Q 004808 220 AQFTDIRCCLVVGGLSTK-----------------------MQE--TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (729)
Q Consensus 220 ~~~~~i~v~~~~gg~~~~-----------------------~~~--~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~ 274 (729)
. ...++...++...... ..+ ..-..+--||++|+..|...-... ...+..+++
T Consensus 230 ~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ-e~G~~~fDl 307 (1518)
T COG4889 230 K-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ-EAGLDEFDL 307 (1518)
T ss_pred c-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-HcCCCCccE
Confidence 1 1345544444432110 000 001123469999999987654432 455789999
Q ss_pred EEEeCcchhhcCChHHHHHHHHHhcC-----cCceEEEEecccch---hHHHHHHH------------------------
Q 004808 275 LILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTE---DVDELIKL------------------------ 322 (729)
Q Consensus 275 lVvDEah~ll~~gf~~~i~~il~~~~-----~~~q~il~SATl~~---~v~~l~~~------------------------ 322 (729)
||+||||+.........-..-...++ +....+.++||+.- .....+..
T Consensus 308 iicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fg 387 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFG 387 (1518)
T ss_pred EEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHH
Confidence 99999999542111000000000010 12235788888741 11111110
Q ss_pred ------hcCCC--eEEecCCCCCCCCCceeEEEEeehhhhhhHHHHH----HHHhh--------------ccCCCeEEEE
Q 004808 323 ------SLTKP--LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL----LSLCS--------------KTFTSKVIIF 376 (729)
Q Consensus 323 ------~l~~p--~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l----~~l~~--------------~~~~~~vLIF 376 (729)
.+... +.+.++... ....+..........-.......+ ..+.+ ..+..+.|-|
T Consensus 388 eAv~rdlLTDYKVmvlaVd~~~-i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF 466 (1518)
T COG4889 388 EAVERDLLTDYKVMVLAVDKEV-IAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAF 466 (1518)
T ss_pred HHHHhhhhccceEEEEEechhh-hhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHH
Confidence 00000 011111000 000000000000000000000000 00111 1112467889
Q ss_pred eCcHHHHHHHHHHHhh---------------cCCceeeccCCCCHHHHHHHHH---HHhcCCceEEEEcCccccccCCCC
Q 004808 377 SGTKQAAHRLKILFGL---------------AALKAAELHGNLTQAQRLEALE---LFRKQHVDFLIATDVAARGLDIIG 438 (729)
Q Consensus 377 ~~s~~~~~~l~~~L~~---------------~~~~~~~lhg~~~~~~R~~~l~---~F~~g~~~vLVaTd~~~rGlDi~~ 438 (729)
|.+.+....++..|.. ..+++..+.|.|...+|...+. .|....++||-....+++|+|+|.
T Consensus 467 ~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPa 546 (1518)
T COG4889 467 AKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPA 546 (1518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccc
Confidence 9988877776665531 2345667789999999965554 345678889999999999999999
Q ss_pred ccEEEEeCCCCChhhHHHHhccccc-C-CC-ccEEEEEe
Q 004808 439 VQTVINYACPRDLTSYVHRVGRTAR-A-GR-EGYAVTFV 474 (729)
Q Consensus 439 v~~VI~~d~P~s~~~yiQriGRagR-~-G~-~G~~i~l~ 474 (729)
++.||+|++-.+..+.+|.+||+.| + |+ -|+.|+=+
T Consensus 547 LDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 547 LDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred cceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 9999999999999999999999999 2 22 35555443
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2.5e-13 Score=157.54 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=92.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCCC--------Cc
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII--------GV 439 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLVaTd~~~rGlDi~--------~v 439 (729)
.+.+|||-|.|....+.|..+|...|++.-+|+......+-.-+-+ .| .-.|-|||++|+||.||. |=
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~GG 703 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAGG 703 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcCC
Confidence 5789999999999999999999999999888888655443332222 34 345999999999999996 45
Q ss_pred cEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 440 ~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
=|||-...|.|...--|-.||+||.|.+|.+..|++-.|.-+
T Consensus 704 L~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 704 LAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 689999999999999999999999999999999999776443
No 151
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.55 E-value=2.3e-14 Score=140.68 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=101.0
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 147 KPTPIQAACIPLALT-------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~-------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
.|+++|.+++..++. ++.+++.+|||||||.+++..+... .. ++||++|+..|+.|+.+.+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 478999999998884 5899999999999999875444443 22 6999999999999999999665
Q ss_pred hhccCceE-----------EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccC----------ccCCCCeeEEEEe
Q 004808 220 AQFTDIRC-----------CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM----------SVDLDDLAVLILD 278 (729)
Q Consensus 220 ~~~~~i~v-----------~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~----------~~~l~~i~~lVvD 278 (729)
........ ....................+|+++|...|........ ......+.+||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 43211000 00111111112222234567899999999987765321 1234567899999
Q ss_pred CcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
|||++.... .+..++. .....+|+||||+.
T Consensus 154 EaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 999986432 1444444 45667899999985
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=9.9e-14 Score=152.48 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=95.6
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc--CCceE-EEEcCccccccCCCCccEEE
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDF-LIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~v-LVaTd~~~rGlDi~~v~~VI 443 (729)
.....+++|..........++..+...|..+..+||.....+|+.+++.|+. |..+| ||+-.+.+-|||+.+.+|+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 3446789999988888899999999999999999999999999999999984 44555 55667778999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCCccEEEE--EeccCc
Q 004808 444 NYACPRDLTSYVHRVGRTARAGREGYAVT--FVTDND 478 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~~G~~i~--l~~~~d 478 (729)
..|+.|||+--.|.+.|..|.|+...+++ |++..+
T Consensus 823 lvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 823 LVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred EEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 99999999999999999999998765554 444443
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.55 E-value=1.3e-12 Score=154.22 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=79.9
Q ss_pred HHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCc-eeeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCCC
Q 004808 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDII 437 (729)
Q Consensus 360 ~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~l~~F~~g~~-~vLVaTd~~~rGlDi~ 437 (729)
.+..++... ++++|||++|+..+..+...|...... ....+|..+ +...++.|..+.- .+||+|..+++|+|+|
T Consensus 470 ~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 344444444 459999999999999999999876553 344455444 4478888887665 8999999999999999
Q ss_pred C--ccEEEEeCCCCC------------------------------hhhHHHHhcccccCCCc-cEEEEE
Q 004808 438 G--VQTVINYACPRD------------------------------LTSYVHRVGRTARAGRE-GYAVTF 473 (729)
Q Consensus 438 ~--v~~VI~~d~P~s------------------------------~~~yiQriGRagR~G~~-G~~i~l 473 (729)
+ +..||+..+|.- .....|.+||+-|.-.. |.++++
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 7 588998888752 22446999999994433 444433
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=6.4e-12 Score=147.77 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=59.8
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHh----cCCceEEEEcCccccccCCCC--ccE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDIIG--VQT 441 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~----~g~~~vLVaTd~~~rGlDi~~--v~~ 441 (729)
.++++|||++|+.....+...|... +.. ...+|.. .+..+++.|+ .|...||++|..+.+|||+|| +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3556999999999999999988643 333 3445532 4667776666 467889999999999999998 789
Q ss_pred EEEeCCCC
Q 004808 442 VINYACPR 449 (729)
Q Consensus 442 VI~~d~P~ 449 (729)
||...+|.
T Consensus 609 vII~kLPF 616 (697)
T PRK11747 609 VIITKIPF 616 (697)
T ss_pred EEEEcCCC
Confidence 99988774
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.52 E-value=3.6e-14 Score=119.78 Aligned_cols=81 Identities=47% Similarity=0.724 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccC
Q 004808 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464 (729)
Q Consensus 385 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~ 464 (729)
.+..+|...++.+..+||.++..+|..++..|+.|...|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677878899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 004808 465 G 465 (729)
Q Consensus 465 G 465 (729)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=2.3e-12 Score=152.62 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=59.9
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 143 LGYSKPTPIQAACIPLA----LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~l----l~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
+.|..++|.|.+.+..+ ..|.++++.+|||+|||++.+.|+|..+...+ ..+++++++.|..-..|+.+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---EVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---ccccEEEEcccchHHHHHHHHHHh
Confidence 45777799998877554 45889999999999999999999988765433 235799999999888888888887
Q ss_pred Hh
Q 004808 219 IA 220 (729)
Q Consensus 219 l~ 220 (729)
+.
T Consensus 83 ~~ 84 (705)
T TIGR00604 83 LM 84 (705)
T ss_pred hh
Confidence 53
No 157
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.50 E-value=1.8e-12 Score=158.23 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=96.5
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC--CceEEEEcCccccccCCCCccEEEEeCCCC
Q 004808 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPR 449 (729)
Q Consensus 372 ~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~ 449 (729)
++|||++.......+..+|...++.+..++|.++...|...++.|.++ ..-+|++|.+++.|||+.+.++||+||+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999999999999999999999999999986 455778889999999999999999999999
Q ss_pred ChhhHHHHhcccccCCCccEEEE--EeccCc
Q 004808 450 DLTSYVHRVGRTARAGREGYAVT--FVTDND 478 (729)
Q Consensus 450 s~~~yiQriGRagR~G~~G~~i~--l~~~~d 478 (729)
|+....|.+.|+.|.|+...+.+ +++.+.
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999998755444 444443
No 158
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.49 E-value=1.2e-12 Score=151.48 Aligned_cols=314 Identities=17% Similarity=0.237 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHH-HHHHHHhhccC
Q 004808 147 KPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFTD 224 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~-~~~~~l~~~~~ 224 (729)
...|+|.++++.+.+. .++++++|+|||||+++-+.++. + .+..+++.+.|.-+.+..++ .+-.++....|
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~--~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P--DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C--ccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 3478999999888774 57889999999999987776664 2 35668999999999987544 55567766688
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC-C-----hHHHHHHHHHh
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-G-----FSAEIHELVRL 298 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-g-----f~~~i~~il~~ 298 (729)
..+..+.|..+... .+....+|+|+||++.-.+ + ....+++.|+||+|.+... | ... +..|-..
T Consensus 1216 ~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q 1285 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQ 1285 (1674)
T ss_pred ceEEecCCccccch---HHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHH
Confidence 88888888776543 3455679999999997443 2 3567889999999987632 1 112 4455556
Q ss_pred cCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH-----HHHHHHhh-ccCCCe
Q 004808 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-----AVLLSLCS-KTFTSK 372 (729)
Q Consensus 299 ~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~-----~~l~~l~~-~~~~~~ 372 (729)
+-+..+++.+|..+.+. .++ ..+...-.+... ...++..+.-++..+......... ..+..+++ ...+.+
T Consensus 1286 ~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~-p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANA-RDL--IGASSSGVFNFS-PSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccc-hhh--ccccccceeecC-cccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 66778889999887643 333 223222223332 233444444433333322111111 11122222 234678
Q ss_pred EEEEeCcHHHHHHHHHHHhh----------------------cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 004808 373 VIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (729)
Q Consensus 373 vLIF~~s~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~ 430 (729)
.+||+++++.+..++.-|-. ..+..++=|.+|+..+..-+...|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 99999999988876443310 1123333389999999999999999999999988766
Q ss_pred ccccCCCCccEEE----EeC------CCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHH
Q 004808 431 ARGLDIIGVQTVI----NYA------CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (729)
Q Consensus 431 ~rGlDi~~v~~VI----~~d------~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i 485 (729)
..|+-...--+|| .|| .+.......|++|+|.| .|.|++++......+++.+
T Consensus 1441 ~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 6676654333333 233 34467889999999998 5689999988887777654
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.46 E-value=3.7e-12 Score=143.38 Aligned_cols=135 Identities=20% Similarity=0.284 Sum_probs=104.5
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh----------------------cCCceeeccCCCCHHHHHHHHHHHhcCC----c
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQH----V 421 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~R~~~l~~F~~g~----~ 421 (729)
..+.++|||.++......+..+|.. .|..+..|.|.....+|......|++-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3578999999999999999888853 2456788999999999999999999742 3
Q ss_pred eEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEE--eccCcHHHHHHHHH--Hhccccchhh
Q 004808 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF--VTDNDRSLLKAIAK--RAGSKLKSRI 497 (729)
Q Consensus 422 ~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l--~~~~d~~~l~~i~~--~~~~~~~~~~ 497 (729)
-+||+|.+.+.|||+-.++.||+||..|||.--+|.|=|+.|.|+..-||+| +.... +-..|.+ .+...+..++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT--mEeKIYkRQVTKqsls~RV 1297 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT--MEEKIYKRQVTKQSLSFRV 1297 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc--HHHHHHHHHHhHhhhhhhh
Confidence 4899999999999999999999999999999999999999999987666655 44332 2222222 2223344566
Q ss_pred hhhhhHH
Q 004808 498 VAEQSIT 504 (729)
Q Consensus 498 ~~~~~~~ 504 (729)
|+.+.+.
T Consensus 1298 VDeqQv~ 1304 (1567)
T KOG1015|consen 1298 VDEQQVE 1304 (1567)
T ss_pred hhHHHHH
Confidence 6665443
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.46 E-value=7e-12 Score=145.11 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=93.5
Q ss_pred cCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH----HHHh
Q 004808 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALR 244 (729)
Q Consensus 169 a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~----~~l~ 244 (729)
+.+|||||.+| +.++...+..+ ..+|||+|...|..|+...|.... .+..+..++++.+..... ....
T Consensus 167 ~~~GSGKTevy-l~~i~~~l~~G-----k~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 167 ALPGEDWARRL-AAAAAATLRAG-----RGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred cCCCCcHHHHH-HHHHHHHHHcC-----CeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHHHhC
Confidence 34699999998 55555555443 359999999999999999998643 236788899988766432 2334
Q ss_pred cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh--cC-C--hHHHHHHHHHhcCcCceEEEEecccchhHHHH
Q 004808 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL--EL-G--FSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (729)
Q Consensus 245 ~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll--~~-g--f~~~i~~il~~~~~~~q~il~SATl~~~v~~l 319 (729)
+...|||+|-.-+ ...+.++.+|||||=|.-. +. + +...-..++.....+..+|+-|||++-+...+
T Consensus 239 G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 5589999994332 3457889999999999644 11 1 22222233344445778999999998666554
Q ss_pred H
Q 004808 320 I 320 (729)
Q Consensus 320 ~ 320 (729)
+
T Consensus 311 ~ 311 (665)
T PRK14873 311 V 311 (665)
T ss_pred H
Confidence 4
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.34 E-value=9.5e-11 Score=137.16 Aligned_cols=311 Identities=20% Similarity=0.158 Sum_probs=178.9
Q ss_pred CcHHHHHHHHHHhc--------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 148 PTPIQAACIPLALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 148 pt~iQ~~~i~~ll~--------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
-+.+|-.|+..+.. |-=+|-.|.||+|||++= .-|+..|-.. ..+.|+.|-.-.|.|-.|.-+.++.-
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~---~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDD---KQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCC---CCCceEEEEccccceeccchHHHHHh
Confidence 45799999888765 222567899999999874 4444444222 24568999999999999999998886
Q ss_pred hhccCceEEEEecCCChHHHHH-------------------------------------------HHh--------cCCC
Q 004808 220 AQFTDIRCCLVVGGLSTKMQET-------------------------------------------ALR--------SMPD 248 (729)
Q Consensus 220 ~~~~~i~v~~~~gg~~~~~~~~-------------------------------------------~l~--------~~~d 248 (729)
.....-...+++|+.....-.. .+. -...
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 6655666677777633211000 000 0157
Q ss_pred eEEECchHHHHHHhc--cCccCCC----CeeEEEEeCcchhhcCChHHHHHHHHHhcC-cCceEEEEecccchhHHHHHH
Q 004808 249 IVVATPGRMIDHLRN--SMSVDLD----DLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 249 IvI~TP~~L~~~l~~--~~~~~l~----~i~~lVvDEah~ll~~gf~~~i~~il~~~~-~~~q~il~SATl~~~v~~l~~ 321 (729)
|+|||+..++..... .....+. .-+.|||||+|..-... ...+..++..+. -...+|++|||+|+.+...+.
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 999999999877622 1111111 13489999999864322 223334443222 356789999999988765432
Q ss_pred H-----------hcCC---CeEEe---cCCCCCCCCCc----------------------------eeEEEEeehhhh--
Q 004808 322 L-----------SLTK---PLRLS---ADPSAKRPSTL----------------------------TEEVVRIRRMRE-- 354 (729)
Q Consensus 322 ~-----------~l~~---p~~i~---~~~~~~~~~~l----------------------------~~~~~~~~~~~~-- 354 (729)
. .... |+.+. ++........+ .-.++.+.....
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 2 1221 21111 11100000000 000111111100
Q ss_pred hhHH--------HHHHHHhh----ccC--CCe---EEEEeCcHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHH
Q 004808 355 VNQE--------AVLLSLCS----KTF--TSK---VIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLE 411 (729)
Q Consensus 355 ~~k~--------~~l~~l~~----~~~--~~~---vLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~ 411 (729)
.... ..+..++. ..+ +.+ .||-+.++..+..++..|-.. .+.+.+||+..+...|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 0000 01111111 111 111 356666666666666665432 345788999988877766
Q ss_pred HHHHH----------------------hc----CCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCC
Q 004808 412 ALELF----------------------RK----QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (729)
Q Consensus 412 ~l~~F----------------------~~----g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G 465 (729)
+.+.. .+ +...|+|+|.+++.|+|+ +.+++|- -|.+..+.+||+||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 55442 12 456799999999999998 5666653 3556889999999999966
Q ss_pred C
Q 004808 466 R 466 (729)
Q Consensus 466 ~ 466 (729)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 4
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.26 E-value=2.4e-10 Score=130.70 Aligned_cols=287 Identities=17% Similarity=0.219 Sum_probs=173.8
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~ 244 (729)
.++.+|+|||||.+. +..|...+.. +..++|+|..++.|+.++...+.... ..++....-..+.. +.
T Consensus 52 ~vVRSpMGTGKTtaL-i~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~-l~gFv~Y~d~~~~~-------i~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL-IRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAG-LSGFVNYLDSDDYI-------ID 118 (824)
T ss_pred EEEECCCCCCcHHHH-HHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcC-CCcceeeecccccc-------cc
Confidence 569999999999875 4555444322 33469999999999999988887531 11222111111110 11
Q ss_pred -cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHH------H-HHHHhcCcCceEEEEecccchhH
Q 004808 245 -SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI------H-ELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 245 -~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i------~-~il~~~~~~~q~il~SATl~~~v 316 (729)
...+-+++....|.... .-.+.++++|||||+-..++.-|...+ . .+...+.....+|++-||+....
T Consensus 119 ~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 12467777777775543 223677999999999987764332222 2 23344556678999999999999
Q ss_pred HHHHHHhcCC-CeEEecCCCCCCCCCceeEEEEeehh---------------------------------hhhhHHHHHH
Q 004808 317 DELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRM---------------------------------REVNQEAVLL 362 (729)
Q Consensus 317 ~~l~~~~l~~-p~~i~~~~~~~~~~~l~~~~~~~~~~---------------------------------~~~~k~~~l~ 362 (729)
.+++...... ++.+.... ...+.-.....+..+.. ..........
T Consensus 195 vdFl~~~Rp~~~i~vI~n~-y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNT-YASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEee-eecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 8888776443 23222211 11100000000000000 0001111122
Q ss_pred HHhhc-cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCc--
Q 004808 363 SLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV-- 439 (729)
Q Consensus 363 ~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v-- 439 (729)
.+... ..+.++-||+.|...++.+..+.......+..++|.-+..+. +. =++.+|+++|.++.-|+++...
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhc
Confidence 22222 235678899999999999999999889999999887665522 22 2478999999999999999654
Q ss_pred cEEEEeCCCC----ChhhHHHHhcccccCCCccEEEEEecc
Q 004808 440 QTVINYACPR----DLTSYVHRVGRTARAGREGYAVTFVTD 476 (729)
Q Consensus 440 ~~VI~~d~P~----s~~~yiQriGRagR~G~~G~~i~l~~~ 476 (729)
+-|+-|=-|. +..+..|++||+-... ....+++++.
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 4455553232 3456789999975443 4566666654
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.23 E-value=2e-11 Score=129.81 Aligned_cols=156 Identities=21% Similarity=0.163 Sum_probs=94.7
Q ss_pred HHHHHHHHHh-------------cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 151 IQAACIPLAL-------------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 151 iQ~~~i~~ll-------------~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
+|..++.+++ ..+.+|++..+|+|||++. +.++..+...........+|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5777777763 3467999999999999885 4444444433322222359999999 77789999999
Q ss_pred HHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHH-----HHHhccCccCCCCeeEEEEeCcchhhcCChHHHH
Q 004808 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (729)
Q Consensus 218 ~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~-----~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i 292 (729)
.++....+++..+.|...............+|+|+|+..+. .... .+.-..+.+|||||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~---~l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE---DLKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH---HHHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccc---ccccccceeEEEeccccccccc--ccc
Confidence 98765567777766665122112222345789999999998 2111 1222348999999999995433 233
Q ss_pred HHHHHhcCcCceEEEEecccch
Q 004808 293 HELVRLCPKRRQTMLFSATLTE 314 (729)
Q Consensus 293 ~~il~~~~~~~q~il~SATl~~ 314 (729)
...+..+. ....+++|||+..
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccc-cceEEeecccccc
Confidence 33344444 6677999999753
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.20 E-value=6e-10 Score=128.35 Aligned_cols=314 Identities=19% Similarity=0.178 Sum_probs=191.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceE
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v 227 (729)
|+.+|.-.. +.....-++.+.||-|||++..+|+.-..+.. -.|.||+..--||..-.+++..+..+.|+.+
T Consensus 81 ~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~g------kgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALAG------KGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcCC------CCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 455665444 44444578999999999999999987554433 2378888889999999999999999999999
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhcc-----CccCCCCeeEEEEeCcchhh-c---------C---C-
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLL-E---------L---G- 287 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~ll-~---------~---g- 287 (729)
++...+.+....... -.+||.++|...| .++|+.+ .......+.+.|+||+|-++ + + +
T Consensus 153 G~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 999999877655543 3479999997665 3333322 12224567899999999854 1 1 0
Q ss_pred --hHHHHHHHHHhcCc---------------------------------------------------------------C
Q 004808 288 --FSAEIHELVRLCPK---------------------------------------------------------------R 302 (729)
Q Consensus 288 --f~~~i~~il~~~~~---------------------------------------------------------------~ 302 (729)
+...+..+...+.. .
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 12222222211110 0
Q ss_pred ceEEEE------------------------------------------------------ecccchhHHHHHHHhcCCCe
Q 004808 303 RQTMLF------------------------------------------------------SATLTEDVDELIKLSLTKPL 328 (729)
Q Consensus 303 ~q~il~------------------------------------------------------SATl~~~v~~l~~~~l~~p~ 328 (729)
-.++++ |.|...+..++...+....+
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 111221 11111111111111111111
Q ss_pred EEecCCCCCCCCCceeEEEEeehhhhhhHH-HHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCH
Q 004808 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406 (729)
Q Consensus 329 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~-~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~ 406 (729)
.+.......+. .....+. .....+. +++..++. ...+.+|||-+.+....+.+..+|...|++-.+|+..-..
T Consensus 391 ~iPTnrp~~R~-D~~D~vy----~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 391 VIPTNRPIIRL-DEPDLVY----KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred eccCCCcccCC-CCccccc----cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 11100000000 0000000 0112222 33333332 3457899999999999999999999999998888876663
Q ss_pred HHHHHHHHHHhcCC-ceEEEEcCccccccCCCCcc-----------EEEEeCCCCChhhHHHHhcccccCCCccEEEEEe
Q 004808 407 AQRLEALELFRKQH-VDFLIATDVAARGLDIIGVQ-----------TVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474 (729)
Q Consensus 407 ~~R~~~l~~F~~g~-~~vLVaTd~~~rGlDi~~v~-----------~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~ 474 (729)
.+-..+ .+ .|. --|-|||++|+||-||.--. +||-..-..|-..--|-.||+||.|-+|.+..|+
T Consensus 466 ~EA~Ii--a~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 466 REAEII--AQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHHHH--hh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 333322 22 343 35889999999999995322 4666666666666779999999999999999888
Q ss_pred ccCcH
Q 004808 475 TDNDR 479 (729)
Q Consensus 475 ~~~d~ 479 (729)
+-.|.
T Consensus 543 SleD~ 547 (822)
T COG0653 543 SLEDD 547 (822)
T ss_pred hhHHH
Confidence 86653
No 165
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.15 E-value=1.6e-10 Score=130.35 Aligned_cols=312 Identities=18% Similarity=0.200 Sum_probs=192.0
Q ss_pred HHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH-hhccCceEEEEec
Q 004808 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRCCLVVG 232 (729)
Q Consensus 154 ~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l-~~~~~i~v~~~~g 232 (729)
.++..+..+.-+++.+.||+|||..+...+|+.++......-. -+.+..|||..+.-+.+.+..- +...+-.|++-+.
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~-na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASF-NAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccc-cceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 3344444566677999999999999999999999887664322 3788899998888777655432 1111222211111
Q ss_pred CCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 233 g~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
-. ...-...--|++||-+.|+..+.+. +..+.++|+||.|..- +..|...+..-+.-..+...++++|||
T Consensus 464 f~-----Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 464 FD-----SATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred cc-----ccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 10 0001112358999999999988764 5678899999999754 344554444434444445556666666
Q ss_pred cchhHHHH--------------------HHHhcCCCeEEecCCCCCCCCC-ceeE---E---------EEeeh-------
Q 004808 312 LTEDVDEL--------------------IKLSLTKPLRLSADPSAKRPST-LTEE---V---------VRIRR------- 351 (729)
Q Consensus 312 l~~~v~~l--------------------~~~~l~~p~~i~~~~~~~~~~~-l~~~---~---------~~~~~------- 351 (729)
+..++... ....+..++...-......... ..+. . ....+
T Consensus 535 IdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 535 IDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred cchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 65432211 1111111111000000000000 0000 0 00000
Q ss_pred -----hh-----hhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHH
Q 004808 352 -----MR-----EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALE 414 (729)
Q Consensus 352 -----~~-----~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~l~ 414 (729)
.. ...-...+..+......+-++||.+.-..+..|..+|... .+.++.+|+.+...+...+.+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~ 694 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFE 694 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccC
Confidence 00 0000122233334555678999999999999888887543 467889999999999999999
Q ss_pred HHhcCCceEEEEcCccccccCCCCccEEEEeCCC------------------CChhhHHHHhcccccCCCccEEEEEecc
Q 004808 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACP------------------RDLTSYVHRVGRTARAGREGYAVTFVTD 476 (729)
Q Consensus 415 ~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P------------------~s~~~yiQriGRagR~G~~G~~i~l~~~ 476 (729)
....|..++++.|+++...+.|.++.+||.-+.- .+....+||.||+||. ++|.|..+++.
T Consensus 695 ~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 695 PVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 9999999999999999999999998888753322 1455678999999994 68999888764
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.12 E-value=5.2e-10 Score=102.92 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=79.6
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
|+-.++-..+|+|||.-.+--++...+.+ +.++|||.|||.++..+.+.+... ++++. ..-...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-----~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-----RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-----cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeeec-----
Confidence 33456888999999987544445444443 346999999999998887777532 33322 111110
Q ss_pred HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC--hHHHHHHHHHhcCcCceEEEEecccchhH
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~il~~~~~~~q~il~SATl~~~v 316 (729)
....+.-|-++|++.+...+.+ ...+.++++||+||||.+-.+. +...+..+-. . ....+|++|||+|-..
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCCCC
Confidence 1234556889999998888776 4557899999999999854322 2233333222 1 2357999999998654
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.10 E-value=3.7e-08 Score=119.27 Aligned_cols=299 Identities=19% Similarity=0.201 Sum_probs=161.8
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+..+|+--||||||++. +.+.+.+... ...|.|+||+-++.|-.|+.+.+..+........ ...+...-...
T Consensus 274 ~~G~IWHtqGSGKTlTm-~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLTM-FKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHHH-HHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 46999999999999873 3343444333 3456899999999999999999998765322211 33444444455
Q ss_pred HhcC-CCeEEECchHHHHHHhccCcc-CCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHH-
Q 004808 243 LRSM-PDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL- 319 (729)
Q Consensus 243 l~~~-~dIvI~TP~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l- 319 (729)
+... ..|||||-+.|-..+...... .-..-=+||+||||+-- .|+.. ..+...-++...++||+||--.-...
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~~~---~~~~~~~~~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGELA---KLLKKALKKAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc-ccHHH---HHHHHHhccceEEEeeCCccccccccc
Confidence 5544 489999999987776543111 11222378999999843 22221 12222223477899999985322211
Q ss_pred HHHhcCCCeEE-ecCCCCCCCCCceeEEE---Eeehhhh--------------------hhH------------------
Q 004808 320 IKLSLTKPLRL-SADPSAKRPSTLTEEVV---RIRRMRE--------------------VNQ------------------ 357 (729)
Q Consensus 320 ~~~~l~~p~~i-~~~~~~~~~~~l~~~~~---~~~~~~~--------------------~~k------------------ 357 (729)
....+...+.. .+.........+...+. .+..... ...
T Consensus 422 t~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~ 501 (962)
T COG0610 422 TKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRL 501 (962)
T ss_pred hhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHH
Confidence 11111221111 11111111111100000 0000000 000
Q ss_pred ----HHHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhc---------------------CCceeec--cCCCCHHHH
Q 004808 358 ----EAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLA---------------------ALKAAEL--HGNLTQAQR 409 (729)
Q Consensus 358 ----~~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~---------------------~~~~~~l--hg~~~~~~R 409 (729)
..+...+.. ...+.++.+.|.++..+..+.+..... +...... |... ....
T Consensus 502 ~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 580 (962)
T COG0610 502 IRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEK 580 (962)
T ss_pred HHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHH
Confidence 000111112 334567777777777444444332211 0000000 1111 1222
Q ss_pred HHHHHH--HhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhccccc--CC-Cc-cEEEEEec
Q 004808 410 LEALEL--FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR--AG-RE-GYAVTFVT 475 (729)
Q Consensus 410 ~~~l~~--F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR--~G-~~-G~~i~l~~ 475 (729)
...... +.....++||.++++-.|+|.|.++++. +|-|--....+|.+-||.| .+ ++ |.++-|+.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333334 3456789999999999999999888765 6777788899999999999 33 23 55555555
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.2e-09 Score=115.40 Aligned_cols=75 Identities=28% Similarity=0.286 Sum_probs=59.8
Q ss_pred CCCCCcHHHHH----HHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 144 GYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 144 g~~~pt~iQ~~----~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
.|. |+|.|.+ ++..+..|.++|+.||||+|||++|++|++..+...+....+.+++|+++|..+..|....++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 454 6999998 55666678999999999999999999999987765443223447999999999988887777654
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.2e-09 Score=115.40 Aligned_cols=75 Identities=28% Similarity=0.286 Sum_probs=59.8
Q ss_pred CCCCCcHHHHH----HHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 144 GYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 144 g~~~pt~iQ~~----~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
.|. |+|.|.+ ++..+..|.++|+.||||+|||++|++|++..+...+....+.+++|+++|..+..|....++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 454 6999998 55666678999999999999999999999987765443223447999999999988887777654
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.94 E-value=8.4e-08 Score=106.95 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=106.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc------------------CCceeeccCCCCHHHHHHHHHHHhcC---CceEEEEcC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA------------------ALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATD 428 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~------------------~~~~~~lhg~~~~~~R~~~l~~F~~g---~~~vLVaTd 428 (729)
+.++|||.........+..+|... +.+.+.+.|..+..+|.+.+.+|++- ..-|||+|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 578999999999999999988643 24566789999999999999999864 245899999
Q ss_pred ccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh--ccccchhhhhh
Q 004808 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRIVAE 500 (729)
Q Consensus 429 ~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~--~~~~~~~~~~~ 500 (729)
....||++-+.+.+|.||.-|++.--.|.+.|+.|.|+...|++|-.--|..+-+.|..+. +.-|..+++++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd 872 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDD 872 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcc
Confidence 9999999999999999999999999999999999999988888887666666666665442 12244455544
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.78 E-value=1.5e-07 Score=97.16 Aligned_cols=131 Identities=26% Similarity=0.327 Sum_probs=97.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+ .|++.|..++-.+..|+ |+...||-|||++..+|++-..+. +..|=|++....||.+=++++..+..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 444 58999999987777776 999999999999888887766543 334889999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHH-HHHhccC----cc-CCCCeeEEEEeCcchhh
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI-DHLRNSM----SV-DLDDLAVLILDEADRLL 284 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~-~~l~~~~----~~-~l~~i~~lVvDEah~ll 284 (729)
.|+.+++++++.+........ .++|+++|...|. ++|+... .. ....+.++||||||.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999988765433322 3589999998774 4554321 11 25788899999999876
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.44 E-value=5e-06 Score=98.46 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=55.0
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
+.....|+++||..|..-|-.+ .+.+..|..|||||||++....-...+..+.+...+..-+.+|||.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3445679999999997666554 688999999999999999865556666677776666777899999875
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.34 E-value=3.4e-06 Score=99.96 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=53.1
Q ss_pred CceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccC-----CC----ccEEE-EEeccCcHHHHHHHHHHh
Q 004808 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-----GR----EGYAV-TFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 420 ~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~-----G~----~G~~i-~l~~~~d~~~l~~i~~~~ 489 (729)
..++|++-.++.+|.|-|+|-.+..+.-..|...-.|.+||.-|. |. ....+ ++++.....+...|+..+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888999999999999883 21 11223 334555666666666544
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.33 E-value=1.4e-06 Score=101.01 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=89.9
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC-ceE-EEEcCccccccCCCCccEEEEeCCCC
Q 004808 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDF-LIATDVAARGLDIIGVQTVINYACPR 449 (729)
Q Consensus 372 ~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~-~~v-LVaTd~~~rGlDi~~v~~VI~~d~P~ 449 (729)
.+|||+.-...+..+...|...++.+..+.|.|+...|.+.+..|..+. ..| |++.-+.+-||++..+.+|+..|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999988889999999999999999999999999654 333 55788889999999999999999999
Q ss_pred ChhhHHHHhcccccCCCccEEEE
Q 004808 450 DLTSYVHRVGRTARAGREGYAVT 472 (729)
Q Consensus 450 s~~~yiQriGRagR~G~~G~~i~ 472 (729)
||..--|.+-|++|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999997654443
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.32 E-value=2.2e-05 Score=89.89 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=57.3
Q ss_pred CCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccC--CCccE-----------EEEEeccCcHHHHHHH
Q 004808 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGY-----------AVTFVTDNDRSLLKAI 485 (729)
Q Consensus 419 g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~--G~~G~-----------~i~l~~~~d~~~l~~i 485 (729)
...++|.+-.++.+|.|=|+|=+++-+....|..+=+|-+||.-|. +..|. -.++++..+..+++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999882 23332 2345667778888887
Q ss_pred HHHh
Q 004808 486 AKRA 489 (729)
Q Consensus 486 ~~~~ 489 (729)
++.+
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 7654
No 176
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.29 E-value=0.00011 Score=84.80 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=51.0
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHHHhc--------CCceEEEEcCccc
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFRK--------QHVDFLIATDVAA 431 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~l~~F~~--------g~~~vLVaTd~~~ 431 (729)
+..+.++|||++++...+.+..+.... ++.- .+.+=-+..+-.+++..|-+ |-.-+.||-.-++
T Consensus 558 rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 558 RVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred hhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 334567999999999888885544322 1211 11221133333444555543 3345677778889
Q ss_pred cccCCCC--ccEEEEeCCCC
Q 004808 432 RGLDIIG--VQTVINYACPR 449 (729)
Q Consensus 432 rGlDi~~--v~~VI~~d~P~ 449 (729)
+|||+.+ .+.||..++|.
T Consensus 637 EGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 637 EGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCCCccccCCceeEEecCCC
Confidence 9999965 77899999885
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.24 E-value=9.3e-06 Score=82.61 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHhcCCC-EEEEcCCCchhhHHhhhhhhHHHhcC---CCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 148 PTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~d-vlv~a~TGsGKT~a~~lpil~~l~~~---~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
+.+-|..++..++.... .+|.||+|+|||.+ +..++..++.+ .....+.++||++|+...+.++.+.+..
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999999999998 89999999999965 34455555211 0112455799999999999998888776
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.23 E-value=4e-06 Score=81.38 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=61.3
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC--ccccccCCCC
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATD--VAARGLDIIG 438 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd--~~~rGlDi~~ 438 (729)
.++... ++++|||++|+...+.+...+..... ....+.. ....+..+++.|+.+...||+++. .+.+|||+++
T Consensus 3 ~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 344433 58999999999999999999876532 2222332 345788899999999999999999 9999999997
Q ss_pred --ccEEEEeCCCC
Q 004808 439 --VQTVINYACPR 449 (729)
Q Consensus 439 --v~~VI~~d~P~ 449 (729)
++.||...+|.
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 88899999885
No 179
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.20 E-value=9e-07 Score=102.68 Aligned_cols=131 Identities=24% Similarity=0.312 Sum_probs=95.5
Q ss_pred CcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 148 PTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 148 pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
+.|+|...+-.+.. ..++++.+|||+|||.+|-+.++..+...+ ..++++++|...|+..-.+.........|++
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p----~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP----GSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC----CccEEEEcCCchhhcccccchhhhcccCCce
Confidence 34555555433322 457889999999999999988887766543 3579999999999876555555544446888
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccC-ccCCCCeeEEEEeCcchhhc
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~-~~~l~~i~~lVvDEah~ll~ 285 (729)
+.-+.|....... -...++|+|+||++.-.+.++.. .-.+.++.++|+||.|.+..
T Consensus 1004 ~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred eEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 8888888765522 23457999999999888776432 23478899999999998764
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.02 E-value=3.3e-05 Score=76.99 Aligned_cols=124 Identities=25% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 147 KPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~--dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
++++-|.+++..++.+. -+++.|+.|+|||.+ +-.+...+... +.+|++++||...+..+.+.+ +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-----g~~v~~~apT~~Aa~~L~~~~-------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-----GKRVIGLAPTNKAAKELREKT-------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHH-------T
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-----CCeEEEECCcHHHHHHHHHhh-------C
Confidence 37889999999998654 366889999999975 34444444432 346999999998877654441 2
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccC---ccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCc
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~---~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~ 301 (729)
+.+ .|-..++....... ...+....+||||||-.+. ...+..++..++.
T Consensus 68 ~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 68 IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKK 119 (196)
T ss_dssp S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T
T ss_pred cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHh
Confidence 222 22222211111100 0114556799999999874 4456667777766
Q ss_pred -CceEEEEecc
Q 004808 302 -RRQTMLFSAT 311 (729)
Q Consensus 302 -~~q~il~SAT 311 (729)
..++|++.=+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 5566665543
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.99 E-value=0.0001 Score=82.23 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 139 ~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
.+...|+..+..-|..|+.++|+..=.|+.||+|+|||.+- ..|+-++... ....|||++|+...+.|+++.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh
Confidence 44556888899999999999999999999999999999763 3444444443 234599999999999999888876
Q ss_pred HhhccCceEEEEe
Q 004808 219 IAQFTDIRCCLVV 231 (729)
Q Consensus 219 l~~~~~i~v~~~~ 231 (729)
++++|+-+.
T Consensus 477 ----tgLKVvRl~ 485 (935)
T KOG1802|consen 477 ----TGLKVVRLC 485 (935)
T ss_pred ----cCceEeeee
Confidence 456665444
No 182
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.94 E-value=1.5e-06 Score=99.47 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=57.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc---CCceEEEEcCccccc
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVDFLIATDVAARG 433 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~---g~~~vLVaTd~~~rG 433 (729)
.+++|+||.+-....+.|..++...+ .+..+.|......|..+++.|+. .++.+|++|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 47899999999999999999999998 89999999999999999999993 357799999988765
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.92 E-value=0.0001 Score=76.66 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEE
Q 004808 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (729)
Q Consensus 130 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~----------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~v 199 (729)
+.|+..+... | .++..|.+++-.+-+ ...+++...||.||.-+..-.|+++++.... +.
T Consensus 26 ~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----r~ 94 (303)
T PF13872_consen 26 LHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----RA 94 (303)
T ss_pred cCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----ce
Confidence 4566655432 2 478889888865532 3568899999999997766666777665432 58
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCcc--C---------
Q 004808 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV--D--------- 268 (729)
Q Consensus 200 LIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~--~--------- 268 (729)
|+|..+-.|-....+.+..+... .+.+..+..-... ....-.-.||++|+..|...-...... .
T Consensus 95 vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g 169 (303)
T PF13872_consen 95 VWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCG 169 (303)
T ss_pred EEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHh
Confidence 99999999988877778776543 3333332221000 001123469999999988764321000 0
Q ss_pred CCCeeEEEEeCcchhhcCCh--------HHHHHHHHHhcCcCceEEEEecccchhHHHH
Q 004808 269 LDDLAVLILDEADRLLELGF--------SAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf--------~~~i~~il~~~~~~~q~il~SATl~~~v~~l 319 (729)
-..=.+||+||||.+-+..- ...+..+.+.+|..+ +++.|||--.+...+
T Consensus 170 ~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~Nm 227 (303)
T PF13872_consen 170 EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRNM 227 (303)
T ss_pred cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCcee
Confidence 01123899999999876532 234556667776555 999999987655443
No 184
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.81 E-value=0.00097 Score=72.75 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=66.8
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHhhcCC------ceeeccCCCCHHHHHHHHHHHh----cCCceEEE--EcCcccccc
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFGLAAL------KAAELHGNLTQAQRLEALELFR----KQHVDFLI--ATDVAARGL 434 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~~~~~------~~~~lhg~~~~~~R~~~l~~F~----~g~~~vLV--aTd~~~rGl 434 (729)
...+++++.|++++--.+.+...-...|+ .-..+-+.-+..+-.-++...+ +|.--||+ +-.-.++|+
T Consensus 527 k~vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgi 606 (755)
T KOG1131|consen 527 KIVPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGI 606 (755)
T ss_pred ccCCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCc
Confidence 33467899999998766655443333332 1122233333333344444443 45555665 456668999
Q ss_pred CCCCcc--EEEEeCCCCChh---------------------hH---------HHHhcccccCCCccEEEEEecc
Q 004808 435 DIIGVQ--TVINYACPRDLT---------------------SY---------VHRVGRTARAGREGYAVTFVTD 476 (729)
Q Consensus 435 Di~~v~--~VI~~d~P~s~~---------------------~y---------iQriGRagR~G~~G~~i~l~~~ 476 (729)
|+.+-. .||+++.|.... +| .|-.||+-| |+.-+.++++.+
T Consensus 607 dF~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr-~K~dYg~mI~aD 679 (755)
T KOG1131|consen 607 DFDHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLR-GKTDYGLMIFAD 679 (755)
T ss_pred ccccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHh-ccccceeeEeee
Confidence 998755 899999997322 11 378899999 667777776664
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.81 E-value=0.00017 Score=72.39 Aligned_cols=152 Identities=21% Similarity=0.243 Sum_probs=95.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~---g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
.|+.+..+..|+--+.. ++ -+++.|.+++..+.. |.+.+...-||.|||.+ ++|++..++..+.. -|-++
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~----Lvrvi 76 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR----LVRVI 76 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----EEEEE
Confidence 35555556666544432 33 479999999988886 57999999999999988 69999888876543 36677
Q ss_pred cCcHHHHHHHHHHHHHHh-hccCceEEEE--ecCCChHHH----H----HHHhcCCCeEEECchHHHHHHhc-------c
Q 004808 203 TPTRELAVQVHSMIEKIA-QFTDIRCCLV--VGGLSTKMQ----E----TALRSMPDIVVATPGRMIDHLRN-------S 264 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~-~~~~i~v~~~--~gg~~~~~~----~----~~l~~~~dIvI~TP~~L~~~l~~-------~ 264 (729)
+|. .|..|..+.+..-. ...+-++..+ ......... . ......-.|+++||+.++.+.-. .
T Consensus 77 Vpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 784 68888888876533 3234333322 222222111 1 11223457999999987554311 1
Q ss_pred Cc----------cCCCCeeEEEEeCcchhhc
Q 004808 265 MS----------VDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 265 ~~----------~~l~~i~~lVvDEah~ll~ 285 (729)
.. -.+.....-|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 0133445578999998764
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.78 E-value=0.00021 Score=82.64 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEE
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~ 228 (729)
.+.|+.++..++.++-+++.|+.|+|||.+ +..++..+..........++++++||--.|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 379999999999999999999999999976 24444444322111113579999999988888777665422111100
Q ss_pred EEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCc-----cCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCc
Q 004808 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (729)
Q Consensus 229 ~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~-----~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~ 303 (729)
. .+.....+-..|-.+|+........ -+.-.+++||||||-.+- ...+..+++.++...
T Consensus 224 -------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 -------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred -------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 0011111224555555443221101 123357899999998653 345566778888888
Q ss_pred eEEEEecc
Q 004808 304 QTMLFSAT 311 (729)
Q Consensus 304 q~il~SAT 311 (729)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 88877543
No 187
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.78 E-value=7.2e-05 Score=74.41 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCc
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i 225 (729)
...++-|..++..++...-+++.||.|||||+..+..+++.+.... --+++|+-|+.+.. +.+. -.+|-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~----~~kiii~Rp~v~~~----~~lG---flpG~ 71 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE----YDKIIITRPPVEAG----EDLG---FLPGD 71 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-----SEEEEEE-S--TT-----------SS---
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC----CcEEEEEecCCCCc----cccc---cCCCC
Confidence 3568899999999998888889999999999988888888776532 23688888876531 1111 00110
Q ss_pred ---eEE-----------EEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHH
Q 004808 226 ---RCC-----------LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (729)
Q Consensus 226 ---~v~-----------~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (729)
+.. .+.+... ...+.....|-+.++..+. +..+. -.+||||||..+. ...
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-------Grt~~-~~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-------GRTFD-NAFIIVDEAQNLT----PEE 135 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-------T--B--SEEEEE-SGGG------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-------Ccccc-ceEEEEecccCCC----HHH
Confidence 000 0001111 1122233456666644332 12232 2699999999874 566
Q ss_pred HHHHHHhcCcCceEEEEecc
Q 004808 292 IHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 292 i~~il~~~~~~~q~il~SAT 311 (729)
+..++..+..+.+++++.-.
T Consensus 136 ~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHcccCCCcEEEEecCc
Confidence 77788888888877776543
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.74 E-value=0.00022 Score=82.63 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEE
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~ 228 (729)
.++|+.++-.++.++-+++.|++|+|||.+ +..++..+..... ....++++++||.-.|..+.+.+.......++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~--- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPL--- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhcccc---
Confidence 589999999999999999999999999976 2344444433211 12357999999999998888776543221111
Q ss_pred EEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCc-----cCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCc
Q 004808 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (729)
Q Consensus 229 ~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~-----~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~ 303 (729)
... +......-..|-.+|+........ -+.-.+++||||||-.+- ...+..++..+|+..
T Consensus 229 ------~~~-----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 229 ------TDE-----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred ------chh-----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 000 001111123444444433221111 123346899999998653 445566778888888
Q ss_pred eEEEEecc
Q 004808 304 QTMLFSAT 311 (729)
Q Consensus 304 q~il~SAT 311 (729)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88887643
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.72 E-value=0.00049 Score=70.48 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH-----------HHH
Q 004808 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA-----------VQV 212 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa-----------~Q~ 212 (729)
++...+..|...+.++..+.-+++.|++|+|||+..+..+++.++... -.+++|.=|+.+.. ..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----VDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----eeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 455678899999999988888889999999999876665665554321 23567776765321 111
Q ss_pred HHHHHHHhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHH
Q 004808 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (729)
Q Consensus 213 ~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (729)
.-++.-+..... .+.|. ......+. ..-.|-|+.... ++. ..|. -.+||||||+.+. ...
T Consensus 132 ~p~~~pi~D~L~----~~~~~---~~~~~~~~~~~~~Iei~~l~y----mRG---rtl~-~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 132 APYFRPVYDVLV----RRLGA---SFMQYCLRPEIGKVEIAPFAY----MRG---RTFE-NAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHH----HHhCh---HHHHHHHHhccCcEEEecHHH----hcC---Cccc-CCEEEEechhcCC----HHH
Confidence 111111111000 00111 11111111 122355555332 222 2232 2689999999874 466
Q ss_pred HHHHHHhcCcCceEEEEe
Q 004808 292 IHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 292 i~~il~~~~~~~q~il~S 309 (729)
+..++..++.+.++|+..
T Consensus 193 ~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHhhcCCCCEEEEeC
Confidence 777788888777766654
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.66 E-value=9.9e-05 Score=82.07 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHhcCCCE-EEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 147 KPTPIQAACIPLALTGRDI-CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dv-lv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
.+.+-|..++..+++.+++ ++.||+|+|||.+... +++.+.... .+|||++||.+.+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~~-----k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQK-----KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHcC-----CeEEEEcCchHHHHHHHHHhc
Confidence 4678899999999998764 5899999999988544 444444433 369999999999888877543
No 191
>PF13245 AAA_19: Part of AAA domain
Probab=97.63 E-value=0.00015 Score=60.38 Aligned_cols=60 Identities=28% Similarity=0.404 Sum_probs=40.7
Q ss_pred HHHHHhcCCC-EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 004808 155 CIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (729)
Q Consensus 155 ~i~~ll~g~d-vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~ 216 (729)
+|...+.+.. +++.||+|||||... +.++..+....... +.++||++||+.++..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL-AARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH-HHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443344444 456999999999763 55555555322222 457999999999999887776
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.62 E-value=0.00015 Score=79.17 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=66.9
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~ 244 (729)
++|.|..|||||++. +.++..+... ..+..++++++...|...+...+..-. . .
T Consensus 4 ~~I~G~aGTGKTvla-~~l~~~l~~~---~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------~ 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLA-LNLAKELQNS---EEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------P 57 (352)
T ss_pred EEEEecCCcCHHHHH-HHHHHHhhcc---ccCCceEEEEecchHHHHHHHHHhhhc----------c------------c
Confidence 679999999999874 5555555111 123468999999999887777776421 0 0
Q ss_pred cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-------hHHHHHHHHHh
Q 004808 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-------FSAEIHELVRL 298 (729)
Q Consensus 245 ~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-------f~~~i~~il~~ 298 (729)
......+.+|..++..+.. .......+++|||||||+|...+ ....+..+++.
T Consensus 58 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0112334455555444331 12346788899999999998721 23555555555
No 193
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.55 E-value=0.00068 Score=79.45 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 146 SKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
..+.+.|..++..++.. ..+++.||+|+|||.+. ..++..+... +.+|||++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-----g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-----GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-----CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999999887 56779999999999763 4444444432 23699999999999998887765
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.48 E-value=0.001 Score=79.11 Aligned_cols=129 Identities=19% Similarity=0.144 Sum_probs=79.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.++ .+++-|.+++..++.++-+++.|+.|+|||.+. -.++..+.... ....+++++||-..|.++.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~---~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG---GLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC---CCceEEEEeCchHHHHHHHHhc------
Confidence 444 689999999999999888999999999999752 33444333221 1135889999988876543321
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc----CccCCCCeeEEEEeCcchhhcCChHHHHHHHHHh
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~----~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~ 298 (729)
+... .|-.+|+...... ..-.....++||||||+.+-. ..+..++..
T Consensus 389 -g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAA 439 (720)
T ss_pred -CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHh
Confidence 2111 1111111110000 000123467999999998743 344566777
Q ss_pred cCcCceEEEEecc
Q 004808 299 CPKRRQTMLFSAT 311 (729)
Q Consensus 299 ~~~~~q~il~SAT 311 (729)
++...++|++.=+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888876543
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.26 E-value=0.0014 Score=69.97 Aligned_cols=124 Identities=23% Similarity=0.218 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceE
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v 227 (729)
+|+-|.++|.. ....++|.|..|||||.+.+--++.. +.... .++.++|+|++|+..|..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~l-l~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYL-LYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHH-HHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHh-hcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc-
Confidence 57889999987 67789999999999999854444443 33332 456679999999999999988888765432110
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCC-CCeeEEEEeCcc
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL-DDLAVLILDEAD 281 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l-~~i~~lVvDEah 281 (729)
................+.|+|-..++..+-....... -.-.+-|+|+..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 -----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred -----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0001112222334467899998887665533211111 112356666666
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.13 E-value=0.00097 Score=61.36 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
++-+++.|++|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456889999999999763
No 197
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.98 E-value=0.0046 Score=58.04 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=41.2
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCCCC--ccEEEEeCCCC
Q 004808 398 AELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG--VQTVINYACPR 449 (729)
Q Consensus 398 ~~lhg~~~~~~R~~~l~~F~~g~~-~vLVaTd~~~rGlDi~~--v~~VI~~d~P~ 449 (729)
..+..+....+...+++.|+.... .||++|..+++|||+|+ ++.||...+|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344555556567889999987643 79999988999999998 67899988874
No 198
>PRK08181 transposase; Validated
Probab=96.97 E-value=0.014 Score=60.97 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=61.4
Q ss_pred HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChH
Q 004808 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (729)
Q Consensus 158 ~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~ 237 (729)
++-.+++++++||+|+|||... ..+...+.... ..| +.++..+|..++......
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~g-----~~v-~f~~~~~L~~~l~~a~~~------------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLA-AAIGLALIENG-----WRV-LFTRTTDLVQKLQVARRE------------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHH-HHHHHHHHHcC-----Cce-eeeeHHHHHHHHHHHHhC-------------------
Confidence 4456889999999999999653 23333333321 124 444555665544221100
Q ss_pred HHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-hHHHHHHHHHhcCcCceEEEEecccchhH
Q 004808 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 238 ~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~~~q~il~SATl~~~v 316 (729)
.+...++.. +...++|||||.+.+.... ....+..+++.......+|+.|-..+.+.
T Consensus 156 --------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 156 --------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred --------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 011122222 2345699999999765322 24566777776554455666665554443
No 199
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0099 Score=65.24 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEE-EEEcCc-HHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV-LILTPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~v-LIl~Pt-reLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~ 240 (729)
+.+++.||||+|||++.. -+..++...... .+.+| ||-+-| |.-+..+ +..++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~a-KLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~----------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIA-KLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA----------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHHHhhhcc-CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-----------
Confidence 467799999999998642 222222211100 11223 333333 4444322 55555545554422
Q ss_pred HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC-ChHHHHHHHHHhcCcC-ceEEEEecccchh-HH
Q 004808 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKR-RQTMLFSATLTED-VD 317 (729)
Q Consensus 241 ~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~il~~~~~~-~q~il~SATl~~~-v~ 317 (729)
+.++..+...+.. +..+++||||++.++... .....+..++..+... .-++++|||.... +.
T Consensus 239 ----------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 ----------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1233444444433 356789999999987532 1334556666655433 4568899998744 44
Q ss_pred HHHHHh
Q 004808 318 ELIKLS 323 (729)
Q Consensus 318 ~l~~~~ 323 (729)
+.+..+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444444
No 200
>PRK06526 transposase; Provisional
Probab=96.91 E-value=0.01 Score=61.59 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCeeEEEEeCcchhhcCC-hHHHHHHHHHhcCcCceEEEEecccchhH
Q 004808 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~~~q~il~SATl~~~v 316 (729)
..+.+|||||+|.+.... -...+..+++.......+|+.|...+...
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 345799999999764222 23345666655443445777777765443
No 201
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.89 E-value=0.0037 Score=64.93 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCceEEEEcCccccccCCCC--------ccEEEEeCCCCChhhHHHHhcccccCCCc-cEEEEEecc---C
Q 004808 410 LEALELFRKQHVDFLIATDVAARGLDIIG--------VQTVINYACPRDLTSYVHRVGRTARAGRE-GYAVTFVTD---N 477 (729)
Q Consensus 410 ~~~l~~F~~g~~~vLVaTd~~~rGlDi~~--------v~~VI~~d~P~s~~~yiQriGRagR~G~~-G~~i~l~~~---~ 477 (729)
....+.|++|+..|+|.+++++.||.+.. -++-|.+.+||+....+|..||++|.|+. .-.|.++.. .
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35678999999999999999999999864 34557889999999999999999999873 444554443 3
Q ss_pred cHHHHHHHHHHh
Q 004808 478 DRSLLKAIAKRA 489 (729)
Q Consensus 478 d~~~l~~i~~~~ 489 (729)
+..+...+.+++
T Consensus 131 E~Rfas~va~rL 142 (278)
T PF13871_consen 131 ERRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHHH
Confidence 566666666553
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.83 E-value=0.0038 Score=61.88 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=57.3
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc---HHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt---reLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~ 240 (729)
=.++.|++|+|||.+. +-++.++... +.+++|+-|. +....+ +....++.+.
T Consensus 4 i~litG~~GsGKTT~~-l~~~~~~~~~-----g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~------------ 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTEL-LQRAYNYEER-----GMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE------------ 58 (190)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHHHc-----CCeEEEEeccccccccCCc-------EecCCCCccc------------
Confidence 3678999999999764 5555555433 2357888663 322111 1111121111
Q ss_pred HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 241 ~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
.+.+..+..++..+.. .-..+.+|||||||.+. ...+.++++.+...-..+++++-
T Consensus 59 -------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0123444555555443 23467899999998642 23355566664444445555554
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.77 E-value=0.02 Score=68.47 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
+++..+...-..++ .+++-|..++..++.+ +-+++.|+.|+|||.+. -.++..+ .. .+.+|++++||--.|.
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~-~~----~g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAW-EA----AGYRVIGAALSGKAAE 410 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHH-Hh----CCCeEEEEeCcHHHHH
Confidence 34443333322333 5899999999999885 45679999999999752 3333333 22 2346999999987765
Q ss_pred HH
Q 004808 211 QV 212 (729)
Q Consensus 211 Q~ 212 (729)
.+
T Consensus 411 ~L 412 (744)
T TIGR02768 411 GL 412 (744)
T ss_pred HH
Confidence 54
No 204
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.74 E-value=0.0063 Score=57.23 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCC---ceeeccCCCCHHHHHHHHHHHhcCCc---eEEEEcCc--cccccCCCC--ccEEEEeCCCC
Q 004808 383 AHRLKILFGLAAL---KAAELHGNLTQAQRLEALELFRKQHV---DFLIATDV--AARGLDIIG--VQTVINYACPR 449 (729)
Q Consensus 383 ~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~l~~F~~g~~---~vLVaTd~--~~rGlDi~~--v~~VI~~d~P~ 449 (729)
.+.+...+...++ ....+.......+...+++.|+.... .||+++.. +++|||+|+ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3444455544332 12233333333355788888987543 68988887 999999998 68899988884
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.68 E-value=0.023 Score=52.46 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=20.9
Q ss_pred HHHHhc--CCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 156 IPLALT--GRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 156 i~~ll~--g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
...+.. ++.+++.|++|+|||.. +..+...+
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 344444 67899999999999964 34444443
No 206
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.67 E-value=0.023 Score=69.23 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=74.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCC-EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 143 LGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~d-vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.|+ .+++-|.+++..++.+++ +++.|..|+|||.+ +-.+...+ .. .+.+|+.++||--.|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~----~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA----AGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH----cCCeEEEecCcHHHHHHHhh-------
Confidence 454 589999999999999766 56999999999986 33333333 22 24469999999876544322
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc-C
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-P 300 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~-~ 300 (729)
..++... |-.+|+...... ...+....+||||||-.+... .+..++... +
T Consensus 409 ~tGi~a~------------------------TI~sll~~~~~~-~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~ 459 (988)
T PRK13889 409 GSGIASR------------------------TIASLEHGWGQG-RDLLTSRDVLVIDEAGMVGTR----QLERVLSHAAD 459 (988)
T ss_pred ccCcchh------------------------hHHHHHhhhccc-ccccccCcEEEEECcccCCHH----HHHHHHHhhhh
Confidence 1222111 111111111111 123556679999999976433 334455433 4
Q ss_pred cCceEEEEecc
Q 004808 301 KRRQTMLFSAT 311 (729)
Q Consensus 301 ~~~q~il~SAT 311 (729)
...++|++.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 45666666544
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.0056 Score=68.18 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=68.6
Q ss_pred EEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HhhccCceEEEEecCCChHHHH----H
Q 004808 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQE----T 241 (729)
Q Consensus 167 v~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~-l~~~~~i~v~~~~gg~~~~~~~----~ 241 (729)
+.+.||||||++..-.||+. +..+-+ ..|+.|...........-+.. ++...-+.-.+.+++....... .
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr----~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYR----NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchh----hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 46789999999754444433 332211 367777765554333222111 1000000001112221111000 0
Q ss_pred HHhcCCCeEEECchHHHHHHhccC--ccC---CCCee-EEEEeCcchhhcCC-------------hHHHHHHHHHhcCcC
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSM--SVD---LDDLA-VLILDEADRLLELG-------------FSAEIHELVRLCPKR 302 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~--~~~---l~~i~-~lVvDEah~ll~~g-------------f~~~i~~il~~~~~~ 302 (729)
.......|+++|...|...+.+.. .+. |.+.. +++-||||++-... +...+...++ ..+.
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd 155 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKD 155 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCC
Confidence 023346799999999877665421 233 33333 56779999985311 1221111111 2334
Q ss_pred ceEEEEecccch
Q 004808 303 RQTMLFSATLTE 314 (729)
Q Consensus 303 ~q~il~SATl~~ 314 (729)
.-++.||||.+.
T Consensus 156 ~~~lef~at~~k 167 (812)
T COG3421 156 NLLLEFSATIPK 167 (812)
T ss_pred ceeehhhhcCCc
Confidence 457889999983
No 208
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.56 E-value=0.0072 Score=62.02 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred CCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecC-CChHHHHHHHhc-CCCeEEECchHHHHHHhccCccCC
Q 004808 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG-LSTKMQETALRS-MPDIVVATPGRMIDHLRNSMSVDL 269 (729)
Q Consensus 192 ~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg-~~~~~~~~~l~~-~~dIvI~TP~~L~~~l~~~~~~~l 269 (729)
.....|.+|||+..-.=|..+.+.+..|. ..+..|+-++.- .....+...+.. ..+|.|+||+||..++.++ .+.+
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l 199 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSL 199 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCc
Confidence 33456789999987555555555555432 112444444443 366777777764 6899999999999999775 7889
Q ss_pred CCeeEEEEeCcch
Q 004808 270 DDLAVLILDEADR 282 (729)
Q Consensus 270 ~~i~~lVvDEah~ 282 (729)
+++.+||||=-|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 9999999998765
No 209
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.012 Score=64.01 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
|..+++.||||+|||+....-+...+...+. .+|.+++ +-..-.--.+.+..|+...++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------------ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA----SKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------------ 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----CeEEEEe-cccccccHHHHHHHHHHHcCCceEe------------
Confidence 5678899999999998743222222222111 1344433 2222111234455555444544332
Q ss_pred HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-hHHHHHHHHHhcCcCceEEEEecccchhH-HHH
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV-DEL 319 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~~~q~il~SATl~~~v-~~l 319 (729)
+.+++.|...+.. +.+.++|+||.+-+..... ....+..+.........++++|||..... .+.
T Consensus 200 ---------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ---------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 3334344333332 3445789999997653221 22233333222233345788899986554 344
Q ss_pred HHHh
Q 004808 320 IKLS 323 (729)
Q Consensus 320 ~~~~ 323 (729)
++.+
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4444
No 210
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.48 E-value=0.041 Score=67.59 Aligned_cols=138 Identities=18% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
++++..+......++ .+++-|..++..+..+ +-+++.|+.|+|||.+ +-++...+.. .+.+|+.++||--.|
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-----~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-----AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEEcCcHHHH
Confidence 455555555444444 5999999999988654 4566999999999986 2344443322 244699999997776
Q ss_pred HHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChH
Q 004808 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (729)
Q Consensus 210 ~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (729)
..+.+ ..++....+. +++-..... ...+..-.+||||||..+. .
T Consensus 439 ~~L~e-------~~Gi~a~TIa------------------------s~ll~~~~~-~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 439 EGLEK-------EAGIQSRTLS------------------------SWELRWNQG-RDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHH-------hhCCCeeeHH------------------------HHHhhhccC-ccCCCCCcEEEEECcccCC----H
Confidence 54422 2233332221 111000011 1235566799999999764 3
Q ss_pred HHHHHHHHhcC-cCceEEEEecc
Q 004808 290 AEIHELVRLCP-KRRQTMLFSAT 311 (729)
Q Consensus 290 ~~i~~il~~~~-~~~q~il~SAT 311 (729)
..+..++..++ ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 33444555554 45667766544
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=96.48 E-value=0.029 Score=60.46 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=40.0
Q ss_pred CeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhc
Q 004808 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324 (729)
Q Consensus 271 ~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l 324 (729)
.+++||||.|.++. +..+...+..+.+.+.+..-+++++||...+....+..+.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 45699999999886 3446677777777777777788999998877666555543
No 212
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.45 E-value=0.0055 Score=73.61 Aligned_cols=154 Identities=21% Similarity=0.152 Sum_probs=93.1
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhc-----------CCC-CCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEE
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLY-----------RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~-----------~~~-~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~ 229 (729)
|+++++...+|+|||..-+.-.+..+-. ... ....+.+|||+|. ++..||++.+...+.. ++++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 6788999999999998754444333110 000 1123348999997 5668999999876543 467777
Q ss_pred EecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCcc-------------C----CC--CeeEEEEeCcchhhcCChHH
Q 004808 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-------------D----LD--DLAVLILDEADRLLELGFSA 290 (729)
Q Consensus 230 ~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~-------------~----l~--~i~~lVvDEah~ll~~gf~~ 290 (729)
+.|-.........-.-.+|||+|||..|...+...... . |- .|=-|+||||..+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 66643221111112234899999999998887643111 0 11 122579999997654 234
Q ss_pred HHHHHHHhcCcCceEEEEecccchhHHHHH
Q 004808 291 EIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (729)
Q Consensus 291 ~i~~il~~~~~~~q~il~SATl~~~v~~l~ 320 (729)
...+++..+|. ...-.+|+|+-..+.++.
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhhhhhhH
Confidence 44445555543 345788999765555553
No 213
>PRK06921 hypothetical protein; Provisional
Probab=96.45 E-value=0.028 Score=58.80 Aligned_cols=45 Identities=24% Similarity=0.218 Sum_probs=27.1
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q 211 (729)
.+..+++.|++|+|||... ..+...+.... +..|++ ++..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~----g~~v~y-~~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKK----GVPVLY-FPFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhc----CceEEE-EEHHHHHHH
Confidence 3577999999999999753 44455554321 223555 444455443
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.40 E-value=0.041 Score=61.46 Aligned_cols=128 Identities=23% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHh-cCCCCCCCcEEEEE-cC-cHHHHHHHHHHHHHHhhccCceEEEEecCCChHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLIL-TP-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~-~~~~~~~~~~vLIl-~P-treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~ 238 (729)
++.+++.||||+|||.+.. -+...+. ... +.+|.+| +- .|.-+ .+.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~-kLA~~~~~~~~----g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA-KLAARYALLYG----KKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHHhcC----CCeEEEEECCccHHHH---HHHHHHHHHHhCCceE----------
Confidence 4567899999999997643 2222222 111 1134433 32 23322 2334444443444332
Q ss_pred HHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHh-cCcCceEEEEecccchh-
Q 004808 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRL-CPKRRQTMLFSATLTED- 315 (729)
Q Consensus 239 ~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~-~~~~~q~il~SATl~~~- 315 (729)
++.++..|...+.. +..+++||||-+-+.. +......+..++.. ..+..-.+++|||....
T Consensus 283 -----------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred -----------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 22344444444443 2356799999987643 22234455556552 22334578899988754
Q ss_pred HHHHHHHh
Q 004808 316 VDELIKLS 323 (729)
Q Consensus 316 v~~l~~~~ 323 (729)
+...+..+
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 44444443
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.29 E-value=0.0081 Score=54.90 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=25.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
+..+++.||+|+|||... ..++..+. ... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~-~~~----~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELG-PPG----GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccC-CCC----CCEEEECCEEcc
Confidence 467889999999999863 22333221 111 236777776644
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.045 Score=59.58 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE-c-CcHH-HHHHHHHHHHHHhhccCceEEEEecCCChHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-T-PTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl-~-Ptre-La~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~ 239 (729)
+.+++.||||+|||.....-+ ..+... +.+++++ + |.|. .+.|+ ..++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~~-----GkkVglI~aDt~RiaAvEQL----k~yae~lgipv~----------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHGK-----KKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVI----------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHHc-----CCcEEEEecCCcchHHHHHH----HHHhhhcCCcEE-----------
Confidence 467799999999998643222 233222 1234443 3 3342 22333 333332333322
Q ss_pred HHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC-ChHHHHHHHHHhcCcCceEEEEecccch-hHH
Q 004808 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE-DVD 317 (729)
Q Consensus 240 ~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~il~~~~~~~q~il~SATl~~-~v~ 317 (729)
++.+|..|.+.+.... ....+++|+||-+-+.... .....+..++....+..-++.+|||... ++.
T Consensus 301 ----------v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 301 ----------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ----------ecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 2335666665554311 0124678999988775532 2344555555544444446778987654 556
Q ss_pred HHHHHh
Q 004808 318 ELIKLS 323 (729)
Q Consensus 318 ~l~~~~ 323 (729)
..+..+
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 555554
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.035 Score=55.25 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=68.6
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc--CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~--PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+++.||||+|||.+. .-+..++..... +|.+++ ..|.=| .++++.++...++.+....-..+....
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~~~-----~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~--- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLKGK-----KVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEI--- 71 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHTT-------EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHH---
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhccc-----cceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHH---
Confidence 568999999999863 333333333321 233333 334333 344666666567665543322211110
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
+...+.. +...++++|+||=+.+.. +......+..++....+..-.+.+|||...+....+.
T Consensus 72 --------------~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 --------------AREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp --------------HHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred --------------HHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1112221 112345678888877644 2234566677777776666788999999876554443
Q ss_pred H
Q 004808 322 L 322 (729)
Q Consensus 322 ~ 322 (729)
.
T Consensus 135 ~ 135 (196)
T PF00448_consen 135 A 135 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 218
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.15 E-value=0.018 Score=67.64 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=78.1
Q ss_pred CCCCcHHHHHHHHHHhcCCC-EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 145 YSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~d-vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
+..+..-|++|+-.++..+| .+|.|-+|+|||.+. ..++..|+... .+||+.+=|...+..+ +.+|.. .
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~~g-----kkVLLtsyThsAVDNI---LiKL~~-~ 736 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVALG-----KKVLLTSYTHSAVDNI---LIKLKG-F 736 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHHcC-----CeEEEEehhhHHHHHH---HHHHhc-c
Confidence 34678899999999888776 568999999999763 34444444443 3589998887765544 555433 2
Q ss_pred CceEEEEecCCC--hH---------------HHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 224 DIRCCLVVGGLS--TK---------------MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 224 ~i~v~~~~gg~~--~~---------------~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
++.+.-+-.... .. .....+...+.||.+|-..+-+. .|....++++|||||-.++
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p-----lf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP-----LFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-----hhhccccCEEEEccccccc
Confidence 333221111111 11 11112345578999996555433 3445678899999999875
No 219
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.13 E-value=0.092 Score=57.14 Aligned_cols=134 Identities=24% Similarity=0.282 Sum_probs=74.8
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~ 240 (729)
.++-+.+.||||-|||++. +=|.+.+....+ ...-.||.+-|-=.. .+++++.++.-.++.+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTl--AKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~v----------- 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTL--AKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEV----------- 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHH--HHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEE-----------
Confidence 3677889999999999862 222222221111 111245555543222 245566666666665544
Q ss_pred HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccc-hhHHH
Q 004808 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLT-EDVDE 318 (729)
Q Consensus 241 ~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~-~~v~~ 318 (729)
+-||.-|...+.. +.+.++|.||=+-+-. +......+..++...+..--.+.+|||.. .++.+
T Consensus 266 ----------v~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 266 ----------VYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ----------ecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 4455555554443 3455677777766522 32345566666666655555688898875 44555
Q ss_pred HHHHhcC
Q 004808 319 LIKLSLT 325 (729)
Q Consensus 319 l~~~~l~ 325 (729)
.+..+-.
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 5555543
No 220
>PHA02533 17 large terminase protein; Provisional
Probab=96.06 E-value=0.04 Score=63.21 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=84.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC--
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-- 224 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~-- 224 (729)
.|.|+|...+..+..++-.++..+=..|||.+.+..++...+..+ +..+++++|++..|..+++.+..+....+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~----~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK----DKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 478999999988766676678888899999876654544444332 34799999999999988887776544321
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCc--C
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--R 302 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~--~ 302 (729)
....+.... .....+.+++.|.+.|-. .....-.++.++|+||+|.+.+ +...+..+...+.. .
T Consensus 135 ~~~~i~~~~----~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEWN----KGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeecC----ccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 111110000 011112345555444421 1112223456899999997654 22333333333332 2
Q ss_pred ceEEEEeccc
Q 004808 303 RQTMLFSATL 312 (729)
Q Consensus 303 ~q~il~SATl 312 (729)
.+++++|.+.
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 3466666554
No 221
>PRK08727 hypothetical protein; Validated
Probab=95.94 E-value=0.035 Score=56.94 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=24.9
Q ss_pred CeeEEEEeCcchhhcCC-hHHHHHHHHHhcCcCceEEEEecccc
Q 004808 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
++.+|||||+|.+..+. ....+..+++.+......+++|+..+
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~ 136 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQM 136 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 34589999999887432 34455556655433332355555443
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.81 E-value=0.13 Score=52.95 Aligned_cols=109 Identities=18% Similarity=0.305 Sum_probs=58.6
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
..++++|++|+|||... ..+.+.+.... ..|+++ +..+|...+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~g-----~~v~~i-t~~~l~~~l~~~~~~-------------~---------- 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLRG-----KSVLII-TVADIMSAMKDTFSN-------------S---------- 149 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhcC-----CeEEEE-EHHHHHHHHHHHHhh-------------c----------
Confidence 46899999999999763 44555554432 235444 444443332221100 0
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHH-HHHHHHHhcCc-CceEEEEecccchhHH
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLCPK-RRQTMLFSATLTEDVD 317 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~-~i~~il~~~~~-~~q~il~SATl~~~v~ 317 (729)
-.+...++.. +..+++|||||++......+.. .+..|++.... ...+++.|---+.++.
T Consensus 150 --------~~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 150 --------ETSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred --------cccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0122233332 3356799999999876444443 44556665432 4556666655444443
No 223
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.76 E-value=0.043 Score=58.31 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=47.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCC-C-EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 141 EALGYSKPTPIQAACIPLALTGR-D-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~g~-d-vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
..+|+......|.-++.+++.-. + |.+.|+.|||||+.++.+.++..+.+.. .-++||.=|+..+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---y~KiiVtRp~vpv 288 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---YRKIIVTRPTVPV 288 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---hceEEEecCCcCc
Confidence 34688777778888888888753 3 4489999999999888777877765432 2257777777644
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=95.76 E-value=0.039 Score=56.43 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCeeEEEEeCcchhhc-CChHHHHHHHHHhcCc-CceEEEEecccchhH
Q 004808 270 DDLAVLILDEADRLLE-LGFSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~-~gf~~~i~~il~~~~~-~~q~il~SATl~~~v 316 (729)
.+.++|||||+|.+.. ..+...+..+++.+.. ..+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 3456999999998863 3345566666666544 345678888775543
No 225
>PRK08116 hypothetical protein; Validated
Probab=95.73 E-value=0.19 Score=52.59 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
..+++.|++|+|||... ..+.+.+.... ..+ +.++..+|...+...+.. ...
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~~-----~~v-~~~~~~~ll~~i~~~~~~--------------~~~------- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEKG-----VPV-IFVNFPQLLNRIKSTYKS--------------SGK------- 166 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHcC-----CeE-EEEEHHHHHHHHHHHHhc--------------ccc-------
Confidence 34899999999999763 45666665432 124 444555565443332211 000
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch--hhcCChHHHHHHHHHhcC-cCceEEEEecccchhHH
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR--LLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~--ll~~gf~~~i~~il~~~~-~~~q~il~SATl~~~v~ 317 (729)
.+...++.. +.+.++||||+.+. ..+| ....+..|++... ...++|+.|-..+.++.
T Consensus 167 ---------~~~~~~~~~--------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 ---------EDENEIIRS--------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred ---------ccHHHHHHH--------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 011122222 23456899999964 3333 2455666766543 33456666655555543
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.71 E-value=0.088 Score=56.73 Aligned_cols=44 Identities=25% Similarity=0.172 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
+.++++.|+||+|||... ..+...++... ..|+ .++...|..++
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~~g-----~~V~-y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLDRG-----KSVI-YRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHHCC-----CeEE-EEEHHHHHHHH
Confidence 578999999999999753 44455554332 2344 45555664444
No 227
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.71 E-value=0.062 Score=62.91 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=86.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCC--CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 141 EALGYSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~g~--dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
..+..+.+..-|.+.+..++..+ -+++.|.-|=|||.+.-|.+........ ..+++|++|+.+-+..+++.+.+
T Consensus 208 ~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~----~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 208 YELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG----SVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred hhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC----CceEEEeCCCHHHHHHHHHHHHH
Confidence 33334444455555666666653 4679999999999887666533222111 45799999999998888887776
Q ss_pred HhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHH
Q 004808 219 IAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (729)
Q Consensus 219 l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~ 297 (729)
-..+.|.+-.+........ .... ....|=+.+|.... ..-++||||||=.+ ..+.+..++.
T Consensus 284 ~l~~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~~ 345 (758)
T COG1444 284 GLEFLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLLR 345 (758)
T ss_pred hHHHhCCccccccccccce---eeecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHHh
Confidence 6555554322222111100 0000 11234455554432 11458999999876 3555555555
Q ss_pred hcCcCceEEEEecccc
Q 004808 298 LCPKRRQTMLFSATLT 313 (729)
Q Consensus 298 ~~~~~~q~il~SATl~ 313 (729)
.. +.++||.|+.
T Consensus 346 ~~----~rv~~sTTIh 357 (758)
T COG1444 346 RF----PRVLFSTTIH 357 (758)
T ss_pred hc----CceEEEeeec
Confidence 44 4589999986
No 228
>PRK05642 DNA replication initiation factor; Validated
Probab=95.70 E-value=0.047 Score=56.01 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=30.4
Q ss_pred CeeEEEEeCcchhhc-CChHHHHHHHHHhcCcCceEEEEecccch
Q 004808 271 DLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (729)
Q Consensus 271 ~i~~lVvDEah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~ 314 (729)
.+++||||++|.+.. ..+...+..+++.+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345899999998753 33466788888877655455677776554
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.65 E-value=0.15 Score=48.18 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=26.1
Q ss_pred CCeeEEEEeCcchhhcCC----------hHHHHHHHHHhcCcCceEEEEecccc
Q 004808 270 DDLAVLILDEADRLLELG----------FSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~g----------f~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
....++||||.+.+.... ....+..+........-+++++...+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 466799999999876432 23444555555544444555555544
No 230
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.65 E-value=0.039 Score=62.89 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhc-----C----CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 150 PIQAACIPLALT-----G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 150 ~iQ~~~i~~ll~-----g----~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
|+|.-++-.++. | +.+++.-+=|.|||......++..++..+ ..+..++++++++.-|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g--~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG--EPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC--ccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 678877777763 2 45888889999999765555555554432 245689999999999999999988876
Q ss_pred hccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhc-cCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHh
Q 004808 221 QFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (729)
Q Consensus 221 ~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~-~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~ 298 (729)
......... ... .... ....|.+...+.++..+.. .....-.+..++|+||+|.+-+......+..-+..
T Consensus 79 ~~~~~l~~~-~~~-------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 79 EASPELRKR-KKP-------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HhChhhccc-hhh-------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 542211100 000 0000 1123333332333332322 12233335679999999998764444444333333
Q ss_pred cCcCceEEEEe
Q 004808 299 CPKRRQTMLFS 309 (729)
Q Consensus 299 ~~~~~q~il~S 309 (729)
. ++.+++++|
T Consensus 151 r-~~pl~~~IS 160 (477)
T PF03354_consen 151 R-PNPLIIIIS 160 (477)
T ss_pred C-CCceEEEEe
Confidence 2 345555554
No 231
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.64 E-value=0.02 Score=67.99 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+++-|.+++.. ....++|.|..|||||.+. +.-+.+++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL-~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 378899999864 3567889999999999874 44444444321 24556799999999999999888877643
No 232
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.63 E-value=0.038 Score=65.40 Aligned_cols=72 Identities=25% Similarity=0.236 Sum_probs=52.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
--..+++-|.+++-. ...+++|.|..|||||.+. +.-+..++... ...+.++|+|+.|+..|..+.+.+...
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl-~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL-VARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH-HHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 335699999999853 3456889999999999874 44444444332 234557999999999999888887754
No 233
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.59 E-value=0.56 Score=53.78 Aligned_cols=111 Identities=13% Similarity=0.175 Sum_probs=71.7
Q ss_pred HHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCc-------eeeccCCCCHHHHHHHHHHHh----cCCceEEEEc--C
Q 004808 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-------AAELHGNLTQAQRLEALELFR----KQHVDFLIAT--D 428 (729)
Q Consensus 362 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~-------~~~lhg~~~~~~R~~~l~~F~----~g~~~vLVaT--d 428 (729)
..++.. .+++|++|+||+.-...+.......|+- .+.+-..-+ -..+++.|. .|.-.+|+|. .
T Consensus 622 ~nL~~~-VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGG 697 (821)
T KOG1133|consen 622 SNLSNA-VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGG 697 (821)
T ss_pred HHHHhh-CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 344444 4589999999999999998888766542 111212222 344555554 4555566664 5
Q ss_pred ccccccCCCC--ccEEEEeCCCCC-h-----------------------h--------hHHHHhcccccCCCccEEEEEe
Q 004808 429 VAARGLDIIG--VQTVINYACPRD-L-----------------------T--------SYVHRVGRTARAGREGYAVTFV 474 (729)
Q Consensus 429 ~~~rGlDi~~--v~~VI~~d~P~s-~-----------------------~--------~yiQriGRagR~G~~G~~i~l~ 474 (729)
-+++|||+.+ ++.||..++|.. + + ..-|.||||-|.-+.--+|.++
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 6789999976 889999998862 0 1 1238889998865555555555
Q ss_pred cc
Q 004808 475 TD 476 (729)
Q Consensus 475 ~~ 476 (729)
+.
T Consensus 778 D~ 779 (821)
T KOG1133|consen 778 DK 779 (821)
T ss_pred hh
Confidence 53
No 234
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.57 E-value=0.049 Score=59.81 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHH------hcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 148 PTPIQAACIPLA------LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 148 pt~iQ~~~i~~l------l~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
+++-|+.++..+ ..+..+.+.|+-|+|||.. +-.+...+.. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc----ccceEEEecchHHHHHhc
Confidence 567788888887 5678899999999999975 4444444433 234699999998777655
No 235
>PRK12377 putative replication protein; Provisional
Probab=95.53 E-value=0.094 Score=54.12 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=56.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
..++++.|++|+|||... ..+.+.+..... .| +.++..+|..++...+.. +.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~g~-----~v-~~i~~~~l~~~l~~~~~~--------------~~------- 152 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAKGR-----SV-IVVTVPDVMSRLHESYDN--------------GQ------- 152 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHcCC-----Ce-EEEEHHHHHHHHHHHHhc--------------cc-------
Confidence 357899999999999753 445555543221 23 445556675554333210 00
Q ss_pred HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-hHHHHHHHHHhcCc-CceEEEEeccc
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATL 312 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~-~~q~il~SATl 312 (729)
+...++.. +...++|||||.+...... -...+..|++.... ...+++.|---
T Consensus 153 -----------~~~~~l~~--------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 153 -----------SGEKFLQE--------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred -----------hHHHHHHH--------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 00112222 3466799999996543222 24455666665443 35566665443
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.53 E-value=0.063 Score=54.42 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=24.5
Q ss_pred eEEEEeCcchhhcC-ChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 273 AVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 273 ~~lVvDEah~ll~~-gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
.+|||||+|.+... .+...+..+++........+++|++.+
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 48999999987643 235556666554432223456666644
No 237
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.52 E-value=0.047 Score=56.74 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=31.6
Q ss_pred cCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 267 ~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
.....+.++|+||||.|.... ...+...+...+....+++.+..++
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 446677899999999986432 3344555566666777788777654
No 238
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.46 E-value=0.0075 Score=58.61 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=54.1
Q ss_pred EEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhc
Q 004808 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245 (729)
Q Consensus 166 lv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~ 245 (729)
|+.|+-|-|||.+..+.+...+... ..+++|.+|+.+-+..+++.+..-....+++....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-----~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-----KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-----CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccc
Confidence 5789999999987555543332211 14699999999988877776654333223222000000 000001112
Q ss_pred CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 246 ~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
...|-+..|..+...- ...++||||||=.+- ...+..++.. ...++||.|+.
T Consensus 73 ~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--------PQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred cceEEEECCHHHHhCc--------CCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 4567788887764432 133689999998763 3444444332 23578888875
No 239
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.44 E-value=0.081 Score=57.60 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...+.+|||||||.|.... .+.+..+++..|...-+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 4578899999999986433 345666666655555555555
No 240
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.41 E-value=0.054 Score=64.51 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceE
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v 227 (729)
++|-|.+++.. ...+++|.|..|||||.+. +.-+.+++... +..+.++|+|+.|+..|.++.+.+..+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L-~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~---- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVI-TNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTLGKG---- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhCcc----
Confidence 67889998864 3568999999999999874 44444444321 2345679999999999999988887654210
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHh
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~ 262 (729)
....|.|.|..+|+..+-
T Consensus 74 -----------------~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLDII 91 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHHHH
Confidence 013567788777765543
No 241
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.14 Score=61.66 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...++++||||||.|.... .+.+..+++..+...-+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999987543 445566666666655555544
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.085 Score=54.78 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=34.2
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
.+.++++.|++|+|||..+ ..+.+.+... +. -++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~-----g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKA-----GI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHc-----CC-eEEEEEHHHHHHHHHHHHh
Confidence 6789999999999999864 4555555522 12 3555777888776655443
No 243
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.29 E-value=0.81 Score=60.56 Aligned_cols=135 Identities=18% Similarity=0.234 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
.+++-|..++..++.. +-+++.|+.|+|||.+ +-.++.. +.. .+.+|++++||.-.+.++.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~-~~~----~G~~V~~lAPTgrAA~~L~e~~g~~----- 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHL-ASE----QGYEIQIITAGSLSAQELRQKIPRL----- 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHH-HHh----cCCeEEEEeCCHHHHHHHHHHhcch-----
Confidence 5889999999999886 4566999999999976 2333333 322 2347999999998776655442211
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc-CcCc
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRR 303 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~-~~~~ 303 (729)
...++ .....+.. .....|...|+ .. ...+..-++||||||-.+. ...+..++... +...
T Consensus 498 --A~Ti~------~~l~~l~~--~~~~~tv~~fl---~~--~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 498 --ASTFI------TWVKNLFN--DDQDHTVQGLL---DK--SSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNS 558 (1960)
T ss_pred --hhhHH------HHHHhhcc--cccchhHHHhh---cc--cCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCC
Confidence 00000 00000000 11122222332 11 2335567899999999764 33455555544 4567
Q ss_pred eEEEEecc
Q 004808 304 QTMLFSAT 311 (729)
Q Consensus 304 q~il~SAT 311 (729)
++|++.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877654
No 244
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.27 E-value=0.083 Score=54.21 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=26.3
Q ss_pred eeEEEEeCcchhhc-CChHHHHHHHHHhcCcC-ceEEEEecccch
Q 004808 272 LAVLILDEADRLLE-LGFSAEIHELVRLCPKR-RQTMLFSATLTE 314 (729)
Q Consensus 272 i~~lVvDEah~ll~-~gf~~~i~~il~~~~~~-~q~il~SATl~~ 314 (729)
+.+|||||+|.+.. ..+...+..+++.+... ...+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 35899999999863 33556666676665432 223555655443
No 245
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.16 E-value=0.1 Score=59.03 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=56.4
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+.+++.|++|+|||... ..+.+.+.... ++.+++++ +...+..++...+.. +
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~---~~~~v~yi-~~~~~~~~~~~~~~~-----~------------------ 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN---PNAKVVYV-TSEKFTNDFVNALRN-----N------------------ 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC---CCCeEEEE-EHHHHHHHHHHHHHc-----C------------------
Confidence 45889999999999753 34444444321 23345555 545554443333221 0
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC-hHHHHHHHHHhcCc-CceEEEEecccchhH
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~-~~q~il~SATl~~~v 316 (729)
+...+...+ ..+++|||||+|.+.... ....+..+++.+.. ..++++.|.+.+..+
T Consensus 201 ----------~~~~~~~~~--------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 201 ----------TMEEFKEKY--------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred ----------cHHHHHHHH--------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 011222222 245589999999876432 23455555554433 345544444444343
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.15 E-value=0.12 Score=58.23 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+.+++.|++|+|||... ..+.+.+.... ++.+|+++.+ .++...+...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~~---------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKTH---------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHhh----------------------
Confidence 45889999999999642 33344333221 2335665444 566555544443200
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC-ChHHHHHHHHHhcCcCceEEEEecccch
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 314 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~il~~~~~~~q~il~SATl~~ 314 (729)
.+...+... +...++|||||+|.+... .....+..+++.+......+++|+..++
T Consensus 195 ---------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 000111111 235669999999987632 2455666666665443333445544444
No 247
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.14 E-value=0.035 Score=66.60 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
..++|-|.+++.. ....++|.|..|||||.+. ..-+.+|+... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL-THRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999864 3468999999999999874 44444444332 24566899999999999999998887754
No 248
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.096 Score=60.59 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEec
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SA 310 (729)
...++++||||+|.|....+ +.+...++.-+....+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 45688999999999875444 344445555555555555543
No 249
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.16 Score=54.34 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCCCcHHHHHHHHHHhc----CC---CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 145 YSKPTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~----g~---dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
+..++|+|..++..+.. |+ -+|+.||.|+||+..+ ..+...++..... ... -|+. | ..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~-~~~----~c~~---c----~~~~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPD-PAA----AQRT---R----QLIA 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCC-CCC----cchH---H----HHHh
Confidence 35688999888877664 33 4889999999999753 4455555553221 100 1111 1 1111
Q ss_pred HHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHH
Q 004808 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (729)
Q Consensus 218 ~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~ 297 (729)
. ..++++.+.......... .....|.|-.--.+...+... -.....+++|||+||.|... -.+.+..+++
T Consensus 69 ~-g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~--p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 69 A-GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT--PQYGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred c-CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC--cccCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 1 123444333111100000 000112222222233333221 22357889999999998643 3555666777
Q ss_pred hcCcCceEEEEeccc
Q 004808 298 LCPKRRQTMLFSATL 312 (729)
Q Consensus 298 ~~~~~~q~il~SATl 312 (729)
.-|....+|+.|..+
T Consensus 139 EPp~~~~fiL~~~~~ 153 (319)
T PRK08769 139 EPSPGRYLWLISAQP 153 (319)
T ss_pred CCCCCCeEEEEECCh
Confidence 766666666666543
No 250
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.90 E-value=0.14 Score=57.09 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=25.4
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
..+++.|++|+|||... ..+.+.+.... ++..++++ +...+..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~---~~~~v~yi-~~~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN---PNAKVVYV-SSEKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC---CCCcEEEE-EHHHHHH
Confidence 45789999999999753 44445544331 12346665 3344433
No 251
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.89 E-value=0.09 Score=66.71 Aligned_cols=124 Identities=24% Similarity=0.220 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceE
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v 227 (729)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ....++|||+=|+..|..+.+.+....... +.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~- 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEALQKA-LQ- 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-Hh-
Confidence 6889999997 4688999999999999998666666655433 233469999999999988877776543210 00
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCC-CeeEEEEeCcch
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD-DLAVLILDEADR 282 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~-~i~~lVvDEah~ 282 (729)
...........+..-...-|+|-..++..+-+.....+. +-.+=|+||...
T Consensus 75 ----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 ----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000111112223334567899999988776543222111 123456888875
No 252
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.87 E-value=0.056 Score=53.12 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=78.8
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~ 240 (729)
....+++..++|.|||.+.+--++..+- .+.+|+|+.=.+--. -+.....+....++.+.. .|......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~~~- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFTWE- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCccc-
Confidence 4568889999999999886555555442 233577765332110 011122222222333322 22110000
Q ss_pred HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChH--HHHHHHHHhcCcCceEEEEecccchhHHH
Q 004808 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (729)
Q Consensus 241 ~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~--~~i~~il~~~~~~~q~il~SATl~~~v~~ 318 (729)
....+.-+......+..... .+.-..+++|||||+-..+++|+. ..+..++...|...-+|+..-.+|+++.+
T Consensus 90 ---~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 90 ---TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ---CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00000000011112222221 222457889999999999998864 66778888888877777777788888877
Q ss_pred HHHH
Q 004808 319 LIKL 322 (729)
Q Consensus 319 l~~~ 322 (729)
.+.+
T Consensus 165 ~ADl 168 (191)
T PRK05986 165 AADL 168 (191)
T ss_pred hCch
Confidence 6644
No 253
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.3 Score=53.50 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=23.5
Q ss_pred HHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 156 IPLALTG--RDICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 156 i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
.|++..+ .++++.|+||+|||++ +-.++..+...
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 3444443 4699999999999987 45666666544
No 254
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.84 E-value=0.054 Score=65.03 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.++|-|.+++.. ....++|.|..|||||.+. +.-+.+|+... +.++.++|+|+-|+..|..+.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL-VHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 589999999864 3457999999999999874 44444444322 24566799999999999999998887654
No 255
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.82 E-value=0.26 Score=55.12 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=33.0
Q ss_pred eEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHH
Q 004808 273 AVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (729)
Q Consensus 273 ~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~ 322 (729)
++||||.+-++. +.....++..+...+.+..-++.++||...+....+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 689999996654 22344556666666666666788888887655555444
No 256
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.26 Score=56.38 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
..++++||||||.|....| +.+...+...|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875443 44555666666665555544
No 257
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.24 Score=58.20 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
..++++||||+|.|....| +.+..+++.-+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999875443 33444555555544444443
No 258
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.75 E-value=0.065 Score=55.64 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
+....+|++|++++-+...+.. ...=|||.||||||||.+ +..++.++...
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3445667777777665542211 112367999999999987 46677776544
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.47 Score=53.88 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=60.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE-c-CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-T-PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl-~-PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~ 239 (729)
|+.+++.|+||+|||......+. .+..... +.+|.++ + +.|..+. +++..++...++.+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa-~la~~~~---gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------- 412 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ-RFAAQHA---PRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------- 412 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH-HHHHhcC---CCceEEEecccccccHH---HHHHHhhcccCceeEe----------
Confidence 56677999999999976422222 2221110 1124433 2 2343332 2233333323332221
Q ss_pred HHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC-ChHHHHHHHHHhcCcCceEEEEecccc-hhHH
Q 004808 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT-EDVD 317 (729)
Q Consensus 240 ~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~il~~~~~~~q~il~SATl~-~~v~ 317 (729)
+.++..|...+.. +.++++||||.+-+.... .....+..+... ....-+++++++.. .++.
T Consensus 413 -----------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 -----------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHH
Confidence 1233445444443 245678999998765321 112223223222 23345778888865 3444
Q ss_pred HHHHHh
Q 004808 318 ELIKLS 323 (729)
Q Consensus 318 ~l~~~~ 323 (729)
..+..+
T Consensus 476 eii~~f 481 (559)
T PRK12727 476 EVVRRF 481 (559)
T ss_pred HHHHHH
Confidence 444433
No 260
>PTZ00293 thymidine kinase; Provisional
Probab=94.66 E-value=0.14 Score=51.14 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|+=.++.||++||||.- +|-.+.+...... +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag~-----kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSEK-----KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcCC-----ceEEEEecc
Confidence 34457899999999975 4555555444332 488888864
No 261
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.64 E-value=0.15 Score=54.65 Aligned_cols=66 Identities=30% Similarity=0.350 Sum_probs=43.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 137 LRACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 137 ~~~l~~~g~~~pt~iQ~~~i~~ll-~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
+..|...|+ +++.|...+..+. .+.+++++|+||||||.. +-.++..+...+ +..+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~---~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD---PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC---CCceEEEEcCCCcc
Confidence 344444565 5677877776544 567999999999999954 344554443222 23468888888877
No 262
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.61 E-value=0.18 Score=48.46 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=30.0
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
..++++|||+||.|... -.+.+..+++.-|....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 57899999999998643 35666677777777776666665544
No 263
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.60 E-value=0.18 Score=64.10 Aligned_cols=62 Identities=27% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHh--hhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAF--ALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~--~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
.+++-|.+++..++.+ +-+++.|..|+|||.+. ++-++..+... .+..|+.++||--.+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~----~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES----ERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc----cCceEEEEechHHHHHHH
Confidence 6899999999999976 56779999999999863 12222222111 235688999998776655
No 264
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.18 Score=55.12 Aligned_cols=134 Identities=17% Similarity=0.115 Sum_probs=66.3
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCC-----CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIP-----AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~-----~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~ 238 (729)
-+|+.||.|+||+..+ ..+...++....... .+..+.+++....|.++ .. ..++++.+..-.......
T Consensus 43 A~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~-~~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 43 AWLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AA-GAHGGLLTLERSWNEKGK- 115 (365)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hc-cCCCCeEEEecccccccc-
Confidence 4889999999999763 555556665432111 12344556554444332 11 233454433211000000
Q ss_pred HHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 239 ~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
.....|.|-..-.+...+.. ........+|||||+|.|... -.+.+..+++..|...-+|++|..+
T Consensus 116 -----~~~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 -----RLRTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred -----cccccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 00122333332223333322 223467889999999988532 3445556666555555555555443
No 265
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.22 Score=58.03 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=26.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
+...+++||||+|.|.... .+.+...+...|....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4678899999999986433 344555556655555555544
No 266
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.53 E-value=0.13 Score=57.91 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=58.9
Q ss_pred CCCCHH-HHHHHHHcCCCCCc----HHHHHHHHHHhc--CCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-CCCCcEEEE
Q 004808 130 LNLSRP-LLRACEALGYSKPT----PIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLI 201 (729)
Q Consensus 130 l~l~~~-l~~~l~~~g~~~pt----~iQ~~~i~~ll~--g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-~~~~~~vLI 201 (729)
.++... |+.+|...--..+. -||.+-=..+.. ++-+||+|..|||||.++ |+=+..|+++-. ......|||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiA-LHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIA-LHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHH-HHHHHHHHhccccccccCceEE
Confidence 344444 55666665444443 345554444444 455779999999999885 555555555433 233444999
Q ss_pred EcCcHHHHHHHHHHHHHHh
Q 004808 202 LTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~ 220 (729)
+.|.+.++.-+.+++-.|+
T Consensus 266 l~PN~vFleYis~VLPeLG 284 (747)
T COG3973 266 LGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EcCcHHHHHHHHHhchhhc
Confidence 9999999888888887764
No 267
>PLN03025 replication factor C subunit; Provisional
Probab=94.49 E-value=0.3 Score=52.53 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
..+.++||||+|.|.... ...+..++...+.... ++|+++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 357899999999986432 4445555655454444 4444443
No 268
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.48 E-value=0.24 Score=63.91 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 147 KPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~--dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
.+++.|..++..++.+. -+++.|..|+|||.+. -.++..+.... ...+..|+.++||--.|.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~-~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP-ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh-cccCceEEEECCcHHHHHHH
Confidence 68999999999999864 5679999999999762 33333332111 11244688999998776654
No 269
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.44 E-value=0.16 Score=49.73 Aligned_cols=48 Identities=23% Similarity=0.072 Sum_probs=29.7
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
+++.|++|+|||...+-.+.+.+ .. +.+|++++. -+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~-----g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR-----GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC-----CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999976433334333 22 234777654 45556666666554
No 270
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.43 E-value=0.11 Score=54.17 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
.++++.||+|+|||...
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999753
No 271
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.36 E-value=0.73 Score=53.51 Aligned_cols=152 Identities=12% Similarity=0.152 Sum_probs=82.4
Q ss_pred CCCCcHHHHHHHHHHhc---CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 145 YSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~---g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
-.-|.|.=.+-|..++. .+-.++.+|=|.|||.+..+.++..+.. .+.+|+|++|...-+.+++..+..+..
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 33456666666666554 4567789999999998754444332221 234799999999999999888877765
Q ss_pred ccC-------c-eEEEEecCCChHH--HHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHH
Q 004808 222 FTD-------I-RCCLVVGGLSTKM--QETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290 (729)
Q Consensus 222 ~~~-------i-~v~~~~gg~~~~~--~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~ 290 (729)
..+ . .+..+.||...-. ...... +.+.|.+.+-. .....-..+++||||||..+-. .
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~----~ 309 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNP----G 309 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCH----H
Confidence 221 1 1222222211000 000000 11223332211 1122223568999999998754 3
Q ss_pred HHHHHHHhcC-cCceEEEEecccc
Q 004808 291 EIHELVRLCP-KRRQTMLFSATLT 313 (729)
Q Consensus 291 ~i~~il~~~~-~~~q~il~SATl~ 313 (729)
.+..++-.+. ...+++++|.+.+
T Consensus 310 ~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 310 ALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHHHccCCCceEEEeCCCC
Confidence 3333443333 3566777777763
No 272
>PRK09183 transposase/IS protein; Provisional
Probab=94.35 E-value=0.24 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.7
Q ss_pred HhcCCCEEEEcCCCchhhHHh
Q 004808 159 ALTGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a~ 179 (729)
+-.|.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 446889999999999999754
No 273
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.33 E-value=0.59 Score=48.91 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=68.0
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC-c-H-HHHHHHHHHHHHHhhccCceEEEEecCCChH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-R-ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P-t-r-eLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~ 237 (729)
.+..+++.+++|+|||..+.+-+. .+... +.++.++.. + | ....|+... +...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~~-----~~~v~~i~~D~~ri~~~~ql~~~----~~~~~~~~~~-------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHGK-----KKTVGFITTDHSRIGTVQQLQDY----VKTIGFEVIA-------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHHc-----CCeEEEEecCCCCHHHHHHHHHH----hhhcCceEEe--------
Confidence 346778999999999986543322 22221 123443332 2 2 344444332 2222332221
Q ss_pred HHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccch-h
Q 004808 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTE-D 315 (729)
Q Consensus 238 ~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~~-~ 315 (729)
..+|..|...+... -....+++||||-+-+.. +......+..++....+..-++.+|||... +
T Consensus 136 -------------~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 -------------VRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred -------------cCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 12444454444321 112356789999998764 222344555555555444446779998754 5
Q ss_pred HHHHHHHh
Q 004808 316 VDELIKLS 323 (729)
Q Consensus 316 v~~l~~~~ 323 (729)
....+..+
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 66666554
No 274
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.53 Score=56.54 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchh
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
..+.++||||||+|.... .+.+..++..-|....+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 467899999999985332 34445555555555544443 443333
No 275
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.29 E-value=0.11 Score=60.02 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHH-HHHHHHhhcc
Q 004808 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFT 223 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~-~~~~~l~~~~ 223 (729)
..+|+|.+.+..+-.- +.|+++.++-+|||.+.+..+...+... +..+|++.||..+|..+. ..+.-+....
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-----PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-----CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 5689999999887664 6788999999999986433332222222 224899999999998766 4454443322
Q ss_pred C-ceEEEEec----CCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 224 D-IRCCLVVG----GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 224 ~-i~v~~~~g----g~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
. ++ ..+.. ..........+. +..|.++.-. ....+.-..+.+|++||.|.+.
T Consensus 91 p~l~-~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 91 PVLR-RKLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHH-HHhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhcc
Confidence 1 11 11111 111111111122 2334333211 1113334567899999999985
No 276
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.39 Score=52.68 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEE
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~ 308 (729)
.....++||||+|.|....+ +.+...+...|....+|+.
T Consensus 117 ~~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred cCCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 34678999999999865333 2344445554555544444
No 277
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.27 E-value=0.18 Score=58.16 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred CCeeEEEEeCcchhhcCC-hHHHHHHHHHhcCc-CceEEEEecccchhH
Q 004808 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~-~~q~il~SATl~~~v 316 (729)
.++++||||++|.+.... ....++.+++.+.. ..++|+.|-..+.++
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 346789999999886433 35666777776654 456665554444444
No 278
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.27 E-value=0.15 Score=61.44 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
..++|-|.+++.. ....++|.|..|||||.+. +.-+.+++... +..+-++|+|+-|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l-~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVL-THRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHH-HHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3588999999864 3567999999999999874 33334444322 23456799999999999999888887643
No 279
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.11 Score=58.41 Aligned_cols=16 Identities=25% Similarity=0.065 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-+|++||.|+|||.++
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3699999999999864
No 280
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.22 E-value=0.32 Score=54.80 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCeeEEEEeCcchhhcCC-hHHHHHHHHHhcC-cCceEEEEecccchhHH
Q 004808 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~g-f~~~i~~il~~~~-~~~q~il~SATl~~~v~ 317 (729)
...++|||||+|.+.... ....+..+++.+. ...|+|+.|-+.+..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 356699999999986532 3455566655443 34555555545555544
No 281
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.20 E-value=0.2 Score=50.87 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCeeEEEEeCcchhhcC-ChHHHHHHHHHhcCc-CceEEEEecccchhH
Q 004808 270 DDLAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~-gf~~~i~~il~~~~~-~~q~il~SATl~~~v 316 (729)
..+++||||..|.+... .....+..+++.+.. ..++|+.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 35669999999998743 245666666666543 456666665666544
No 282
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.4 Score=55.59 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=25.4
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
.....++||||||.|.... .+.+..++...|...-+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3578899999999987543 334455555555554444444
No 283
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.38 Score=54.49 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
...+.++||||+|.|....| +.+...+...|+...+|+ .+|-
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIl-atte 155 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFIL-ATTE 155 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEE-EeCC
Confidence 45788999999998865433 344455555454444444 3343
No 284
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.24 Score=53.45 Aligned_cols=42 Identities=19% Similarity=0.016 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHhcC----CCEEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 148 PTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g----~dvlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
++|+|...+..++.. +-+|+.||.|.|||..+ ..+...++..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC~ 49 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLCE 49 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 468888888877764 24789999999999754 4444555543
No 285
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.14 E-value=0.5 Score=45.25 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=43.6
Q ss_pred CCCeeEEEEeCcchhhcCCh--HHHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 269 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf--~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
...+++|||||+-..++.|+ ...+..+++..|...-+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 46788999999999888775 467788888888888888888888888877654
No 286
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.09 E-value=0.17 Score=56.28 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHh
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~ 179 (729)
+-.....++..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44556667778888999999999999999764
No 287
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.08 E-value=0.27 Score=53.08 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEE
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~ 308 (729)
....+|||||+|.+... ....+..++...+....+|+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~ 161 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIA 161 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEE
Confidence 45679999999987532 344555666665555555443
No 288
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.90 E-value=0.4 Score=54.00 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=27.8
Q ss_pred CeeEEEEeCcchhhcCC-hHHHHHHHHHhcCc-CceEEEEecccchhHHHH
Q 004808 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDVDEL 319 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~g-f~~~i~~il~~~~~-~~q~il~SATl~~~v~~l 319 (729)
..++|||||+|.+.+.. ....+..+++.+.. ..++|+.|-..+..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 35589999999886432 33455555555443 345444444444444433
No 289
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.87 E-value=0.11 Score=50.40 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=43.7
Q ss_pred CCCeeEEEEeCcchhhcCChH--HHHHHHHHhcCcCceEEEEecccchhHHHHHHH
Q 004808 269 LDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~--~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~ 322 (729)
-..+++||+||+-..+++|+. ..+..+++..|...-+|+..-.+|+.+.+++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 357889999999999988864 567788888888888888888888888776643
No 290
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.86 E-value=0.31 Score=57.90 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=17.4
Q ss_pred CE-EEEcCCCchhhHHhhhhhhHHHh
Q 004808 164 DI-CGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 164 dv-lv~a~TGsGKT~a~~lpil~~l~ 188 (729)
++ +|.|+||+|||++. ..++..|.
T Consensus 782 nvLYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 45 59999999999873 45555553
No 291
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.85 E-value=0.35 Score=57.33 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+-+++.||||+|||++.
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34569999999999864
No 292
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.78 E-value=0.45 Score=55.75 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
+..+++|||||+|.|.... .+.+..++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 4567899999999875432 334555566555556555544
No 293
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.73 E-value=0.19 Score=55.76 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=73.2
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH-HHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre-La~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l 243 (729)
.++.|..|||||.+.++-++..++... ++.++||+-|+.. |..-++..+.......++....-...... ...+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~---~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~i~~ 77 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK---KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---EIKI 77 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC---CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---EEEe
Confidence 578999999999988877777776641 2357899999986 55556666665444333321111111100 0001
Q ss_pred hc-CCCeEEECc-hHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC--cCceEEEEecccchh
Q 004808 244 RS-MPDIVVATP-GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTMLFSATLTED 315 (729)
Q Consensus 244 ~~-~~dIvI~TP-~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~--~~~q~il~SATl~~~ 315 (729)
.. +..|++..- ...-. ......+.++++|||..+... .+..++..+. .....+++|.||...
T Consensus 78 ~~~g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred cCCCeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 11 334444432 11111 111234689999999987432 3333333332 222247888888643
No 294
>PF05729 NACHT: NACHT domain
Probab=93.72 E-value=0.29 Score=46.49 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=26.5
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
+++.|+.|+|||... ..+...+...........+++..+.+.+..
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 679999999999763 445555544332111123555566665544
No 295
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.67 E-value=0.71 Score=51.38 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=63.8
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC--cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHH-H
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP--TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ-E 240 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P--treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~-~ 240 (729)
-++++|++|+|||++.. -+... +... +.+|++++. .|..|.+ +++.++...++.+.....+...... .
T Consensus 102 vi~lvG~~GvGKTTtaa-KLA~~-l~~~----G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i~~ 172 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT-KLAYY-YQRK----GFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKIAS 172 (429)
T ss_pred EEEEECCCCCCHHHHHH-HHHHH-HHHC----CCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHHHH
Confidence 35699999999997532 22222 2221 123555443 3544443 3444444456655443333221100 0
Q ss_pred HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHH
Q 004808 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (729)
Q Consensus 241 ~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l 319 (729)
.. +..+. -..+++||||=+-++-. ......+..+...+.+..-+++++||...+....
T Consensus 173 ~~---------------l~~~~------~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 173 EG---------------VEKFK------KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred HH---------------HHHHH------hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 00 01111 12345666666655432 1234555555555555556788888887665555
Q ss_pred HHHh
Q 004808 320 IKLS 323 (729)
Q Consensus 320 ~~~~ 323 (729)
+..+
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 5444
No 296
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.37 Score=53.49 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
|.-+.+.||||+|||.....-+-..+..... ..-.+|.+.+--.+ ..+.+..++...++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~---~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v----------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGA---DKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI----------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---CeEEEEecCCcchh--HHHHHHHHHHHcCCceecC-----------
Confidence 4456799999999998643222222222111 11245556653332 1233444444445544322
Q ss_pred HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-CChHHHHHHHHHhcCcCceEEEEecccchh-HHHH
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTED-VDEL 319 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~-v~~l 319 (729)
.++.-+...+.. +...++++||.+-+.-. ......+..+....++..-++++|||.... +.+.
T Consensus 255 ----------~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 255 ----------KDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ----------CCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 222222222221 34556788887643321 112233333322233344568899997544 4444
Q ss_pred HHHh
Q 004808 320 IKLS 323 (729)
Q Consensus 320 ~~~~ 323 (729)
+..+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4444
No 297
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.3 Score=56.90 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
...++++||||+|.|....|. .+...+...|....+|+ .+|-+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd~ 164 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTDP 164 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECCc
Confidence 356889999999998754433 23344444344444444 44433
No 298
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.61 E-value=0.13 Score=54.67 Aligned_cols=61 Identities=30% Similarity=0.290 Sum_probs=45.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 143 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~-dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
..|..+++-|...+-.+..++ ++|++|.||||||+. |-+|..... ..-+++.+--|.||-.
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-----~~eRvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-----SDERVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-----CcccEEEEeehhhhcc
Confidence 357789999999998888876 999999999999974 223322111 2227899988888843
No 299
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.60 E-value=0.11 Score=47.49 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+|+.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999975
No 300
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.58 E-value=0.83 Score=48.79 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCeeEEEEeCcchhh--cCChHHHHHHHHHhc-CcCceEEEEecccchhHHH
Q 004808 270 DDLAVLILDEADRLL--ELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDE 318 (729)
Q Consensus 270 ~~i~~lVvDEah~ll--~~gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~ 318 (729)
...++||||+..... +|.....+..|++.. .....|++.|--...++..
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 456699999998543 443223445565544 3445566666554444443
No 301
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.57 E-value=0.34 Score=51.91 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=25.7
Q ss_pred CeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
..++|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456899999999843334555666677666666555544
No 302
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.41 Score=54.59 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+.+|++||.|+|||.++
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36889999999999864
No 303
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.52 E-value=0.84 Score=47.91 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCeeEEEEeCcchhh-cCChHHHHHHHHHhcC------cCceEEEEecccchhHHHHHHHh
Q 004808 270 DDLAVLILDEADRLL-ELGFSAEIHELVRLCP------KRRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 270 ~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~------~~~q~il~SATl~~~v~~l~~~~ 323 (729)
..+++||||=+-++. +.....++..+...++ +.--++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 345677777776654 2223445555555544 44457888888765544444333
No 304
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.47 E-value=1.2 Score=46.46 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=21.9
Q ss_pred CcHHHHHHHHHHh----cCC-CEEEEcCCCchhhHHh
Q 004808 148 PTPIQAACIPLAL----TGR-DICGSAITGSGKTAAF 179 (729)
Q Consensus 148 pt~iQ~~~i~~ll----~g~-dvlv~a~TGsGKT~a~ 179 (729)
+++.+.+++..+. .+. .+++.|++|+|||...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 5556666665543 233 5779999999999763
No 305
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.47 E-value=0.36 Score=49.04 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=25.7
Q ss_pred eeEEEEeCcchhhcCChHHHHHHHHHhcCcCce-EEEEecccch
Q 004808 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-TMLFSATLTE 314 (729)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q-~il~SATl~~ 314 (729)
.++|||||+|.+... -...+..+++....... +++++++.++
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 448999999987543 24445555554443333 5777777543
No 306
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.46 E-value=0.072 Score=61.28 Aligned_cols=158 Identities=19% Similarity=0.184 Sum_probs=92.0
Q ss_pred CCCCcHHHHHHHHHHhc--------CC--CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHH
Q 004808 145 YSKPTPIQAACIPLALT--------GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~--------g~--dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~ 214 (729)
-..++.+|.+++-.+-+ |. ..|+....|-||-.+..-.|++..+... .++|++.-...|-....+
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR-----KrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR-----KRALWFSVSSDLKFDAER 336 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc-----ceeEEEEeccccccchhh
Confidence 34678889888865543 21 4666666666665443344566655443 368999888888766666
Q ss_pred HHHHHhhccCceEEEEec----CCChHHHHHHHhcCCCeEEECchHHHHHHhccCcc-----------CC-CCeeEEEEe
Q 004808 215 MIEKIAQFTDIRCCLVVG----GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-----------DL-DDLAVLILD 278 (729)
Q Consensus 215 ~~~~l~~~~~i~v~~~~g----g~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~-----------~l-~~i~~lVvD 278 (729)
.+..+. .++|.|..+.- -.+.+... ...-.|+++|+-.|+-........ .- ..=.+||+|
T Consensus 337 DL~Dig-A~~I~V~alnK~KYakIss~en~---n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 337 DLRDIG-ATGIAVHALNKFKYAKISSKENT---NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred chhhcC-CCCccceehhhcccccccccccC---CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 666543 34555544321 11111110 111359999998876554321100 01 112489999
Q ss_pred CcchhhcC---------ChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 279 EADRLLEL---------GFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 279 Eah~ll~~---------gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
|||.--|. -....+..+.+.+|. .++++-|||=
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATG 454 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATG 454 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccC
Confidence 99986551 134566777777764 5689999983
No 307
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.45 E-value=0.81 Score=48.71 Aligned_cols=66 Identities=32% Similarity=0.329 Sum_probs=41.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 138 RACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 138 ~~l~~~g~~~pt~iQ~~~i~~ll-~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
..+...|. +++-|...+..++ .+.+++++|+||||||.. +-.++..+...+ +..+++++=.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~---~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND---PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC---CCceEEEECCchhhc
Confidence 33444453 4555666665544 467999999999999975 234444432221 234688888888873
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=0.49 Score=55.03 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=25.5
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
..++++||||+|+|.... ...+..++...|....+|+ .+|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 467899999999876543 3445556666555554444 444
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=1.1 Score=48.99 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
++-+++.||||+|||...
T Consensus 206 ~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456779999999999764
No 310
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.35 E-value=0.44 Score=56.83 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=64.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-cccccCCCCccEEE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVI 443 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-~~rGlDi~~v~~VI 443 (729)
.+.+++|.+||...+......| ...++.+..+||+++..+|..++..+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3568999999998887665554 455799999999999999999999999999999999974 44567788999988
Q ss_pred EeC
Q 004808 444 NYA 446 (729)
Q Consensus 444 ~~d 446 (729)
.=.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 543
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.29 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=20.2
Q ss_pred CCC-EEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 162 GRD-ICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 162 g~d-vlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
... +|+.||.|+|||.++ +.+...++..
T Consensus 23 ~~halL~~Gp~G~Gktt~a-~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAA-LALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHHH-HHHHHHHhCC
Confidence 345 899999999999874 5555555543
No 312
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.21 E-value=0.46 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=18.4
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.++++.|++|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999986 34455544
No 313
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.20 E-value=0.25 Score=52.96 Aligned_cols=64 Identities=31% Similarity=0.304 Sum_probs=42.3
Q ss_pred HHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 140 CEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 140 l~~~g~~~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
+...|+ +++.|...+..++. +.++|++|+||||||.. +-.++..+...+ +..+++++=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~---~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA---PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC---CCceEEEecCCcccc
Confidence 334454 56778777765555 57899999999999975 344455543322 233678888888873
No 314
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.13 E-value=1 Score=49.78 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=30.4
Q ss_pred CeeEEEEeCcchhh-cCChHHHHHHHHHhcC---cCceEEEEecccch-hHHHHHHHh
Q 004808 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCP---KRRQTMLFSATLTE-DVDELIKLS 323 (729)
Q Consensus 271 ~i~~lVvDEah~ll-~~gf~~~i~~il~~~~---~~~q~il~SATl~~-~v~~l~~~~ 323 (729)
.+++||||=+-++. +......+..++.... +..-++++|||... .+...+..+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45678888766543 2223445555555442 22356888999876 454444444
No 315
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.02 E-value=0.54 Score=54.34 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=81.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc--cCceEEEEecCCChHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF--TDIRCCLVVGGLSTKMQ 239 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~--~~i~v~~~~gg~~~~~~ 239 (729)
.+-.++..|=-.|||.... +++..++.. ..+.++++++|.+..+..+++.+..+... ++..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s---~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT---FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh---CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 3568889999999998644 565555432 23557999999999999999988876552 1222222222 111
Q ss_pred HHHHhcC--CCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchh
Q 004808 240 ETALRSM--PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 240 ~~~l~~~--~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
.-.+.++ +.|.++|- .+.....-..+.+||||||+.+-...+...+ -.+.. .+.++|++|.|.+.+
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns~~ 393 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNTGK 393 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCCCc
Confidence 0011112 24555531 2222344457889999999988653322222 22222 378899999987643
No 316
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.98 E-value=0.5 Score=55.32 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEE
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~ 308 (729)
..+.++||||||+|.... .+.+..++..-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 567899999999887544 34444455554544444443
No 317
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.94 E-value=0.35 Score=50.54 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEe--cCCCh
Q 004808 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV--GGLST 236 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~--gg~~~ 236 (729)
+..|.-+++.|++|+|||...+..+.+.+.. .+..|+++.- -+-..++...+.... .++.+.... .....
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~-E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~ 98 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISL-EEPVVRTARRLLGQY--AGKRLHLPDTVFIYTL 98 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEc-ccCHHHHHHHHHHHH--hCCCcccCCccccccH
Confidence 3456778899999999997543333333221 1234677653 222334444443321 122211110 11111
Q ss_pred HHHH---HHHhcCCCeEEE------CchHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 237 KMQE---TALRSMPDIVVA------TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 237 ~~~~---~~l~~~~dIvI~------TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
.... ..+.....+++. |+..++..+... ..-..+++||||..+.+..
T Consensus 99 ~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 99 EEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM--AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH--HhcCCceEEEECCHHHHhc
Confidence 1111 112212223322 344455554431 1123678999999998764
No 318
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.93 E-value=0.55 Score=50.49 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=28.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
...++++|||+||.|... -.+.+..+++.-|...-+|+.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 467889999999998743 355566666665655555555443
No 319
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.83 E-value=0.75 Score=49.79 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHhc--C---CCEEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 149 TPIQAACIPLALT--G---RDICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 149 t~iQ~~~i~~ll~--g---~dvlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
+|+|...+..+.. + +-+|+.||.|.||+..+ ..+...++..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~ 48 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCE 48 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCC
Confidence 5667666666554 2 35789999999999764 4445555554
No 320
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=0.69 Score=53.21 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
.....++||||||+|.... .+.+...+...|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999986533 345556666655555555544
No 321
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.74 E-value=0.76 Score=50.84 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=28.2
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhH
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v 316 (729)
.....++||||+|+|.... .+.+..++..-|... ++++++|-+..+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 3577899999999996432 345555665544444 455555544333
No 322
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.73 E-value=0.37 Score=55.65 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
....++||||||.|.... ...+...+...|... +++|.+|-+
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~t-vfIL~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHV-VFIFATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcE-EEEEECCCh
Confidence 457899999999885332 334444555544443 334444433
No 323
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.85 Score=52.58 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...+.++||||+|.|....+ +.+...+...|....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 45678999999998865333 34455555555556555554
No 324
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.66 E-value=0.43 Score=57.07 Aligned_cols=72 Identities=24% Similarity=0.234 Sum_probs=57.0
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc----C-Cceee-ccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA----A-LKAAE-LHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----~-~~~~~-lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~ 430 (729)
..+..+.-...+.+++|.+||...+.+..+.|... + +.+.. +|+.|+..++..++++|.+|.++|||+|..+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34444555556789999999998888887777543 2 44433 9999999999999999999999999999764
No 325
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.49 E-value=0.31 Score=52.77 Aligned_cols=18 Identities=22% Similarity=0.181 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchhhHHhh
Q 004808 163 RDICGSAITGSGKTAAFA 180 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~ 180 (729)
.+.|++||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 379999999999998643
No 326
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.53 Score=52.32 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
+....++||||+|.|....+ ..+...+...|... +++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCe-EEEEEeC
Confidence 46778999999999864322 23333444333333 3444443
No 327
>PRK04195 replication factor C large subunit; Provisional
Probab=92.37 E-value=0.77 Score=52.44 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+|+.||+|+|||.+
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 328
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.35 E-value=0.73 Score=48.54 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhc---CCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLY---RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~---~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~ 239 (729)
.++++.|+||.|||.+. --+...+. .......|.++|-+|...-....+..+-... +..+. ...+....
T Consensus 62 p~lLivG~snnGKT~Ii--~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII--ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHH--HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCCHHHH
Confidence 58999999999999742 22222211 1111234567777887765555555544321 22111 11111110
Q ss_pred HHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChH--HHHHHHHHhcCcCce
Q 004808 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQ 304 (729)
Q Consensus 240 ~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~--~~i~~il~~~~~~~q 304 (729)
.. ..+.+|.. -.+++|||||.|.++..... ..+...++.+....+
T Consensus 134 ~~--------------~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 134 EQ--------------QVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred HH--------------HHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 00 11222322 35679999999999875533 333444555544433
No 329
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.32 E-value=0.53 Score=56.07 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~ 447 (729)
+.++||.+|+...+.++...|.. .+..+..+||+++..+|...+..+..|..+|+|+|..+.. +.+.++.+||.-+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 56899999999999988888865 4788999999999999999999999999999999974432 56778888886553
No 330
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.32 E-value=0.52 Score=53.24 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|+-+++.||||+|||++.
T Consensus 256 g~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTT 273 (484)
T ss_pred CcEEEEECCCCccHHHHH
Confidence 344669999999999864
No 331
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.31 E-value=0.7 Score=61.14 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHhcCC--CEEEEcCCCchhhHHhh---hhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 146 SKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFA---LPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~--dvlv~a~TGsGKT~a~~---lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
..+++.|..++..++.+. -+++.|..|+|||.+.. -++.+.+ .. .+..|+.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh----cCCeEEEEeChHHHHHHH
Confidence 368999999999998864 45689999999997631 2233322 11 244689999997776554
No 332
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.30 E-value=0.82 Score=44.33 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=37.0
Q ss_pred CCCeeEEEEeCcchhhcCChH--HHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 269 LDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~--~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
-..+++||+||+-..++.|+. ..+..++...|...-+|+..-.+|+.+.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 467889999999999988864 56778888888888888888888888877664
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.72 Score=52.77 Aligned_cols=23 Identities=22% Similarity=-0.009 Sum_probs=16.9
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
+|++||.|+|||.+. ..+...+.
T Consensus 39 ~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh
Confidence 599999999999874 34444444
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.27 E-value=0.34 Score=49.17 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc-----CceEEEEecCCCh
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-----DIRCCLVVGGLST 236 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~-----~i~v~~~~gg~~~ 236 (729)
|.-+++.|++|+|||...+..+.+.+...+ -++++++- .+-..++.+.+..+.-.. .-.+.++......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~g-----e~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFG-----EKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-------EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcC-----CcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 467889999999999765445555544302 23677663 344455556655442100 0001111110000
Q ss_pred HHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc----CChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----LGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 237 ~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~----~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
. .. . -..+..++..+... +.-....++|||-...+.. ..+...+..+...+.....++++++..
T Consensus 93 ~-~~-------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 93 I-GW-------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp S-T--------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c-cc-------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 0 00 0 11233333333321 1111226999999998832 224556666777666666777777774
No 335
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.24 E-value=0.61 Score=45.73 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=53.8
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l 243 (729)
=.++++|++||||.. +|-.+.+.... +.+++|..|...- ..+...+.-.-|.+
T Consensus 6 l~~i~gpM~SGKT~e-Ll~r~~~~~~~-----g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~-------- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEE-LLRRARRYKEA-----GMKVLVFKPAIDT-------------RYGVGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEccCcCcchHH-HHHHHHHHHHc-----CCeEEEEeccccc-------------ccccceeeeccCCc--------
Confidence 357899999999986 34444444333 3358888885321 01111122222222
Q ss_pred hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 244 ~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
.+.++|-++..+.+++.... . ...+.+|.||||+-+.
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~-~-~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALH-E-KPPVDCVLIDEAQFFD 95 (201)
T ss_pred --ccceecCChHHHHHHHHhcc-c-CCCcCEEEEehhHhCC
Confidence 24577788888888887531 1 1227899999999643
No 336
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.72 Score=53.78 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=25.0
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...++++||||+|.|.... .+.+..++...|...-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4578899999999876433 345555555555544444433
No 337
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.12 E-value=0.58 Score=54.35 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=23.6
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
...+.++||||+|.|....+ ..+...+...|... +++|.+|-
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~-naLLKtLEepp~~~-ifIlatt~ 158 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAF-NALLKTLEEPPAHV-IFILATTE 158 (559)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHhcCCCCCe-EEEEEeCC
Confidence 45788999999998864332 23333444433333 33344443
No 338
>CHL00181 cbbX CbbX; Provisional
Probab=92.07 E-value=0.53 Score=49.81 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|.++++.||+|+|||.++
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999864
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=92.04 E-value=1.6 Score=48.90 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-++++|++|+|||++.
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3668999999999763
No 340
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.83 E-value=1.6 Score=48.72 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-++++|++|+|||++.
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3669999999999863
No 341
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=0.97 Score=51.28 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
.+|++||+|+|||..+
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 342
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.59 E-value=0.79 Score=53.64 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
+....+|||||+|.|.... .+.+...+...+.. -+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCC-eEEEEEeC
Confidence 4578899999999886432 23344444444433 34444443
No 343
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.53 E-value=0.5 Score=52.22 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=77.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 004808 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (729)
Q Consensus 136 l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~ 215 (729)
++..++. .+..+..-|..+.-..-.|.- .+.|-.|||||...++ -+.+|+.. .+..+++|.+=|+.|+.++...
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~-Kaa~lh~k---nPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAH-KAAELHSK---NPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHH-HHHHHhcC---CCCceEEEEeehHHHHHHHHHH
Confidence 4444433 233455567666433334444 5677889999986433 33344332 2455899999999999999988
Q ss_pred HHHHhhc--------cCceEEEEecCCChHHHHHHHhcCC---CeEEECc----hHHHHHHhccCccCCCCeeEEEEeCc
Q 004808 216 IEKIAQF--------TDIRCCLVVGGLSTKMQETALRSMP---DIVVATP----GRMIDHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 216 ~~~l~~~--------~~i~v~~~~gg~~~~~~~~~l~~~~---dIvI~TP----~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (729)
+.+|+-. ..+-++.-.||.+...........+ .+-++-- ..++..+-+. .-+...+++|.|||+
T Consensus 226 v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~-~~~~~~yD~ilIDE~ 304 (660)
T COG3972 226 VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD-INNKKAYDYILIDES 304 (660)
T ss_pred HHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh-hhccccccEEEeccc
Confidence 8887631 1233444456654433222222111 1222211 1122222221 223677899999999
Q ss_pred chh
Q 004808 281 DRL 283 (729)
Q Consensus 281 h~l 283 (729)
+-.
T Consensus 305 QDF 307 (660)
T COG3972 305 QDF 307 (660)
T ss_pred ccC
Confidence 864
No 344
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.53 E-value=1.1 Score=48.02 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
...++++|||+||.|... -.+.+..+++.-|...-+|+.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 467889999999998643 345566666665555555555544
No 345
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.46 E-value=0.53 Score=57.41 Aligned_cols=105 Identities=18% Similarity=0.270 Sum_probs=80.3
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCce-EEEEcCccccccCCCCccEEEEe
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD-FLIATDVAARGLDIIGVQTVINY 445 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~-vLVaTd~~~rGlDi~~v~~VI~~ 445 (729)
.....++|||+........+...|...++.+..--+ .++-...+..|.+ +. +||-+...+-|+|+-...||+..
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhhee
Confidence 444578999999988888888888777776544333 3344556777765 44 46678888999999999999999
Q ss_pred CCCCChhhHHHHhcccccCCCc--cEEEEEecc
Q 004808 446 ACPRDLTSYVHRVGRTARAGRE--GYAVTFVTD 476 (729)
Q Consensus 446 d~P~s~~~yiQriGRagR~G~~--G~~i~l~~~ 476 (729)
++--|+..-.|.+||+.|.|+. ..+.-|+-.
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~ 1325 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVN 1325 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccchhhhhhhhc
Confidence 9999999999999999999975 344444443
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.39 E-value=0.32 Score=51.33 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
++.++++||||+|||.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346779999999999763
No 347
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.35 E-value=1.7 Score=52.26 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=26.3
Q ss_pred eEEEEeCcchhhcCCh----HHHHHHHHHhcCcCceEEEEecccchhH
Q 004808 273 AVLILDEADRLLELGF----SAEIHELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 273 ~~lVvDEah~ll~~gf----~~~i~~il~~~~~~~q~il~SATl~~~v 316 (729)
.+|+|||+|.++..|- ...+..++..+-...++.++.||-.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 3899999999975432 2333344443333445667777765554
No 348
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.30 E-value=0.7 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=18.3
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.++++.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999976 34455544
No 349
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.26 E-value=1.1 Score=43.73 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=42.0
Q ss_pred CCeeEEEEeCcchhhcCCh--HHHHHHHHHhcCcCceEEEEecccchhHHHHHHHh
Q 004808 270 DDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf--~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 323 (729)
..+++||+||.-..+.+|+ .+.+..+++.-|...-+|+..-..++.+.+++.+.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 4688999999999998875 46777888877777667776677888888777553
No 350
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.25 E-value=1.5 Score=44.72 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=29.5
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
.|.-+++.|++|+|||... +.++..+... +.++++++.. +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~~-----g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQN-----GYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhC-----CCcEEEEeCC-CCHHHHHHHHHH
Confidence 4677889999999999763 3333333322 2346777643 333444444443
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.25 E-value=0.86 Score=46.76 Aligned_cols=52 Identities=17% Similarity=0.071 Sum_probs=33.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
|.-+++.|++|+|||...+..+.+.+ .+ +-++++++ +-+-..|+.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~-----ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QM-----GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-Hc-----CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 56788999999999986544455544 22 22467766 4556667766666543
No 352
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.25 E-value=0.86 Score=49.33 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=28.2
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
.+.++++|||+||.|... -.+.+..+++.-|...-+|++|.-
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 467889999999998643 355566666665555555555543
No 353
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.22 E-value=0.73 Score=48.72 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999754
No 354
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=1.9 Score=50.59 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
+....++||||+|.|.... .+.+...+...|...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4677899999999986433 234444455544443334433
No 355
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.21 E-value=0.67 Score=53.11 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d 446 (729)
+.++||.+|+...+..+...|.. .+..+..+||+++..+|.++.....+|..+|+|+|..+-. +.+.++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 56899999999999888888765 3778999999999999999999999999999999975432 4567888888544
No 356
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.16 E-value=0.54 Score=52.62 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHhcCCC--EEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 149 TPIQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~d--vlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
++.|...+..+++... +|+.||||||||.. +..+|+.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 5677777777777543 45899999999987 46677766543
No 357
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.16 E-value=1.1 Score=50.01 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
..+++.||+|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37899999999999753
No 358
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=2.5 Score=47.42 Aligned_cols=139 Identities=22% Similarity=0.241 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHH----Hhc--------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCc
Q 004808 130 LNLSRPLLRACEALGYSKPTPIQAACIPL----ALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI 197 (729)
Q Consensus 130 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~----ll~--------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 197 (729)
+|.+..-+..+...|.-.-.|.=..++.. +.+ -..+|+.||.|||||..+.-.++.. .-|
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S--------~FP 565 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS--------DFP 565 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc--------CCC
Confidence 57788877777777665554444444322 111 1368999999999997543333211 234
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEE
Q 004808 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (729)
Q Consensus 198 ~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVv 277 (729)
-|=|+.|..-... +.......+.. .+.+ ..-+.+++|||
T Consensus 566 FvKiiSpe~miG~------------------------sEsaKc~~i~k----------~F~D-------AYkS~lsiivv 604 (744)
T KOG0741|consen 566 FVKIISPEDMIGL------------------------SESAKCAHIKK----------IFED-------AYKSPLSIIVV 604 (744)
T ss_pred eEEEeChHHccCc------------------------cHHHHHHHHHH----------HHHH-------hhcCcceEEEE
Confidence 5667777432211 11111110100 0111 12345779999
Q ss_pred eCcchhhcCC-----hHHHHHHH----HHhc-CcCceEEEEecccchhHH
Q 004808 278 DEADRLLELG-----FSAEIHEL----VRLC-PKRRQTMLFSATLTEDVD 317 (729)
Q Consensus 278 DEah~ll~~g-----f~~~i~~i----l~~~-~~~~q~il~SATl~~~v~ 317 (729)
|+..++++|. |.+.+.+. ++.. |+.+++++|..|-..++.
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL 654 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH
Confidence 9999999875 55444332 3333 345677777777554443
No 359
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.02 E-value=0.16 Score=61.56 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=4.2
Q ss_pred CCHHHHHHHH
Q 004808 132 LSRPLLRACE 141 (729)
Q Consensus 132 l~~~l~~~l~ 141 (729)
|...|...++
T Consensus 737 lD~~La~~Fk 746 (784)
T PF04931_consen 737 LDEQLAAIFK 746 (784)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 360
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.00 E-value=1 Score=53.30 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-ccccCCCCccEEE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~-~rGlDi~~v~~VI 443 (729)
.+..++|.+||...+......+ ...|+.+..+||+++..+|..++..+.+|..+|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3568999999998888765544 4457999999999999999999999999999999999755 4567788889888
Q ss_pred EeC
Q 004808 444 NYA 446 (729)
Q Consensus 444 ~~d 446 (729)
.=.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 543
No 361
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.88 E-value=2.6 Score=47.67 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcC
Q 004808 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 246 (729)
Q Consensus 171 TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~ 246 (729)
.+.|++..-++.+.+.+-.. ..|.+||.+-+.+-|.|++..+. .+.++++.+++|..+.......+ .+.
T Consensus 366 vF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 46777766655555554332 34558888999999999988886 45789999999997765544333 244
Q ss_pred CCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc
Q 004808 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (729)
Q Consensus 247 ~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (729)
..|+||| +.|.+ +++|.++.+||-+..-
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 7899999 45555 5889999999986543
No 362
>PHA00729 NTP-binding motif containing protein
Probab=90.85 E-value=1.6 Score=44.29 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=38.3
Q ss_pred CeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-CChH----HHHHHHHHhcCcCceEEEEecccchhHHHHHHH
Q 004808 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFS----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (729)
Q Consensus 248 dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~----~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~ 322 (729)
.+++.+...|+..+.... -....+.+||||++-.-+. ..|. .....+...+....+++.|...-+.++...+..
T Consensus 60 ~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 355555555655554321 1123456899999543221 1122 122334444444566777777766666666554
No 363
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=90.51 E-value=1.2 Score=54.67 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=64.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-ccccCCCCccEEEE
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVIN 444 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~-~rGlDi~~v~~VI~ 444 (729)
+.+++|.+||...+.+....|.. .++.+..++|.++..++..++..+..|+.+|+|+|..+ ...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 56899999999999887766553 46788899999999999999999999999999999743 45678889999885
Q ss_pred eC
Q 004808 445 YA 446 (729)
Q Consensus 445 ~d 446 (729)
-.
T Consensus 580 DE 581 (926)
T TIGR00580 580 DE 581 (926)
T ss_pred ec
Confidence 43
No 364
>PF13173 AAA_14: AAA domain
Probab=90.48 E-value=1.9 Score=39.53 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.2
Q ss_pred eeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEec
Q 004808 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (729)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SA 310 (729)
-.+|+|||+|.+-+ +...+..+.... +..++++.+.
T Consensus 62 ~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 34899999999864 466666666644 3445544443
No 365
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.46 E-value=1.1 Score=52.99 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred hHHHHHHHHhhcc--CCCeEEEEeCcHHHHHHHHHHHhhc-C-CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 004808 356 NQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLA-A-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (729)
Q Consensus 356 ~k~~~l~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~ 431 (729)
.+...++.++... .+..+||.+|....+.++...|... + ..+..+|++++..+|.+......+|+.+|+|.|..+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 3444444444322 3668999999999999888888754 3 6789999999999999999999999999999998654
Q ss_pred cccCCCCccEEEEeC
Q 004808 432 RGLDIIGVQTVINYA 446 (729)
Q Consensus 432 rGlDi~~v~~VI~~d 446 (729)
- +-+++...||..+
T Consensus 252 F-aP~~~LgLIIvdE 265 (665)
T PRK14873 252 F-APVEDLGLVAIWD 265 (665)
T ss_pred E-eccCCCCEEEEEc
Confidence 3 4556677777544
No 366
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=0.41 Score=57.97 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=38.1
Q ss_pred EECchHHHHHHhccCccCCCCeeEEEEeCcchhh-------cCCh---HHHHHHHHHhcCcCceEEEEecccchh
Q 004808 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-------ELGF---SAEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 251 I~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-------~~gf---~~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
|+.+++=+.++... ..-....++.+||+|-+- +.-+ ...+..++.-++..-|+++.+||..++
T Consensus 345 vgEaERqlrllFee--A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 345 VGEAERQLRLLFEE--AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred cCcHHHHHHHHHHH--HhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 44555544444431 223456689999999432 1112 344455555667788999999997544
No 367
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.32 E-value=0.67 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=17.3
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
.++++.||+|+|||.+ +.+|.+
T Consensus 49 P~liisGpPG~GKTTs--i~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTS--ILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhH--HHHHHH
Confidence 4899999999999986 334444
No 368
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.31 E-value=4.5 Score=43.65 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
....+++|+|++|.|-. .....+..+++..+....+|+ +++
T Consensus 111 ~~~~kV~iiEp~~~Ld~-~a~naLLk~LEep~~~~~~Il-vth 151 (325)
T PRK08699 111 RGGLRVILIHPAESMNL-QAANSLLKVLEEPPPQVVFLL-VSH 151 (325)
T ss_pred cCCceEEEEechhhCCH-HHHHHHHHHHHhCcCCCEEEE-EeC
Confidence 46788999999998754 346666667777665444444 444
No 369
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=1.6 Score=46.12 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH-----------HHHHHHHHHHHHhhccCceEEEE
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-----------LAVQVHSMIEKIAQFTDIRCCLV 230 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre-----------La~Q~~~~~~~l~~~~~i~v~~~ 230 (729)
++=+++.||+|+|||.. +-.+.++|--+.........||=...-. |+.++++.+..+....+.-|+++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46678999999999964 5566666654433322333555555443 45566666777766666666666
Q ss_pred ecCCC---------------h---------HHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC
Q 004808 231 VGGLS---------------T---------KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (729)
Q Consensus 231 ~gg~~---------------~---------~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (729)
+...- . -.|...++..+.|+|-|..-|.+ .++...||-||-....
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhheeec
Confidence 54311 0 12333455667776665444433 4556778999976655
Q ss_pred C
Q 004808 287 G 287 (729)
Q Consensus 287 g 287 (729)
|
T Consensus 325 G 325 (423)
T KOG0744|consen 325 G 325 (423)
T ss_pred C
Confidence 5
No 370
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.24 E-value=2.7 Score=41.30 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=24.2
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
.....+|||||+|.|... ....+...+...|... +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 457789999999998643 2334455555534333 3444443
No 371
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.23 E-value=0.42 Score=46.81 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=27.6
Q ss_pred HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH
Q 004808 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (729)
Q Consensus 158 ~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q 211 (729)
++-.++++++.|++|+|||..+ ..+...+.... ..|++ +++.+|...
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~g-----~~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLA-VAIANEAIRKG-----YSVLF-ITASDLLDE 89 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHTT-------EEE-EEHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHH-HHHHHHhccCC-----cceeE-eecCceecc
Confidence 3445789999999999999864 44455554432 22444 556666544
No 372
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.10 E-value=4.1 Score=43.43 Aligned_cols=130 Identities=21% Similarity=0.285 Sum_probs=71.2
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC--cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP--TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P--treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+++.|..|+|||++ +.=|.+.+... +.+|++.+- .|+-|. +++..|+...++.+.....|.++..
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~----g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa---- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQ----GKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA---- 208 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHC----CCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH----
Confidence 56899999999986 34444444332 224555543 244443 2344444445666554222222110
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-CChHHHHHHHHHhcCcCc-----eEEEE-ecccchh
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRR-----QTMLF-SATLTED 315 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~il~~~~~~~-----q~il~-SATl~~~ 315 (729)
...+.+... .-.++++|++|=|-||-+ .+.-.++..|.+.+.+.. .+++. -||...+
T Consensus 209 -------------VafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 209 -------------VAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred -------------HHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 112222221 134667888888888764 345677777777665543 24444 8998877
Q ss_pred HHHHHHHh
Q 004808 316 VDELIKLS 323 (729)
Q Consensus 316 v~~l~~~~ 323 (729)
....++.|
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 66555444
No 373
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.05 E-value=0.83 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=17.7
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
..+|+.||.|+|||.++ ..+...++
T Consensus 39 ~a~Lf~Gp~G~GKttlA-~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA-RILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHH-HHHHHHhc
Confidence 45789999999999864 33444443
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.04 E-value=5.3 Score=38.47 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.8
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
+++.|++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999863
No 375
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.02 E-value=1.5 Score=52.47 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
.++++.||+|+|||...
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37899999999999753
No 376
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.98 E-value=3.4 Score=44.10 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=24.4
Q ss_pred CeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988542 2345555666655555555544
No 377
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.74 E-value=0.41 Score=48.23 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
++|++||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6899999999999753
No 378
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.73 E-value=0.42 Score=51.84 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=29.6
Q ss_pred HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
+..+.+++++|+||||||.. +-.++..+ . ...+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i-~-----~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI-P-----PQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc-C-----CCCCEEEECCCcccc
Confidence 34578999999999999974 23333332 1 223577788888773
No 379
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.69 E-value=3.6 Score=49.62 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
..++|+.||+|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 358999999999999863
No 380
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.68 E-value=0.86 Score=51.93 Aligned_cols=44 Identities=32% Similarity=0.412 Sum_probs=28.3
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcC-CC-EEEEcCCCchhhHHhhhhhhHHH
Q 004808 140 CEALGYSKPTPIQAACIPLALTG-RD-ICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 140 l~~~g~~~pt~iQ~~~i~~ll~g-~d-vlv~a~TGsGKT~a~~lpil~~l 187 (729)
|..+|| .+-|.+.+..++.. +. ++++||||||||... ..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 345554 45566666666654 33 679999999999763 3345544
No 381
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.61 E-value=1.3 Score=50.71 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...+.++||||||.|.... .+.+...+...|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4678899999999986432 344555666666666656555
No 382
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.59 E-value=3.3 Score=44.43 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=32.8
Q ss_pred EECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEec
Q 004808 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (729)
Q Consensus 251 I~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SA 310 (729)
|-..-.+...+... ......+++|||+||.|... -.+.+..++...| ..-+|++|.
T Consensus 106 id~ir~i~~~l~~~--p~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 106 LEQIREIKRFLSRP--PLEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHHHccC--cccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 33333444444432 22467899999999998543 3455666666656 554444443
No 383
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.55 E-value=1.5 Score=48.45 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=33.3
Q ss_pred CeeEEEEeCcchhhcC-ChHHHHHHHHHhcCcC-ceEEEEecccchhHH
Q 004808 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKR-RQTMLFSATLTEDVD 317 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~il~~~~~~-~q~il~SATl~~~v~ 317 (729)
++++++||.++.+... .....++.+++.+... .|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6779999999998754 4566777777766543 377777766665554
No 384
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.46 E-value=2.4 Score=52.45 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=33.7
Q ss_pred eEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
-+||||++|.+-+......+..++...|....+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 38999999998766666788888888999999988887754
No 385
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=0.6 Score=50.45 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+|+++.+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 386
>PRK13764 ATPase; Provisional
Probab=89.30 E-value=1.6 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.4
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.+++++++|+||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 367899999999999975 34455554
No 387
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.30 E-value=1.3 Score=51.60 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.4
Q ss_pred CEEEEcCCCchhhHHhh
Q 004808 164 DICGSAITGSGKTAAFA 180 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~ 180 (729)
.+|++||.|+|||.+..
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999998753
No 388
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.28 E-value=1.4 Score=50.17 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+|+.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999975
No 389
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.10 E-value=0.52 Score=54.64 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=56.9
Q ss_pred HHHHHhcCCceEEEEcCccccccCCCCccEEE--------EeCCCCChhhHHHHhcccccCCC-ccEEEEEe-cc--CcH
Q 004808 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVI--------NYACPRDLTSYVHRVGRTARAGR-EGYAVTFV-TD--NDR 479 (729)
Q Consensus 412 ~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI--------~~d~P~s~~~yiQriGRagR~G~-~G~~i~l~-~~--~d~ 479 (729)
--++|.+|+..|-|-..+++-||.+..-+.|+ -+.+|||...-||..|||+|.++ .+--|+|+ ++ .++
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 34679999999999999999999997766554 58899999999999999999664 23333333 32 355
Q ss_pred HHHHHHHHH
Q 004808 480 SLLKAIAKR 488 (729)
Q Consensus 480 ~~l~~i~~~ 488 (729)
.+-.-+.++
T Consensus 929 RFAS~VAKR 937 (1300)
T KOG1513|consen 929 RFASIVAKR 937 (1300)
T ss_pred HHHHHHHHH
Confidence 554444433
No 390
>PRK10436 hypothetical protein; Provisional
Probab=89.00 E-value=0.88 Score=51.36 Aligned_cols=37 Identities=38% Similarity=0.385 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhc--CCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 150 PIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 150 ~iQ~~~i~~ll~--g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
+-|...+..++. +.-+|++||||||||... ..+|..+
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 445555555544 345779999999999863 4556654
No 391
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.95 E-value=5.1 Score=43.02 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCeeEEEEeCcchhhc-CChHHHHHHHHHhc------CcCceEEEEecccchhHHHHHHHh
Q 004808 270 DDLAVLILDEADRLLE-LGFSAEIHELVRLC------PKRRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~-~gf~~~i~~il~~~------~~~~q~il~SATl~~~v~~l~~~~ 323 (729)
.++++||||=+-++.. ......+..+...+ ++..-++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4566788888877542 22334555554432 233347888999765444334333
No 392
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.95 E-value=0.99 Score=52.52 Aligned_cols=44 Identities=32% Similarity=0.389 Sum_probs=28.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 140 CEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 140 l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
|..+|| .+-|...+..++.. .-++++||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 455665 35566666655553 35679999999999763 4556555
No 393
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.93 E-value=0.49 Score=52.30 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=35.6
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
++++.|+||||||..+++|.+-. . +..++|+=|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-----~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-----PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-----CCCEEEEccchhHHHHHHHHHHH
Confidence 57899999999999998887643 1 13489999999997665555443
No 394
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=88.91 E-value=3.3 Score=47.74 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHhcC------CC-EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 149 TPIQAACIPLALTG------RD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 149 t~iQ~~~i~~ll~g------~d-vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
|--|..++-.++.. +. +-+.|.-|-||++|.-|.+..++... -..+.|..|.-+=..-+++.+-
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-----ysnIyvtSPspeNlkTlFeFv~ 325 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-----YSNIYVTSPSPENLKTLFEFVF 325 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-----cceEEEcCCChHHHHHHHHHHH
Confidence 56788887655542 33 44889999999999888877776433 2348899999877666666544
No 395
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=88.86 E-value=3 Score=42.58 Aligned_cols=38 Identities=24% Similarity=0.056 Sum_probs=23.9
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
.|.-++++|++|+|||...+-.+++.+... +..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-----g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-----GKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCceEEEe
Confidence 456678999999999965433333333221 22477776
No 396
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=0.45 Score=51.86 Aligned_cols=25 Identities=40% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.-|+|+.+|||||||+.. -.|.+++
T Consensus 226 KSNvLllGPtGsGKTlla--qTLAr~l 250 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLA--QTLARVL 250 (564)
T ss_pred cccEEEECCCCCchhHHH--HHHHHHh
Confidence 357999999999999853 3444543
No 397
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.78 E-value=1.4 Score=50.60 Aligned_cols=68 Identities=29% Similarity=0.469 Sum_probs=55.2
Q ss_pred EEEEeCcHHHHHHHHHHHhh----c-CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccccc-cCCCCccE
Q 004808 373 VIIFSGTKQAAHRLKILFGL----A-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARG-LDIIGVQT 441 (729)
Q Consensus 373 vLIF~~s~~~~~~l~~~L~~----~-~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~ 441 (729)
+||++||++.+.++.+.+.. . ++.++.++|+++...+...+.. | .+|||+|+ .+.+| +++..|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999998777653 2 5778999999998877755544 6 99999996 45566 89999999
Q ss_pred EEE
Q 004808 442 VIN 444 (729)
Q Consensus 442 VI~ 444 (729)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 398
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=88.67 E-value=2.6 Score=47.71 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=82.3
Q ss_pred CCcHHHHHHHHHHhc------C----CCEEEEcCCCchhhHHhh-hhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 004808 147 KPTPIQAACIPLALT------G----RDICGSAITGSGKTAAFA-LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~------g----~dvlv~a~TGsGKT~a~~-lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~ 215 (729)
.+-|+|.-++-.++. | +..++..|-+-|||.... |.+...++.. ..+-.+.|++|+.+-+.+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhHH
Confidence 467999999988883 1 357889999999996544 3222333322 2445799999999999998888
Q ss_pred HHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchH---HHHHHh-ccCccCCCCeeEEEEeCcchhhcCChHHH
Q 004808 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR---MIDHLR-NSMSVDLDDLAVLILDEADRLLELGFSAE 291 (729)
Q Consensus 216 ~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~---L~~~l~-~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (729)
++....... .. ........+.+..+... .+..+. +....+-.+..+.|+||.|..-..+ ..
T Consensus 138 ar~mv~~~~-~l------------~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 138 ARDMVKRDD-DL------------RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHHhCc-ch------------hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 876554322 00 00011111111121111 111111 2223344566799999999876542 33
Q ss_pred HHHHHHhc--CcCceEEEEec
Q 004808 292 IHELVRLC--PKRRQTMLFSA 310 (729)
Q Consensus 292 i~~il~~~--~~~~q~il~SA 310 (729)
+..+..-+ .++.+++..|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 44443332 24566666665
No 399
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.65 E-value=0.59 Score=48.89 Aligned_cols=43 Identities=30% Similarity=0.285 Sum_probs=29.2
Q ss_pred hcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
..+.+++++|+||||||... -.++..+-.. ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-----ccceEEeccccce
Confidence 34678999999999999763 4445443222 2367888877777
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=7 Score=40.91 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=69.0
Q ss_pred HHHHhcCC-----CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEE
Q 004808 156 IPLALTGR-----DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230 (729)
Q Consensus 156 i~~ll~g~-----dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~ 230 (729)
+|.++.|+ .+|+.+|+|+||+..+ -++.. .. + -..+-+.+..|+..|.-.-.+|..
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVAT---EA---n--STFFSvSSSDLvSKWmGESEkLVk--------- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVAT---EA---N--STFFSVSSSDLVSKWMGESEKLVK--------- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHh---hc---C--CceEEeehHHHHHHHhccHHHHHH---------
Confidence 47788874 5899999999999642 22211 00 1 256777778887666444443321
Q ss_pred ecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCC------hHHHH-HHHHHhc----
Q 004808 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG------FSAEI-HELVRLC---- 299 (729)
Q Consensus 231 ~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g------f~~~i-~~il~~~---- 299 (729)
.|..+.+. +.-++|.|||+|.|.... -...| .+++-+.
T Consensus 216 -------------------------nLFemARe------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 216 -------------------------NLFEMARE------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred -------------------------HHHHHHHh------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 01111122 234579999999776321 11112 2222222
Q ss_pred CcCceEEEEecccchhHHH-HHHHhcCCCeEE
Q 004808 300 PKRRQTMLFSATLTEDVDE-LIKLSLTKPLRL 330 (729)
Q Consensus 300 ~~~~q~il~SATl~~~v~~-l~~~~l~~p~~i 330 (729)
...--++++.||-.|.+.+ .++.-+.+.+.+
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 2344689999998777554 344555554444
No 401
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.61 E-value=0.94 Score=49.65 Aligned_cols=27 Identities=22% Similarity=-0.002 Sum_probs=19.5
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
+..++++||||||||.. +-.++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999975 3445555543
No 402
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.60 E-value=1.1 Score=48.47 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=28.3
Q ss_pred hcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
..+.+++++|+||||||.. +-.++..+- ...+++++=-+.||.
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIP------AIERLITVEDAREIV 200 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCC------CCCeEEEecCCCccc
Confidence 3578999999999999974 333444331 123577766666663
No 403
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.56 E-value=0.28 Score=47.72 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHhcCCCeEEECchHHHHHHhccCcc-CCCCeeEEEEeCcchhhc
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLE 285 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll~ 285 (729)
.....+||||+++..|++-....... ....-.+|||||||.|.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34456899999999887764332111 123446999999999865
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.54 E-value=2.4 Score=43.08 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
|..+++.|++|+|||......+.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~ 44 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKG 44 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHH
Confidence 5678899999999997543333333
No 405
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=2.3 Score=48.50 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=32.0
Q ss_pred CeeEEEEeCcchhhc-------CChHHHHHHHHHhc---CcCceEEEEecccchhHHH
Q 004808 271 DLAVLILDEADRLLE-------LGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDE 318 (729)
Q Consensus 271 ~i~~lVvDEah~ll~-------~gf~~~i~~il~~~---~~~~q~il~SATl~~~v~~ 318 (729)
.-.+|.+||.|.|.. +.-...+.+++..+ ...+++.++.||-.|++.+
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 445889999999862 22334445555443 3567788999998887653
No 406
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.51 E-value=0.95 Score=47.29 Aligned_cols=44 Identities=32% Similarity=0.342 Sum_probs=28.1
Q ss_pred HHHcCCCCCcHHHHHHHHHHhc-C-CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 140 CEALGYSKPTPIQAACIPLALT-G-RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 140 l~~~g~~~pt~iQ~~~i~~ll~-g-~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
+..+|| .+-|.+.+..++. . .-++++|+||||||... -.++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 445554 4556666655554 3 35789999999999753 4455554
No 407
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.34 E-value=0.94 Score=49.49 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.+.-++++||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4567889999999999752 3344444
No 408
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.34 E-value=1.5 Score=45.08 Aligned_cols=96 Identities=10% Similarity=0.138 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC----ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcc
Q 004808 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH----VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (729)
Q Consensus 385 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~----~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGR 460 (729)
.|...+.. ++.+..++++.+... -.|.++. ..|+|+=+.++||+.++|..+..+..-+.+..++.||.=-
T Consensus 102 ~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRw 175 (239)
T PF10593_consen 102 ELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRW 175 (239)
T ss_pred HHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhc
Confidence 33444444 577777876554432 2333433 7899999999999999999999999999988888887322
Q ss_pred c-ccCCCccEEEEEeccCcHHHHHHHH
Q 004808 461 T-ARAGREGYAVTFVTDNDRSLLKAIA 486 (729)
Q Consensus 461 a-gR~G~~G~~i~l~~~~d~~~l~~i~ 486 (729)
. .|.|-.+.|.+|.++.-...+..|.
T Consensus 176 FGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 176 FGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ccCCcccccceEEecCHHHHHHHHHHH
Confidence 2 3566677888888765555555444
No 409
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.28 E-value=1.7 Score=51.46 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=36.9
Q ss_pred eEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
=++|+|..|.+.+......+..+++..|.+...++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999998888999999999999999999987754
No 410
>PRK10689 transcription-repair coupling factor; Provisional
Probab=88.28 E-value=2.1 Score=53.78 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-cccccCCCCccEEE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVI 443 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-~~rGlDi~~v~~VI 443 (729)
.+.+++|.+||...+.++...|.. .++.+..++|..+..++..++..+.+|..+|||+|.. +...+.+..+.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 367899999999999888776653 3567888999999999999999999999999999964 44556777888888
Q ss_pred E
Q 004808 444 N 444 (729)
Q Consensus 444 ~ 444 (729)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 411
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.23 E-value=1.6 Score=46.64 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=27.9
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
..+|++||.|+|||..+-+.+ ...+....+.+=+.-|..-...+...+.
T Consensus 163 pSmIlWGppG~GKTtlArlia------~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIA------STSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHH------hhcCCCceEEEEEeccccchHHHHHHHH
Confidence 479999999999997432211 1112223455666666555444444444
No 412
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.20 E-value=0.55 Score=47.69 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=14.3
Q ss_pred EEEEcCCCchhhHHhhhhhh
Q 004808 165 ICGSAITGSGKTAAFALPTL 184 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil 184 (729)
++|.|+.|||||.. +.-++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47899999999975 34444
No 413
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.09 E-value=2.9 Score=46.84 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred hcCCCEEEEcCCCchhhHHhhhhhhHHHh-cCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEE-ecCCChH
Q 004808 160 LTGRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTK 237 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a~~lpil~~l~-~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~-~gg~~~~ 237 (729)
..|.=+++.|+||+|||... +-+..++. .. +..|++++. -.-..|+...+.. ...++....+ .|..+..
T Consensus 192 ~~g~liviag~pg~GKT~~a-l~ia~~~a~~~-----g~~v~~fSl-Em~~~~l~~Rl~~--~~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLA-LNIAENVALRE-----GKPVLFFSL-EMSAEQLGERLLA--SKSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCCceEEEEeCCCCCHHHHH-HHHHHHHHHhC-----CCcEEEEEC-CCCHHHHHHHHHH--HHcCCCHHHHhcCCCCHH
Confidence 34566779999999999654 44443332 22 224777752 2223344333322 1223332222 2332222
Q ss_pred HHHHHH------hcCCCeEEEC-----chHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 238 MQETAL------RSMPDIVVAT-----PGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 238 ~~~~~l------~~~~dIvI~T-----P~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
. +..+ .....+.|.. +..+...+... ......+++||||=.+.|..
T Consensus 263 ~-~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~-~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 263 D-FNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRI-KRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred H-HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH-HHhcCCCCEEEEecccccCC
Confidence 2 2111 1123455543 33333333321 01112578999999888753
No 414
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.90 E-value=2.9 Score=42.70 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
|.-+++.|++|+|||...+..+.+.+. + +.+++++.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-----g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-Q-----GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-C-----CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 456779999999999765444444332 2 2346665543 3334555555543
No 415
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.87 E-value=5.7 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=17.9
Q ss_pred CCCCCCCCcccccchhHHHHhhhcc
Q 004808 675 NGKKSKHSSQESNSRAKEMRELFHS 699 (729)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (729)
-.++.|.+.++.+.--+++.+||..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (486)
T PRK14953 449 EVKKEKEKEKERPEFVEKVLELFKG 473 (486)
T ss_pred hhhhcccccccCCHHHHHHHHhccc
Confidence 4455566666677788889999974
No 416
>PRK06904 replicative DNA helicase; Validated
Probab=87.85 E-value=3.9 Score=46.49 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEE-ec-CCChHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VG-GLSTKMQ 239 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~-~g-g~~~~~~ 239 (729)
|.=+|+.|.||.|||... +-+..++.... +..|+|++.- .-..|+...+... ..++....+ .| ..+....
T Consensus 221 G~LiiIaarPg~GKTafa-lnia~~~a~~~----g~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFA-MNLCENAAMAS----EKPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHHhc----CCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccCCCCCHHHH
Confidence 445668999999999743 44443332211 2236666442 3345555544432 223332222 23 2333222
Q ss_pred H------HHHhcCCCeEEE-----CchHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 240 E------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 240 ~------~~l~~~~dIvI~-----TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
. ..+...+.+.|. |+..+...++... .....+++||||=.+.|..
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 1 122233446553 4444444333210 1113578999998887753
No 417
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=87.75 E-value=0.96 Score=47.33 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=25.1
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCC-CCCCCcEEEEEcCcHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTRELA 209 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~-~~~~~~~vLIl~PtreLa 209 (729)
.+|.|||||||+-. |..|+... -...+-.|++|+|+....
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 45899999999953 23333221 112344699999998543
No 418
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.62 E-value=2 Score=50.81 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
.....++||||||.|.... ...+...+...|.... ++|.+|
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~ti-fILaTt 156 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVI-FILATT 156 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceE-EEEEcC
Confidence 4677899999999886432 3334444555444443 334334
No 419
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.44 E-value=9.7 Score=43.27 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=66.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-cccCCCCc
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIGV 439 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~-rGlDi~~v 439 (729)
+..+||.+||++.+.++...+... ++.+.+++|+.+...+.+.++ ..++|+|+|. .+. --+++..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 456999999999999998777654 456889999999887766664 3478999996 333 34788899
Q ss_pred cEEEE--------eCCCCChhhHHHHhccccc
Q 004808 440 QTVIN--------YACPRDLTSYVHRVGRTAR 463 (729)
Q Consensus 440 ~~VI~--------~d~P~s~~~yiQriGRagR 463 (729)
.+||. .++-..+...++.++|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99883 2233356677777777766
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.39 E-value=1.1 Score=44.12 Aligned_cols=32 Identities=44% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHH
Q 004808 147 KPTPIQAACIPLALT-GRDICGSAITGSGKTAA 178 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a 178 (729)
.+++-|...+..++. |..++++|+||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 356777777766665 67889999999999975
No 421
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.32 E-value=1.8 Score=48.93 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEE
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il 307 (729)
.....+|||||+|.|.... .+.+..++...+....+|+
T Consensus 119 ~~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred cCCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 3567899999999986432 3344445555444443333
No 422
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.26 E-value=2.1 Score=47.71 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=53.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH---hc-CCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL---RS-MPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
.|.++|.+.|..-|..++..|.+ .+++++.++||.+.......| +. ..+|+|||. ... .+++..+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK----~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vAg--RGIDIpn 585 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEK----AGYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VAG--RGIDIPN 585 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhh----ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----ccc--cCCCCCc
Confidence 45689999999998888777776 479999999999887766554 33 579999994 222 3677788
Q ss_pred eeEEE
Q 004808 272 LAVLI 276 (729)
Q Consensus 272 i~~lV 276 (729)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 87765
No 423
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.25 E-value=1.8 Score=42.08 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=43.1
Q ss_pred CCCeeEEEEeCcchhhcCChH--HHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 269 LDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~--~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
-..+++||+||+-..++.|+. ..+..+++..|...-+|+..-.+|+.+.+.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 357889999999999988864 66778888888888888888888888876653
No 424
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.12 E-value=0.71 Score=52.49 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=36.9
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
.++++.|+||||||..+++|.+-. .+. -+||+=|--+|+......+..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~~-----s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YPG-----SMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---ccC-----CEEEEECCCcHHHHHHHHHHH
Confidence 479999999999999999887632 211 389999999997766655554
No 425
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.11 E-value=2.8 Score=43.66 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
|.-+++.|++|+|||...+..+.+.+. . +.+++++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-~-----Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-R-----GNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-C-----CCcEEEEE
Confidence 566889999999999754433443332 2 22467766
No 426
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.04 E-value=1.1 Score=44.31 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=12.0
Q ss_pred EEEEcCCCchhhHHhhhh
Q 004808 165 ICGSAITGSGKTAAFALP 182 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lp 182 (729)
.+++|.+|||||+-.+.-
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 468999999999755444
No 427
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=2.6 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.6
Q ss_pred HHHhcC-----CCEEEEcCCCchhhHH
Q 004808 157 PLALTG-----RDICGSAITGSGKTAA 178 (729)
Q Consensus 157 ~~ll~g-----~dvlv~a~TGsGKT~a 178 (729)
|-++.| +.+|..||+|+|||+.
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHH
Confidence 445555 6899999999999974
No 428
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=86.79 E-value=0.69 Score=53.08 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll----~g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
+|+.||...+..+. .|+=.|+..|||+|||+..+-.++..|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 58899988776554 589889999999999987655555443
No 429
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=86.78 E-value=0.42 Score=60.40 Aligned_cols=94 Identities=27% Similarity=0.343 Sum_probs=70.8
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcC-CceeeccCCCC-----------HHHHHHHHHHHhcCCceEEEEcCccccccCCCCc
Q 004808 372 KVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLT-----------QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (729)
Q Consensus 372 ~vLIF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~~-----------~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v 439 (729)
..|+||.....+..+...+.... ..+..+.|.+. ...+.+++..|.....++|++|.++.+|+|++-+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45788887766666655554331 12222333221 1236788899999999999999999999999999
Q ss_pred cEEEEeCCCCChhhHHHHhcccccCC
Q 004808 440 QTVINYACPRDLTSYVHRVGRTARAG 465 (729)
Q Consensus 440 ~~VI~~d~P~s~~~yiQriGRagR~G 465 (729)
+.|+.++.|.....|+|..||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999976543
No 430
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.74 E-value=4.5 Score=46.98 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
.....++||||+|.|.... .+.+...+...| ..-+++|.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp-~~~vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPP-PYIVFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCC-CCEEEEEecC
Confidence 4677899999999986432 233334444333 3334444444
No 431
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.71 E-value=0.93 Score=48.58 Aligned_cols=57 Identities=33% Similarity=0.375 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHHHHh-cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 145 YSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll-~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
+..+++.|..-+-.++ .+++++++|+||||||.. +.+++..+ .+..+++.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I------p~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI------PPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC------CchhcEEEEeccccc
Confidence 4457777766655544 578999999999999975 45555443 223457777777766
No 432
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.68 E-value=2.2 Score=47.26 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+.+|+.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 433
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.60 E-value=7 Score=42.23 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=26.2
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
....+++||||||.|... -.+.+...++..|....+|+.|
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEe
Confidence 457789999999998643 2445556666655555555543
No 434
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.51 E-value=3.5 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=17.0
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 164 DICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.+|+.||.|+|||.+. ..+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhc
Confidence 4789999999999753 44444443
No 435
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.45 E-value=2 Score=45.72 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
.+++++||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999975
No 436
>PRK09087 hypothetical protein; Validated
Probab=86.43 E-value=1.7 Score=44.32 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=25.6
Q ss_pred EEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc-cchh
Q 004808 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT-LTED 315 (729)
Q Consensus 274 ~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT-l~~~ 315 (729)
+|+||++|.+. .-...+..+++.+......++++++ .++.
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 79999999763 2356677777777654444555555 4443
No 437
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.43 E-value=8.7 Score=42.07 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=57.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
.+.+.+.|+.|.|||.. +-++...+.... ..+ ++.-+.+..++..+..+. |+...-
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~---k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l---- 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR---KRR----VHFHEFMLDVHSRLHQLR-----------GQDDPL---- 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc---ccc----ccccHHHHHHHHHHHHHh-----------CCCccH----
Confidence 46789999999999974 333322221111 111 244577778888877653 111110
Q ss_pred HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHh-cCcCceEEEEecccchhH
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL-CPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~-~~~~~q~il~SATl~~~v 316 (729)
..+.+.+ .....+|.+||.|.- +.+-.--+..++.. +....-+|..|-+.|.++
T Consensus 118 -------------~~va~~l-------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 118 -------------PQVADEL-------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -------------HHHHHHH-------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0111222 223458999999953 22212222223322 345666777777777554
No 438
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=86.41 E-value=6.1 Score=42.68 Aligned_cols=143 Identities=22% Similarity=0.117 Sum_probs=60.0
Q ss_pred EEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH-HHHHHHH---HHHHHhhccCceEEEE--ecCCChHHH
Q 004808 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHS---MIEKIAQFTDIRCCLV--VGGLSTKMQ 239 (729)
Q Consensus 166 lv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre-La~Q~~~---~~~~l~~~~~i~v~~~--~gg~~~~~~ 239 (729)
|+.++.|+|||.+.++.++..++..+. ...++++ ||.. +...+.. .+..+... .+.+... ....-.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII--- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE---
Confidence 578899999999877777777766543 2345555 5554 4443222 22222221 1222111 111000
Q ss_pred HHHHhcCCCeEEECchH--HHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc--hh
Q 004808 240 ETALRSMPDIVVATPGR--MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT--ED 315 (729)
Q Consensus 240 ~~~l~~~~dIvI~TP~~--L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~--~~ 315 (729)
+.++..|.+.+-.. -..-+. -..+.+||+||+-.+.+..+...+...+..... ...+++|.|.. ..
T Consensus 73 ---~~nG~~i~~~~~~~~~~~~~~~------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 73 ---LPNGSRIQFRGADSPDSGDNIR------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGW 142 (384)
T ss_dssp ---ETTS-EEEEES-----SHHHHH------TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred ---ecCceEEEEecccccccccccc------ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCc
Confidence 12344455555221 011111 145669999998887544333333333222222 22225555443 33
Q ss_pred HHHHHHHhcCC
Q 004808 316 VDELIKLSLTK 326 (729)
Q Consensus 316 v~~l~~~~l~~ 326 (729)
+..+.......
T Consensus 143 ~~~~~~~~~~~ 153 (384)
T PF03237_consen 143 FYEIFQRNLDD 153 (384)
T ss_dssp HHHHHHHHHCT
T ss_pred eeeeeehhhcC
Confidence 44444444444
No 439
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=86.40 E-value=1.5 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=19.9
Q ss_pred HHHHHhcCCCEEEEcCCCchhhHH
Q 004808 155 CIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 155 ~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
++-.+..++++++.|++|+|||..
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHH
Confidence 445556689999999999999975
No 440
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.12 E-value=4.8 Score=44.90 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=61.8
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-------cccccC
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-------AARGLD 435 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-------~~rGlD 435 (729)
..+..+|||.|||++.+..+...... ..+.++..-|+++-..+..++. ...+|+|||+- -+.+++
T Consensus 249 ~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ 324 (691)
T KOG0338|consen 249 KVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFN 324 (691)
T ss_pred cCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcc
Confidence 34457899999999988877665543 3688999999999988887775 45689999972 257888
Q ss_pred CCCccEEEEeCCCCChhh
Q 004808 436 IIGVQTVINYACPRDLTS 453 (729)
Q Consensus 436 i~~v~~VI~~d~P~s~~~ 453 (729)
+.++.++|.-....-...
T Consensus 325 ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 325 LDSIEVLVLDEADRMLEE 342 (691)
T ss_pred ccceeEEEechHHHHHHH
Confidence 888888886554443333
No 441
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.05 E-value=2.8 Score=47.35 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
|.-+++.|++|+|||... +-+...+... +.++|++.- .+...|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~~-----g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAAA-----GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHhc-----CCeEEEEEc-cccHHHHHHHHHHc
Confidence 456779999999999754 3333333221 235777764 45556766655554
No 442
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.01 E-value=1.6 Score=51.27 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
+...+++||||||.|.... .+.+..++...|... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4678899999999986432 334555555544433 4455555
No 443
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=85.97 E-value=3.2 Score=48.17 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=67.4
Q ss_pred CCCeEEEEeCcH----HHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-ccccCCCCccEEE
Q 004808 369 FTSKVIIFSGTK----QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (729)
Q Consensus 369 ~~~~vLIF~~s~----~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~-~rGlDi~~v~~VI 443 (729)
.+..+.+-.||. +.+..+..+|...|+.+..+.|.+....|..+++...+|.++|+|.|-++ ...+++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 356888999985 55566778888889999999999999999999999999999999999876 5788888998888
Q ss_pred EeC
Q 004808 444 NYA 446 (729)
Q Consensus 444 ~~d 446 (729)
.-.
T Consensus 390 iDE 392 (677)
T COG1200 390 IDE 392 (677)
T ss_pred Eec
Confidence 543
No 444
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.97 E-value=3.9 Score=43.84 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=25.1
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
....+++|||+||.|.... .+.+...+...|...-+| |.++
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~i-l~~~ 131 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFII-LLCE 131 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEE-EEeC
Confidence 4578899999999986432 344555555544444444 4444
No 445
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=85.95 E-value=21 Score=38.53 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=108.6
Q ss_pred CchhhHHhhhhhhHHHhcCCC---------CCCCc-EEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 172 GSGKTAAFALPTLERLLYRPK---------RIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 172 GsGKT~a~~lpil~~l~~~~~---------~~~~~-~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
|+|||=. .+.++..+...+. +.... ..+++.|.. -+.++-++---++...+ +.+++|......-..
T Consensus 47 GTGKTP~-v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~V~~dR~~~~~~ 122 (326)
T PF02606_consen 47 GTGKTPL-VIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP--VPVIVGPDRVAAARA 122 (326)
T ss_pred CCCchHH-HHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEEEeCcHHHHHHH
Confidence 8999954 3445555443321 11111 256667766 66677776666666655 555666655544444
Q ss_pred HHhc-CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh-----hcCChHHHHHHHHHhcCcCceEEEEecccchh
Q 004808 242 ALRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-----LELGFSAEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 242 ~l~~-~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l-----l~~gf~~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
.+.. .++|||.-.|. ++. ..-.++++|++|-.+-+ +..|...+...- +. ..-+++++......
T Consensus 123 ~~~~~~~dviilDDGf-----Qh~--~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~---l~-rAD~vi~~~~~~~~ 191 (326)
T PF02606_consen 123 ALKEFPADVIILDDGF-----QHR--RLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSA---LK-RADAVIVTGCDASD 191 (326)
T ss_pred HHHHCCCCEEEEcCCc-----ccc--cccCCcEEEEEeCCCCCcCCccCCCCcccCChhH---hC-cccEEEEcCCCcch
Confidence 4443 48999987553 221 12367889999975432 223322222111 11 12345555443332
Q ss_pred HHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCC
Q 004808 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 395 (729)
Q Consensus 316 v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~ 395 (729)
...........|+..... ....+....... .....+.++++||. ...-+.+...|...|+
T Consensus 192 ~~~~~~~~~~~p~~~~~~-----------~~~~~~~~~~~~--------~~~l~~~~v~a~sG-Ig~P~~F~~~L~~~G~ 251 (326)
T PF02606_consen 192 PAIEKAIRPGKPIFSARL-----------KPEGLRNLNTGS--------IEPLKGKPVLAFSG-IGNPERFFDTLESLGI 251 (326)
T ss_pred hHHHHhhhcCCceEEEEE-----------Eecccccccccc--------hhhccCCeeEEEEE-cCChHHHHHHHHHcCC
Confidence 221111112222211100 000000000000 01134567888874 3334456666766776
Q ss_pred ceee-----ccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 004808 396 KAAE-----LHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (729)
Q Consensus 396 ~~~~-----lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~ 429 (729)
.+.. =|-..+..+-..+....+... +||+|.-
T Consensus 252 ~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTeK 288 (326)
T PF02606_consen 252 EVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTEK 288 (326)
T ss_pred eEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecHH
Confidence 5542 255667777777776665544 8999963
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.71 E-value=8 Score=40.49 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred HHHHHhcC---CCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 155 CIPLALTG---RDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 155 ~i~~ll~g---~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.++.+... +++++.++||+|||+. +-++..++
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~~ 135 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARIL 135 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCcc
Confidence 34555543 5789999999999974 44444433
No 447
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=85.65 E-value=2 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=19.1
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.|+-+++.||+|+|||... ..+...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 4788999999999999752 3344443
No 448
>PRK14701 reverse gyrase; Provisional
Probab=85.54 E-value=3.5 Score=53.61 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~ 429 (729)
.+.++||.+||+..+.++...|... ++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999998888877652 467788999999999999999999999999999974
No 449
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=6.4 Score=45.91 Aligned_cols=94 Identities=21% Similarity=0.409 Sum_probs=56.6
Q ss_pred CcHHHHHHHHHHh--------cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 148 PTPIQAACIPLAL--------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 148 pt~iQ~~~i~~ll--------~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
+..+-.+++..+. .|+=+|+.||+|-|||-+. ..+++.+.+
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~------------------------------kSIA~ALnR- 464 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA------------------------------KSIARALNR- 464 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH------------------------------HHHHHHhCC-
Confidence 3455566666553 2566889999999999642 111222221
Q ss_pred hhccCceEEEEecCCChHHHHHHHhcCC-CeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 220 AQFTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 220 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~-dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
.| +.+-+||..+..... +.. ..|=+-||++++.|..-..-+ -++.|||+|.+-
T Consensus 465 -kF----fRfSvGG~tDvAeIk---GHRRTYVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG 518 (906)
T KOG2004|consen 465 -KF----FRFSVGGMTDVAEIK---GHRRTYVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLG 518 (906)
T ss_pred -ce----EEEeccccccHHhhc---ccceeeeccCChHHHHHHHhhCCCC----ceEEeehhhhhC
Confidence 11 234467777654433 332 245567999999997532111 179999999987
No 450
>PRK04328 hypothetical protein; Provisional
Probab=85.35 E-value=5.6 Score=41.11 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=30.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
|.-+++.|++|+|||...+..+.+.+. .. ..++++. +-+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~-~g-----e~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-MG-----EPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-cC-----CcEEEEE-eeCCHHHHHHHHHHc
Confidence 567889999999999764444444432 22 2355554 444555566655554
No 451
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.27 E-value=3.2 Score=50.32 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45688999999999975
No 452
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=85.18 E-value=2.3 Score=48.33 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=29.3
Q ss_pred EECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc
Q 004808 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (729)
Q Consensus 251 I~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~ 299 (729)
+-+||-...+-.. .+....-.+.|+|||-.-+..+....+-.+++..
T Consensus 570 vLS~GEqQRLa~A--RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 570 VLSPGEQQRLAFA--RLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred hcCHHHHHHHHHH--HHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 4466654443222 2234566789999999888766666666666554
No 453
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.04 E-value=7.1 Score=43.57 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=53.0
Q ss_pred eEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc------cccccCCCCccE
Q 004808 372 KVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGVQT 441 (729)
Q Consensus 372 ~vLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~------~~rGlDi~~v~~ 441 (729)
=.||.|+|+..+..+....+ ..|+++..+||+.+.-++...++ -..-|+|||.- --.++|+..|.+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 35677999999988865544 45899999999999988877775 35679999961 236788888888
Q ss_pred EEE
Q 004808 442 VIN 444 (729)
Q Consensus 442 VI~ 444 (729)
+|+
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 774
No 454
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.99 E-value=1.7 Score=51.54 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=63.1
Q ss_pred hHHHHHHHHhhcc--CCCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccc
Q 004808 356 NQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (729)
Q Consensus 356 ~k~~~l~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~r 432 (729)
.+..+++.++... .+..+||.+|......++...|.. .|.++..+|++++..+|.....+..+|+.+|+|.|..+--
T Consensus 229 GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF 308 (730)
T COG1198 229 GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF 308 (730)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc
Confidence 3444444444322 256899999987776666666543 3689999999999999999999999999999999976421
Q ss_pred ccCCCCccEEE
Q 004808 433 GLDIIGVQTVI 443 (729)
Q Consensus 433 GlDi~~v~~VI 443 (729)
+-+++...||
T Consensus 309 -~Pf~~LGLII 318 (730)
T COG1198 309 -LPFKNLGLII 318 (730)
T ss_pred -CchhhccEEE
Confidence 2344555555
No 455
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.86 E-value=2 Score=46.71 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=25.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
+..++++||||||||... -.++..+... ...+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~----~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN----AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC----CCCEEEEEcCChhh
Confidence 567889999999999763 3344443221 12356666554554
No 456
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.75 E-value=4.2 Score=44.67 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
|.-+++.|++|+|||... +-+...+... +.+++++.-. +...|+...+..+
T Consensus 82 GslvLI~G~pG~GKStLl-lq~a~~~a~~-----g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLL-LQVAARLAKR-----GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHH-HHHHHHHHhc-----CCeEEEEECC-cCHHHHHHHHHHc
Confidence 456779999999999764 3333333222 2357777653 3445665555443
No 457
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.61 E-value=1.4 Score=51.46 Aligned_cols=57 Identities=23% Similarity=0.126 Sum_probs=43.1
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEe
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~ 231 (729)
.++++.||||||||..+++|.|-.. + .-+||+=|--|+........++ .|.+|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---~-----~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---E-----DSVVVHDIKLENYELTSGWREK----QGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---C-----CCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEe
Confidence 5799999999999999999987542 1 2389999999998777666654 355555543
No 458
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=84.56 E-value=2.5 Score=47.42 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=47.5
Q ss_pred CeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 004808 371 SKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (729)
Q Consensus 371 ~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 428 (729)
.-.|||+||++.++.+.+.|.. .++.+..|.|+|....+.+++.. .-+|+|||+
T Consensus 264 ~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 264 PIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred ceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3489999999999999999864 48999999999999999999876 667999996
No 459
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=84.33 E-value=0.89 Score=55.16 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.7
Q ss_pred hhhhhhhhh
Q 004808 65 VDFKITKSL 73 (729)
Q Consensus 65 ~~~~~~~~~ 73 (729)
+..++.+++
T Consensus 704 ~~~~l~~aL 712 (784)
T PF04931_consen 704 FRSALAKAL 712 (784)
T ss_pred HHHHHHHHh
Confidence 333444444
No 460
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.25 E-value=5.6 Score=46.47 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=55.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||.|+|+..|.++++.|.. .++.+..++|+.+.......+ .+..+|||||. .+.. .+++..
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCccC
Confidence 34699999999999999888865 378899999998876554433 24579999993 3444 678888
Q ss_pred eeEEEEeC
Q 004808 272 LAVLILDE 279 (729)
Q Consensus 272 i~~lVvDE 279 (729)
+.+||.-.
T Consensus 326 V~~VInyd 333 (572)
T PRK04537 326 VKYVYNYD 333 (572)
T ss_pred CCEEEEcC
Confidence 88887644
No 461
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.12 E-value=19 Score=35.39 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c-ccccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 438 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~-~rGlDi~~ 438 (729)
.+.++||.+++...+......+.. .++.+..++|+.+.......+. +...|+|+|.- + ..-+++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999988877655543 4778889999988766544432 67789999952 2 22356778
Q ss_pred ccEEEEeC
Q 004808 439 VQTVINYA 446 (729)
Q Consensus 439 v~~VI~~d 446 (729)
+.+||.=+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88887543
No 462
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=84.09 E-value=1.8 Score=44.88 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
-++++.||+|.|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 36899999999999753
No 463
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.07 E-value=5.5 Score=48.88 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
.++|+.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 68999999999999764
No 464
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=83.94 E-value=3.8 Score=42.90 Aligned_cols=115 Identities=24% Similarity=0.235 Sum_probs=60.8
Q ss_pred HHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCCh
Q 004808 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236 (729)
Q Consensus 157 ~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~ 236 (729)
|.-..|+-+++.+..|.|||.+. .+.. ...|.++++-|...-.. ...+..++.
T Consensus 89 ~A~k~g~l~~vyg~~g~gKt~a~----~~y~------~s~p~~~l~~~~p~~~a--~~~i~~i~~--------------- 141 (297)
T COG2842 89 PASKTGSLVVVYGYAGLGKTQAA----KNYA------PSNPNALLIEADPSYTA--LVLILIICA--------------- 141 (297)
T ss_pred hhhhcCceEEEeccccchhHHHH----Hhhc------ccCccceeecCChhhHH--HHHHHHHHH---------------
Confidence 44456777789999999999873 2221 12345677666653321 111111111
Q ss_pred HHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccc
Q 004808 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (729)
Q Consensus 237 ~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~ 313 (729)
+..++|.+.+.+...+.........+++|+|||++|. ...+..+....-+..+.+.+..++.
T Consensus 142 -----------~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~----~~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 142 -----------AAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLP----YRALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred -----------HHhcccchhHHHHHHHHHHHHccCcceeeeehhhccC----hHHHHHHHHHHHhhCceEEEecChH
Confidence 1222333333332222111124567799999999984 4444555444445556677777653
No 465
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=83.85 E-value=3.8 Score=44.29 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=34.0
Q ss_pred eeEEEEeCcchhhcCC--hHHHHHHHHHhcCcCceEEEEecccchhH
Q 004808 272 LAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (729)
Q Consensus 272 i~~lVvDEah~ll~~g--f~~~i~~il~~~~~~~q~il~SATl~~~v 316 (729)
--+||+|-||.+-+++ ....+..+...++.+.-.|+||+++.+..
T Consensus 116 ~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 116 KVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred eEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 3489999999998876 34555666666777766789999988754
No 466
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=83.82 E-value=3.8 Score=48.38 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=51.9
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cccc-ccCCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAAR-GLDIIG 438 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~r-GlDi~~ 438 (729)
...+||.|||+..+.+++..|... ++.+..+||+.+...+...+ .....|||+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999998887765432 78889999998776655444 24578999995 3333 467888
Q ss_pred ccEEEE
Q 004808 439 VQTVIN 444 (729)
Q Consensus 439 v~~VI~ 444 (729)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888773
No 467
>PF12846 AAA_10: AAA-like domain
Probab=83.56 E-value=2.8 Score=43.98 Aligned_cols=43 Identities=33% Similarity=0.398 Sum_probs=30.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
+.++++.|+||||||.... .++..++... ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g-----~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG-----PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC-----CCEEEEcCCchHHH
Confidence 3679999999999997754 5555554433 35888888766644
No 468
>PRK05973 replicative DNA helicase; Provisional
Probab=83.48 E-value=1.5 Score=44.87 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHcCCCC----------CcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEE
Q 004808 131 NLSRPLLRACEALGYSK----------PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (729)
Q Consensus 131 ~l~~~l~~~l~~~g~~~----------pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vL 200 (729)
+|+..+-+....-||.. +||... ++--+..|.-+++.|++|+|||+..+..+.+.+ .. +.+++
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~-----Ge~vl 96 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KS-----GRTGV 96 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hc-----CCeEE
Confidence 34444444445556654 344222 222334456788999999999976544444443 22 22466
Q ss_pred EEcCcHHHHHHHHHHHHHH
Q 004808 201 ILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 201 Il~PtreLa~Q~~~~~~~l 219 (729)
+++- -+-..|+.+.+..+
T Consensus 97 yfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 97 FFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred EEEE-eCCHHHHHHHHHHc
Confidence 6643 23345666666654
No 469
>PRK08506 replicative DNA helicase; Provisional
Probab=83.47 E-value=3.9 Score=46.52 Aligned_cols=112 Identities=19% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEE-ecCCChHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 240 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~-~gg~~~~~~~ 240 (729)
|.=+++.|.||.|||... +-+..++... +..|++++. -.-..|+...+... ..++...-+ .|..+.....
T Consensus 192 G~LivIaarpg~GKT~fa-l~ia~~~~~~-----g~~V~~fSl-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLC-LNMALKALNQ-----DKGVAFFSL-EMPAEQLMLRMLSA--KTSIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CceEEEEcCCCCChHHHH-HHHHHHHHhc-----CCcEEEEeC-cCCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHH
Confidence 445678999999999654 4444444322 223666643 23345555544332 123322222 2333322221
Q ss_pred ------HHHhcCCCeEEE-----CchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 241 ------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 241 ------~~l~~~~dIvI~-----TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
..+.. ..+.|- |+..+...++... .....+.+||||=.+.|.
T Consensus 263 ~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~-~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLK-SQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEcChhhcc
Confidence 11222 234443 3444444443211 012357899999998775
No 470
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=83.33 E-value=9.9 Score=43.83 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh-hccCce-EEEEecCCChHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIR-CCLVVGGLSTKMQ 239 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~-~~~~i~-v~~~~gg~~~~~~ 239 (729)
.+-.++.-|---|||.. +.|++..++.. ..+.++.+++.-+..+.-++.++..-+ ++.+-+ +...-+
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s---~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKN---IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD------- 270 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHh---hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-------
Confidence 35677788899999975 68888888764 446689999999988887776664332 222221 211111
Q ss_pred HHHHhcCCCeEEECchHH----HHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcC-cCceEEEEecccc
Q 004808 240 ETALRSMPDIVVATPGRM----IDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTMLFSATLT 313 (729)
Q Consensus 240 ~~~l~~~~dIvI~TP~~L----~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~-~~~q~il~SATl~ 313 (729)
-.|.+.-||.= ..-..+..++.-..+.+++|||||-+- .+.+..|+-.+. +..++|..|.|-+
T Consensus 271 -------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 271 -------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred -------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCC
Confidence 12444433321 111123335556778899999999764 334445554443 5778899998864
No 471
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.32 E-value=11 Score=41.66 Aligned_cols=130 Identities=20% Similarity=0.208 Sum_probs=75.4
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc-C-cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-P-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~-P-treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
++.+|--|||||++. --+ ..++.. . +.++++++ - .|..| +++++.++...++.+.....+.++..-
T Consensus 103 ImmvGLQGsGKTTt~-~KL-A~~lkk-~---~~kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~~~~~~Pv~I--- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTA-GKL-AKYLKK-K---GKKVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGSGTEKDPVEI--- 170 (451)
T ss_pred EEEEeccCCChHhHH-HHH-HHHHHH-c---CCceEEEecccCChHH---HHHHHHHHHHcCCceecCCCCCCHHHH---
Confidence 668999999999863 222 223332 1 12344444 2 34444 344666666666655443112222110
Q ss_pred HhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
+ ...+. .+....+++||||=|-|+- +...-.++..|-..+.+.--++++-|++..+....+.
T Consensus 171 ---------a-----k~al~---~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~ 233 (451)
T COG0541 171 ---------A-----KAALE---KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK 233 (451)
T ss_pred ---------H-----HHHHH---HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH
Confidence 0 01111 1223456789999998765 4556777888888887777778888998888777665
Q ss_pred Hh
Q 004808 322 LS 323 (729)
Q Consensus 322 ~~ 323 (729)
.|
T Consensus 234 aF 235 (451)
T COG0541 234 AF 235 (451)
T ss_pred HH
Confidence 54
No 472
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.19 E-value=6.5 Score=47.48 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
++.+++.||+|+|||..
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 57899999999999975
No 473
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=83.18 E-value=2.3 Score=42.98 Aligned_cols=45 Identities=22% Similarity=0.031 Sum_probs=24.6
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|.-+.+.|++|+|||...+..+...+....-......++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 445669999999999764433333322211011123567766543
No 474
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=83.18 E-value=1.7 Score=55.00 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=42.7
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
.+.+++|.|..|||||.+...-++..|+... +.....+|||+.|+..+..+...+.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-~~~v~~ILvvTFT~aAa~Emk~RI~ 70 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-PLDVDEILVVTFTKAAAAEMKERIR 70 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-CCChhHeeeeeccHHHHHHHHHHHH
Confidence 4679999999999999987666776666543 2345579999999988776665554
No 475
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.91 E-value=7.3 Score=42.68 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+.++++||.|+|||...
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999753
No 476
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.84 E-value=5.1 Score=49.00 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+++|+.||+|+|||.+.
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999864
No 477
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.79 E-value=2.7 Score=48.96 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
+.+-.++|+|||---++..-...+.+.+..+..+ +++++=|-
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 5566799999999988877677777888777666 56666554
No 478
>PHA00012 I assembly protein
Probab=82.69 E-value=13 Score=39.80 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=18.8
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
-++.|..|||||+..+..++..+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 468999999999877666666653
No 479
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.61 E-value=2.7 Score=45.63 Aligned_cols=63 Identities=27% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 137 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 137 ~~~l~~~g~~~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
+..|...|+ +++.+...+..+.. +.+++++|+||||||... -.++..+ . +..+++++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i-~-----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV-A-----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC-C-----CCCcEEEECCccee
Confidence 444555565 45667777666555 579999999999999742 2233222 1 12357777777777
No 480
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=82.57 E-value=1 Score=44.10 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCc-CceEEEEecc
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSAT 311 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~-~~q~il~SAT 311 (729)
....++++||...-++......+..++..+.. ..++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45678999999998877666666666655433 3556655543
No 481
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.46 E-value=2.1 Score=42.88 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=23.8
Q ss_pred eEEEEeCcchhh-c----CChHHHHHHHHHhcC-cCceEEEEeccc
Q 004808 273 AVLILDEADRLL-E----LGFSAEIHELVRLCP-KRRQTMLFSATL 312 (729)
Q Consensus 273 ~~lVvDEah~ll-~----~gf~~~i~~il~~~~-~~~q~il~SATl 312 (729)
-+|||||+|.+. . ..+...+..++..+. .....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 489999999998 2 234455555555532 233445566665
No 482
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=82.42 E-value=5.1 Score=37.56 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
.+-.++|+||.-.-++......+..++..+. .+++++..-
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~ 126 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHD 126 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECC
Confidence 3446899999998887777777777776652 355555443
No 483
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=82.33 E-value=4.5 Score=45.87 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=55.7
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-cccCCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~-rGlDi~~ 438 (729)
...+||.|||+..+..+...+... ++.+..++|+.+...+...+. +..+|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 447999999999999888766542 678889999998876654443 5678999994 222 4578889
Q ss_pred ccEEEEeCC
Q 004808 439 VQTVINYAC 447 (729)
Q Consensus 439 v~~VI~~d~ 447 (729)
+++||.-..
T Consensus 148 l~~lViDEa 156 (460)
T PRK11776 148 LNTLVLDEA 156 (460)
T ss_pred CCEEEEECH
Confidence 999986443
No 484
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=82.24 E-value=2.4 Score=45.82 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
..+++.||+|+|||...
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999763
No 485
>CHL00176 ftsH cell division protein; Validated
Probab=82.16 E-value=7.4 Score=45.90 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=26.5
Q ss_pred eEEEEeCcchhhcC-------C---hHHHHHHHHHhc---CcCceEEEEecccchhH
Q 004808 273 AVLILDEADRLLEL-------G---FSAEIHELVRLC---PKRRQTMLFSATLTEDV 316 (729)
Q Consensus 273 ~~lVvDEah~ll~~-------g---f~~~i~~il~~~---~~~~q~il~SATl~~~v 316 (729)
.+|+|||+|.+... + ....+..++..+ .....++++.||-.++.
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 48999999998521 1 223344555443 23456778888865543
No 486
>PRK08840 replicative DNA helicase; Provisional
Probab=82.15 E-value=9.8 Score=43.16 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEE-ecCCChHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQ 239 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~-~gg~~~~~~ 239 (729)
.|.=+|+.|.||.|||... +-+..++.... +..|+|+..- .-..|+...+... ..++...-+ .|..+....
T Consensus 216 ~g~LiviaarPg~GKTafa-lnia~~~a~~~----~~~v~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~ 287 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA-MNLCENAAMDQ----DKPVLIFSLE-MPAEQLMMRMLAS--LSRVDQTKIRTGQLDDEDW 287 (464)
T ss_pred CCceEEEEeCCCCchHHHH-HHHHHHHHHhC----CCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHHhcCCCCHHHH
Confidence 3455678999999999654 33333332111 2236666432 2234555444322 123322222 233333222
Q ss_pred HH------HHhcCCCeEEE-Cc----hHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 240 ET------ALRSMPDIVVA-TP----GRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 240 ~~------~l~~~~dIvI~-TP----~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
.. .+.....+.|. +| ..+...++... .....+++||||=.|.|.
T Consensus 288 ~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 288 ARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 11 12123345443 33 33333332210 111257899999888775
No 487
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.06 E-value=4 Score=49.28 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=26.0
Q ss_pred eeEEEEeCcchhhcC-------Ch-HHHHHHHHHhcC---cCceEEEEecccchh
Q 004808 272 LAVLILDEADRLLEL-------GF-SAEIHELVRLCP---KRRQTMLFSATLTED 315 (729)
Q Consensus 272 i~~lVvDEah~ll~~-------gf-~~~i~~il~~~~---~~~q~il~SATl~~~ 315 (729)
..+|+|||+|.+... +. ...+..++..+. ....++++.||-.++
T Consensus 547 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 547 PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 458999999998621 11 223344444432 445677888885544
No 488
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.05 E-value=12 Score=45.72 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHHHHHHHh----c--CCCEEEEcCCCchhhHH
Q 004808 152 QAACIPLAL----T--GRDICGSAITGSGKTAA 178 (729)
Q Consensus 152 Q~~~i~~ll----~--g~dvlv~a~TGsGKT~a 178 (729)
|...|..++ . ..++|+.||.|+|||..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAV 224 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHH
Confidence 555555444 2 35899999999999975
No 489
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.93 E-value=0.87 Score=47.86 Aligned_cols=19 Identities=37% Similarity=0.274 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchhhHHh
Q 004808 161 TGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~ 179 (729)
...|+++.||||||||+.+
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 3468999999999999853
No 490
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=81.88 E-value=4.3 Score=40.25 Aligned_cols=53 Identities=21% Similarity=0.486 Sum_probs=43.4
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
..+-+++|+||.-.=++.-....+..++..+...-..++||...-+++..++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 45667999999987777667788888999998888899999988777776654
No 491
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.85 E-value=0.9 Score=43.17 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=63.9
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l 243 (729)
.+.+.+++|+|||.+ ++-+.+.|...+-. -.-|++|- +..=....++++..+..|.... ...
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~k----vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~---la~ 68 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYK----VGGFITPE----------VREGGKRIGFKIVDLATGEEGI---LAR 68 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCce----eeeEEeee----------eecCCeEeeeEEEEccCCceEE---EEE
Confidence 478999999999976 57777776554322 23466663 2222233566665554331100 000
Q ss_pred hcCCCeEEECchHHHHHHhccCcc----CCCCeeEEEEeCcchhh--cCChHHHHHHHHHhcC
Q 004808 244 RSMPDIVVATPGRMIDHLRNSMSV----DLDDLAVLILDEADRLL--ELGFSAEIHELVRLCP 300 (729)
Q Consensus 244 ~~~~dIvI~TP~~L~~~l~~~~~~----~l~~i~~lVvDEah~ll--~~gf~~~i~~il~~~~ 300 (729)
......-|+-|+..++.+.+-... .+..-+++||||.--|- ...|...+.+++..-+
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k 131 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK 131 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC
Confidence 011234445555444444321000 12335699999999775 4457787777765543
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=81.74 E-value=4.7 Score=40.21 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
|.-+.+.|++|+|||...+..+. +.... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~-~~~~~-----g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAV-NAARQ-----GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHhC-----CCeEEEEECC
Confidence 44567999999999976433333 33222 2346666553
No 493
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=81.35 E-value=3.3 Score=42.79 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCchhhHH
Q 004808 159 ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a 178 (729)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 494
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=81.34 E-value=3.9 Score=47.69 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=34.5
Q ss_pred EEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcC
Q 004808 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (729)
Q Consensus 228 ~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (729)
.+..||..+....+.-+. .-|=+-||+++.-|......+. +++|||.|.|...
T Consensus 380 R~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss 432 (782)
T COG0466 380 RISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSS 432 (782)
T ss_pred EEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcCC----eEEeechhhccCC
Confidence 345688777655433222 2445569999999976432222 8999999998753
No 495
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=81.30 E-value=11 Score=37.37 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=32.3
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhc-Cc--CceEEEEecccchhH
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLC-PK--RRQTMLFSATLTEDV 316 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~-~~--~~q~il~SATl~~~v 316 (729)
.+-.++|+||...-++......+..++... .. ..+++++|.--...+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 566799999999988877677776665554 22 356788876544433
No 496
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.30 E-value=2.4 Score=48.98 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=19.5
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.|+-+.+.||+|||||+. +-++..++
T Consensus 360 ~G~~vaIvG~SGsGKSTL--l~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTL--LMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 477888999999999974 45554443
No 497
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=81.19 E-value=7.6 Score=43.60 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=53.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||.|++++-|..++..+.. .++.+..++|+.+.......+ .+..+|+|||. .+.. ++++..
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~--GiDip~ 313 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAAR--GIDIDD 313 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----cccc--CccCCC
Confidence 34799999999999998888775 478899999998876654443 24579999993 3333 677888
Q ss_pred eeEEEE
Q 004808 272 LAVLIL 277 (729)
Q Consensus 272 i~~lVv 277 (729)
+.+||.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 888773
No 498
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=81.08 E-value=8.8 Score=39.26 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=28.9
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCC------CCCCCcEEEEEc---CcHHHHHHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRP------KRIPAIRVLILT---PTRELAVQVHSM 215 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~------~~~~~~~vLIl~---PtreLa~Q~~~~ 215 (729)
-.++.|+.|+|||...+..++......+ ....+.+||+++ |..++..++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAI 63 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHH
Confidence 3679999999999765443333221111 112345788888 444444444333
No 499
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=81.05 E-value=7.6 Score=40.27 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=55.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecC-CChHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG-LSTKMQE 240 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg-~~~~~~~ 240 (729)
|.=+++.|.||.|||... +-+..++.... +..|++++.-- -..++...+-... .++...-+..+ .......
T Consensus 19 g~L~vi~a~pg~GKT~~~-l~ia~~~a~~~----~~~vly~SlEm-~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFA-LQIALNAALNG----GYPVLYFSLEM-SEEELAARLLARL--SGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp T-EEEEEESTTSSHHHHH-HHHHHHHHHTT----SSEEEEEESSS--HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHHH
T ss_pred CcEEEEEecccCCchHHH-HHHHHHHHHhc----CCeEEEEcCCC-CHHHHHHHHHHHh--hcchhhhhhccccCHHHHH
Confidence 345679999999999764 44444443332 23578877531 1123333322211 22222222222 2222111
Q ss_pred H------HHhcCCCeEEECc----hHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 241 T------ALRSMPDIVVATP----GRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 241 ~------~l~~~~dIvI~TP----~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
. .+...+-++..+| ..|...+.... .....+.+||||=.|.|-.
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~-~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLK-REGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHH-HHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHH-hhccCCCEEEechHHHhcC
Confidence 1 1222222333443 34554444321 1126788999999998875
No 500
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=81.00 E-value=16 Score=43.00 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc------CccccccCCCCccEEE
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT------DVAARGLDIIGVQTVI 443 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT------d~~~rGlDi~~v~~VI 443 (729)
.+.+||.+|+...+......|...|+.+..+|++++..++..++..+..|..+||+.| .....-+....+.+||
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Q ss_pred EeCCC------CChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccc
Q 004808 444 NYACP------RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492 (729)
Q Consensus 444 ~~d~P------~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~ 492 (729)
.-... .+...-+.+++.....-..-.++.+...........|...++..
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~ 187 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLA 187 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCC
Done!