Query 004808
Match_columns 729
No_of_seqs 599 out of 3427
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6E-60 2E-64 528.1 45.1 364 121-489 52-420 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.2E-56 4.2E-61 496.9 41.8 369 124-498 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 3.3E-56 1.1E-60 494.1 41.9 365 121-489 11-395 (417)
4 3eiq_A Eukaryotic initiation f 100.0 5.6E-55 1.9E-59 483.6 38.9 368 124-497 39-407 (414)
5 1s2m_A Putative ATP-dependent 100.0 4.4E-54 1.5E-58 474.6 43.0 366 123-496 19-384 (400)
6 3sqw_A ATP-dependent RNA helic 100.0 4.2E-54 1.4E-58 498.2 39.6 364 132-495 28-416 (579)
7 3fht_A ATP-dependent RNA helic 100.0 1.1E-53 3.8E-58 472.6 40.2 368 122-497 22-400 (412)
8 1xti_A Probable ATP-dependent 100.0 7.3E-53 2.5E-57 463.0 44.5 364 125-495 8-376 (391)
9 3i5x_A ATP-dependent RNA helic 100.0 1.9E-53 6.5E-58 491.3 40.0 364 132-495 79-467 (563)
10 3pey_A ATP-dependent RNA helic 100.0 1E-52 3.4E-57 461.7 43.1 361 124-494 4-375 (395)
11 3fmp_B ATP-dependent RNA helic 100.0 2.1E-55 7.2E-60 497.7 20.1 365 123-495 90-465 (479)
12 1hv8_A Putative ATP-dependent 100.0 4.4E-52 1.5E-56 452.0 43.5 358 124-495 5-363 (367)
13 1fuu_A Yeast initiation factor 100.0 4.3E-54 1.5E-58 473.0 23.9 364 124-494 20-383 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.8E-50 6E-55 434.4 36.8 335 132-490 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.6E-49 5.3E-54 457.9 37.6 343 127-486 23-383 (591)
16 3oiy_A Reverse gyrase helicase 100.0 3.6E-49 1.2E-53 438.1 31.8 345 136-510 10-398 (414)
17 1oyw_A RECQ helicase, ATP-depe 100.0 4.1E-48 1.4E-52 441.3 34.5 341 125-488 2-354 (523)
18 3fho_A ATP-dependent RNA helic 100.0 3.3E-49 1.1E-53 449.7 19.8 361 126-496 120-490 (508)
19 3l9o_A ATP-dependent RNA helic 100.0 1.8E-47 6.1E-52 467.1 26.3 344 125-488 162-609 (1108)
20 1tf5_A Preprotein translocase 100.0 2.2E-45 7.5E-50 424.3 35.6 325 142-479 79-547 (844)
21 4a2p_A RIG-I, retinoic acid in 100.0 5.3E-46 1.8E-50 427.5 30.0 336 144-482 4-513 (556)
22 2ykg_A Probable ATP-dependent 100.0 2E-45 6.7E-50 434.9 27.3 346 137-485 3-524 (696)
23 3tbk_A RIG-I helicase domain; 100.0 4.6E-45 1.6E-49 419.1 28.1 335 147-485 4-515 (555)
24 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-44 6.2E-49 440.5 31.3 319 142-490 74-503 (1104)
25 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-44 5.8E-49 432.3 29.8 337 142-481 243-753 (797)
26 1gku_B Reverse gyrase, TOP-RG; 100.0 2.2E-44 7.4E-49 440.0 25.9 321 141-491 52-468 (1054)
27 2fsf_A Preprotein translocase 100.0 2.1E-44 7.3E-49 414.7 23.1 324 143-479 71-585 (853)
28 2va8_A SSO2462, SKI2-type heli 100.0 3.9E-43 1.3E-47 416.3 34.4 336 124-478 7-409 (715)
29 2zj8_A DNA helicase, putative 100.0 2.2E-43 7.4E-48 418.5 29.1 335 126-478 2-388 (720)
30 2p6r_A Afuhel308 helicase; pro 100.0 1E-43 3.5E-48 420.1 24.5 334 126-478 2-389 (702)
31 4a2w_A RIG-I, retinoic acid in 100.0 2.5E-43 8.7E-48 427.1 27.7 337 142-481 243-753 (936)
32 1nkt_A Preprotein translocase 100.0 2E-42 6.8E-47 398.6 33.3 327 142-481 107-621 (922)
33 1wp9_A ATP-dependent RNA helic 100.0 5.4E-42 1.8E-46 385.3 32.8 324 147-479 9-477 (494)
34 2xgj_A ATP-dependent RNA helic 100.0 9.9E-42 3.4E-46 413.1 34.5 324 143-487 83-510 (1010)
35 4gl2_A Interferon-induced heli 100.0 6.9E-43 2.4E-47 413.3 20.5 326 147-478 7-520 (699)
36 4a4z_A Antiviral helicase SKI2 100.0 7.3E-41 2.5E-45 405.5 34.5 326 143-488 36-505 (997)
37 1gm5_A RECG; helicase, replica 100.0 5.7E-40 1.9E-44 386.3 24.3 321 134-479 356-699 (780)
38 2eyq_A TRCF, transcription-rep 100.0 2E-38 6.9E-43 389.6 36.3 323 130-477 586-922 (1151)
39 2whx_A Serine protease/ntpase/ 100.0 2.9E-41 9.9E-46 390.2 8.7 314 130-489 155-493 (618)
40 4f92_B U5 small nuclear ribonu 100.0 1.7E-38 5.8E-43 400.7 33.8 346 132-486 911-1317(1724)
41 2oca_A DAR protein, ATP-depend 100.0 2.4E-39 8.3E-44 368.9 23.0 313 146-475 112-453 (510)
42 2jlq_A Serine protease subunit 100.0 7.4E-40 2.5E-44 367.0 15.0 287 144-476 1-310 (451)
43 2xau_A PRE-mRNA-splicing facto 100.0 2.2E-38 7.6E-43 374.9 23.8 338 123-479 70-445 (773)
44 4f92_B U5 small nuclear ribonu 100.0 3.4E-38 1.2E-42 398.0 26.7 338 144-486 76-482 (1724)
45 2fwr_A DNA repair protein RAD2 100.0 3.4E-38 1.2E-42 355.9 21.3 295 147-477 93-454 (472)
46 3o8b_A HCV NS3 protease/helica 100.0 5.1E-39 1.8E-43 368.6 13.0 288 147-490 217-531 (666)
47 2wv9_A Flavivirin protease NS2 100.0 1.9E-39 6.4E-44 377.4 7.4 306 139-489 202-548 (673)
48 1yks_A Genome polyprotein [con 100.0 7.8E-39 2.7E-43 357.3 10.8 280 158-489 4-314 (440)
49 2z83_A Helicase/nucleoside tri 100.0 4.3E-37 1.5E-41 345.2 15.7 273 156-477 15-313 (459)
50 3fe2_A Probable ATP-dependent 100.0 1.8E-35 6.3E-40 303.8 25.9 212 122-334 26-239 (242)
51 3dmq_A RNA polymerase-associat 100.0 2.3E-35 7.8E-40 358.0 25.1 336 146-489 152-625 (968)
52 3ber_A Probable ATP-dependent 100.0 1.9E-34 6.5E-39 297.6 26.1 207 123-332 41-247 (249)
53 2v6i_A RNA helicase; membrane, 100.0 3E-35 1E-39 327.6 21.3 269 161-474 1-288 (431)
54 3fmo_B ATP-dependent RNA helic 100.0 8.3E-35 2.8E-39 308.4 21.8 205 123-333 90-298 (300)
55 3rc3_A ATP-dependent RNA helic 100.0 7.4E-35 2.5E-39 337.9 23.2 312 133-494 130-461 (677)
56 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-34 6.9E-39 297.9 22.2 221 123-344 21-251 (253)
57 3iuy_A Probable ATP-dependent 100.0 3.1E-34 1.1E-38 291.7 22.8 209 121-331 15-227 (228)
58 3h1t_A Type I site-specific re 100.0 9.9E-35 3.4E-39 336.8 20.9 304 147-466 178-545 (590)
59 2pl3_A Probable ATP-dependent 100.0 7.4E-34 2.5E-38 290.5 24.8 209 124-333 24-233 (236)
60 1vec_A ATP-dependent RNA helic 100.0 1.5E-33 5.1E-38 281.7 25.2 202 125-330 3-205 (206)
61 3bor_A Human initiation factor 100.0 8.3E-34 2.8E-38 290.5 22.8 207 123-333 28-235 (237)
62 3ly5_A ATP-dependent RNA helic 100.0 1E-33 3.4E-38 294.4 23.7 207 122-328 49-258 (262)
63 2gxq_A Heat resistant RNA depe 100.0 1.9E-33 6.6E-38 281.0 24.7 204 126-332 2-205 (207)
64 1q0u_A Bstdead; DEAD protein, 100.0 6.1E-34 2.1E-38 287.8 20.0 205 125-333 4-212 (219)
65 2oxc_A Probable ATP-dependent 100.0 1.7E-33 5.7E-38 286.9 23.0 206 122-332 21-228 (230)
66 3jux_A Protein translocase sub 100.0 2.9E-31 1E-35 299.6 41.3 321 143-481 72-591 (822)
67 1qde_A EIF4A, translation init 100.0 4.9E-33 1.7E-37 281.8 23.8 205 124-333 13-217 (224)
68 1z63_A Helicase of the SNF2/RA 100.0 2.9E-33 9.8E-38 318.0 23.3 312 147-478 37-454 (500)
69 1t6n_A Probable ATP-dependent 100.0 3.1E-32 1.1E-36 275.2 23.8 205 123-331 12-219 (220)
70 3dkp_A Probable ATP-dependent 100.0 2.1E-32 7.1E-37 281.3 19.8 210 123-334 23-242 (245)
71 3mwy_W Chromo domain-containin 100.0 7.5E-31 2.6E-35 313.6 29.6 330 147-489 236-698 (800)
72 1z3i_X Similar to RAD54-like; 100.0 3.8E-30 1.3E-34 300.2 34.6 323 147-478 55-529 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.3E-31 1.8E-35 317.7 27.4 341 134-490 251-721 (1038)
74 1c4o_A DNA nucleotide excision 100.0 1.5E-30 5E-35 303.7 23.9 201 369-578 438-644 (664)
75 2d7d_A Uvrabc system protein B 100.0 1.2E-29 4.1E-34 295.9 23.4 260 301-577 385-658 (661)
76 2ipc_A Preprotein translocase 100.0 2.4E-27 8.4E-32 272.2 35.0 131 143-284 76-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 1.2E-25 4.3E-30 216.2 19.5 154 338-494 6-159 (163)
78 2rb4_A ATP-dependent RNA helic 99.9 2.8E-25 9.7E-30 216.2 19.1 158 338-497 4-167 (175)
79 1t5i_A C_terminal domain of A 99.9 3.4E-25 1.2E-29 215.1 17.7 154 339-495 3-157 (172)
80 3eaq_A Heat resistant RNA depe 99.9 6.8E-25 2.3E-29 220.4 20.4 145 355-499 16-160 (212)
81 2p6n_A ATP-dependent RNA helic 99.9 2.8E-25 9.6E-30 219.3 17.2 165 321-489 9-174 (191)
82 1fuk_A Eukaryotic initiation f 99.9 6.9E-25 2.4E-29 211.4 17.5 154 341-496 3-156 (165)
83 3i32_A Heat resistant RNA depe 99.9 4.7E-24 1.6E-28 224.7 19.5 155 342-499 3-157 (300)
84 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.9E-24 6.6E-29 212.3 15.4 150 338-490 16-166 (185)
85 3b6e_A Interferon-induced heli 99.9 7.2E-24 2.5E-28 212.4 10.8 168 143-311 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 3.3E-25 1.1E-29 214.7 0.0 155 342-498 4-158 (170)
87 2vl7_A XPD; helicase, unknown 99.9 2.5E-22 8.4E-27 229.6 22.8 128 143-284 4-188 (540)
88 3llm_A ATP-dependent RNA helic 99.9 5.3E-22 1.8E-26 202.5 14.9 183 133-328 47-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 2.3E-20 7.8E-25 214.0 29.2 281 144-449 1-473 (551)
90 1rif_A DAR protein, DNA helica 99.8 5E-21 1.7E-25 200.7 10.8 155 147-317 113-267 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 1.5E-17 5E-22 192.4 24.1 82 147-233 3-88 (620)
92 2fz4_A DNA repair protein RAD2 99.8 3.9E-18 1.3E-22 174.0 15.6 138 147-315 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 2.8E-18 9.7E-23 178.3 14.4 124 355-478 95-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 7E-09 2.4E-13 119.7 9.5 145 149-311 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.1 2.2E-05 7.5E-10 82.0 12.5 122 354-480 107-240 (328)
96 3upu_A ATP-dependent DNA helic 98.0 2E-05 6.7E-10 87.8 12.2 139 141-309 19-162 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.0 2.3E-05 7.9E-10 89.5 11.5 122 147-310 189-314 (574)
98 2gk6_A Regulator of nonsense t 98.0 6.1E-05 2.1E-09 87.1 14.9 69 145-218 178-246 (624)
99 4b3f_X DNA-binding protein smu 97.8 5E-05 1.7E-09 88.3 11.6 66 147-218 189-255 (646)
100 2xzl_A ATP-dependent helicase 97.8 9.8E-05 3.4E-09 87.5 14.0 70 145-219 358-427 (802)
101 2wjy_A Regulator of nonsense t 97.8 0.00014 4.9E-09 86.0 15.2 69 145-218 354-422 (800)
102 3lfu_A DNA helicase II; SF1 he 97.7 0.0011 3.8E-08 76.7 19.9 72 146-221 8-79 (647)
103 2o0j_A Terminase, DNA packagin 96.9 0.0069 2.4E-07 65.2 13.3 72 147-222 163-234 (385)
104 3ec2_A DNA replication protein 96.5 0.0088 3E-07 56.9 9.7 30 149-178 16-54 (180)
105 3cpe_A Terminase, DNA packagin 96.4 0.0065 2.2E-07 69.6 9.3 72 147-222 163-234 (592)
106 2orw_A Thymidine kinase; TMTK, 96.2 0.022 7.6E-07 54.6 10.3 39 162-206 3-41 (184)
107 1l8q_A Chromosomal replication 96.0 0.028 9.4E-07 58.9 10.9 17 162-178 37-53 (324)
108 3vkw_A Replicase large subunit 96.0 0.02 6.9E-07 62.4 9.9 107 164-311 163-269 (446)
109 1xx6_A Thymidine kinase; NESG, 95.9 0.013 4.4E-07 56.8 7.1 39 162-206 8-46 (191)
110 3u4q_A ATP-dependent helicase/ 95.9 0.014 4.7E-07 72.7 9.1 126 147-282 10-138 (1232)
111 2b8t_A Thymidine kinase; deoxy 95.9 0.0083 2.8E-07 59.6 5.8 91 162-284 12-102 (223)
112 3te6_A Regulatory protein SIR3 95.7 0.045 1.5E-06 57.3 10.7 27 162-189 45-71 (318)
113 2kjq_A DNAA-related protein; s 95.6 0.0068 2.3E-07 56.1 3.8 42 271-313 83-125 (149)
114 1pjr_A PCRA; DNA repair, DNA r 95.5 0.02 6.7E-07 67.3 8.1 82 146-231 10-93 (724)
115 3kl4_A SRP54, signal recogniti 95.4 0.068 2.3E-06 58.3 11.3 130 164-323 99-234 (433)
116 1uaa_A REP helicase, protein ( 95.2 0.014 4.8E-07 67.9 5.5 81 147-231 2-85 (673)
117 1a5t_A Delta prime, HOLB; zinc 95.2 0.025 8.7E-07 59.7 6.8 41 148-189 3-50 (334)
118 2w58_A DNAI, primosome compone 95.1 0.095 3.2E-06 50.5 10.2 24 163-187 55-78 (202)
119 2z4s_A Chromosomal replication 94.9 0.083 2.9E-06 58.0 10.3 40 271-310 194-235 (440)
120 2j9r_A Thymidine kinase; TK1, 94.8 0.028 9.6E-07 55.1 5.3 40 162-207 28-67 (214)
121 3dm5_A SRP54, signal recogniti 94.7 0.12 4.1E-06 56.5 10.7 130 164-323 102-235 (443)
122 1d2n_A N-ethylmaleimide-sensit 94.7 0.24 8.3E-06 50.1 12.5 17 163-179 65-81 (272)
123 3e2i_A Thymidine kinase; Zn-bi 94.6 0.082 2.8E-06 51.8 7.9 40 162-207 28-67 (219)
124 1sxj_E Activator 1 40 kDa subu 94.3 0.33 1.1E-05 51.0 13.0 43 269-312 132-174 (354)
125 2qby_B CDC6 homolog 3, cell di 94.3 0.15 5E-06 54.4 10.3 16 163-178 46-61 (384)
126 3bos_A Putative DNA replicatio 94.3 0.043 1.5E-06 54.1 5.6 18 161-178 51-68 (242)
127 2orv_A Thymidine kinase; TP4A 94.3 0.056 1.9E-06 53.6 6.1 39 162-206 19-57 (234)
128 2chg_A Replication factor C sm 94.1 0.43 1.5E-05 45.8 12.4 40 270-310 101-140 (226)
129 3n70_A Transport activator; si 94.0 0.2 6.9E-06 45.6 9.1 20 159-178 21-40 (145)
130 2zpa_A Uncharacterized protein 94.0 0.064 2.2E-06 61.4 6.7 113 147-313 175-289 (671)
131 3syl_A Protein CBBX; photosynt 94.0 0.061 2.1E-06 55.6 6.2 17 163-179 68-84 (309)
132 2p65_A Hypothetical protein PF 93.9 0.25 8.6E-06 46.1 10.0 17 162-178 43-59 (187)
133 2v1u_A Cell division control p 93.9 0.13 4.3E-06 54.7 8.7 17 162-178 44-60 (387)
134 3h4m_A Proteasome-activating n 93.9 0.25 8.4E-06 50.3 10.4 52 124-178 13-67 (285)
135 3u61_B DNA polymerase accessor 93.5 0.16 5.5E-06 52.9 8.5 40 270-309 104-143 (324)
136 1jbk_A CLPB protein; beta barr 93.4 0.29 1E-05 45.8 9.5 25 162-187 43-67 (195)
137 1fnn_A CDC6P, cell division co 93.2 0.16 5.6E-06 54.0 8.0 15 164-178 46-60 (389)
138 1g5t_A COB(I)alamin adenosyltr 93.2 0.44 1.5E-05 45.9 10.1 52 270-321 119-172 (196)
139 2qgz_A Helicase loader, putati 92.9 0.19 6.5E-06 52.2 7.8 18 162-179 152-169 (308)
140 1njg_A DNA polymerase III subu 92.5 0.9 3.1E-05 44.0 11.9 15 164-178 47-61 (250)
141 1w4r_A Thymidine kinase; type 92.3 0.19 6.6E-06 48.4 6.2 38 162-205 20-57 (195)
142 3eie_A Vacuolar protein sortin 91.6 0.24 8.2E-06 51.7 6.6 49 124-178 14-67 (322)
143 2qby_A CDC6 homolog 1, cell di 91.4 0.84 2.9E-05 48.1 10.8 17 162-178 45-61 (386)
144 1gm5_A RECG; helicase, replica 91.3 0.52 1.8E-05 55.4 9.7 79 370-448 417-500 (780)
145 1jr3_A DNA polymerase III subu 91.0 0.78 2.7E-05 48.4 10.1 39 269-308 117-155 (373)
146 3pfi_A Holliday junction ATP-d 90.7 0.56 1.9E-05 49.0 8.5 16 163-178 56-71 (338)
147 2rb4_A ATP-dependent RNA helic 90.5 1.2 4.2E-05 41.6 9.9 71 196-277 34-108 (175)
148 2qp9_X Vacuolar protein sortin 90.5 0.44 1.5E-05 50.5 7.5 18 162-179 84-101 (355)
149 1sxj_D Activator 1 41 kDa subu 90.5 0.33 1.1E-05 50.9 6.5 39 270-309 132-170 (353)
150 2qz4_A Paraplegin; AAA+, SPG7, 90.4 1.6 5.4E-05 43.4 11.3 17 162-178 39-55 (262)
151 3b9p_A CG5977-PA, isoform A; A 90.4 0.54 1.8E-05 48.1 7.9 17 162-178 54-70 (297)
152 2hjv_A ATP-dependent RNA helic 90.3 1.2 4.2E-05 41.1 9.6 72 197-279 36-111 (163)
153 2r6a_A DNAB helicase, replicat 90.2 1.2 4.1E-05 48.8 10.9 112 162-285 203-327 (454)
154 1iqp_A RFCS; clamp loader, ext 90.1 0.78 2.7E-05 47.3 8.9 39 270-309 109-147 (327)
155 1sxj_A Activator 1 95 kDa subu 89.9 1.5 5.1E-05 48.9 11.6 41 270-312 147-189 (516)
156 3vfd_A Spastin; ATPase, microt 89.8 0.65 2.2E-05 49.8 8.2 17 162-178 148-164 (389)
157 1xwi_A SKD1 protein; VPS4B, AA 89.7 0.46 1.6E-05 49.6 6.7 16 163-178 46-61 (322)
158 3cf0_A Transitional endoplasmi 89.7 0.81 2.8E-05 47.1 8.5 17 162-178 49-65 (301)
159 2p6n_A ATP-dependent RNA helic 89.6 1.6 5.6E-05 41.6 10.1 70 197-277 55-128 (191)
160 2q6t_A DNAB replication FORK h 89.3 1.8 6E-05 47.3 11.3 114 162-286 200-325 (444)
161 3oiy_A Reverse gyrase helicase 89.1 1.1 3.9E-05 48.0 9.6 80 368-447 62-148 (414)
162 1fuk_A Eukaryotic initiation f 88.8 1.6 5.5E-05 40.3 9.2 72 196-278 30-105 (165)
163 3eaq_A Heat resistant RNA depe 88.8 1.5 5.1E-05 42.6 9.3 70 197-277 32-105 (212)
164 2ehv_A Hypothetical protein PH 88.8 0.29 1E-05 48.5 4.2 46 270-315 134-184 (251)
165 1sxj_C Activator 1 40 kDa subu 88.6 1.4 4.6E-05 46.2 9.5 39 270-309 109-147 (340)
166 2w0m_A SSO2452; RECA, SSPF, un 88.6 0.85 2.9E-05 44.3 7.4 17 162-178 23-39 (235)
167 1n0w_A DNA repair protein RAD5 88.3 1.4 5E-05 43.1 9.0 18 162-179 24-41 (243)
168 3hu3_A Transitional endoplasmi 88.1 1.9 6.5E-05 47.7 10.6 42 273-314 299-350 (489)
169 1sxj_B Activator 1 37 kDa subu 88.0 1.3 4.4E-05 45.5 8.7 38 271-309 107-144 (323)
170 4b4t_J 26S protease regulatory 88.0 2.3 8E-05 45.6 10.8 53 123-178 143-198 (405)
171 2eyq_A TRCF, transcription-rep 87.8 2 6.9E-05 52.8 11.4 76 369-444 651-731 (1151)
172 2gno_A DNA polymerase III, gam 87.5 1.1 3.8E-05 46.3 7.8 40 269-309 80-119 (305)
173 4b4t_H 26S protease regulatory 87.3 0.85 2.9E-05 49.8 6.9 53 123-178 204-259 (467)
174 1t5i_A C_terminal domain of A 87.1 2 6.9E-05 40.1 8.7 87 197-298 32-122 (172)
175 1hqc_A RUVB; extended AAA-ATPa 87.1 1 3.6E-05 46.4 7.3 17 162-178 38-54 (324)
176 4ddu_A Reverse gyrase; topoiso 87.1 1.4 4.6E-05 54.0 9.3 79 368-447 119-205 (1104)
177 1t6n_A Probable ATP-dependent 86.7 2.3 7.9E-05 41.0 9.2 74 370-446 82-166 (220)
178 2zan_A Vacuolar protein sortin 86.6 0.94 3.2E-05 49.5 6.9 17 162-178 167-183 (444)
179 2zts_A Putative uncharacterize 86.5 0.61 2.1E-05 46.0 5.0 24 162-185 30-53 (251)
180 2dr3_A UPF0273 protein PH0284; 86.5 0.67 2.3E-05 45.6 5.2 50 161-217 22-71 (247)
181 4b4t_K 26S protease regulatory 86.2 1.4 4.8E-05 47.8 8.0 53 123-178 167-222 (428)
182 3hjh_A Transcription-repair-co 86.0 1.9 6.4E-05 47.6 9.0 51 161-220 13-63 (483)
183 3pvs_A Replication-associated 85.9 0.93 3.2E-05 49.7 6.4 16 163-178 51-66 (447)
184 3k1j_A LON protease, ATP-depen 85.2 4.6 0.00016 45.9 12.0 31 156-188 54-84 (604)
185 2chq_A Replication factor C sm 84.5 0.39 1.3E-05 49.4 2.5 15 164-178 40-54 (319)
186 3ber_A Probable ATP-dependent 84.4 4.2 0.00014 40.3 10.0 75 368-446 109-194 (249)
187 2jgn_A DBX, DDX3, ATP-dependen 84.3 1.7 5.6E-05 41.3 6.6 88 172-277 29-120 (185)
188 1w5s_A Origin recognition comp 83.9 1.4 4.9E-05 46.9 6.7 16 163-178 51-68 (412)
189 2z43_A DNA repair and recombin 83.6 1.4 4.9E-05 45.8 6.3 63 155-218 95-164 (324)
190 2i4i_A ATP-dependent RNA helic 83.4 5.1 0.00017 42.6 10.9 72 195-277 275-350 (417)
191 3bh0_A DNAB-like replicative h 83.3 3.6 0.00012 42.6 9.3 49 162-217 68-116 (315)
192 2oxc_A Probable ATP-dependent 83.2 3.1 0.00011 40.5 8.4 72 368-444 90-172 (230)
193 3i5x_A ATP-dependent RNA helic 83.0 8.6 0.00029 42.9 13.0 76 196-279 339-418 (563)
194 2fna_A Conserved hypothetical 82.7 26 0.0009 35.8 15.9 52 254-311 124-178 (357)
195 2ce7_A Cell division protein F 82.5 1.9 6.3E-05 47.6 6.9 16 163-178 50-65 (476)
196 3i32_A Heat resistant RNA depe 82.3 3 0.0001 42.9 8.1 70 197-277 29-102 (300)
197 3cmu_A Protein RECA, recombina 82.2 1.5 5.3E-05 56.2 6.8 44 156-205 1415-1464(2050)
198 1qvr_A CLPB protein; coiled co 82.1 2.2 7.4E-05 50.8 7.9 17 162-178 191-207 (854)
199 3e70_C DPA, signal recognition 81.9 8.6 0.00029 40.0 11.5 52 272-323 212-264 (328)
200 3co5_A Putative two-component 81.4 1 3.5E-05 40.7 3.7 22 157-178 22-43 (143)
201 3fe2_A Probable ATP-dependent 81.4 4.4 0.00015 39.8 8.8 74 369-446 101-184 (242)
202 3fht_A ATP-dependent RNA helic 80.9 5.2 0.00018 42.3 9.8 71 196-277 266-340 (412)
203 3sqw_A ATP-dependent RNA helic 80.5 12 0.00041 42.1 13.0 77 196-280 288-368 (579)
204 3pey_A ATP-dependent RNA helic 80.3 19 0.00065 37.4 14.0 77 195-282 242-322 (395)
205 1vec_A ATP-dependent RNA helic 80.3 6 0.00021 37.4 9.1 72 369-444 70-152 (206)
206 1oyw_A RECQ helicase, ATP-depe 79.3 3.8 0.00013 45.7 8.2 75 370-444 65-145 (523)
207 2v1x_A ATP-dependent DNA helic 79.1 4 0.00014 46.2 8.4 75 370-444 84-171 (591)
208 3bor_A Human initiation factor 78.4 4.4 0.00015 39.7 7.6 74 369-445 97-180 (237)
209 1yks_A Genome polyprotein [con 78.3 2.6 9E-05 45.9 6.4 68 197-276 178-245 (440)
210 1ls1_A Signal recognition part 78.3 6.8 0.00023 40.1 9.2 17 162-178 98-114 (295)
211 4a1f_A DNAB helicase, replicat 78.3 2.1 7.2E-05 44.9 5.3 112 162-284 46-169 (338)
212 1xti_A Probable ATP-dependent 77.9 7.5 0.00026 40.8 9.7 73 370-445 76-159 (391)
213 2i1q_A DNA repair and recombin 77.8 4.1 0.00014 42.1 7.4 25 155-179 86-115 (322)
214 2j0s_A ATP-dependent RNA helic 77.3 8.2 0.00028 40.9 9.9 70 197-277 277-350 (410)
215 1s2m_A Putative ATP-dependent 76.8 7.7 0.00026 40.9 9.5 71 196-277 258-332 (400)
216 2d7d_A Uvrabc system protein B 76.4 6.4 0.00022 45.2 9.2 77 196-283 445-525 (661)
217 1hv8_A Putative ATP-dependent 75.6 7.5 0.00026 40.2 8.9 72 196-278 238-313 (367)
218 2v6i_A RNA helicase; membrane, 75.6 4.8 0.00017 43.6 7.5 67 197-275 172-238 (431)
219 3pxi_A Negative regulator of g 75.4 2 6.8E-05 50.4 4.6 15 164-178 523-537 (758)
220 2oap_1 GSPE-2, type II secreti 75.2 3 0.0001 46.4 5.8 39 138-178 237-276 (511)
221 1r6b_X CLPA protein; AAA+, N-t 75.0 6.8 0.00023 45.8 9.1 17 162-178 207-223 (758)
222 2pl3_A Probable ATP-dependent 74.9 5.3 0.00018 38.9 7.0 72 369-445 96-178 (236)
223 1ypw_A Transitional endoplasmi 74.8 9 0.00031 45.1 10.0 17 162-178 238-254 (806)
224 2l8b_A Protein TRAI, DNA helic 74.8 4.7 0.00016 38.2 6.0 60 148-212 35-96 (189)
225 2db3_A ATP-dependent RNA helic 74.7 9.5 0.00033 41.1 9.6 68 199-277 303-374 (434)
226 2xau_A PRE-mRNA-splicing facto 74.2 6.5 0.00022 46.1 8.6 75 196-277 303-393 (773)
227 2ffh_A Protein (FFH); SRP54, s 73.8 17 0.00059 39.1 11.2 16 163-178 99-114 (425)
228 3cf2_A TER ATPase, transitiona 73.8 4.9 0.00017 47.1 7.3 44 272-315 298-351 (806)
229 1pzn_A RAD51, DNA repair and r 73.4 6.9 0.00024 41.1 7.8 25 155-179 119-148 (349)
230 3iuy_A Probable ATP-dependent 73.4 5.6 0.00019 38.5 6.7 74 369-446 93-175 (228)
231 2gxq_A Heat resistant RNA depe 73.3 9 0.00031 36.1 8.1 74 369-446 71-152 (207)
232 2xxa_A Signal recognition part 72.4 12 0.0004 40.6 9.5 16 164-179 102-117 (433)
233 1c4o_A DNA nucleotide excision 72.1 9.3 0.00032 43.9 9.1 77 196-283 439-519 (664)
234 1qde_A EIF4A, translation init 72.1 5.7 0.00019 38.2 6.4 74 368-446 80-163 (224)
235 1e9r_A Conjugal transfer prote 71.3 2.3 7.8E-05 46.2 3.5 44 161-210 52-95 (437)
236 2yhs_A FTSY, cell division pro 71.1 5.9 0.0002 43.6 6.7 33 164-202 295-327 (503)
237 3lda_A DNA repair protein RAD5 71.0 7.9 0.00027 41.5 7.6 18 162-179 178-195 (400)
238 3hr8_A Protein RECA; alpha and 71.0 3.4 0.00012 43.6 4.7 39 162-206 61-99 (356)
239 2wv9_A Flavivirin protease NS2 70.0 5.2 0.00018 46.0 6.4 69 196-276 410-478 (673)
240 4b4t_M 26S protease regulatory 69.8 1.5 5.1E-05 47.7 1.6 53 123-178 176-231 (434)
241 2yjt_D ATP-dependent RNA helic 72.5 0.95 3.3E-05 42.2 0.0 71 196-277 30-104 (170)
242 1wp9_A ATP-dependent RNA helic 69.2 20 0.0007 38.2 10.8 95 171-280 340-446 (494)
243 1p9r_A General secretion pathw 69.0 5.1 0.00017 43.3 5.6 27 152-178 155-183 (418)
244 1wrb_A DJVLGB; RNA helicase, D 68.1 12 0.00041 36.8 7.9 73 370-446 100-182 (253)
245 1w36_B RECB, exodeoxyribonucle 67.3 5.4 0.00019 49.2 6.1 56 164-219 18-79 (1180)
246 3cf2_A TER ATPase, transitiona 66.8 7.7 0.00026 45.4 6.9 53 123-178 472-527 (806)
247 3bgw_A DNAB-like replicative h 66.7 6 0.0002 43.1 5.7 37 162-204 197-233 (444)
248 2jlq_A Serine protease subunit 66.0 8.2 0.00028 42.0 6.7 68 197-276 189-256 (451)
249 2r44_A Uncharacterized protein 65.9 3.4 0.00011 42.8 3.3 25 154-178 38-62 (331)
250 2v3c_C SRP54, signal recogniti 65.5 5.3 0.00018 43.4 4.9 17 163-179 100-116 (432)
251 3b85_A Phosphate starvation-in 65.0 5.4 0.00018 38.6 4.4 32 147-178 7-38 (208)
252 2gza_A Type IV secretion syste 64.9 4.3 0.00015 42.9 4.0 20 159-178 172-191 (361)
253 1q0u_A Bstdead; DEAD protein, 64.7 6.5 0.00022 37.8 5.0 72 369-444 71-156 (219)
254 3fmo_B ATP-dependent RNA helic 64.6 7.7 0.00026 39.6 5.8 70 370-446 162-243 (300)
255 3ly5_A ATP-dependent RNA helic 64.4 19 0.00065 35.7 8.6 73 369-445 125-208 (262)
256 1q57_A DNA primase/helicase; d 64.2 6.3 0.00021 43.6 5.3 49 162-216 242-290 (503)
257 2pt7_A CAG-ALFA; ATPase, prote 63.7 4.5 0.00016 42.2 3.8 27 160-188 169-195 (330)
258 2oca_A DAR protein, ATP-depend 63.7 38 0.0013 36.9 11.7 74 198-281 349-426 (510)
259 3hws_A ATP-dependent CLP prote 63.4 8.3 0.00028 40.4 5.9 18 161-178 50-67 (363)
260 3nbx_X ATPase RAVA; AAA+ ATPas 63.0 7.3 0.00025 43.1 5.5 30 149-178 28-57 (500)
261 2whx_A Serine protease/ntpase/ 63.0 13 0.00046 42.2 7.9 68 197-276 356-423 (618)
262 4a2p_A RIG-I, retinoic acid in 62.7 15 0.0005 40.6 8.1 73 370-446 55-138 (556)
263 1fuu_A Yeast initiation factor 62.6 20 0.0007 37.3 8.9 73 369-446 88-170 (394)
264 1kgd_A CASK, peripheral plasma 62.5 3 0.0001 39.1 2.0 19 160-178 3-21 (180)
265 1lvg_A Guanylate kinase, GMP k 62.2 4.2 0.00014 38.8 3.0 26 161-188 3-28 (198)
266 2bjv_A PSP operon transcriptio 61.8 4.7 0.00016 40.1 3.5 19 160-178 27-45 (265)
267 2eyu_A Twitching motility prot 61.8 3.3 0.00011 41.6 2.2 19 160-178 23-41 (261)
268 1ofh_A ATP-dependent HSL prote 61.7 12 0.00041 37.8 6.6 17 162-178 50-66 (310)
269 4gl2_A Interferon-induced heli 61.1 9.1 0.00031 44.0 6.2 106 196-312 400-519 (699)
270 2j37_W Signal recognition part 60.6 47 0.0016 36.6 11.4 16 164-179 103-118 (504)
271 3cmw_A Protein RECA, recombina 59.9 12 0.0004 47.5 7.1 122 163-316 1432-1571(1706)
272 1zu4_A FTSY; GTPase, signal re 59.4 20 0.00067 37.1 7.8 16 163-178 106-121 (320)
273 2va8_A SSO2462, SKI2-type heli 59.2 24 0.00081 40.7 9.3 75 197-278 253-363 (715)
274 4ag6_A VIRB4 ATPase, type IV s 58.9 7.7 0.00026 41.2 4.7 42 161-208 34-75 (392)
275 1tf5_A Preprotein translocase 58.9 19 0.00066 42.1 8.2 72 367-444 121-209 (844)
276 1gku_B Reverse gyrase, TOP-RG; 58.5 18 0.0006 44.0 8.3 74 369-444 98-181 (1054)
277 3lw7_A Adenylate kinase relate 58.5 3.9 0.00013 37.3 2.0 14 165-178 4-17 (179)
278 3rc3_A ATP-dependent RNA helic 58.4 25 0.00085 40.4 9.1 73 199-283 323-401 (677)
279 3tbk_A RIG-I helicase domain; 58.4 11 0.00039 41.4 6.1 94 173-277 370-476 (555)
280 3vaa_A Shikimate kinase, SK; s 58.1 4.1 0.00014 38.7 2.1 18 161-178 24-41 (199)
281 3trf_A Shikimate kinase, SK; a 57.9 4.2 0.00014 37.9 2.1 18 162-179 5-22 (185)
282 3nwn_A Kinesin-like protein KI 57.6 6.6 0.00023 41.4 3.8 25 155-179 96-122 (359)
283 3eiq_A Eukaryotic initiation f 57.0 34 0.0011 35.9 9.4 74 369-445 107-190 (414)
284 1qhx_A CPT, protein (chloramph 56.9 4.3 0.00015 37.5 2.0 17 162-178 3-19 (178)
285 2z0m_A 337AA long hypothetical 56.7 17 0.0006 36.8 6.9 68 196-278 220-291 (337)
286 1u0j_A DNA replication protein 56.5 15 0.00053 36.8 6.1 42 135-179 74-121 (267)
287 3o8b_A HCV NS3 protease/helica 56.3 11 0.00039 43.0 5.7 67 195-276 395-461 (666)
288 3iij_A Coilin-interacting nucl 56.3 3.3 0.00011 38.5 1.1 20 160-179 9-28 (180)
289 1vma_A Cell division protein F 56.2 26 0.0009 35.8 8.0 16 163-178 105-120 (306)
290 3tau_A Guanylate kinase, GMP k 56.0 4.5 0.00015 38.8 2.0 18 161-178 7-24 (208)
291 2qor_A Guanylate kinase; phosp 56.0 4.1 0.00014 38.9 1.7 20 159-178 9-28 (204)
292 3foz_A TRNA delta(2)-isopenten 55.8 4.6 0.00016 41.7 2.1 22 164-186 12-33 (316)
293 3exa_A TRNA delta(2)-isopenten 55.6 4.6 0.00016 41.8 2.1 16 164-179 5-20 (322)
294 1nkt_A Preprotein translocase 55.6 24 0.00081 41.6 8.2 72 367-444 149-237 (922)
295 2ze6_A Isopentenyl transferase 55.6 4.6 0.00016 40.3 2.0 15 165-179 4-18 (253)
296 2v9p_A Replication protein E1; 55.5 5.5 0.00019 41.0 2.7 25 162-188 126-150 (305)
297 3a8t_A Adenylate isopentenyltr 55.4 5 0.00017 42.0 2.3 17 163-179 41-57 (339)
298 3dkp_A Probable ATP-dependent 55.2 6.3 0.00022 38.6 3.0 74 370-446 98-183 (245)
299 1bg2_A Kinesin; motor protein, 55.0 8.1 0.00028 40.2 3.9 25 155-179 69-95 (325)
300 2x8a_A Nuclear valosin-contain 54.5 6.2 0.00021 39.8 2.8 52 124-178 6-60 (274)
301 4etp_A Kinesin-like protein KA 54.4 7.5 0.00026 41.7 3.6 25 155-179 132-158 (403)
302 2fsf_A Preprotein translocase 54.1 23 0.00079 41.4 7.8 71 368-444 113-200 (853)
303 2ewv_A Twitching motility prot 54.1 5.1 0.00017 42.5 2.2 18 161-178 135-152 (372)
304 1kag_A SKI, shikimate kinase I 54.1 6 0.00021 36.2 2.5 23 162-186 4-26 (173)
305 2nr8_A Kinesin-like protein KI 53.8 8.3 0.00029 40.6 3.8 25 155-179 95-121 (358)
306 2j41_A Guanylate kinase; GMP, 53.5 5.2 0.00018 37.9 2.0 18 161-178 5-22 (207)
307 2ius_A DNA translocase FTSK; n 53.4 13 0.00044 41.2 5.4 18 161-178 166-183 (512)
308 2h58_A Kinesin-like protein KI 53.3 8.9 0.0003 39.9 3.9 26 154-179 71-98 (330)
309 3dc4_A Kinesin-like protein NO 53.0 8.2 0.00028 40.4 3.5 25 155-179 86-112 (344)
310 2y65_A Kinesin, kinesin heavy 53.0 9 0.00031 40.5 3.9 25 155-179 76-102 (365)
311 3u06_A Protein claret segregat 52.9 8 0.00027 41.6 3.5 26 154-179 129-156 (412)
312 2z83_A Helicase/nucleoside tri 52.8 8.5 0.00029 42.0 3.8 68 197-276 191-258 (459)
313 1zp6_A Hypothetical protein AT 52.8 4.6 0.00016 37.8 1.5 18 161-178 8-25 (191)
314 2zfi_A Kinesin-like protein KI 52.7 9.1 0.00031 40.5 3.9 25 155-179 81-107 (366)
315 2vvg_A Kinesin-2; motor protei 52.7 9.2 0.00031 40.2 3.9 25 155-179 81-107 (350)
316 3a00_A Guanylate kinase, GMP k 52.4 6.4 0.00022 36.9 2.4 23 163-187 2-24 (186)
317 2ipc_A Preprotein translocase 52.4 32 0.0011 40.6 8.5 57 366-428 116-176 (997)
318 3b6u_A Kinesin-like protein KI 52.4 9 0.00031 40.6 3.8 25 155-179 93-119 (372)
319 3lre_A Kinesin-like protein KI 52.4 9 0.00031 40.3 3.7 25 155-179 97-123 (355)
320 1tue_A Replication protein E1; 52.3 16 0.00056 35.2 5.2 50 134-186 28-81 (212)
321 3gbj_A KIF13B protein; kinesin 52.3 9 0.00031 40.3 3.7 25 155-179 84-110 (354)
322 1ly1_A Polynucleotide kinase; 52.3 5.7 0.0002 36.5 2.0 14 165-178 5-18 (181)
323 1j8m_F SRP54, signal recogniti 52.2 71 0.0024 32.3 10.5 16 164-179 100-115 (297)
324 1t5c_A CENP-E protein, centrom 52.2 9.2 0.00031 40.1 3.8 25 155-179 69-95 (349)
325 2ykg_A Probable ATP-dependent 52.1 8.5 0.00029 44.2 3.9 76 196-278 398-486 (696)
326 1ojl_A Transcriptional regulat 52.1 7.9 0.00027 39.7 3.2 18 161-178 24-41 (304)
327 3uk6_A RUVB-like 2; hexameric 52.0 5.4 0.00018 41.8 2.0 17 162-178 70-86 (368)
328 3ney_A 55 kDa erythrocyte memb 52.0 5.8 0.0002 38.1 2.0 19 160-178 17-35 (197)
329 1kht_A Adenylate kinase; phosp 51.8 5.9 0.0002 36.9 2.0 17 162-178 3-19 (192)
330 3vkg_A Dynein heavy chain, cyt 51.8 17 0.0006 48.9 7.0 71 132-206 873-947 (3245)
331 1goj_A Kinesin, kinesin heavy 51.7 9.4 0.00032 40.2 3.7 25 155-179 72-98 (355)
332 2qmh_A HPR kinase/phosphorylas 51.4 5.3 0.00018 38.4 1.6 17 162-178 34-50 (205)
333 3tr0_A Guanylate kinase, GMP k 51.4 6.1 0.00021 37.3 2.1 25 161-187 6-30 (205)
334 4a14_A Kinesin, kinesin-like p 51.0 10 0.00034 39.8 3.8 25 155-179 75-101 (344)
335 3cob_A Kinesin heavy chain-lik 51.0 7.9 0.00027 41.0 3.0 25 155-179 71-97 (369)
336 1x88_A Kinesin-like protein KI 50.8 8.8 0.0003 40.5 3.4 25 155-179 80-106 (359)
337 4b4t_I 26S protease regulatory 50.8 6.5 0.00022 42.4 2.3 53 123-178 177-232 (437)
338 1lv7_A FTSH; alpha/beta domain 50.7 5.8 0.0002 39.3 1.9 17 162-178 45-61 (257)
339 1ex7_A Guanylate kinase; subst 50.6 7.3 0.00025 37.0 2.4 16 163-178 2-17 (186)
340 1v8k_A Kinesin-like protein KI 50.6 9.1 0.00031 41.1 3.5 25 155-179 146-172 (410)
341 3kb2_A SPBC2 prophage-derived 50.5 6.3 0.00022 35.9 2.0 15 164-178 3-17 (173)
342 2zj8_A DNA helicase, putative 50.5 33 0.0011 39.6 8.5 73 197-276 238-343 (720)
343 2wbe_C Bipolar kinesin KRP-130 50.4 9.4 0.00032 40.5 3.5 25 155-179 92-118 (373)
344 1y63_A LMAJ004144AAA protein; 50.4 6.4 0.00022 36.8 2.0 17 162-178 10-26 (184)
345 3u4q_B ATP-dependent helicase/ 50.4 8.1 0.00028 47.6 3.5 32 371-402 343-375 (1166)
346 3jvv_A Twitching mobility prot 49.7 6.3 0.00022 41.6 2.0 18 161-178 122-139 (356)
347 1z6g_A Guanylate kinase; struc 49.4 7.9 0.00027 37.5 2.6 26 161-188 22-47 (218)
348 1v5w_A DMC1, meiotic recombina 49.3 9.1 0.00031 40.0 3.2 50 155-205 110-165 (343)
349 3nwj_A ATSK2; P loop, shikimat 49.2 8.4 0.00029 38.4 2.8 21 158-178 44-64 (250)
350 2p6r_A Afuhel308 helicase; pro 49.1 22 0.00076 40.9 6.8 74 197-277 243-346 (702)
351 3bfn_A Kinesin-like protein KI 49.0 8.7 0.0003 40.9 3.0 24 156-179 91-116 (388)
352 1rj9_A FTSY, signal recognitio 48.9 12 0.00039 38.5 3.8 26 162-189 102-127 (304)
353 2owm_A Nckin3-434, related to 48.6 11 0.00039 40.8 3.9 25 155-179 128-154 (443)
354 3t0q_A AGR253WP; kinesin, alph 48.5 8.3 0.00029 40.5 2.7 25 155-179 77-103 (349)
355 2iut_A DNA translocase FTSK; n 48.5 17 0.00057 40.8 5.3 43 162-206 214-256 (574)
356 4a2q_A RIG-I, retinoic acid in 48.4 29 0.001 40.6 7.7 72 370-445 296-378 (797)
357 1znw_A Guanylate kinase, GMP k 47.8 9 0.00031 36.5 2.7 29 158-188 16-44 (207)
358 3cm0_A Adenylate kinase; ATP-b 47.7 5.5 0.00019 37.0 1.1 18 162-179 4-21 (186)
359 3crm_A TRNA delta(2)-isopenten 47.7 7.7 0.00026 40.3 2.3 16 164-179 7-22 (323)
360 4eun_A Thermoresistant glucoki 47.6 7.5 0.00026 36.9 2.0 18 161-178 28-45 (200)
361 2heh_A KIF2C protein; kinesin, 47.6 11 0.00037 40.1 3.4 25 155-179 126-152 (387)
362 3c8u_A Fructokinase; YP_612366 47.5 9 0.00031 36.6 2.6 25 162-188 22-46 (208)
363 3t15_A Ribulose bisphosphate c 47.5 6.9 0.00024 39.8 1.9 16 163-178 37-52 (293)
364 4gp7_A Metallophosphoesterase; 47.2 6.7 0.00023 36.3 1.6 18 162-179 9-26 (171)
365 3d3q_A TRNA delta(2)-isopenten 47.1 7.4 0.00025 40.7 2.0 16 164-179 9-24 (340)
366 3eph_A TRNA isopentenyltransfe 47.0 8.9 0.0003 41.1 2.6 21 165-186 5-25 (409)
367 1um8_A ATP-dependent CLP prote 46.9 8.3 0.00028 40.7 2.4 17 162-178 72-88 (376)
368 4b4t_L 26S protease subunit RP 46.6 7.2 0.00025 42.3 1.9 53 123-178 176-231 (437)
369 1f9v_A Kinesin-like protein KA 46.6 8.2 0.00028 40.5 2.3 25 155-179 76-102 (347)
370 1s96_A Guanylate kinase, GMP k 46.5 8.1 0.00028 37.6 2.1 20 159-178 13-32 (219)
371 3kta_A Chromosome segregation 46.2 12 0.0004 34.6 3.2 23 164-188 28-50 (182)
372 1ry6_A Internal kinesin; kines 46.0 11 0.00038 39.7 3.2 19 161-179 82-102 (360)
373 1m7g_A Adenylylsulfate kinase; 45.9 10 0.00035 36.2 2.8 30 148-178 12-41 (211)
374 1tf7_A KAIC; homohexamer, hexa 45.9 62 0.0021 35.7 9.6 40 269-309 369-413 (525)
375 3t61_A Gluconokinase; PSI-biol 45.7 8.2 0.00028 36.5 2.0 16 163-178 19-34 (202)
376 1ye8_A Protein THEP1, hypothet 45.7 11 0.00037 35.3 2.8 15 164-178 2-16 (178)
377 1knq_A Gluconate kinase; ALFA/ 45.6 7.3 0.00025 35.8 1.6 17 162-178 8-24 (175)
378 4a2w_A RIG-I, retinoic acid in 45.6 23 0.00077 42.5 6.2 78 196-280 631-721 (936)
379 1g8p_A Magnesium-chelatase 38 45.4 11 0.00036 39.0 3.0 17 162-178 45-61 (350)
380 2bdt_A BH3686; alpha-beta prot 45.4 8.5 0.00029 35.9 2.0 15 164-178 4-18 (189)
381 1sky_E F1-ATPase, F1-ATP synth 45.3 19 0.00066 39.2 5.0 20 160-179 149-168 (473)
382 2c9o_A RUVB-like 1; hexameric 45.1 8 0.00027 42.1 2.0 18 162-179 63-80 (456)
383 2rhm_A Putative kinase; P-loop 45.1 8.4 0.00029 35.9 1.9 17 162-178 5-21 (193)
384 1ixz_A ATP-dependent metallopr 44.6 8.6 0.00029 37.9 2.0 16 163-178 50-65 (254)
385 2rep_A Kinesin-like protein KI 44.5 10 0.00035 40.2 2.7 25 155-179 107-133 (376)
386 4fcw_A Chaperone protein CLPB; 44.4 10 0.00034 38.5 2.6 16 163-178 48-63 (311)
387 3nzo_A UDP-N-acetylglucosamine 44.4 1.4E+02 0.0047 31.4 11.8 92 153-254 26-120 (399)
388 4a74_A DNA repair and recombin 44.4 11 0.00037 36.2 2.7 17 162-178 25-41 (231)
389 3fmp_B ATP-dependent RNA helic 44.4 4.7 0.00016 44.1 0.0 70 196-276 333-406 (479)
390 1f2t_A RAD50 ABC-ATPase; DNA d 43.9 13 0.00043 33.7 2.9 22 165-188 26-47 (149)
391 2r62_A Cell division protease 43.7 5.6 0.00019 39.6 0.5 18 162-179 44-61 (268)
392 1tev_A UMP-CMP kinase; ploop, 43.6 9.4 0.00032 35.5 2.0 17 163-179 4-20 (196)
393 2c95_A Adenylate kinase 1; tra 43.5 9.9 0.00034 35.5 2.2 18 161-178 8-25 (196)
394 1gvn_B Zeta; postsegregational 43.3 8.8 0.0003 39.0 1.9 15 164-178 35-49 (287)
395 3d8b_A Fidgetin-like protein 1 43.2 9.1 0.00031 40.2 2.0 17 162-178 117-133 (357)
396 3b6e_A Interferon-induced heli 43.0 15 0.00051 34.6 3.4 72 369-444 81-168 (216)
397 1nks_A Adenylate kinase; therm 43.0 9.3 0.00032 35.4 1.9 14 165-178 4-17 (194)
398 2i3b_A HCR-ntpase, human cance 42.5 14 0.00049 34.9 3.1 41 269-312 103-145 (189)
399 3b9q_A Chloroplast SRP recepto 42.2 12 0.00042 38.3 2.8 26 162-189 100-125 (302)
400 4akg_A Glutathione S-transfera 42.1 21 0.00071 47.6 5.4 47 132-179 890-940 (2695)
401 1zuh_A Shikimate kinase; alpha 41.7 10 0.00035 34.6 1.9 17 163-179 8-24 (168)
402 3qf7_A RAD50; ABC-ATPase, ATPa 41.7 9.9 0.00034 40.1 2.0 16 164-179 25-40 (365)
403 2px0_A Flagellar biosynthesis 41.7 21 0.00071 36.4 4.4 18 162-179 105-122 (296)
404 3asz_A Uridine kinase; cytidin 41.6 13 0.00044 35.3 2.7 23 163-187 7-29 (211)
405 1via_A Shikimate kinase; struc 41.5 12 0.00039 34.5 2.3 16 164-179 6-21 (175)
406 3gk5_A Uncharacterized rhodane 41.0 18 0.0006 30.6 3.2 37 369-405 54-90 (108)
407 2v54_A DTMP kinase, thymidylat 41.0 11 0.00037 35.5 2.0 18 161-178 3-20 (204)
408 2r2a_A Uncharacterized protein 40.9 13 0.00044 35.6 2.5 15 165-179 8-22 (199)
409 3fb4_A Adenylate kinase; psych 40.7 11 0.00038 36.0 2.0 15 165-179 3-17 (216)
410 1zd8_A GTP:AMP phosphotransfer 40.7 11 0.00036 36.6 1.9 17 162-178 7-23 (227)
411 1qf9_A UMP/CMP kinase, protein 40.7 11 0.00037 35.0 1.9 15 164-178 8-22 (194)
412 3uie_A Adenylyl-sulfate kinase 40.6 9.9 0.00034 36.0 1.7 18 161-178 24-41 (200)
413 1xjc_A MOBB protein homolog; s 40.5 24 0.00082 32.8 4.2 22 165-187 7-28 (169)
414 3foj_A Uncharacterized protein 40.5 18 0.00062 29.9 3.1 37 369-405 55-91 (100)
415 3lnc_A Guanylate kinase, GMP k 40.4 9.2 0.00031 37.1 1.4 18 161-178 26-43 (231)
416 2bwj_A Adenylate kinase 5; pho 40.4 11 0.00037 35.3 1.9 17 162-178 12-28 (199)
417 3l9o_A ATP-dependent RNA helic 40.4 34 0.0012 41.7 6.7 65 369-444 226-296 (1108)
418 3h75_A Periplasmic sugar-bindi 40.1 3E+02 0.01 27.6 16.9 183 197-396 4-230 (350)
419 1nij_A Hypothetical protein YJ 39.8 16 0.00055 37.6 3.3 14 165-178 7-20 (318)
420 1cr0_A DNA primase/helicase; R 39.7 23 0.0008 35.6 4.5 19 161-179 34-52 (296)
421 2cdn_A Adenylate kinase; phosp 39.6 7.9 0.00027 36.6 0.8 16 163-178 21-36 (201)
422 1in4_A RUVB, holliday junction 39.6 13 0.00045 38.5 2.6 16 163-178 52-67 (334)
423 2iyv_A Shikimate kinase, SK; t 39.6 14 0.00047 34.2 2.5 17 163-179 3-19 (184)
424 1e6c_A Shikimate kinase; phosp 39.6 12 0.00041 34.1 2.0 16 163-178 3-18 (173)
425 1iy2_A ATP-dependent metallopr 39.5 11 0.00039 37.6 2.0 51 124-178 36-89 (278)
426 3pxg_A Negative regulator of g 39.5 15 0.00052 40.1 3.2 17 162-178 201-217 (468)
427 2plr_A DTMP kinase, probable t 39.4 9.9 0.00034 35.9 1.5 17 162-178 4-20 (213)
428 1z5z_A Helicase of the SNF2/RA 39.3 80 0.0027 31.4 8.3 94 170-279 92-191 (271)
429 3dl0_A Adenylate kinase; phosp 39.1 12 0.00041 35.7 2.0 15 165-179 3-17 (216)
430 2r8r_A Sensor protein; KDPD, P 38.9 23 0.00079 34.6 4.0 25 164-189 8-32 (228)
431 2jaq_A Deoxyguanosine kinase; 38.9 12 0.00041 35.0 2.0 14 165-178 3-16 (205)
432 3h1t_A Type I site-specific re 38.9 76 0.0026 35.4 9.0 78 196-280 439-526 (590)
433 1aky_A Adenylate kinase; ATP:A 38.9 12 0.00042 35.8 2.1 18 162-179 4-21 (220)
434 1zak_A Adenylate kinase; ATP:A 38.9 13 0.00045 35.7 2.3 18 162-179 5-22 (222)
435 2cvh_A DNA repair and recombin 38.8 13 0.00045 35.3 2.3 18 162-179 20-37 (220)
436 1ukz_A Uridylate kinase; trans 38.7 12 0.00043 35.2 2.0 15 164-178 17-31 (203)
437 3mwy_W Chromo domain-containin 38.6 1.5E+02 0.005 34.6 11.7 114 196-323 572-697 (800)
438 2zr9_A Protein RECA, recombina 38.2 24 0.00082 36.9 4.3 37 162-204 61-97 (349)
439 1u94_A RECA protein, recombina 38.0 25 0.00085 36.9 4.4 37 162-204 63-99 (356)
440 1xp8_A RECA protein, recombina 37.9 23 0.00079 37.3 4.1 38 162-205 74-111 (366)
441 3f9v_A Minichromosome maintena 37.9 12 0.00043 42.2 2.2 15 164-178 329-343 (595)
442 2l82_A Designed protein OR32; 37.9 1.1E+02 0.0037 25.7 7.3 112 373-489 5-125 (162)
443 3p32_A Probable GTPase RV1496/ 37.8 2.8E+02 0.0095 28.5 12.6 16 164-179 81-96 (355)
444 2pez_A Bifunctional 3'-phospho 37.5 12 0.00041 34.6 1.6 17 162-178 5-21 (179)
445 1ak2_A Adenylate kinase isoenz 37.5 13 0.00044 36.2 2.0 18 162-179 16-33 (233)
446 2og2_A Putative signal recogni 37.4 15 0.00052 38.6 2.6 25 163-189 158-182 (359)
447 2if2_A Dephospho-COA kinase; a 37.3 13 0.00044 35.1 1.9 15 164-178 3-17 (204)
448 1wv9_A Rhodanese homolog TT165 37.3 25 0.00086 28.6 3.5 35 371-405 54-88 (94)
449 2pt5_A Shikimate kinase, SK; a 37.2 14 0.00046 33.6 2.0 14 165-178 3-16 (168)
450 3a4m_A L-seryl-tRNA(SEC) kinas 37.2 13 0.00045 36.9 2.0 16 163-178 5-20 (260)
451 1cke_A CK, MSSA, protein (cyti 37.2 13 0.00046 35.6 2.0 16 163-178 6-21 (227)
452 3auy_A DNA double-strand break 37.1 16 0.00055 38.4 2.8 25 165-191 28-52 (371)
453 2yvu_A Probable adenylyl-sulfa 37.0 12 0.00042 34.7 1.6 17 162-178 13-29 (186)
454 2vli_A Antibiotic resistance p 36.9 11 0.00039 34.6 1.4 18 162-179 5-22 (183)
455 2bbw_A Adenylate kinase 4, AK4 36.8 14 0.00046 36.3 2.0 17 162-178 27-43 (246)
456 3eme_A Rhodanese-like domain p 36.6 17 0.0006 30.2 2.4 37 369-405 55-91 (103)
457 1jjv_A Dephospho-COA kinase; P 36.5 14 0.00048 34.9 2.0 14 165-178 5-18 (206)
458 2pbr_A DTMP kinase, thymidylat 36.3 14 0.00047 34.3 1.9 14 165-178 3-16 (195)
459 2qt1_A Nicotinamide riboside k 36.1 14 0.00048 35.0 1.9 17 162-178 21-37 (207)
460 1htw_A HI0065; nucleotide-bind 35.8 17 0.00056 33.3 2.3 25 162-188 33-57 (158)
461 3hix_A ALR3790 protein; rhodan 35.8 31 0.0011 28.8 3.9 37 369-405 51-88 (106)
462 1e4v_A Adenylate kinase; trans 35.7 14 0.00049 35.2 1.9 15 165-179 3-17 (214)
463 1g41_A Heat shock protein HSLU 35.6 15 0.00053 39.7 2.4 17 162-178 50-66 (444)
464 2z0h_A DTMP kinase, thymidylat 35.2 15 0.00052 34.1 2.0 14 165-178 3-16 (197)
465 3sr0_A Adenylate kinase; phosp 35.1 17 0.00057 34.9 2.3 15 165-179 3-17 (206)
466 3tif_A Uncharacterized ABC tra 35.1 16 0.00054 35.9 2.1 24 161-186 30-53 (235)
467 3qks_A DNA double-strand break 35.0 19 0.00066 34.3 2.7 25 164-190 25-49 (203)
468 2wwf_A Thymidilate kinase, put 34.7 15 0.00052 34.7 1.9 18 161-178 9-26 (212)
469 3g5j_A Putative ATP/GTP bindin 34.6 35 0.0012 29.5 4.2 36 371-406 90-126 (134)
470 3tqc_A Pantothenate kinase; bi 34.6 49 0.0017 34.1 5.9 23 165-189 95-117 (321)
471 2f1r_A Molybdopterin-guanine d 34.3 13 0.00045 34.6 1.3 22 165-188 5-26 (171)
472 2xb4_A Adenylate kinase; ATP-b 34.1 16 0.00054 35.3 2.0 15 165-179 3-17 (223)
473 2r2a_A Uncharacterized protein 34.0 18 0.00061 34.6 2.3 40 272-311 88-132 (199)
474 1nn5_A Similar to deoxythymidy 34.0 17 0.00057 34.4 2.1 18 161-178 8-25 (215)
475 2p5t_B PEZT; postsegregational 33.3 13 0.00046 36.6 1.3 16 163-178 33-48 (253)
476 3aez_A Pantothenate kinase; tr 33.1 20 0.0007 36.8 2.7 24 164-189 92-115 (312)
477 4h1g_A Maltose binding protein 33.0 23 0.00078 41.0 3.4 26 154-179 453-480 (715)
478 1uf9_A TT1252 protein; P-loop, 32.9 17 0.00057 34.0 1.9 15 164-178 10-24 (203)
479 3umf_A Adenylate kinase; rossm 32.6 19 0.00065 34.9 2.2 17 163-179 30-46 (217)
480 1np6_A Molybdopterin-guanine d 32.5 23 0.00079 33.0 2.8 23 164-187 8-30 (174)
481 3ipz_A Monothiol glutaredoxin- 32.4 1.3E+02 0.0044 25.1 7.4 46 369-414 16-67 (109)
482 3be4_A Adenylate kinase; malar 32.4 18 0.0006 34.7 2.0 17 162-178 5-21 (217)
483 1nlf_A Regulatory protein REPA 32.1 19 0.00063 36.1 2.2 21 159-179 27-47 (279)
484 3iwh_A Rhodanese-like domain p 31.9 23 0.0008 29.7 2.4 36 369-404 55-90 (103)
485 1odf_A YGR205W, hypothetical 3 31.8 23 0.00077 36.0 2.8 14 165-178 34-47 (290)
486 1rz3_A Hypothetical protein rb 31.7 18 0.00062 34.2 1.9 15 164-178 24-38 (201)
487 2fz4_A DNA repair protein RAD2 31.7 81 0.0028 30.5 6.8 46 370-428 133-179 (237)
488 1sgw_A Putative ABC transporte 31.6 22 0.00075 34.3 2.5 42 269-310 149-190 (214)
489 1vht_A Dephospho-COA kinase; s 31.5 19 0.00064 34.4 2.0 15 164-178 6-20 (218)
490 3tlx_A Adenylate kinase 2; str 31.2 19 0.00065 35.3 2.0 18 162-179 29-46 (243)
491 2cbz_A Multidrug resistance-as 31.1 20 0.00068 35.2 2.1 18 161-178 30-47 (237)
492 3pxi_A Negative regulator of g 31.0 24 0.00082 41.1 3.2 17 162-178 201-217 (758)
493 3m6a_A ATP-dependent protease 30.9 18 0.00062 40.4 2.0 26 161-188 107-132 (543)
494 4e22_A Cytidylate kinase; P-lo 30.2 20 0.00069 35.4 2.0 17 162-178 27-43 (252)
495 4akg_A Glutathione S-transfera 30.2 19 0.00066 47.9 2.3 20 159-178 1264-1283(2695)
496 1gtv_A TMK, thymidylate kinase 30.0 12 0.00042 35.4 0.4 14 165-178 3-16 (214)
497 2pze_A Cystic fibrosis transme 29.9 21 0.00073 34.7 2.1 18 161-178 33-50 (229)
498 3io5_A Recombination and repai 29.9 43 0.0015 34.6 4.5 41 164-208 30-70 (333)
499 2fwr_A DNA repair protein RAD2 29.8 50 0.0017 35.5 5.3 45 370-427 133-178 (472)
500 2ghi_A Transport protein; mult 29.2 22 0.00076 35.4 2.1 19 161-179 45-63 (260)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6e-60 Score=528.08 Aligned_cols=364 Identities=33% Similarity=0.548 Sum_probs=324.9
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--CCCCcE
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIR 198 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~--~~~~~~ 198 (729)
+.+..+|.+++|++.++++|..+||..|||+|.++||.++.|+|++++|+||||||++|++|++++++.... ...+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 334678999999999999999999999999999999999999999999999999999999999999886542 234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
+|||+|||+||.|+++.+.+++...++++.+++||.....+...+..+++|+|+||++|++++.+. .+.+.++++||||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEc
Confidence 999999999999999999999988889999999999988888888889999999999999999875 5678999999999
Q ss_pred CcchhhcCChHHHHHHHHHhc--CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhh
Q 004808 279 EADRLLELGFSAEIHELVRLC--PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~--~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (729)
|||+|++++|...+..++..+ +..+|+++||||+++.+..++..++.++..+.+.........+.+.+..+.. ..
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~ 287 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK---YA 287 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG---GG
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc---HH
Confidence 999999999999999999875 6789999999999999999999999999888876665556667777666543 34
Q ss_pred HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 357 k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
+...+..++.... .++||||+++..++.++.+|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 288 k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi 366 (434)
T 2db3_A 288 KRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 366 (434)
T ss_dssp HHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc
Confidence 5555666665544 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEecc-CcHHHHHHHHHHh
Q 004808 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRA 489 (729)
Q Consensus 437 ~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~-~d~~~l~~i~~~~ 489 (729)
|+|++||+||+|.++..|+||+|||||+|+.|.|++|+++ .+..++..|.+.+
T Consensus 367 ~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 367 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 4666666665544
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.2e-56 Score=496.94 Aligned_cols=369 Identities=31% Similarity=0.520 Sum_probs=333.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..++++|||+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 112 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQALILA 112 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---cCCceEEEEc
Confidence 4579999999999999999999999999999999999999999999999999999999999876432 2345799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+..+++|||||||++
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEccHHHH
Confidence 9999999999999999988899999999999988887888888999999999999998875 567889999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
++++|...+..++..+++..|++++|||+++.+..++..++..|..+...........+.+.+..+... ..+...+..
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~ 269 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE--EWKFDTLCD 269 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--THHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--HhHHHHHHH
Confidence 999999999999999999999999999999998888888888888777655555556677776665432 335566777
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 443 (729)
++......++||||+++..++.+...|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++||
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE
Confidence 77777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhh
Q 004808 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~ 498 (729)
+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.|.+.++..+....+
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 350 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred EECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999999999999999999999999998877765443
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-56 Score=494.12 Aligned_cols=365 Identities=35% Similarity=0.552 Sum_probs=319.9
Q ss_pred CCccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--------
Q 004808 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-------- 192 (729)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-------- 192 (729)
+.+..+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.++....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 345667999999999999999999999999999999999999999999999999999999999998875331
Q ss_pred -------CCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccC
Q 004808 193 -------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265 (729)
Q Consensus 193 -------~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~ 265 (729)
....+++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|..++...
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~- 169 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG- 169 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC-
Confidence 123467999999999999999999999888899999999999988888888888999999999999998775
Q ss_pred ccCCCCeeEEEEeCcchhhcCChHHHHHHHHHh--cCc--CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCC
Q 004808 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341 (729)
Q Consensus 266 ~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~--~~~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~ 341 (729)
.+.+..+++|||||||++++++|...+..++.. ++. ..|+++||||+++.+..++..++..+..+...........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 567899999999999999999999999998874 333 6799999999999999999999999888777655555666
Q ss_pred ceeEEEEeehhhhhhHHHHHHHHhhcc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 004808 342 LTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (729)
Q Consensus 342 l~~~~~~~~~~~~~~k~~~l~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 420 (729)
+.+.++.+.. ..+...+..++... .+.++||||+++..++.++.+|...++.+..+||++++.+|..+++.|++|+
T Consensus 250 i~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 250 ITQKVVWVEE---SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp EEEEEEECCG---GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred ceEEEEEecc---HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 7776665543 34455566666554 5678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 421 ~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
.+|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888887665
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.6e-55 Score=483.55 Aligned_cols=368 Identities=30% Similarity=0.515 Sum_probs=318.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.++++++.++++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... .+.++|||+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 115 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---KATQALVLA 115 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---CSCCEEEEC
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC---CceeEEEEe
Confidence 46799999999999999999999999999999999999999999999999999999999998875432 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
||++|+.|+++.+..++...++.+..++|+.........+. ..++|+|+||++|.+++... .+.+..+++|||||||+
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECHHH
Confidence 99999999999999999888999999999988777666665 67899999999999998774 56788899999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
+++++|...+..++..+++..|+++||||+++.+..+...++..|..+...........+.+.+..... ...+...+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 272 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER--EEWKLDTLC 272 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS--STTHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh--HHhHHHHHH
Confidence 999999999999999999999999999999999999999999999888776666666677777665543 234566777
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 77777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhh
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (729)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++..+....
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccC
Confidence 9999999999999999999999999999999999999999999998887776543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.4e-54 Score=474.62 Aligned_cols=366 Identities=33% Similarity=0.527 Sum_probs=324.3
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
...+|++++|++.++++|..+||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.... .++++|||
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil 95 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL---NKIQALIM 95 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc---CCccEEEE
Confidence 356799999999999999999999999999999999999999999999999999999999998875432 34579999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+||++|+.|+++.+..++...++.+..++|+.........+...++|+|+||++|..++... ...+..+++|||||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADK 174 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchH
Confidence 99999999999999999888889999999998887776777788999999999999988764 46688999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
+.+.+|...+..++..++...|++++|||++..+...+...+..|..+...... ....+.+.+..+. ...+...+.
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~k~~~l~ 250 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVE---ERQKLHCLN 250 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSC-BCTTEEEEEEECC---GGGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecccc-ccCCceeEEEEec---hhhHHHHHH
Confidence 998888999999999999999999999999999999998888888776554332 2334555544433 234556666
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred HHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 77777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchh
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (729)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.|.+.++..+...
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEEC
T ss_pred EEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999998877643
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.2e-54 Score=498.17 Aligned_cols=364 Identities=29% Similarity=0.486 Sum_probs=306.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-CCCCcEEEEEcCcHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTREL 208 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll--~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-~~~~~~vLIl~PtreL 208 (729)
|++.++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++.+..... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 78999999999999999999999999876542 2235689999999999
Q ss_pred HHHHHHHHHHHhh----ccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 209 AVQVHSMIEKIAQ----FTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 209 a~Q~~~~~~~l~~----~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|.|+++.+..+.. ...+.+..++|+.....+...+. ..++|+|+||++|++++.......+..+++|||||||+|
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999999864 34577888899988777666664 479999999999999997643456889999999999999
Q ss_pred hcCChHHHHHHHHHhcCc-------CceEEEEecccchhHHHHHHHhcCCCeEEecCCCC----CCCCCceeEEEEeehh
Q 004808 284 LELGFSAEIHELVRLCPK-------RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM 352 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~-------~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~----~~~~~l~~~~~~~~~~ 352 (729)
++|+|...+..++..++. .+|+++||||+++.+..++..++..|..+.+.... .....+.+.++.....
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 999999999888877643 67999999999999999998888887665543221 1223344444443321
Q ss_pred hhh--hHHHHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEEE
Q 004808 353 REV--NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (729)
Q Consensus 353 ~~~--~k~~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 426 (729)
... .....+...+. ...+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 111 11122222222 255789999999999999999999877 899999999999999999999999999999999
Q ss_pred cCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccch
Q 004808 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 427 Td~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (729)
|+++++|||+|+|++||+|++|.++..|+||+|||||+|+.|.|++|+++.+..+++.|.+..+..+..
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999987766654
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-53 Score=472.57 Aligned_cols=368 Identities=29% Similarity=0.461 Sum_probs=321.6
Q ss_pred CccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEE
Q 004808 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (729)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~v 199 (729)
....+|.+++|++.++++|..+||..|+|+|.++|+.++.+ +++++++|||+|||++|++|+++.+.... .++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~ 98 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQC 98 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---CCCCE
Confidence 34668999999999999999999999999999999999997 99999999999999999999998875432 34579
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 200 LILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 200 LIl~PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
|||+||++|+.|+++.+..+... .++.+....++...... ....++|+|+||++|.+++.+...+.+.++++||||
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 99999999999999999998876 47888888887654322 134579999999999999977556778899999999
Q ss_pred Ccchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhH
Q 004808 279 EADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (729)
Q Consensus 279 Eah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k 357 (729)
|||++++ +++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+..... ...+
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 253 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEK 253 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS--HHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC--hHHH
Confidence 9999996 789999999999999999999999999999999999999998888776665566666666665543 2345
Q ss_pred HHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCC
Q 004808 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (729)
Q Consensus 358 ~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~ 437 (729)
...+..++....++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 66677777777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC------ChhhHHHHhcccccCCCccEEEEEeccCc-HHHHHHHHHHhccccchhh
Q 004808 438 GVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRI 497 (729)
Q Consensus 438 ~v~~VI~~d~P~------s~~~yiQriGRagR~G~~G~~i~l~~~~d-~~~l~~i~~~~~~~~~~~~ 497 (729)
++++||+|++|+ +...|+||+||+||.|+.|.|++|+++.+ ...++.|.+.++..+....
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 999999999995 56899999999999999999999999764 8889999998877766433
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.3e-53 Score=463.00 Aligned_cols=364 Identities=32% Similarity=0.562 Sum_probs=318.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
.+|++++|++.++++|..+||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.... .++++|||+|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~P 84 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVMCH 84 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT---TCCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC---CCeeEEEECC
Confidence 5699999999999999999999999999999999999999999999999999999999998865432 3457999999
Q ss_pred cHHHHHHHHHHHHHHhhcc-CceEEEEecCCChHHHHHHHhc-CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~-~i~v~~~~gg~~~~~~~~~l~~-~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
|++|+.|+++.+..+.... ++++..++|+.........+.. .++|+|+||++|..++... .+.+..+++|||||||+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHHH
Confidence 9999999999999988764 8999999999887766665554 4799999999999988764 56789999999999999
Q ss_pred hhcC-ChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCC-CCCCceeEEEEeehhhhhhHHHH
Q 004808 283 LLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK-RPSTLTEEVVRIRRMREVNQEAV 360 (729)
Q Consensus 283 ll~~-gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~k~~~ 360 (729)
++++ ++...+..++...+...|++++|||+++.+..++..++..|..+....... ....+.+.+.... ...+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 240 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK---DNEKNRK 240 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC---GGGHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC---chhHHHH
Confidence 9985 788888999999999999999999999999999999999888776654332 2334555555443 2345556
Q ss_pred HHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCcc
Q 004808 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (729)
Q Consensus 361 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~ 440 (729)
+..++....++++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|+++
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 66777777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccC-cHHHHHHHHHHhccccch
Q 004808 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 441 ~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~~ 495 (729)
+||+|++|+++..|+||+||+||.|+.|.|++|+++. +..+++.+.+.++..+..
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 9999999999999999999999999999999999976 567888899888776654
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.9e-53 Score=491.28 Aligned_cols=364 Identities=29% Similarity=0.487 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-CCCCcEEEEEcCcHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTREL 208 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll--~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-~~~~~~vLIl~PtreL 208 (729)
|++.++++|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++++..... ...++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 67899999999999999999999999886542 2235679999999999
Q ss_pred HHHHHHHHHHHhhc----cCceEEEEecCCChHHHHHHH-hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 209 AVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 209 a~Q~~~~~~~l~~~----~~i~v~~~~gg~~~~~~~~~l-~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|.|+++.+..+... ..+.+..++|+.....+...+ ...++|+|+||++|++++.+.....+..+++|||||||+|
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 356788889998877666555 4579999999999999987653446888999999999999
Q ss_pred hcCChHHHHHHHHHhcC-------cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCC----CCCCCceeEEEEeehh
Q 004808 284 LELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM 352 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~-------~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~----~~~~~l~~~~~~~~~~ 352 (729)
++++|...+..++..++ ..+|+++||||+++.+..++..++..+..+...... .....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999999988877664 367999999999999999988888887665543221 1223344444443321
Q ss_pred hhh--hHHHHHHHHh-hccCCCeEEEEeCcHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEEE
Q 004808 353 REV--NQEAVLLSLC-SKTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (729)
Q Consensus 353 ~~~--~k~~~l~~l~-~~~~~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 426 (729)
... .....+...+ ....+.++||||+|+..++.++.+|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 111 1111222222 2355789999999999999999999876 899999999999999999999999999999999
Q ss_pred cCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccch
Q 004808 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 427 Td~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (729)
|+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+...++.|.+..+..+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887766654
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-52 Score=461.68 Aligned_cols=361 Identities=33% Similarity=0.513 Sum_probs=316.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEE
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLI 201 (729)
..+|++++|++.++++|..+||..|+|+|.++++.++.+ +++++++|||+|||++|++|++.++.... .++++||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~li 80 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---ASPQAIC 80 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---CSCCEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---CCccEEE
Confidence 468999999999999999999999999999999999998 99999999999999999999998875432 3457999
Q ss_pred EcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc
Q 004808 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (729)
|+||++|+.|+++.+..++.+.++.+..++++..... ....++|+|+||++|..++... .+.+..+++|||||||
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEAD 155 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChh
Confidence 9999999999999999998888888888887754322 2346899999999999988764 5678999999999999
Q ss_pred hhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHH
Q 004808 282 RLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360 (729)
Q Consensus 282 ~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~ 360 (729)
++.+ +++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+..... ...+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 233 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN--EADKFDV 233 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS--HHHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc--hHHHHHH
Confidence 9997 789999999999999999999999999999999999998888777665555555556665555432 3345566
Q ss_pred HHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCcc
Q 004808 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (729)
Q Consensus 361 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~ 440 (729)
+..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCC
Confidence 77777777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC------ChhhHHHHhcccccCCCccEEEEEeccC-cHHHHHHHHHHhc-cccc
Q 004808 441 TVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAG-SKLK 494 (729)
Q Consensus 441 ~VI~~d~P~------s~~~yiQriGRagR~G~~G~~i~l~~~~-d~~~l~~i~~~~~-~~~~ 494 (729)
+||+|++|+ ++..|+||+||+||.|+.|.|++|+.+. +..+++.+.+.++ ..+.
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 375 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMT 375 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCE
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceee
Confidence 999999999 9999999999999999999999999864 5667888888776 4443
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.1e-55 Score=497.66 Aligned_cols=365 Identities=29% Similarity=0.466 Sum_probs=180.4
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vL 200 (729)
...+|.+++|++.++++|..+||..|+|+|.++||.++.+ +++|++||||||||++|++|+++.+.... .++++|
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~l 166 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCL 166 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS---CSCCEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC---CCCcEE
Confidence 4567999999999999999999999999999999999997 99999999999999999999998875432 345799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 201 Il~PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
||+||++||.|+++.+..+..+ .++.+.+.+++...... ....++|+|+||++|++++.+...+.+.++++|||||
T Consensus 167 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred EEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 9999999999999999999876 46788888877654321 1345799999999999999776567789999999999
Q ss_pred cchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH
Q 004808 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 280 ah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
||++++ ++|...+..++..++..+|+++||||++..+..+...++..|..+...........+.+.++.+.. ...+.
T Consensus 244 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~ 321 (479)
T 3fmp_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEKF 321 (479)
T ss_dssp HHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------
T ss_pred HHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC--HHHHH
Confidence 999996 789999999999999999999999999999999999999998888776665555566666555432 23445
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~ 438 (729)
..+..++......++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 322 ~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 56666776667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCC------ChhhHHHHhcccccCCCccEEEEEeccCc-HHHHHHHHHHhccccch
Q 004808 439 VQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 439 v~~VI~~d~P~------s~~~yiQriGRagR~G~~G~~i~l~~~~d-~~~l~~i~~~~~~~~~~ 495 (729)
|++||+||+|. +...|+||+|||||.|+.|.|++|+++.+ ..+++.|.+.++..+..
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 465 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 465 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceE
Confidence 99999999995 56899999999999999999999998765 77888888877655543
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.4e-52 Score=451.97 Aligned_cols=358 Identities=35% Similarity=0.573 Sum_probs=315.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
..+|.+++|++.++++|..+||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+... .+.++|||
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~----~~~~~lil 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN----NGIEAIIL 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS----SSCCEEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc----CCCcEEEE
Confidence 457999999999999999999999999999999999998 6999999999999999999998876432 34579999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+||++|+.|+++.+..+....++.+..++|+.........+. .++|+|+||++|..++... .+.+..+++|||||||+
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchH
Confidence 999999999999999998888899999999988766655554 6899999999999988764 56688999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
+.+++|...+..++..+++..|++++|||+++.+......++..+..+.... ...+.+.+..+.. ..+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~l~ 231 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNE---NERFEALC 231 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCG---GGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeCh---HHHHHHHH
Confidence 9999999999999999999999999999999999888888887766554432 2245555554432 34455555
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++. ..+.++||||+++..+..++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 232 ~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 232 RLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 5555 456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccch
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (729)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.|.+..+.++..
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999999998877654
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.3e-54 Score=472.97 Aligned_cols=364 Identities=30% Similarity=0.507 Sum_probs=185.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+++|++.++++|..+||..|+|+|.++++.++.|+++++++|||+|||++|++|+++.+.... .++++|||+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---CSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC---CCCCEEEEc
Confidence 45699999999999999999999999999999999999999999999999999999999998875432 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||++|+.|+++.+..++...++.+..++|+.........+. .++|+|+||++|...+... .+.+..+++|||||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHh
Confidence 99999999999999998888899999999988766555444 6899999999999988764 566889999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
.+++|...+..++..+++..|++++|||+++.+..+...++..|..+...........+.+.+..+... ..+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE--EYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--hhHHHHHHH
Confidence 999999999999999999999999999999999999988999888877665544444555544443321 223445555
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 443 (729)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 66666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 444 ~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++..+.
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ---------------------------------------------------
T ss_pred EeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999888887665554
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-50 Score=434.38 Aligned_cols=335 Identities=38% Similarity=0.596 Sum_probs=289.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q 211 (729)
|++.|.++|..+||..|+|+|.++++.++.|+++++.+|||+|||++|++|+++. +.++|||+||++|+.|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999864 3369999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHH
Q 004808 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (729)
Q Consensus 212 ~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (729)
+++.+..++...++.+..++|+.........+. .++|+|+||++|..++... .+.+..+++|||||||++.+++|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKG-VIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTT-SCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcC-CcchhhCcEEEEEChHHhhccccHHH
Confidence 999999998888899999999988776655554 4899999999999988764 45678899999999999999999999
Q ss_pred HHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCC
Q 004808 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371 (729)
Q Consensus 292 i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~ 371 (729)
+..++...+...+++++|||+++.+...+..++..+..+... .....+.+.++.+.... ......+....+.
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 221 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW-----RSKVQALRENKDK 221 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-----HHHHHHHHTCCCS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-----HHHHHHHHhCCCC
Confidence 999999999999999999999999998888888877665432 22334445444443221 1122344556678
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCCh
Q 004808 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451 (729)
Q Consensus 372 ~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~ 451 (729)
++||||++...++.+...|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999998886 67899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhc
Q 004808 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490 (729)
Q Consensus 452 ~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~ 490 (729)
..|+||+||+||.|+.|.|++|+. .+...++.|.+.++
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999 88888888876543
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.6e-49 Score=457.86 Aligned_cols=343 Identities=16% Similarity=0.224 Sum_probs=279.9
Q ss_pred cccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 127 FMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 127 f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
+.++++++.+...|.. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. .+++|||+||
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------~g~~lVisP~ 93 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------DGFTLVICPL 93 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------SSEEEEECSC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------CCcEEEEeCH
Confidence 3458899999999998 79999999999999999999999999999999999999999752 3479999999
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH------hcCCCeEEECchHHH------HHHhccCccCCCCee
Q 004808 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL------RSMPDIVVATPGRMI------DHLRNSMSVDLDDLA 273 (729)
Q Consensus 206 reLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l------~~~~dIvI~TP~~L~------~~l~~~~~~~l~~i~ 273 (729)
++|+.|+++.+..+ ++.+..++|+.........+ ...++|+|+||++|. +.+.. .+.+..+.
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~ 167 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFT 167 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCc
Confidence 99999999999876 78888999988766543322 356899999999874 33332 34578999
Q ss_pred EEEEeCcchhhcCC--hHHHHHH--HHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEe
Q 004808 274 VLILDEADRLLELG--FSAEIHE--LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349 (729)
Q Consensus 274 ~lVvDEah~ll~~g--f~~~i~~--il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~ 349 (729)
+|||||||++++|| |...+.. ++....+..|+|+||||+++.+...+...+..+....+......+ .+...+...
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~ 246 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYYEVRQK 246 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEEEEEEC
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEEEEEeC
Confidence 99999999999998 6665544 344444578999999999999888777666654433333333222 343333222
Q ss_pred ehhhhhhHHHHHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 004808 350 RRMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (729)
Q Consensus 350 ~~~~~~~k~~~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 428 (729)
. .........+..++. ...+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 247 ~-~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 247 P-SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp C-SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred C-CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 1 112233344555554 33578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHH
Q 004808 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (729)
Q Consensus 429 ~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~ 486 (729)
++++|||+|+|++||+|++|.++..|+||+||+||.|.+|.|++|+++.|...+..+.
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877766554
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.6e-49 Score=438.07 Aligned_cols=345 Identities=18% Similarity=0.236 Sum_probs=273.5
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHH
Q 004808 136 LLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (729)
Q Consensus 136 l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~ 214 (729)
+...+.. +|| .|+|+|.++++.++.|+|+++++|||||||++|++|++..+ ..++++|||+||++||.|+++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------cCCCEEEEEECCHHHHHHHHH
Confidence 4444544 466 79999999999999999999999999999999999988765 134579999999999999999
Q ss_pred HHHHHhhccCceEEEEecCCCh---HHHHHHHhcC-CCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc-----
Q 004808 215 MIEKIAQFTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----- 285 (729)
Q Consensus 215 ~~~~l~~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~----- 285 (729)
.+..++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 83 ~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 83 RLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchh
Confidence 9999877 78999999999987 4455556555 99999999999988864 5677999999999987654
Q ss_pred ------CChHHH-HHHHHHhcC-----------cCceEEEEecc-cchhHH-HHHHHhcCCCeEEecCCCCCCCCCceeE
Q 004808 286 ------LGFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVD-ELIKLSLTKPLRLSADPSAKRPSTLTEE 345 (729)
Q Consensus 286 ------~gf~~~-i~~il~~~~-----------~~~q~il~SAT-l~~~v~-~l~~~~l~~p~~i~~~~~~~~~~~l~~~ 345 (729)
++|... +..++..++ ...|+++|||| ++..+. .+....+. +...........+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhe
Confidence 677777 778888877 88999999999 554443 22222222 1222222334455555
Q ss_pred EEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCcee-eccCCCCHHHHHHHHHHHhcCCceEE
Q 004808 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDFL 424 (729)
Q Consensus 346 ~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~l~~F~~g~~~vL 424 (729)
+... .+...+..++.. .+.++||||+++..++.++.+|...|+.+. .+||. +|. ++.|++|+.+||
T Consensus 235 ~~~~------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 235 RISS------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EESS------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eecc------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 5443 233344555544 458999999999999999999999999998 99995 344 999999999999
Q ss_pred EE----cCccccccCCCC-ccEEEEeCCC--CChhhHHHHhcccccCC----CccEEEEEeccCcHHHHHHHHHHhc--c
Q 004808 425 IA----TDVAARGLDIIG-VQTVINYACP--RDLTSYVHRVGRTARAG----REGYAVTFVTDNDRSLLKAIAKRAG--S 491 (729)
Q Consensus 425 Va----Td~~~rGlDi~~-v~~VI~~d~P--~s~~~yiQriGRagR~G----~~G~~i~l~~~~d~~~l~~i~~~~~--~ 491 (729)
|| |+++++|||+|+ |++||+|++| .++..|+||+||+||.| +.|.|++|+ .+...++.|.+.++ .
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~ 379 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIA 379 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccc
Confidence 99 999999999999 9999999999 99999999999999987 589999999 77888888888777 5
Q ss_pred ccchhhhhhhhHHHHHHHH
Q 004808 492 KLKSRIVAEQSITKWSKII 510 (729)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~i 510 (729)
.+....++...+..+...+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (414)
T 3oiy_A 380 EEEIIEEAEANWKELVHEV 398 (414)
T ss_dssp CCCEEEGGGCCHHHHHHHH
T ss_pred cccccccccccHHHHHHHH
Confidence 5555555554444433333
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.1e-48 Score=441.27 Aligned_cols=341 Identities=20% Similarity=0.268 Sum_probs=277.4
Q ss_pred CCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 125 NSFMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
.+|++++|++.+...|.. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. .+.+|||+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~ 72 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVS 72 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEEC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEEC
Confidence 468899999999999998 89999999999999999999999999999999999999999843 24699999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH----HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~----~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
|+++|+.|+++.+..+ ++.+..++++........ .....++|+|+||++|....... .+....+.+|||||
T Consensus 73 P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vViDE 147 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDE 147 (523)
T ss_dssp SCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESS
T ss_pred ChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEEEeC
Confidence 9999999999988864 778888888877554322 23456899999999996432111 23457899999999
Q ss_pred cchhhcCC--hHHHHHH---HHHhcCcCceEEEEecccchhHHHHHHH--hcCCCeEEecCCCCCCCCCceeEEEEeehh
Q 004808 280 ADRLLELG--FSAEIHE---LVRLCPKRRQTMLFSATLTEDVDELIKL--SLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (729)
Q Consensus 280 ah~ll~~g--f~~~i~~---il~~~~~~~q~il~SATl~~~v~~l~~~--~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~ 352 (729)
||++.+|| |...+.. +...+| ..+++++|||+++.+...+.. .+..|..+.. .... .++...+...
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r-~~l~~~v~~~--- 220 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDR-PNIRYMLMEK--- 220 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC--CCCC-TTEEEEEEEC---
T ss_pred ccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC--CCCC-CceEEEEEeC---
Confidence 99999998 5555443 344444 588999999999887654433 2344543332 1112 2333222221
Q ss_pred hhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccc
Q 004808 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (729)
Q Consensus 353 ~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~r 432 (729)
..+...+..++....+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 221 --~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 221 --FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp --SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 233445666666667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHH
Q 004808 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (729)
Q Consensus 433 GlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~ 488 (729)
|||+|+|++||+|++|.++..|+||+||+||.|.+|.|++|+++.|...++.+...
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998887776653
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-49 Score=449.69 Aligned_cols=361 Identities=28% Similarity=0.444 Sum_probs=264.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
.|...++++.+++.+...||..|+++|.++|+.++.| +++|+++|||||||++|++|++..+.... .++++|||+
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~---~~~~vLvl~ 196 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV---PKPQAICLA 196 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC---CSCCEEEEC
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC---CCceEEEEE
Confidence 4566688999999999999999999999999999998 99999999999999999999998875432 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|+++|+.|+++.+..+....++.+....++..... ....++|+|+||++|..++... .+.+..+++|||||||++
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~-~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNM 271 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEECCHHHH
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcC-CccccCCCEEEEechhhh
Confidence 99999999999999988777776666555543221 2346899999999999988764 567899999999999999
Q ss_pred hc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 284 LE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 284 l~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
.+ +++...+..++..++...|++++|||+++.+..+...++..+..+...........+.+.+..... ...+...+.
T Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~ 349 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQS--EEHKYNVLV 349 (508)
T ss_dssp TTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC----CHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCc--hHHHHHHHH
Confidence 87 789999999999999999999999999999999999999888877766555555555555554432 234556677
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 442 (729)
.++....++++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 350 ~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~V 429 (508)
T 3fho_A 350 ELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV 429 (508)
T ss_dssp HHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEE
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEE
Confidence 77777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC------CChhhHHHHhcccccCCCccEEEEEecc-CcHHHHHHHHHHhccccchh
Q 004808 443 INYACP------RDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLKSR 496 (729)
Q Consensus 443 I~~d~P------~s~~~yiQriGRagR~G~~G~~i~l~~~-~d~~~l~~i~~~~~~~~~~~ 496 (729)
|+|++| .++..|+||+||+||.|+.|.|++|+.+ .+...++.+.+.++..+...
T Consensus 430 I~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 430 VNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp EC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred EEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 999999 7899999999999999999999999985 56778888888887666543
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-47 Score=467.14 Aligned_cols=344 Identities=18% Similarity=0.201 Sum_probs=271.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
..|..+++++.+...+...++..|+|+|.++|+.++.|+++|++||||||||++|++|++..+. .++++||++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~P 235 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSP 235 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEES
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcC
Confidence 3566677777766666666777899999999999999999999999999999999999998873 3457999999
Q ss_pred cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
|++|+.|+++.+..+.. .+++++|+.+. ...++|+|+||++|++++... ...+.++++|||||||+|.
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTT
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhcc
Confidence 99999999999998654 67788888763 356899999999999999875 3457899999999999999
Q ss_pred cCChHHHHHHHHHhcCcCceEEEEecccchh--HHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEee---------hhh
Q 004808 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTED--VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMR 353 (729)
Q Consensus 285 ~~gf~~~i~~il~~~~~~~q~il~SATl~~~--v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~---------~~~ 353 (729)
+++|...+..++..++..+|+|+||||+++. +..++......|..+..... ++..+.++++... ...
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999999864 44666666666655544322 2333333221100 000
Q ss_pred -------------------------------------------hhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHH
Q 004808 354 -------------------------------------------EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390 (729)
Q Consensus 354 -------------------------------------------~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L 390 (729)
.......+...+......++||||+++..|+.++..|
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHH
Confidence 0112222333444455679999999999999999988
Q ss_pred hhcCCc---------------------------------------eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 004808 391 GLAALK---------------------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (729)
Q Consensus 391 ~~~~~~---------------------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~ 431 (729)
...++. ++.+||+|++.+|..++..|++|.++|||||++++
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla 541 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh
Confidence 654332 78999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCC--------ChhhHHHHhcccccCC--CccEEEEEeccC-cHHHHHHHHHH
Q 004808 432 RGLDIIGVQTVINYACPR--------DLTSYVHRVGRTARAG--REGYAVTFVTDN-DRSLLKAIAKR 488 (729)
Q Consensus 432 rGlDi~~v~~VI~~d~P~--------s~~~yiQriGRagR~G--~~G~~i~l~~~~-d~~~l~~i~~~ 488 (729)
+|||+|++++||+++.|+ ++..|+||+|||||.| ..|.|++++.+. +...+..+...
T Consensus 542 ~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp SCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred cCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 999999999999877654 5667999999999999 689999999876 55566666543
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.2e-45 Score=424.25 Aligned_cols=325 Identities=20% Similarity=0.210 Sum_probs=251.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+|| .|||+|..++|.++.|+ |+.++||+|||++|+||++.+.+. ++.|+||+||++||.|+++++..++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~------g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT------GKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT------SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5899 99999999999999999 999999999999999999855432 34599999999999999999999999
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhcc-----CccCCCCeeEEEEeCcchhh-cCC-------
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLL-ELG------- 287 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~ll-~~g------- 287 (729)
+.++++++++||.+...+ .+..++||+|+||++| .++|... ..+.+..+.++||||||+|| +.+
T Consensus 150 ~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 999999999999876543 3345689999999999 6666543 24568999999999999998 664
Q ss_pred --------hHHHHHHHHHhcC---------cCceEE-----------------EEecccchh---HHHHHH--HhcCC-C
Q 004808 288 --------FSAEIHELVRLCP---------KRRQTM-----------------LFSATLTED---VDELIK--LSLTK-P 327 (729)
Q Consensus 288 --------f~~~i~~il~~~~---------~~~q~i-----------------l~SATl~~~---v~~l~~--~~l~~-p 327 (729)
|...+..|+..++ +.+|++ +||||++.- +...+. .++.. +
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 7788899999887 478888 999998743 333221 12211 1
Q ss_pred eEE-------ecCCCCC-----------------------------CCCCceeE--------------------------
Q 004808 328 LRL-------SADPSAK-----------------------------RPSTLTEE-------------------------- 345 (729)
Q Consensus 328 ~~i-------~~~~~~~-----------------------------~~~~l~~~-------------------------- 345 (729)
..+ .++.... ....+++.
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 011 0100000 00000000
Q ss_pred ----EEEee--------------hhhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 004808 346 ----VVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (729)
Q Consensus 346 ----~~~~~--------------~~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 405 (729)
++.++ ......+...+..++.. ..+.++||||+|+..++.|...|...|+++..|||++.
T Consensus 388 Y~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 388 YNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH 467 (844)
T ss_dssp HCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH
T ss_pred hCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc
Confidence 00000 01223455555555433 24678999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCccccccCCC--------CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccC
Q 004808 406 QAQRLEALELFRKQHVDFLIATDVAARGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (729)
Q Consensus 406 ~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~--------~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~ 477 (729)
+.+|..+...|+.| .||||||+|+||+||+ ++.+||||++|.+...|+||+|||||+|.+|.+++|++..
T Consensus 468 ~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~e 545 (844)
T 1tf5_A 468 EREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSME 545 (844)
T ss_dssp HHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred HHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHH
Confidence 88887666666655 6999999999999999 8899999999999999999999999999999999999987
Q ss_pred cH
Q 004808 478 DR 479 (729)
Q Consensus 478 d~ 479 (729)
|.
T Consensus 546 D~ 547 (844)
T 1tf5_A 546 DE 547 (844)
T ss_dssp SS
T ss_pred HH
Confidence 64
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.3e-46 Score=427.46 Aligned_cols=336 Identities=17% Similarity=0.178 Sum_probs=203.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
+...|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.||++.+..++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-cCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4457999999999999999999999999999999999999998876543 235679999999999999999999998888
Q ss_pred CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHH-HHHHh----
Q 004808 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH-ELVRL---- 298 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~-~il~~---- 298 (729)
++++..++|+.....+...+..+++|+|+||++|.+++.......+..+++|||||||++.++++...+. .++..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999877766666777899999999999999987533378999999999999999887544432 22222
Q ss_pred cCcCceEEEEecccch-----------hHHHHHHHhc------------------CCCeEEecCCCCCCCCCceeE----
Q 004808 299 CPKRRQTMLFSATLTE-----------DVDELIKLSL------------------TKPLRLSADPSAKRPSTLTEE---- 345 (729)
Q Consensus 299 ~~~~~q~il~SATl~~-----------~v~~l~~~~l------------------~~p~~i~~~~~~~~~~~l~~~---- 345 (729)
.++..|+++||||++. .+..+..... ..|...........+..+...
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 1356899999999953 1222222111 111111000000000000000
Q ss_pred ----------------EE-----Eee------hh----------------------------------------------
Q 004808 346 ----------------VV-----RIR------RM---------------------------------------------- 352 (729)
Q Consensus 346 ----------------~~-----~~~------~~---------------------------------------------- 352 (729)
+. .+. ..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 000 00
Q ss_pred ----------------------------------------------hhhhHHHHHHHHhhc----cCCCeEEEEeCcHHH
Q 004808 353 ----------------------------------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTKQA 382 (729)
Q Consensus 353 ----------------------------------------------~~~~k~~~l~~l~~~----~~~~~vLIF~~s~~~ 382 (729)
....+...|..++.. ..+.++||||+++..
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 001122233333322 457899999999999
Q ss_pred HHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCCCCccEEEEeCCCC
Q 004808 383 AHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPR 449 (729)
Q Consensus 383 ~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~ 449 (729)
++.|..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999765 5556667888999999999999999 9999999999999999999999999999999
Q ss_pred ChhhHHHHhcccccCCCccEEEEEeccCcHHHH
Q 004808 450 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (729)
Q Consensus 450 s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l 482 (729)
|+..|+||+|| ||. +.|.|++|+++.+....
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999 998 79999999998765433
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2e-45 Score=434.87 Aligned_cols=346 Identities=19% Similarity=0.225 Sum_probs=225.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 004808 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (729)
Q Consensus 137 ~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~ 216 (729)
..++..+||..|+|+|.+++++++.|+|+|+++|||+|||++|++|+++++...+.. .++++|||+||++|+.|+++.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT-CCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC-CCCeEEEEECCHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999988765432 2357999999999999999999
Q ss_pred HHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCCh-HHHHHHH
Q 004808 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF-SAEIHEL 295 (729)
Q Consensus 217 ~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf-~~~i~~i 295 (729)
..++...++++..++|+.....+...+..+++|+|+||++|.+++.......+..+++|||||||++.+... ...+..+
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 999877799999999998765555666678999999999999999875333688999999999999986552 2222223
Q ss_pred HHh-----cCcCceEEEEecccc-------hh-HHHHHHHh---------------------cCCCeEEecCCCCCCCC-
Q 004808 296 VRL-----CPKRRQTMLFSATLT-------ED-VDELIKLS---------------------LTKPLRLSADPSAKRPS- 340 (729)
Q Consensus 296 l~~-----~~~~~q~il~SATl~-------~~-v~~l~~~~---------------------l~~p~~i~~~~~~~~~~- 340 (729)
+.. .++..++|++|||+. .. +..+.... ...|.............
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 322 246789999999996 12 22222111 11111100000000000
Q ss_pred --------------------------------------------------------------------------------
Q 004808 341 -------------------------------------------------------------------------------- 340 (729)
Q Consensus 341 -------------------------------------------------------------------------------- 340 (729)
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence
Q ss_pred ------------------------------CceeEEEE-------------eehhhhhhHHHHHHHHhhcc----CCCeE
Q 004808 341 ------------------------------TLTEEVVR-------------IRRMREVNQEAVLLSLCSKT----FTSKV 373 (729)
Q Consensus 341 ------------------------------~l~~~~~~-------------~~~~~~~~k~~~l~~l~~~~----~~~~v 373 (729)
.+.+.+.. ........+...+..++... .+.++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000 00000223444455555443 56799
Q ss_pred EEEeCcHHHHHHHHHHHhhcC----Cceeec--------cCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCCCCcc
Q 004808 374 IIFSGTKQAAHRLKILFGLAA----LKAAEL--------HGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQ 440 (729)
Q Consensus 374 LIF~~s~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~R~~~l~~F~~-g~~~vLVaTd~~~rGlDi~~v~ 440 (729)
||||+++..++.|..+|...+ +.+..+ ||+|++.+|..+++.|++ |..+|||||+++++|||+|+|+
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999887 888888 559999999999999998 9999999999999999999999
Q ss_pred EEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHH
Q 004808 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (729)
Q Consensus 441 ~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i 485 (729)
+||+||+|+|+..|+||+|| ||. +.|.|++|++..+......+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 997 78999999998876555544
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.6e-45 Score=419.11 Aligned_cols=335 Identities=19% Similarity=0.181 Sum_probs=231.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.|+|+|.++++.++.|+|+|+++|||+|||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++...+++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 6999999999999999999999999999999999999999876543 235679999999999999999999998888999
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHH-HHHHHHhc-----C
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE-IHELVRLC-----P 300 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~-i~~il~~~-----~ 300 (729)
+..++|+.....+...+..+++|+|+||++|..++.......+..+++|||||||++.+.+.... +..++... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 99999998777666667777999999999999999875433688999999999999998763332 22333332 2
Q ss_pred cCceEEEEecccchh-----------HHHHHHHhcCCCeEEecCCC------CCCCCCceeEEEEeeh------------
Q 004808 301 KRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADPS------AKRPSTLTEEVVRIRR------------ 351 (729)
Q Consensus 301 ~~~q~il~SATl~~~-----------v~~l~~~~l~~p~~i~~~~~------~~~~~~l~~~~~~~~~------------ 351 (729)
...|+++||||++.. +..+.. .+..+........ ....+......+....
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 457999999999542 112211 1221111110000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 004808 352 -------------------------------------------------------------------------------- 351 (729)
Q Consensus 352 -------------------------------------------------------------------------------- 351 (729)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ---------------------------------------------hhhhhHHHHHHHHhh----ccCCCeEEEEeCcHHH
Q 004808 352 ---------------------------------------------MREVNQEAVLLSLCS----KTFTSKVIIFSGTKQA 382 (729)
Q Consensus 352 ---------------------------------------------~~~~~k~~~l~~l~~----~~~~~~vLIF~~s~~~ 382 (729)
.....+...+..++. ...+.++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 000122233333332 2356899999999999
Q ss_pred HHHHHHHHhhcC------------CceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCCCCccEEEEeCCCC
Q 004808 383 AHRLKILFGLAA------------LKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPR 449 (729)
Q Consensus 383 ~~~l~~~L~~~~------------~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~ 449 (729)
++.|..+|...+ ..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999998763 344555669999999999999999 9999999999999999999999999999999
Q ss_pred ChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHH
Q 004808 450 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (729)
Q Consensus 450 s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i 485 (729)
|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 998 89999999998876655444
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.8e-44 Score=440.53 Aligned_cols=319 Identities=19% Similarity=0.255 Sum_probs=258.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+|| .|||+|.++||.++.|+|+|++||||||||++|+++++..+ ..++++|||+||++||.|+++.+..++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------~~~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------hcCCeEEEEechHHHHHHHHHHHHHhh-
Confidence 4788 59999999999999999999999999999998888877766 134579999999999999999999987
Q ss_pred ccCceEEEEecCCCh---HHHHHHHhcC-CCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh----------hc-C
Q 004808 222 FTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL----------LE-L 286 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l----------l~-~ 286 (729)
..++++..++|+.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||++ ++ +
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999987 5556666665 99999999999998864 56789999999999754 45 8
Q ss_pred ChHHH-HHHHHHhcC-----------cCceEEEEecc-cchhHHH-HHHHhcCCCeEEecCCCCCCCCCceeEEEEeehh
Q 004808 287 GFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVDE-LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (729)
Q Consensus 287 gf~~~-i~~il~~~~-----------~~~q~il~SAT-l~~~v~~-l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~ 352 (729)
||... +..++..+| ...|+++|||| .+..+.. +....+. +.+.........+.+.++..
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 88888 888998888 88999999999 4544432 2222222 22222333445566666544
Q ss_pred hhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCcee-eccCCCCHHHHHHHHHHHhcCCceEEEE----c
Q 004808 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDFLIA----T 427 (729)
Q Consensus 353 ~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~l~~F~~g~~~vLVa----T 427 (729)
.+...+..++.. .+.++||||+++..++.+..+|...|+.+. .+|| +|.+ ++.|++|+.+|||| |
T Consensus 296 ---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 ---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp ---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred ---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 233444555554 358999999999999999999999999998 9999 2555 99999999999999 9
Q ss_pred CccccccCCCC-ccEEEEeCCCC---------------------------------------------------------
Q 004808 428 DVAARGLDIIG-VQTVINYACPR--------------------------------------------------------- 449 (729)
Q Consensus 428 d~~~rGlDi~~-v~~VI~~d~P~--------------------------------------------------------- 449 (729)
+++++|||+|+ |++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999999 99999999998
Q ss_pred ---------------ChhhHHHHhcccccCCC----ccEEEEEeccCcHHHHHHHHHHhc
Q 004808 450 ---------------DLTSYVHRVGRTARAGR----EGYAVTFVTDNDRSLLKAIAKRAG 490 (729)
Q Consensus 450 ---------------s~~~yiQriGRagR~G~----~G~~i~l~~~~d~~~l~~i~~~~~ 490 (729)
++.+|+||+|||||.|. .|.+++++ .|...++.|.+..+
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 77899999999999653 34555554 78888888888764
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-44 Score=432.32 Aligned_cols=337 Identities=17% Similarity=0.187 Sum_probs=210.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 357889999999999999999999999999999999999999999876542 2356799999999999999999999988
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHH-HHHHHhc-
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRLC- 299 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i-~~il~~~- 299 (729)
..++++..++|+.....+...+..+++|+|+||++|.+++.......+..+++|||||||++.+.+....+ ..++...
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 88999999999988777677777889999999999999998753336889999999999999876543333 2333221
Q ss_pred ---CcCceEEEEecccch-----------hHHHHHHHh------------------cCCCeEEecCCCCCCCCCce----
Q 004808 300 ---PKRRQTMLFSATLTE-----------DVDELIKLS------------------LTKPLRLSADPSAKRPSTLT---- 343 (729)
Q Consensus 300 ---~~~~q~il~SATl~~-----------~v~~l~~~~------------------l~~p~~i~~~~~~~~~~~l~---- 343 (729)
.+..|+++||||+.. .+..+.... +..|...........+..+.
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 456899999999952 222222111 11111100000000000000
Q ss_pred ----------eE------EEEe-----eh------h--------------------------------------------
Q 004808 344 ----------EE------VVRI-----RR------M-------------------------------------------- 352 (729)
Q Consensus 344 ----------~~------~~~~-----~~------~-------------------------------------------- 352 (729)
.. +..+ .. .
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 0000 00 0
Q ss_pred ------------------------------------------------hhhhHHHHHHHHhhc----cCCCeEEEEeCcH
Q 004808 353 ------------------------------------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTK 380 (729)
Q Consensus 353 ------------------------------------------------~~~~k~~~l~~l~~~----~~~~~vLIF~~s~ 380 (729)
....+...|..++.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 001122233333332 4568999999999
Q ss_pred HHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCCCCccEEEEeCC
Q 004808 381 QAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYAC 447 (729)
Q Consensus 381 ~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLVaTd~~~rGlDi~~v~~VI~~d~ 447 (729)
..++.|..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999763 5566778899999999999999999 99999999999999999999999999999
Q ss_pred CCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 448 P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
|+|+..|+||+|| ||. +.|.|++|+++.+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999 998 7999999999876543
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.2e-44 Score=440.04 Aligned_cols=321 Identities=23% Similarity=0.314 Sum_probs=256.7
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
..+||. | |+|.++||.++.|+|+|++||||||||+ |++|++..+... ++++|||+||++||.|+++.+..++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-----~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-----GKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-----SCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-----CCeEEEEeccHHHHHHHHHHHHHHH
Confidence 348999 9 9999999999999999999999999998 899999887653 4579999999999999999999999
Q ss_pred hccCc----eEEEEecCCChHHH---HHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHH
Q 004808 221 QFTDI----RCCLVVGGLSTKMQ---ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293 (729)
Q Consensus 221 ~~~~i----~v~~~~gg~~~~~~---~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~ 293 (729)
...++ ++..++|+.+...+ ...+.. ++|+|+||++|++++.+ |..+++|||||||+|++++ ..+.
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~~~--~~~~ 195 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKAS--KNVD 195 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHTST--HHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhhcc--ccHH
Confidence 88888 89999999887663 333455 99999999999998765 6689999999999999854 5555
Q ss_pred HHHHhc-----------CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHH
Q 004808 294 ELVRLC-----------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (729)
Q Consensus 294 ~il~~~-----------~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 362 (729)
.++..+ +..+|+++||||+++. ..+...++..+..+.+.........+.+.++. ..+...+.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~------~~k~~~L~ 268 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN------DESISTLS 268 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES------CCCTTTTH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec------hhHHHHHH
Confidence 665555 4678999999999987 43333333333333333333334445555442 22333445
Q ss_pred HHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEE----cCccccccCCCC
Q 004808 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA----TDVAARGLDIIG 438 (729)
Q Consensus 363 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVa----Td~~~rGlDi~~ 438 (729)
.++... +.++||||+++..++.++..|... +.+..+||++. .+++.|++|+.+|||| |+++++|||+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 555443 578999999999999999999988 99999999984 7789999999999999 999999999999
Q ss_pred c-cEEEEeCCC---------------------------------------------------------------------
Q 004808 439 V-QTVINYACP--------------------------------------------------------------------- 448 (729)
Q Consensus 439 v-~~VI~~d~P--------------------------------------------------------------------- 448 (729)
| ++||+||+|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 6 999999999
Q ss_pred --CChhhHHHHhcccccCCCcc--EEEEEeccCcHHHHHHHHHHhcc
Q 004808 449 --RDLTSYVHRVGRTARAGREG--YAVTFVTDNDRSLLKAIAKRAGS 491 (729)
Q Consensus 449 --~s~~~yiQriGRagR~G~~G--~~i~l~~~~d~~~l~~i~~~~~~ 491 (729)
.++.+|+||+|||||+|..| .+++|+...+...++.|.+.++.
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987775 48888888899999999888764
No 27
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.1e-44 Score=414.74 Aligned_cols=324 Identities=17% Similarity=0.177 Sum_probs=228.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|. .|+|+|..++|.++.|+ |+.++||+|||++|++|++.+.+. +++++||+||++||.|+++++..++.+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~------g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT------SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 575 79999999999999998 999999999999999999866542 346999999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhh-cCC--------
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG-------- 287 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~g-------- 287 (729)
.++++++++||.+.. ...+..+++|+|+||++| .++|.... .+.+..+.++||||||+|+ +.+
T Consensus 142 lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 999999999998764 334455799999999999 78887642 3567999999999999998 543
Q ss_pred -------hHHHHHHHHHhcCc--------------------CceEE------------------------EEecccchhH
Q 004808 288 -------FSAEIHELVRLCPK--------------------RRQTM------------------------LFSATLTEDV 316 (729)
Q Consensus 288 -------f~~~i~~il~~~~~--------------------~~q~i------------------------l~SATl~~~v 316 (729)
|...+..|+..+++ .+|++ +||||++.-+
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~ 299 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM 299 (853)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH
Confidence 56777788877764 56654 8999976422
Q ss_pred HHH---H--HHhcC---------------------------------CC----eEEecCCCCCCCCCceeE---------
Q 004808 317 DEL---I--KLSLT---------------------------------KP----LRLSADPSAKRPSTLTEE--------- 345 (729)
Q Consensus 317 ~~l---~--~~~l~---------------------------------~p----~~i~~~~~~~~~~~l~~~--------- 345 (729)
..+ + ..++. .+ ..+.+.........+++.
T Consensus 300 ~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl 379 (853)
T 2fsf_A 300 HHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKL 379 (853)
T ss_dssp ---------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhh
Confidence 111 1 00010 01 111111111111111110
Q ss_pred ---------------------EEEee--------------hhhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHH
Q 004808 346 ---------------------VVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKI 388 (729)
Q Consensus 346 ---------------------~~~~~--------------~~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~ 388 (729)
++.++ ......+...+...+.. ..+.++||||+|+..++.|..
T Consensus 380 ~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 380 AGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp EEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 00000 01234455566655533 346789999999999999999
Q ss_pred HHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCc-----------------------------
Q 004808 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV----------------------------- 439 (729)
Q Consensus 389 ~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v----------------------------- 439 (729)
.|...|+++..|||.+.+.++..+...|+.| .|+||||+|+||+||+..
T Consensus 460 ~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 460 ELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 9999999999999999988888888899988 699999999999999873
Q ss_pred --------cEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 440 --------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 440 --------~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
.|||+|+.|.+...|+||+|||||+|.+|.+++|++..|.
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999998874
No 28
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.9e-43 Score=416.30 Aligned_cols=336 Identities=21% Similarity=0.271 Sum_probs=263.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
..+|++++|++.+.+.+..+||..|+|+|.++++. ++.+++++++||||||||++|.+++++.+... +.++||+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----GGKAIYV 81 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CSEEEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----CCeEEEE
Confidence 35699999999999999999999999999999999 78899999999999999999999999887643 3479999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+|+++||.|+++.+..+.. .++++..++|+....... ...++|+|+||++|..++.+. ...+.++++|||||||+
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHR-PEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHC-CGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCC-hhHhhccCEEEEechhh
Confidence 9999999999999965543 488999999986544321 236899999999999988874 33478999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-----------Eeeh
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----------RIRR 351 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~-----------~~~~ 351 (729)
+.++++...+..++..++ ..|+|++|||+++ ...+... +..+. +.. ..++..+...+. .+..
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKW-LGAEP-VAT---NWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHH-HTCEE-EEC---CCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHH-hCCCc-cCC---CCCCCCceEEEEecCCcccceeeecCc
Confidence 998888888888887776 7899999999975 3344433 33221 111 112222222211 1110
Q ss_pred -----hh-hhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcC-------------------------------
Q 004808 352 -----MR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA------------------------------- 394 (729)
Q Consensus 352 -----~~-~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~------------------------------- 394 (729)
.. .......+..++. .++++||||+++..++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 00 1122333333333 46899999999999999999887531
Q ss_pred -----CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----eC-------CCCChhhHHHHh
Q 004808 395 -----LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-------CPRDLTSYVHRV 458 (729)
Q Consensus 395 -----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~d-------~P~s~~~yiQri 458 (729)
..+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.+...|+||+
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 35889999999999999999999999999999999999999999999999 99 899999999999
Q ss_pred cccccCC--CccEEEEEeccCc
Q 004808 459 GRTARAG--REGYAVTFVTDND 478 (729)
Q Consensus 459 GRagR~G--~~G~~i~l~~~~d 478 (729)
|||||.| ..|.|+++++..+
T Consensus 388 GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 388 GRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTBCCTTTCSCEEEEEECSCGG
T ss_pred hhcCCCCCCCCceEEEEeCCch
Confidence 9999988 4799999998766
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.2e-43 Score=418.55 Aligned_cols=335 Identities=21% Similarity=0.269 Sum_probs=268.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
+|++++|++.+.+.+...||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.++||++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcC
Confidence 588999999999999999999999999999998 88899999999999999999999999888643 347999999
Q ss_pred cHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||++|..++.+. ...+.++++|||||||++.
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccC
Confidence 99999999999976554 48899999998664432 2346899999999999988774 3447899999999999999
Q ss_pred cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-----Eeehh---hhhh
Q 004808 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM---REVN 356 (729)
Q Consensus 285 ~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~-----~~~~~---~~~~ 356 (729)
++++...+..++..++...|+|++|||+++ ...+.. ++..+. +. ...++..+...+. .+... ....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~---~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL-IV---SDWRPVKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-EE---CCCCSSEEEEEEEETTEEEETTSCEEECSS
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-cC---CCCCCCcceEEEEeCCeeeccccchhhhhH
Confidence 988999999888888778999999999975 333433 333211 11 1112222222111 11100 0112
Q ss_pred HHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc---------------------------------CCceeeccCC
Q 004808 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------------------------------ALKAAELHGN 403 (729)
Q Consensus 357 k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~ 403 (729)
....+..++. .++++||||+++..++.++..|... ...+..+||+
T Consensus 226 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 226 WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 2333343333 3689999999999999998888642 1248999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----eC----CCCChhhHHHHhcccccCC--CccEEEEE
Q 004808 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA----CPRDLTSYVHRVGRTARAG--REGYAVTF 473 (729)
Q Consensus 404 ~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~d----~P~s~~~yiQriGRagR~G--~~G~~i~l 473 (729)
|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.++..|+||+|||||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999998 77 6899999999999999988 57999999
Q ss_pred eccCc
Q 004808 474 VTDND 478 (729)
Q Consensus 474 ~~~~d 478 (729)
+++.+
T Consensus 384 ~~~~~ 388 (720)
T 2zj8_A 384 STSDD 388 (720)
T ss_dssp CSSSC
T ss_pred ecCcc
Confidence 99887
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-43 Score=420.11 Aligned_cols=334 Identities=22% Similarity=0.284 Sum_probs=262.0
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 126 SFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 126 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
+|++|+ |++.+.+.+..+||..|+|+|.++++.++.|++++++||||||||++|.+|+++.+.. ++++||++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEe
Confidence 578888 9999999999999999999999999999999999999999999999999999988753 34699999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||++|..++.+. ...+..+++|||||||++
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEeeeeec
Confidence 999999999999965543 48899999998654322 1236899999999999988874 334789999999999999
Q ss_pred hcCChHHHHHHHHHhc---CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-----Eeehh---
Q 004808 284 LELGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM--- 352 (729)
Q Consensus 284 l~~gf~~~i~~il~~~---~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~-----~~~~~--- 352 (729)
.++++...+..++..+ .+..|+|++|||+++ ...+.. ++..+. +.. ..++..+...+. .+...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVS---DWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EEC---CCCSSCEEEEEECSSEEEEEETTEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccC---CCCCccceEEEeeCCeeeccCcchh
Confidence 9988887777666554 578999999999985 344443 333322 111 112222222211 11110
Q ss_pred --hhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc------------------------------CCceeec
Q 004808 353 --REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------ALKAAEL 400 (729)
Q Consensus 353 --~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------~~~~~~l 400 (729)
........+...+. .++++||||+++..++.++..|... +..+..+
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 225 TSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp EEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe
Confidence 00012333444333 4689999999999999998887642 2458889
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----eC---CCCChhhHHHHhcccccCC--CccEEE
Q 004808 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA---CPRDLTSYVHRVGRTARAG--REGYAV 471 (729)
Q Consensus 401 hg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~d---~P~s~~~yiQriGRagR~G--~~G~~i 471 (729)
||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.++..|+||+|||||.| ..|.|+
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999998 77 7899999999999999988 579999
Q ss_pred EEeccCc
Q 004808 472 TFVTDND 478 (729)
Q Consensus 472 ~l~~~~d 478 (729)
++++..+
T Consensus 383 ~l~~~~~ 389 (702)
T 2p6r_A 383 IIVGKRD 389 (702)
T ss_dssp EECCGGG
T ss_pred EEecCcc
Confidence 9999887
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-43 Score=427.07 Aligned_cols=337 Identities=17% Similarity=0.191 Sum_probs=210.0
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
-.|+..|+|+|.++|+.++.|+|+|+++|||+|||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 347889999999999999999999999999999999999999988765432 1255799999999999999999999988
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHH-HHHHHh--
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRL-- 298 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i-~~il~~-- 298 (729)
..++++..++|+.....+...+..+++|+|+||++|.+++.......+..+++|||||||++.+.+....+ ..++..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 78999999999987666555666779999999999999998754336888999999999999977543332 233322
Q ss_pred --cCcCceEEEEecccch-----------hHHHHHHHh------------------cCCCeEEecCCCCCCCCCce----
Q 004808 299 --CPKRRQTMLFSATLTE-----------DVDELIKLS------------------LTKPLRLSADPSAKRPSTLT---- 343 (729)
Q Consensus 299 --~~~~~q~il~SATl~~-----------~v~~l~~~~------------------l~~p~~i~~~~~~~~~~~l~---- 343 (729)
..+..|+++||||+.. .+..+.... +..|...........+..+.
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 1456899999999952 222222111 11111111000000000000
Q ss_pred --------------------eEE-EEeeh------h--------------------------------------------
Q 004808 344 --------------------EEV-VRIRR------M-------------------------------------------- 352 (729)
Q Consensus 344 --------------------~~~-~~~~~------~-------------------------------------------- 352 (729)
... ..+.. .
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000 00000 0
Q ss_pred ------------------------------------------------hhhhHHHHHHHHhhc----cCCCeEEEEeCcH
Q 004808 353 ------------------------------------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTK 380 (729)
Q Consensus 353 ------------------------------------------------~~~~k~~~l~~l~~~----~~~~~vLIF~~s~ 380 (729)
....+...|..++.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 001122223333332 3468999999999
Q ss_pred HHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCCCCccEEEEeCC
Q 004808 381 QAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYAC 447 (729)
Q Consensus 381 ~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLVaTd~~~rGlDi~~v~~VI~~d~ 447 (729)
..++.|..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999876 5556667889999999999999999 99999999999999999999999999999
Q ss_pred CCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 448 P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
|+|+..|+||+|| ||. +.|.|++|++..+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp CSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 9999999999999 998 7899999998876543
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2e-42 Score=398.59 Aligned_cols=327 Identities=20% Similarity=0.230 Sum_probs=254.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 142 ~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
.+|+ .|+|+|..++|.++.|+ |+.++||+|||++|+||++...+. +..|+||+||++||.|+++++..++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA------GNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT------TSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4798 89999999999999998 999999999999999999755443 23599999999999999999999999
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhh-c---------
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-E--------- 285 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~--------- 285 (729)
+.++++++++||.+.... .+..++||+|+||++| .++|.... .+.+..+.++||||||+|| +
T Consensus 178 ~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 999999999999876433 3444689999999999 78887542 4568899999999999998 4
Q ss_pred ------CChHHHHHHHHHhcC---------cCceEE-----------------EEecccch---hHHHHHH--HhcCC--
Q 004808 286 ------LGFSAEIHELVRLCP---------KRRQTM-----------------LFSATLTE---DVDELIK--LSLTK-- 326 (729)
Q Consensus 286 ------~gf~~~i~~il~~~~---------~~~q~i-----------------l~SATl~~---~v~~l~~--~~l~~-- 326 (729)
++|...+..|+..++ +.+|++ +||||++. .+...+. ..+..
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 358889999999998 788999 99999875 3332221 12221
Q ss_pred ------CeEEecCCCCC-----------------------------CCCCcee-E-------------------------
Q 004808 327 ------PLRLSADPSAK-----------------------------RPSTLTE-E------------------------- 345 (729)
Q Consensus 327 ------p~~i~~~~~~~-----------------------------~~~~l~~-~------------------------- 345 (729)
+..+.++.... ....+++ .
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 11111111000 0000110 0
Q ss_pred ----EEEeeh--------------hhhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 004808 346 ----VVRIRR--------------MREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (729)
Q Consensus 346 ----~~~~~~--------------~~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 405 (729)
++.++. .....+...+...+.. ..+.++||||+|+..++.|...|...|+++..|||.+.
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 000000 1123455555554432 24678999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCccccccCCCCc----------------------------------------------
Q 004808 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV---------------------------------------------- 439 (729)
Q Consensus 406 ~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v---------------------------------------------- 439 (729)
+.++..+...|+.| .|+|||++++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88887777888877 699999999999999975
Q ss_pred ------cEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 440 ------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 440 ------~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
.|||+|+.|.|...|+||+|||||.|.+|.+++|++..|..+
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999999887543
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.4e-42 Score=385.33 Aligned_cols=324 Identities=20% Similarity=0.246 Sum_probs=249.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.|+|+|.++++.++.+ ++|+++|||+|||++++++++..+.. .+.++|||+||++|+.||.+.+..+...+..+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 6999999999999999 99999999999999999999887752 23469999999999999999999886555668
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEE
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~i 306 (729)
+..++|+....... .+...++|+|+||+.|...+... .+.+..+++|||||||++.+......+...+....+..+++
T Consensus 83 v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 89999988765433 34456899999999999988764 56788999999999999987655556666666667788999
Q ss_pred EEecccchh---HHHHHHHhcCCCeEEecCCCCCC-----CCCceeEEEEeehh--------------------------
Q 004808 307 LFSATLTED---VDELIKLSLTKPLRLSADPSAKR-----PSTLTEEVVRIRRM-------------------------- 352 (729)
Q Consensus 307 l~SATl~~~---v~~l~~~~l~~p~~i~~~~~~~~-----~~~l~~~~~~~~~~-------------------------- 352 (729)
++|||+... +..++......++.+........ +.............
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999744 33333333222211111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 004808 353 -------------------------------------------------------------------------------- 352 (729)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (729)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred -------------------hhhhHHHHHHHHhhc----cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccC-------
Q 004808 353 -------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG------- 402 (729)
Q Consensus 353 -------------------~~~~k~~~l~~l~~~----~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg------- 402 (729)
....+...+..++.. ..+.++||||+++..+..+..+|...|+.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 011123334444443 46889999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 403 -NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 403 -~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
+|+..+|..+++.|++|..+|||||+++++|||+|++++||+||+|+|+..|+||+||+||.|. |.+++|+++.+.
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 999999998763
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-42 Score=413.14 Aligned_cols=324 Identities=19% Similarity=0.247 Sum_probs=259.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
++|. |+|+|.++|+.++.|+++|+++|||||||++|.++++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 4675 99999999999999999999999999999999999988763 235799999999999999999988654
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcC
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~ 302 (729)
.+++++|+.... ..++|+|+||++|..++.+. ...+..+++|||||||+|.++++...+..++..++..
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 678888887643 35799999999999988764 4568899999999999999999999999999999999
Q ss_pred ceEEEEecccchhHH--HHHHHhcCCCeEEecCCCCCCCCCceeEEEEee---------hhh------------------
Q 004808 303 RQTMLFSATLTEDVD--ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMR------------------ 353 (729)
Q Consensus 303 ~q~il~SATl~~~v~--~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~---------~~~------------------ 353 (729)
.|+|++|||+++... .++......+..+..... ++..+.+++.... ...
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 301 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhh
Confidence 999999999986432 344334455554443322 2333443332200 000
Q ss_pred -----------------h--------hhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCc------------
Q 004808 354 -----------------E--------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK------------ 396 (729)
Q Consensus 354 -----------------~--------~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~------------ 396 (729)
. ......+...+......++||||+++..++.++..|...++.
T Consensus 302 ~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 381 (1010)
T 2xgj_A 302 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIF 381 (1010)
T ss_dssp ---------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 0 111122333334444568999999999999999998765442
Q ss_pred ---------------------------eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----e
Q 004808 397 ---------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----Y 445 (729)
Q Consensus 397 ---------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~ 445 (729)
++.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |
T Consensus 382 ~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kf 461 (1010)
T 2xgj_A 382 NNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW 461 (1010)
T ss_dssp HHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEE
T ss_pred HHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCccc
Confidence 778999999999999999999999999999999999999999999999 9
Q ss_pred CC----CCChhhHHHHhcccccCCC--ccEEEEEeccC-cHHHHHHHHH
Q 004808 446 AC----PRDLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIAK 487 (729)
Q Consensus 446 d~----P~s~~~yiQriGRagR~G~--~G~~i~l~~~~-d~~~l~~i~~ 487 (729)
|. |.++..|+||+|||||.|. .|.|++++++. +...+..+..
T Consensus 462 d~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 462 DGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp CSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred CCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 99 8999999999999999996 59999999876 6666666643
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.9e-43 Score=413.29 Aligned_cols=326 Identities=22% Similarity=0.246 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH-HHHHHHHhhccCc
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTDI 225 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~-~~~~~~l~~~~~i 225 (729)
.|+|+|.++++.++.|+++|+++|||+|||++|++|+++.+........+.++|||+||++|+.|+ ++.+..++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 699999999999999999999999999999999999998876543212235699999999999999 9999998654 48
Q ss_pred eEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhc-----cCccCCCCeeEEEEeCcchhhcCChH-HHHHHHHHh-
Q 004808 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN-----SMSVDLDDLAVLILDEADRLLELGFS-AEIHELVRL- 298 (729)
Q Consensus 226 ~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~-----~~~~~l~~i~~lVvDEah~ll~~gf~-~~i~~il~~- 298 (729)
++..++|+.........+...++|+|+||++|..++.. ...+.+..+++|||||||++...++. ..+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 99999999876655566668899999999999998842 22456789999999999998653322 222222211
Q ss_pred ---c---------CcCceEEEEecccchh-----------HHHHHHHhcCCCeEEecCC------CCCCCCCceeEEEEe
Q 004808 299 ---C---------PKRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADP------SAKRPSTLTEEVVRI 349 (729)
Q Consensus 299 ---~---------~~~~q~il~SATl~~~-----------v~~l~~~~l~~p~~i~~~~------~~~~~~~l~~~~~~~ 349 (729)
. .+.+|+|++|||+... +..+....-...+...... ....+ . ..+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p-~--~~~~~~ 242 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP-C--KKFAIA 242 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC-E--EEEEEE
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC-c--eEEEEc
Confidence 1 1567999999999862 2222222111000000000 00000 0 000000
Q ss_pred ehhh----------------------------------------------------------------------------
Q 004808 350 RRMR---------------------------------------------------------------------------- 353 (729)
Q Consensus 350 ~~~~---------------------------------------------------------------------------- 353 (729)
....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred --------------------------------------------------------hhhH----HHHHHHHhhccC-CCe
Q 004808 354 --------------------------------------------------------EVNQ----EAVLLSLCSKTF-TSK 372 (729)
Q Consensus 354 --------------------------------------------------------~~~k----~~~l~~l~~~~~-~~~ 372 (729)
...+ ...+...+.... +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000 011111122223 789
Q ss_pred EEEEeCcHHHHHHHHHHHhhc------CCceeeccCC--------CCHHHHHHHHHHHhcCCceEEEEcCccccccCCCC
Q 004808 373 VIIFSGTKQAAHRLKILFGLA------ALKAAELHGN--------LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (729)
Q Consensus 373 vLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~ 438 (729)
+||||+++..++.|..+|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCc
Q 004808 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (729)
Q Consensus 439 v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d 478 (729)
|++||+||+|+|+..|+||+||+||.| +.+++++...+
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999999976644 34444444343
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.3e-41 Score=405.53 Aligned_cols=326 Identities=17% Similarity=0.205 Sum_probs=253.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
++|. |+|+|.++|+.++.|+|+++++|||||||++|+++++..+. .++++||++||++|+.|+++.+..+.
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 3564 89999999999999999999999999999999888887653 34579999999999999999998753
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcC
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~ 302 (729)
.++.+..++|+... ...++|+|+||++|..++... ...+..+++|||||||++.+++|...+..++..+++.
T Consensus 107 ~~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 107 DDVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp --CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 47889999998753 245799999999999988764 4557899999999999999999999999999999999
Q ss_pred ceEEEEecccchhH--HHHHHHhcCCCeEEecCCCCCCCCCceeEEEE-------eeh----------------------
Q 004808 303 RQTMLFSATLTEDV--DELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-------IRR---------------------- 351 (729)
Q Consensus 303 ~q~il~SATl~~~v--~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~-------~~~---------------------- 351 (729)
.|+|++|||+++.. ..++......++.+... ..++..+.+.+.. +..
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~--~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIST--PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC--SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEec--CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 99999999998654 22222222233332221 1122223222211 000
Q ss_pred -------------------------------------------------------------hhhhhHHHHHHHHhhccCC
Q 004808 352 -------------------------------------------------------------MREVNQEAVLLSLCSKTFT 370 (729)
Q Consensus 352 -------------------------------------------------------------~~~~~k~~~l~~l~~~~~~ 370 (729)
.........+..++.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 0011123344555555666
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhcCC---------------------------------------ceeeccCCCCHHHHHH
Q 004808 371 SKVIIFSGTKQAAHRLKILFGLAAL---------------------------------------KAAELHGNLTQAQRLE 411 (729)
Q Consensus 371 ~~vLIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~lhg~~~~~~R~~ 411 (729)
.++||||+++..|+.++.+|...++ .+..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 8999999999999999999977655 4789999999999999
Q ss_pred HHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCC---------ChhhHHHHhcccccCC--CccEEEEEec--cCc
Q 004808 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAG--REGYAVTFVT--DND 478 (729)
Q Consensus 412 ~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~---------s~~~yiQriGRagR~G--~~G~~i~l~~--~~d 478 (729)
+++.|+.|.++|||||+++++|||+|+ .+||+++.|. ++..|+||+|||||.| ..|.|++++. ..+
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~ 495 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLS 495 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcch
Confidence 999999999999999999999999999 6666666655 9999999999999988 5788998883 456
Q ss_pred HHHHHHHHHH
Q 004808 479 RSLLKAIAKR 488 (729)
Q Consensus 479 ~~~l~~i~~~ 488 (729)
...++.+...
T Consensus 496 ~~~~~~~i~~ 505 (997)
T 4a4z_A 496 IATFKEVTMG 505 (997)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 7777776543
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.7e-40 Score=386.27 Aligned_cols=321 Identities=20% Similarity=0.215 Sum_probs=238.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 134 ~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g------~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
..+...+..+|| .||++|.++|+.++.+ .++|++|+||||||++|++|++..+.. +.++||++||++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------g~qvlvlaPtr~ 428 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------GFQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------TSCEEEECSCHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHH
Confidence 345556678999 8999999999999875 599999999999999999999988753 346999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCChHHHHH---HHhc-CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 208 La~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||.|+++.+..+....++++..++|+.+...... .+.. .++|+|+||+.|.+ .+.+.++++|||||+|++
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchh
Confidence 9999999999998878899999999988765432 2333 58999999998754 456789999999999996
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHH
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 363 (729)
.. .. ...+.......|+++||||+.+....+..........+...+.. ...+...++ .. ......+..
T Consensus 503 g~---~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~--r~~i~~~~~--~~---~~~~~l~~~ 570 (780)
T 1gm5_A 503 GV---KQ--REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG--RKEVQTMLV--PM---DRVNEVYEF 570 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS--CCCCEECCC--CS---STHHHHHHH
T ss_pred hH---HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC--CcceEEEEe--cc---chHHHHHHH
Confidence 32 11 11122233568999999998876554432211111111111111 111221111 11 111122222
Q ss_pred Hhhc-cCCCeEEEEeCcH--------HHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 004808 364 LCSK-TFTSKVIIFSGTK--------QAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (729)
Q Consensus 364 l~~~-~~~~~vLIF~~s~--------~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~ 431 (729)
+... ..+.+++|||++. ..+..+...|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 2221 2367899999965 346778888877 478999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCC-ChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 432 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 432 rGlDi~~v~~VI~~d~P~-s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
+|||+|++++||+|++|. +...|.||+||+||.|..|.|++++++.+.
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 999999999999999996 788999999999999999999999985443
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-38 Score=389.57 Aligned_cols=323 Identities=19% Similarity=0.199 Sum_probs=251.1
Q ss_pred CCCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhc----CC--CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 130 LNLSRPLLRAC-EALGYSKPTPIQAACIPLALT----GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 130 l~l~~~l~~~l-~~~g~~~pt~iQ~~~i~~ll~----g~--dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
++++..+...+ ..++|. |||+|.++|+.++. |+ |+|++++||+|||++|+++++..+. .+.++|||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvl 658 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVL 658 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEE
Confidence 34555555555 457886 79999999999987 66 9999999999999999888887653 24489999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH---HHhc-CCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
+||++||.|+++.+..+....++++..++|..+...... .+.. .++|+|+||+.|.. .+.+.++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~------~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS------DVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS------CCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC------CccccccceEEEe
Confidence 999999999999999877767888999888776554432 2333 58999999986632 4668899999999
Q ss_pred CcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH
Q 004808 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 358 (729)
|||++ ......++..++...++++||||+.+....+....+.++..+...+.. ...+...+..... .....
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~--r~~i~~~~~~~~~--~~i~~ 803 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDS--MVVRE 803 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--CBCEEEEEEECCH--HHHHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--ccccEEEEecCCH--HHHHH
Confidence 99994 233455666677789999999999887776665555444333222111 1122222222211 11111
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCC
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi 436 (729)
.++..+ ..++++||||++...++.++..|... ++.+..+||.|++.+|..++..|++|+.+|||||+++++|||+
T Consensus 804 ~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 804 AILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 222221 24689999999999999999999877 8899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCC-CCChhhHHHHhcccccCCCccEEEEEeccC
Q 004808 437 IGVQTVINYAC-PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (729)
Q Consensus 437 ~~v~~VI~~d~-P~s~~~yiQriGRagR~G~~G~~i~l~~~~ 477 (729)
|++++||+++. ++++..|+||+||+||.|+.|.|++++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999998 579999999999999999999999998764
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.9e-41 Score=390.23 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=234.4
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHH
Q 004808 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (729)
Q Consensus 130 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa 209 (729)
+++++.+++++... ...++|+|+.++|.++.|+|+|++||||||||++|++|+++.+... ++++|||+|||+||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-----RLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEcChHHHH
Confidence 56677766666543 4789999988999999999999999999999999999999998753 35799999999999
Q ss_pred HHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChH
Q 004808 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (729)
Q Consensus 210 ~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (729)
.|+++.+. +..+.+..+.... ....+..|.++|.+.|...+.. ...+.++++|||||||++ +.+|.
T Consensus 229 ~Qi~~~l~------~~~v~~~~~~l~~-----~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 229 AEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHTT------TSCEEECCTTSSC-----CCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHhc------CCceeEeccccee-----ccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-CccHH
Confidence 99988775 3333321111100 0112345677888888776665 345899999999999998 66777
Q ss_pred HHHHHHHHhcC-cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhcc
Q 004808 290 AEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368 (729)
Q Consensus 290 ~~i~~il~~~~-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 368 (729)
..+..++..++ +.+|+|+||||++..+..+.. .++..+.+.... + ..... ..+..+..
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--~-----------~~~~~---~ll~~l~~-- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--P-----------ERSWN---TGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--C-----------SSCCS---SSCHHHHH--
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--C-----------HHHHH---HHHHHHHh--
Confidence 77877877775 679999999999876542221 122222221110 0 00000 01111222
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEE------
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV------ 442 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~V------ 442 (729)
..+++||||+|+..++.++..|...++.+..|||. +|.++++.|++|+.+|||||+++++||||| |++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 26799999999999999999999999999999984 688899999999999999999999999997 9988
Q ss_pred --------------EEeCCCCChhhHHHHhcccccCCC-ccEEEEEec---cCcHHHHHHHHHHh
Q 004808 443 --------------INYACPRDLTSYVHRVGRTARAGR-EGYAVTFVT---DNDRSLLKAIAKRA 489 (729)
Q Consensus 443 --------------I~~d~P~s~~~yiQriGRagR~G~-~G~~i~l~~---~~d~~~l~~i~~~~ 489 (729)
|+|++|.+..+|+||+|||||+|. .|.|++|++ +.+...+..|+..+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999964 899999998 77777777777653
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-38 Score=400.71 Aligned_cols=346 Identities=17% Similarity=0.203 Sum_probs=262.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 132 LSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
|..+..+++...+|..++|+|.++++.++. +.|++++||||||||++|.+|++..+...+ +.++|+|+||++||.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~----~~kavyi~P~raLa~ 986 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS----EGRCVYITPMEALAE 986 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT----TCCEEEECSCHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC----CCEEEEEcChHHHHH
Confidence 456778888888999999999999999986 468999999999999999999999988653 346999999999999
Q ss_pred HHHHHHHH-HhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccC-ccCCCCeeEEEEeCcchhhcCCh
Q 004808 211 QVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLELGF 288 (729)
Q Consensus 211 Q~~~~~~~-l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~-~~~l~~i~~lVvDEah~ll~~gf 288 (729)
|++..+.. ++...+++|+.++|+...... ....++|+||||++|..++++.. ...+.++++|||||+|.|.+. .
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-r 1062 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-N 1062 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-T
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-C
Confidence 99998865 555578999999998654432 33557999999999977776532 224788999999999988764 3
Q ss_pred HHHHHHH-------HHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHH---
Q 004808 289 SAEIHEL-------VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE--- 358 (729)
Q Consensus 289 ~~~i~~i-------l~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~--- 358 (729)
...+..+ ....++..|+|++|||+++ ..++.......+..+.......+|..+..++..+.........
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhh
Confidence 4443333 2345678999999999985 4445444333332222233344666666665544332211111
Q ss_pred --HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh----------------------------------cCCceeeccC
Q 004808 359 --AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL----------------------------------AALKAAELHG 402 (729)
Q Consensus 359 --~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~lhg 402 (729)
.....+.....+.++||||+|+..|+.++..|.. ....++.+||
T Consensus 1142 ~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1142 AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 1122233345578999999999999887665521 1245889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----e------CCCCChhhHHHHhcccccCCC--ccEE
Q 004808 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----Y------ACPRDLTSYVHRVGRTARAGR--EGYA 470 (729)
Q Consensus 403 ~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~------d~P~s~~~yiQriGRagR~G~--~G~~ 470 (729)
+|++.+|..+.+.|++|.++|||||+++++|||+|.+.+||. | ..|.++..|+||+|||||.|. .|.|
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999983 3 246789999999999999986 6999
Q ss_pred EEEeccCcHHHHHHHH
Q 004808 471 VTFVTDNDRSLLKAIA 486 (729)
Q Consensus 471 i~l~~~~d~~~l~~i~ 486 (729)
++++.+.+...++.+.
T Consensus 1302 vll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEGGGHHHHHHHT
T ss_pred EEEecchHHHHHHHHh
Confidence 9999998887777654
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.4e-39 Score=368.90 Aligned_cols=313 Identities=15% Similarity=0.125 Sum_probs=236.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCc
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i 225 (729)
..|+|+|.++++.++.++++|++++||+|||++|+++++..+... .+++|||+||++|+.|+++.+..+..++++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-----SSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-----CCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 379999999999999999999999999999999999888776532 237999999999999999999998777778
Q ss_pred eEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceE
Q 004808 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (729)
Q Consensus 226 ~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~ 305 (729)
.+..++|+.....+ +...++|+|+||+.|... ....+..+++|||||||++.+ ..+..++..++...++
T Consensus 187 ~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 187 MIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (510)
T ss_dssp GEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEE
T ss_pred ceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEE
Confidence 88999988765443 456789999999987543 134567899999999999875 4566777888888899
Q ss_pred EEEecccchhHHHHHH-HhcCCCeEEecCCCC------CCCCCceeEEEEeehh----------hh--------hhHHHH
Q 004808 306 MLFSATLTEDVDELIK-LSLTKPLRLSADPSA------KRPSTLTEEVVRIRRM----------RE--------VNQEAV 360 (729)
Q Consensus 306 il~SATl~~~v~~l~~-~~l~~p~~i~~~~~~------~~~~~l~~~~~~~~~~----------~~--------~~k~~~ 360 (729)
++||||++.....+.. ..+..+..+...... ..+..+....+..... .. ..+...
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 9999999766433221 112233332222110 0111111111111110 00 011222
Q ss_pred HHHHhhcc---CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc-CccccccCC
Q 004808 361 LLSLCSKT---FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLDI 436 (729)
Q Consensus 361 l~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-d~~~rGlDi 436 (729)
+..++... .+..+||||+ ...+..+...|...+..+..+||+|++.+|..+++.|++|+.+||||| +++++|||+
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi 414 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV 414 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc
Confidence 33333322 3456677776 888888999999988899999999999999999999999999999999 999999999
Q ss_pred CCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEec
Q 004808 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475 (729)
Q Consensus 437 ~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~ 475 (729)
|+|++||++++|+++..|+||+||+||.|..|.++++++
T Consensus 415 p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 415 KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999998774455544
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.4e-40 Score=366.97 Aligned_cols=287 Identities=16% Similarity=0.193 Sum_probs=216.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 144 GYSKPTPIQAACIPLALTGRDI-CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~g~dv-lv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
|+..|+|+|+ +||.++.++++ |+++|||||||++|++|++.++... ++++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-----RLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-----CCcEEEECCCHHHHHHHHHHhc-----
Confidence 7889999986 79999999988 8999999999999999999887653 3469999999999999988874
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHH-HhcCc
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV-RLCPK 301 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il-~~~~~ 301 (729)
++.+....+.... ....+..|.++|++.|..++.+ ...+.++++|||||||++ +.++...+..+. ...++
T Consensus 70 -g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp -TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred -Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3444332222211 1123457999999999988876 356889999999999987 333333222222 23456
Q ss_pred CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHH
Q 004808 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381 (729)
Q Consensus 302 ~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~ 381 (729)
.+|+++||||++..+..+ ....+..+..... .+.. .+ . . +...+.. ..+++||||+++.
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~~---~~---~-----~----~~~~l~~-~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPER---SW---N-----T----GFDWITD-YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCSS---CC---S-----S----SCHHHHH-CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCcc--CCch---hh---H-----H----HHHHHHh-CCCCEEEEcCCHH
Confidence 799999999998754322 2223332222110 1100 00 0 0 0111111 3569999999999
Q ss_pred HHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeC---------------
Q 004808 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------------- 446 (729)
Q Consensus 382 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d--------------- 446 (729)
.++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 47899999999999999999999999999 9999999
Q ss_pred -----CCCChhhHHHHhcccccCCC-ccEEEEEecc
Q 004808 447 -----CPRDLTSYVHRVGRTARAGR-EGYAVTFVTD 476 (729)
Q Consensus 447 -----~P~s~~~yiQriGRagR~G~-~G~~i~l~~~ 476 (729)
+|.+..+|+||+|||||.|. .|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.2e-38 Score=374.92 Aligned_cols=338 Identities=18% Similarity=0.195 Sum_probs=245.9
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLI 201 (729)
...+|.++++++.+.+.+...+ ..|+++|+.+|+.++.+ ++++++||||||||++ +|++........ ..+.+++|
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~-~~g~~ilv 145 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPH-LENTQVAC 145 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGG-GGTCEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhcccc-CCCceEEe
Confidence 4567999999999999999988 78999999999888865 6799999999999994 555522111111 12457999
Q ss_pred EcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc
Q 004808 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (729)
++|+|+||.|+++.+.... ++.+...+|+.... .......++|+|+|||+|...+.. ...+..+++|||||||
T Consensus 146 l~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHh---CCchhheecceecc--ccccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 9999999999987665432 33222222211000 000124578999999999988876 3568999999999999
Q ss_pred h-hhcCChH-HHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh-hhhHH
Q 004808 282 R-LLELGFS-AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQE 358 (729)
Q Consensus 282 ~-ll~~gf~-~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~k~ 358 (729)
. +++..+. ..+..++... +..|+|+||||++.. .+. .++..+..+.+.... ..+.+.+....... .....
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HHH-HHhcCCCcccccCcc---cceEEEEecCCchhHHHHHH
Confidence 5 6653332 3333444333 578999999999643 333 344444344432221 22333332221111 11122
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh-----------cCCceeeccCCCCHHHHHHHHHHHh-----cCCce
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-----------AALKAAELHGNLTQAQRLEALELFR-----KQHVD 422 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~R~~~l~~F~-----~g~~~ 422 (729)
..+..++....++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ .|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 2344444455678999999999999999999874 5788999999999999999999999 99999
Q ss_pred EEEEcCccccccCCCCccEEEEeCC------------------CCChhhHHHHhcccccCCCccEEEEEeccCcH
Q 004808 423 FLIATDVAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (729)
Q Consensus 423 vLVaTd~~~rGlDi~~v~~VI~~d~------------------P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~ 479 (729)
|||||+++++|||||+|++||++++ |.+...|+||+|||||. ++|.||+|+++.+.
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999999888 88999999999999998 79999999987654
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.4e-38 Score=397.97 Aligned_cols=338 Identities=18% Similarity=0.248 Sum_probs=255.4
Q ss_pred CCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-----CCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 144 GYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 144 g~~~pt~iQ~~~i~~ll~-g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-----~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
||..|+++|.+++|.++. ++|+|++||||||||++|.++++..+..... ...+.++|+|+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 7899999999999999999999999875321 1246689999999999999999999
Q ss_pred HHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCc-cCCCCeeEEEEeCcchhhcCChHHHHHHHH
Q 004808 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGFSAEIHELV 296 (729)
Q Consensus 218 ~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~-~~l~~i~~lVvDEah~ll~~gf~~~i~~il 296 (729)
......+++|..++|+....... ...++|+||||+++..++++... ..++.+++|||||+|.+-+ .....+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 88788899999999987654321 34689999999998655554321 2378999999999997654 4444444333
Q ss_pred -------HhcCcCceEEEEecccchhHHHHHHHhcCCC-eEEecCCCCCCCCCceeEEEEeehhhhhhHHHHH-----HH
Q 004808 297 -------RLCPKRRQTMLFSATLTEDVDELIKLSLTKP-LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL-----LS 363 (729)
Q Consensus 297 -------~~~~~~~q~il~SATl~~~v~~l~~~~l~~p-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l-----~~ 363 (729)
..++...|+|++|||+++ ..++....-..+ ..+.......+|..+.+.++.+...........+ ..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 346778999999999975 444544332221 1122233444677777776655433222222211 12
Q ss_pred HhhccCCCeEEEEeCcHHHHHHHHHHHhh-------------------------------------cCCceeeccCCCCH
Q 004808 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGNLTQ 406 (729)
Q Consensus 364 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~lhg~~~~ 406 (729)
+.....++++||||+|+..++.++..|.. ....++.+||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 22334467899999999888887776632 12357899999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE----eCC------CCChhhHHHHhcccccCCC--ccEEEEEe
Q 004808 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YAC------PRDLTSYVHRVGRTARAGR--EGYAVTFV 474 (729)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----~d~------P~s~~~yiQriGRagR~G~--~G~~i~l~ 474 (729)
.+|..+.+.|++|.++|||||+++++|||+|.+++||. |++ |-++..|+||+|||||.|. .|.+++++
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999985 543 4589999999999999874 69999999
Q ss_pred ccCcHHHHHHHH
Q 004808 475 TDNDRSLLKAIA 486 (729)
Q Consensus 475 ~~~d~~~l~~i~ 486 (729)
...+...+..+.
T Consensus 471 ~~~~~~~~~~ll 482 (1724)
T 4f92_B 471 SHGELQYYLSLL 482 (1724)
T ss_dssp ESTTCCHHHHHT
T ss_pred cchhHHHHHHHH
Confidence 988766655554
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.4e-38 Score=355.92 Aligned_cols=295 Identities=19% Similarity=0.236 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.|+|+|.++++.++.++++|++++||+|||++|++++... +.++||||||++|+.||++.+..| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~ 159 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGG----CGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhC----CCc
Confidence 6999999999999999999999999999999998887754 235999999999999999998873 677
Q ss_pred -EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceE
Q 004808 227 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (729)
Q Consensus 227 -v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~ 305 (729)
+..++|+... .++|+|+||+.|...+... ...+++|||||||++.+.+|.. ++..+ ...++
T Consensus 160 ~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 160 YVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred ceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 8888887643 4799999999998766431 2468899999999999887764 44444 35789
Q ss_pred EEEecccchh-------------------HHHHHHHhcCCCeE--EecCCCC------------------------CCCC
Q 004808 306 MLFSATLTED-------------------VDELIKLSLTKPLR--LSADPSA------------------------KRPS 340 (729)
Q Consensus 306 il~SATl~~~-------------------v~~l~~~~l~~p~~--i~~~~~~------------------------~~~~ 340 (729)
+++|||+... ...+...++..+.. +.+.... ....
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999731 22221111211111 0000000 0000
Q ss_pred CceeEEEEe---e---------------hhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccC
Q 004808 341 TLTEEVVRI---R---------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402 (729)
Q Consensus 341 ~l~~~~~~~---~---------------~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg 402 (729)
.+.+.+... . ......+...+..++....+.++||||++...++.+...|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 000000000 0 00112344556666666678899999999999999999874 668999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCc---cEEEEEeccC
Q 004808 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE---GYAVTFVTDN 477 (729)
Q Consensus 403 ~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~---G~~i~l~~~~ 477 (729)
+++..+|..+++.|++|..+|||||+++++|||+|++++||+|++|+|+..|+||+||+||.|.. ..+|.|++..
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999998843 3455566654
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.1e-39 Score=368.60 Aligned_cols=288 Identities=18% Similarity=0.196 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.+.++|..+++.+..+++++++||||||||++|++|+++. +.++||++|||+||.|+++.+... .+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------g~~vLVl~PTReLA~Qia~~l~~~---~g~~ 284 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKA---HGID 284 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------TCCEEEEESCHHHHHHHHHHHHHH---HSCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------CCeEEEEcchHHHHHHHHHHHHHH---hCCC
Confidence 3455666666666678999999999999999999988762 336999999999999998876654 3566
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCce--
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-- 304 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q-- 304 (729)
+...+|+.. +..+++|+|+||++|+ .+ ..+.+.++++||||||| +++.+|...+..++..++..+|
T Consensus 285 vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 285 PNIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CEEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred eeEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 777777754 4567899999999984 23 35778899999999995 5667788888999999988777
Q ss_pred EEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHH
Q 004808 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAH 384 (729)
Q Consensus 305 ~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~ 384 (729)
+++||||++..+. ...|....+..... ..+ ... . .... +....++++||||+++..++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i-~~~---~---~~~~-------l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALSNT--GEI-PFY---G---KAIP-------IEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECBSC--SSE-EET---T---EEEC-------GGGSSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeeccc--chh-HHH---H---hhhh-------hhhccCCcEEEEeCCHHHHH
Confidence 6777999987421 11111111100000 000 000 0 0000 12235789999999999999
Q ss_pred HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEE----------EeC--------
Q 004808 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----------NYA-------- 446 (729)
Q Consensus 385 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI----------~~d-------- 446 (729)
.++..|...++.+..+||+|++.+ |.++..+|||||+++++||||+ |++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 5567779999999999999997 99988 777
Q ss_pred ---CCCChhhHHHHhcccccCCCccEEEEEeccCcHHH--H--HHHHHHhc
Q 004808 447 ---CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL--L--KAIAKRAG 490 (729)
Q Consensus 447 ---~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~--l--~~i~~~~~ 490 (729)
+|.+...|+||+||+|| |++|. ++|+++.+... + ..|.+..+
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 89999999999999999 99999 99999877544 3 44554443
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.9e-39 Score=377.45 Aligned_cols=306 Identities=15% Similarity=0.192 Sum_probs=214.7
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 139 ACEALGYS-----KPTPIQA-----ACIPLAL------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 139 ~l~~~g~~-----~pt~iQ~-----~~i~~ll------~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
+|..+||. .|||+|+ .+||.++ .|+|+|++||||||||++|++|+++.+... ++++|||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----~~~~lil 276 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----RLRTAVL 276 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----TCCEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 44566777 8999999 9999988 899999999999999999999999887653 3579999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+||++||.|+++.+..+ ++ ....+.... ....+.-+-+.+.+.+...+.. ...+.++++|||||||+
T Consensus 277 aPTr~La~Q~~~~l~~~----~i--~~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGL----PV--RYLTPAVQR-----EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHF 343 (673)
T ss_dssp ESSHHHHHHHHHHTTTS----CC--EECCC---C-----CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTC
T ss_pred ccHHHHHHHHHHHHhcC----Ce--eeecccccc-----cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcc
Confidence 99999999999887643 22 221111000 0000111223343444333333 24688999999999999
Q ss_pred hhcCChHHHHHHHHHhc-CcCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHH
Q 004808 283 LLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l 361 (729)
+ +..+...+..+...+ +..+|+|+||||+++.+..+... ..|+. .+ ...+... .....+
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v-------------~~~~~~~---~~~~~l 403 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DV-------------SSEIPDR---AWSSGF 403 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EE-------------ECCCCSS---CCSSCC
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EE-------------eeecCHH---HHHHHH
Confidence 8 222222233333333 36789999999998764322110 11111 00 0001000 000111
Q ss_pred HHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccE
Q 004808 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (729)
Q Consensus 362 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 441 (729)
..+.. .++++||||+++..++.++..|...++.+..|||. +|..+++.|++|+.+|||||+++++|||+| +++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 22222 46899999999999999999999999999999994 789999999999999999999999999999 999
Q ss_pred EEE--------------------eCCCCChhhHHHHhcccccC-CCccEEEEEe---ccCcHHHHHHHHHHh
Q 004808 442 VIN--------------------YACPRDLTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 489 (729)
Q Consensus 442 VI~--------------------~d~P~s~~~yiQriGRagR~-G~~G~~i~l~---~~~d~~~l~~i~~~~ 489 (729)
||+ |++|.++.+|+||+||+||. |+.|.|++|+ ++.+...+..++...
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 998 67899999999999999998 7899999996 567766666666543
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.8e-39 Score=357.26 Aligned_cols=280 Identities=19% Similarity=0.195 Sum_probs=197.7
Q ss_pred HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChH
Q 004808 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (729)
Q Consensus 158 ~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~ 237 (729)
+++.|+|+|++||||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~--- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF--- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc---
Confidence 357899999999999999999999999987653 347999999999999999887632 233222211
Q ss_pred HHHHHHhcCCCeEEECchHHHHHHhccC-------ccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc-CcCceEEEEe
Q 004808 238 MQETALRSMPDIVVATPGRMIDHLRNSM-------SVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFS 309 (729)
Q Consensus 238 ~~~~~l~~~~dIvI~TP~~L~~~l~~~~-------~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~-~~~~q~il~S 309 (729)
-+|+||+++++++.+.. ...+.++++|||||||++ +.++...+..+...+ +..+|+++||
T Consensus 70 -----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~S 137 (440)
T 1yks_A 70 -----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMT 137 (440)
T ss_dssp -----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred -----------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEe
Confidence 03778877665544321 234789999999999998 333333333333333 3679999999
Q ss_pred cccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHH
Q 004808 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 389 (729)
Q Consensus 310 ATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~ 389 (729)
||+++.+..+... ..++... ...+....... .+..+.. .++++||||+++..++.++..
T Consensus 138 AT~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~---~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 138 ATPPGTSDEFPHS--NGEIEDV--------------QTDIPSEPWNT---GHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp SSCTTCCCSSCCC--SSCEEEE--------------ECCCCSSCCSS---SCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred CCCCchhhhhhhc--CCCeeEe--------------eeccChHHHHH---HHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 9998765322211 1111110 00011000001 1111222 267999999999999999999
Q ss_pred HhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE-------------------eCCCCC
Q 004808 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------------------YACPRD 450 (729)
Q Consensus 390 L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~-------------------~d~P~s 450 (729)
|...++.+..+|| .+|..+++.|++|+.+|||||+++++|||+| +++||+ |+.|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 3688999999999999999999999999999 999996 899999
Q ss_pred hhhHHHHhcccccC-CCccEEEEEe---ccCcHHHHHHHHHHh
Q 004808 451 LTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 489 (729)
Q Consensus 451 ~~~yiQriGRagR~-G~~G~~i~l~---~~~d~~~l~~i~~~~ 489 (729)
+.+|+||+||+||. |+.|.|++|+ ++.+...+..+...+
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999999999997 6899999996 677777777776653
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.3e-37 Score=345.15 Aligned_cols=273 Identities=16% Similarity=0.208 Sum_probs=198.8
Q ss_pred HHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCC
Q 004808 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235 (729)
Q Consensus 156 i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~ 235 (729)
..++..|+++|+++|||||||++|++|+++.+... ++++|||+|||+||.|+++.+. ++.+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEECSHHHHHHHHHHTT------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCcEEEECchHHHHHHHHHHhc------CceEeEEecccc
Confidence 34456689999999999999999999999988653 3469999999999999988876 333333322211
Q ss_pred hHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch-----hhcCChHHHHHHHHHhcCcCceEEEEec
Q 004808 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-----LLELGFSAEIHELVRLCPKRRQTMLFSA 310 (729)
Q Consensus 236 ~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~-----ll~~gf~~~i~~il~~~~~~~q~il~SA 310 (729)
.. -..+.-+.++|.+.|...+.. ...+.++++|||||||+ ++.++|...+. .++..|+|+|||
T Consensus 84 ~~-----~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SA 151 (459)
T 2z83_A 84 RE-----HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTA 151 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECS
T ss_pred cC-----CCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEc
Confidence 10 122345778899988777765 35688999999999998 44444433321 246789999999
Q ss_pred ccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHH
Q 004808 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390 (729)
Q Consensus 311 Tl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L 390 (729)
|++..+..+... ..|+...... +.......... ++.. .++++||||+++..++.++..|
T Consensus 152 T~~~~~~~~~~~--~~pi~~~~~~--------------~~~~~~~~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHDLQDE--------------IPDRAWSSGYE----WITE-YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEEEECC--------------CCSSCCSSCCH----HHHH-CCSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEEeccc--------------CCcchhHHHHH----HHHh-cCCCEEEEeCChHHHHHHHHHH
Confidence 998764322111 2222211100 00000000011 1111 2679999999999999999999
Q ss_pred hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEE--------------------eCCCCC
Q 004808 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------------------YACPRD 450 (729)
Q Consensus 391 ~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~--------------------~d~P~s 450 (729)
...++.+..+||. +|..+++.|++|+.+|||||+++++|||||+ ++||+ |++|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999995 6788999999999999999999999999999 99999 779999
Q ss_pred hhhHHHHhcccccCCC-ccEEEEEeccC
Q 004808 451 LTSYVHRVGRTARAGR-EGYAVTFVTDN 477 (729)
Q Consensus 451 ~~~yiQriGRagR~G~-~G~~i~l~~~~ 477 (729)
+.+|+||+|||||.|. +|.|++|+++.
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 99999999875
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.8e-35 Score=303.79 Aligned_cols=212 Identities=33% Similarity=0.506 Sum_probs=194.9
Q ss_pred CccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC--CCCCcEE
Q 004808 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRV 199 (729)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~--~~~~~~v 199 (729)
.+..+|.+++|++.+++++..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.++...+. ...++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 34667999999999999999999999999999999999999999999999999999999999999875431 2246679
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 200 LIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
|||+||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++... .+.+.++++|||||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDE 184 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRTTYLVLDE 184 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCCcccccEEEEeC
Confidence 99999999999999999999988899999999999988888888889999999999999999765 56789999999999
Q ss_pred cchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecCC
Q 004808 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334 (729)
Q Consensus 280 ah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~ 334 (729)
||++++++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+..
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999887643
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.3e-35 Score=357.96 Aligned_cols=336 Identities=16% Similarity=0.161 Sum_probs=230.4
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhcc
Q 004808 146 SKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~ 223 (729)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+.... ..++|||||+ .|+.||...+....
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~----~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA----AERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS----CCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC----CCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 36899999999998874 58999999999999998666655543322 2359999999 99999999886643
Q ss_pred CceEEEEecCCChHHHHH--HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChH--HHHHHHHHhc
Q 004808 224 DIRCCLVVGGLSTKMQET--ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLC 299 (729)
Q Consensus 224 ~i~v~~~~gg~~~~~~~~--~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~--~~i~~il~~~ 299 (729)
++.+.++.|+........ ......+|+|+|++.|.........+....|++|||||||++.+.+.. ..+..+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 666666655432211110 112246899999999865432222244568999999999999865422 1222333333
Q ss_pred CcCceEEEEecccch----hHHHHHHHhcCC-----------------------------C-------------------
Q 004808 300 PKRRQTMLFSATLTE----DVDELIKLSLTK-----------------------------P------------------- 327 (729)
Q Consensus 300 ~~~~q~il~SATl~~----~v~~l~~~~l~~-----------------------------p------------------- 327 (729)
....+++++|||+.. ++..++...... +
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 355679999999842 111111110000 0
Q ss_pred --------------------------------eEEecCC--CCCCCC-CceeEEEEe-----------------------
Q 004808 328 --------------------------------LRLSADP--SAKRPS-TLTEEVVRI----------------------- 349 (729)
Q Consensus 328 --------------------------------~~i~~~~--~~~~~~-~l~~~~~~~----------------------- 349 (729)
+.+.... ....+. .+....+..
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 0000000 000000 000000000
Q ss_pred -------------------ehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHH
Q 004808 350 -------------------RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQR 409 (729)
Q Consensus 350 -------------------~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R 409 (729)
.......+...+..++....+.++||||+++..++.+...|.. .|+.+..+||+|++.+|
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 0112234566777777777789999999999999999999994 69999999999999999
Q ss_pred HHHHHHHhcCC--ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHH
Q 004808 410 LEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (729)
Q Consensus 410 ~~~l~~F~~g~--~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~ 487 (729)
..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.|++++........+.|.+
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~ 623 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVR 623 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHH
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHH
Confidence 99999999998 9999999999999999999999999999999999999999999999987666654443334444444
Q ss_pred Hh
Q 004808 488 RA 489 (729)
Q Consensus 488 ~~ 489 (729)
.+
T Consensus 624 ~~ 625 (968)
T 3dmq_A 624 WY 625 (968)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 52
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=297.61 Aligned_cols=207 Identities=44% Similarity=0.768 Sum_probs=191.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
...+|.+++|++.++++|..+||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+..... ++++|||
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~---~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ---RLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC---SSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC---CceEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999876542 4579999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.+...+.+..+++|||||||+
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 99999999999999999888899999999999888877778889999999999999999875567789999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEec
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~ 332 (729)
+++++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999988765
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3e-35 Score=327.59 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=192.7
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~ 240 (729)
.|+++|+++|||||||++|++|+++.+... ++++||++||++||.|+++.+. ++.+.++.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----
Confidence 378999999999999999999999776643 3469999999999999987765 4566655554221
Q ss_pred HHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhc-CcCceEEEEecccchhHHHH
Q 004808 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDEL 319 (729)
Q Consensus 241 ~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~l 319 (729)
.-..+.-+.++|.+.+...+.. ...+.++++|||||||++ ..++......+.... +..+|+|+||||+++.+..+
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred -cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1122345778898988776665 456889999999999997 333333333333332 56899999999999753221
Q ss_pred HHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 004808 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (729)
Q Consensus 320 ~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ 399 (729)
... ..|+. .+ ...+.... ...+..++.. .++++||||+++..++.++..|...++.+..
T Consensus 142 ~~~--~~~i~-~~-------------~~~~~~~~----~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS--NSPII-DE-------------ETRIPDKA----WNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC--SSCCE-EE-------------ECCCCSSC----CSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC--CCcee-ec-------------cccCCHHH----HHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 01111 00 00011000 0001112222 2568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccE-----------------EEEeCCCCChhhHHHHhcccc
Q 004808 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT-----------------VINYACPRDLTSYVHRVGRTA 462 (729)
Q Consensus 400 lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~-----------------VI~~d~P~s~~~yiQriGRag 462 (729)
+||. +|..+++.|++|+.+|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 577899999999999999999999999999 655 678899999999999999999
Q ss_pred cCCC-ccEEEEEe
Q 004808 463 RAGR-EGYAVTFV 474 (729)
Q Consensus 463 R~G~-~G~~i~l~ 474 (729)
|.|. .|.+++|.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 56666665
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=308.44 Aligned_cols=205 Identities=30% Similarity=0.491 Sum_probs=184.0
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g--~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vL 200 (729)
...+|.+++|++.++++|..+||..|||+|.++||.++.| +|+|++||||||||++|++|+++++.... .++++|
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~---~~~~~l 166 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCL 166 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC---CCceEE
Confidence 4678999999999999999999999999999999999998 99999999999999999999999976543 356799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 201 Il~PtreLa~Q~~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
||+|||+||.|+++.+..++.+ .++.+.+++|+...... ....++|+|+||++|++++.+...+.+.++++|||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 9999999999999999999876 47888888888764322 2456899999999999999775567789999999999
Q ss_pred cchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecC
Q 004808 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (729)
Q Consensus 280 ah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~ 333 (729)
||+|++ ++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+.
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999997 799999999999999999999999999999999999999999888763
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.4e-35 Score=337.92 Aligned_cols=312 Identities=20% Similarity=0.203 Sum_probs=221.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 133 ~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
....++++..+++ | .|.......+.|++++++||||||||+ +++..+.... ..+|++|||+||.|+
T Consensus 130 ~~d~l~~i~dl~~--p--~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~------~gl~l~PtR~LA~Qi 195 (677)
T 3rc3_A 130 CKDDLRKISDLRI--P--PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK------SGVYCGPLKLLAHEI 195 (677)
T ss_dssp CHHHHHHHTBCCC--G--GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS------SEEEEESSHHHHHHH
T ss_pred CHHHHHHHhhccC--h--hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC------CeEEEeCHHHHHHHH
Confidence 3344455544433 3 333334456789999999999999998 3444444432 258999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHH
Q 004808 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (729)
Q Consensus 213 ~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i 292 (729)
++.+..+ ++.+.+++|+..... ..-....+++++|++.+ .....+++|||||||++++.+|...+
T Consensus 196 ~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~---------~l~~~v~lvVIDEaH~l~d~~~g~~~ 260 (677)
T 3rc3_A 196 FEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC---------SVTTPYEVAVIDEIQMIRDPARGWAW 260 (677)
T ss_dssp HHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC---------CSSSCEEEEEECSGGGGGCTTTHHHH
T ss_pred HHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHh---------hhcccCCEEEEecceecCCccchHHH
Confidence 9998774 788888888854310 00001245666665332 12467899999999999999999999
Q ss_pred HHHHHhcC-cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCC
Q 004808 293 HELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371 (729)
Q Consensus 293 ~~il~~~~-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~ 371 (729)
..++..++ ...|++++|||. +.+..+.... ..++.+... .+...+. +.... + ..+... ..
T Consensus 261 ~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~---~r~~~l~---~~~~~---------l-~~l~~~-~~ 321 (677)
T 3rc3_A 261 TRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY---KRLTPIS---VLDHA---------L-ESLDNL-RP 321 (677)
T ss_dssp HHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC---CCSSCEE---ECSSC---------C-CSGGGC-CT
T ss_pred HHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe---eecchHH---HHHHH---------H-HHHHhc-CC
Confidence 88888887 788999999995 3344444332 333333211 1111111 00000 0 011111 34
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc--CCceEEEEcCccccccCCCCccEEEEeCC--
Q 004808 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYAC-- 447 (729)
Q Consensus 372 ~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTd~~~rGlDi~~v~~VI~~d~-- 447 (729)
+.||||+++..++.++..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ +|++||++++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccc
Confidence 56899999999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred ------------CCChhhHHHHhcccccCCCc---cEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 448 ------------PRDLTSYVHRVGRTARAGRE---GYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 448 ------------P~s~~~yiQriGRagR~G~~---G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
|.+...|+||+|||||.|.. |.|+++ ...+...++.+.......+.
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCCC
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchhh
Confidence 88999999999999999964 666554 45566666666655444443
No 56
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-34 Score=297.91 Aligned_cols=221 Identities=34% Similarity=0.564 Sum_probs=189.5
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC------CCCC
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------RIPA 196 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~------~~~~ 196 (729)
...+|.+++|++.++++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++++..... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 3567999999999999999999999999999999999999999999999999999999999999875431 1234
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
+++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+..+++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CCChhhCCEEE
Confidence 68999999999999999999999888889999999999888877778888999999999999998775 56789999999
Q ss_pred EeCcchhhcCChHHHHHHHHHh--cCc--CceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCcee
Q 004808 277 LDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344 (729)
Q Consensus 277 vDEah~ll~~gf~~~i~~il~~--~~~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~ 344 (729)
|||||++++++|...+..++.. ++. .+|+++||||+++.+..++..++.+|+.+.+.........+.|
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999985 444 7899999999999999999999999988877655444444443
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=291.71 Aligned_cols=209 Identities=32% Similarity=0.489 Sum_probs=180.9
Q ss_pred CCccCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC---CCCC
Q 004808 121 SFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPA 196 (729)
Q Consensus 121 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~---~~~~ 196 (729)
+.+..+|.+ +++++.++++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.++..... ...+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 334567888 799999999999999999999999999999999999999999999999999999998764321 1245
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
+++|||+||++||.|+++.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++||
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEE
Confidence 679999999999999999999986 4688899999998887777778888999999999999988764 56789999999
Q ss_pred EeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEe
Q 004808 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331 (729)
Q Consensus 277 vDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~ 331 (729)
|||||++++++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998764
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.9e-35 Score=336.76 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=188.9
Q ss_pred CCcHHHHHHHHHHhc----C-CCEEEEcCCCchhhHHhhhhhhHHHhcCC----CCCCCcEEEEEcCcHHHHHHHH-HHH
Q 004808 147 KPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTPTRELAVQVH-SMI 216 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~----g-~dvlv~a~TGsGKT~a~~lpil~~l~~~~----~~~~~~~vLIl~PtreLa~Q~~-~~~ 216 (729)
.|+|+|.++++.++. | ++++++++||||||+++ ++++..++... .....+++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999886 4 56899999999999995 55555555432 1114567999999999999998 666
Q ss_pred HHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhcc---CccCCCCeeEEEEeCcchhhcCChHHHHH
Q 004808 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDEADRLLELGFSAEIH 293 (729)
Q Consensus 217 ~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~---~~~~l~~i~~lVvDEah~ll~~gf~~~i~ 293 (729)
..+ +..+..+.++. .....+|+|+||++|..++... ..+....+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 33344444331 3356799999999998875421 13456789999999999997643 24456
Q ss_pred HHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEec-----CCCCCCCCCcee------------------------
Q 004808 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKRPSTLTE------------------------ 344 (729)
Q Consensus 294 ~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~-----~~~~~~~~~l~~------------------------ 344 (729)
.++..++ ..++++||||+...........+..++.... ......+..+..
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6667665 4679999999875433222233333221100 000000000000
Q ss_pred --EEEEeehhh----hhhHHH----HHHHHhh-ccCCCeEEEEeCcHHHHHHHHHHHhhcCC--------ceeeccCCCC
Q 004808 345 --EVVRIRRMR----EVNQEA----VLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAAL--------KAAELHGNLT 405 (729)
Q Consensus 345 --~~~~~~~~~----~~~k~~----~l~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~~--------~~~~lhg~~~ 405 (729)
......... ...+.. .+..++. ....+++||||+++..++.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000000000 000111 1222222 23458999999999999999999976543 2678999986
Q ss_pred HHHHHHHHHHHhcCCce---EEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCC
Q 004808 406 QAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (729)
Q Consensus 406 ~~~R~~~l~~F~~g~~~---vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~ 466 (729)
. +|..+++.|++|+.. |||||+++++|||+|+|++||+|++|+++..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998866 88999999999999999999999999999999999999999764
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=290.45 Aligned_cols=209 Identities=39% Similarity=0.622 Sum_probs=186.2
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCC-CCCCcEEEEE
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLIL 202 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~-~~~~~~vLIl 202 (729)
..+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.++.... ...++++|||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999998875332 1235679999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcch
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (729)
+||++|+.|+++.+..++...++.+..++|+.........+ .+++|+|+||++|..++.....+.+..+++|||||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999887889999999998766555544 57899999999999998775557788999999999999
Q ss_pred hhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecC
Q 004808 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (729)
Q Consensus 283 ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~ 333 (729)
+++++|...+..++..++..+|+++||||+++.+..++..++.+|..+.+.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999887654
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-33 Score=281.69 Aligned_cols=202 Identities=35% Similarity=0.625 Sum_probs=184.5
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
.+|++++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++++.... .++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK---DNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS---CSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC---CCeeEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999999999998875432 3457999999
Q ss_pred cHHHHHHHHHHHHHHhhcc-CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
|++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|...+... ...+..+++|||||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHh
Confidence 9999999999999988765 78999999999887777777788999999999999988764 466889999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEE
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i 330 (729)
++++|...+..++..+++..|+++||||+++.+..++..++.+|+.+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999998765
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=8.3e-34 Score=290.53 Aligned_cols=207 Identities=34% Similarity=0.553 Sum_probs=176.7
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
...+|++++|++.++++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... .++++|||
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~---~~~~~lil 104 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF---KETQALVL 104 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEEE
Confidence 356799999999999999999999999999999999999999999999999999999999999875432 34579999
Q ss_pred cCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcC-CCeEEECchHHHHHHhccCccCCCCeeEEEEeCcc
Q 004808 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~-~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (729)
+||++|+.|+++.+..++...++.+..++|+.....+...+..+ ++|+|+||++|.+++... .+.+..+++|||||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCch
Confidence 99999999999999999888888999999988766665556555 899999999999998764 4668899999999999
Q ss_pred hhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecC
Q 004808 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (729)
Q Consensus 282 ~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~ 333 (729)
++++++|...+..++..++..+|+++||||+++.+..++..++.+|+.+.+.
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999887653
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=294.43 Aligned_cols=207 Identities=39% Similarity=0.618 Sum_probs=184.4
Q ss_pred CccCCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC-CCCcE
Q 004808 122 FHANSFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIR 198 (729)
Q Consensus 122 ~~~~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~ 198 (729)
+...+|.+++ |++.++++|..+||..|+|+|.++++.++.|+|+|++||||||||++|++|+++.+...... ..+++
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 3455677777 99999999999999999999999999999999999999999999999999999988753311 13567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
+|||+||++||.|+++.+..++...++.+..++|+.........+..+++|+|+||++|.+++.....+.+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999988888999999999998888888888899999999999999987666778999999999
Q ss_pred CcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCe
Q 004808 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328 (729)
Q Consensus 279 Eah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~ 328 (729)
|||+|++++|...+..++..++..+|+++||||+++.+..+++.++.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998887653
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.9e-33 Score=280.96 Aligned_cols=204 Identities=44% Similarity=0.652 Sum_probs=185.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+........++++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999988754333456789999999
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 206 reLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
++|+.|+++.+..+.. .+++..++|+.........+..+++|+|+||++|..++... .+.+..+++|||||||++++
T Consensus 82 ~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChhHhhc
Confidence 9999999999998764 37788899998877777777788999999999999998774 56789999999999999999
Q ss_pred CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEec
Q 004808 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (729)
Q Consensus 286 ~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~ 332 (729)
++|...+..++..++...|+++||||+++.+..++..++.+|+.+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999987754
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.1e-34 Score=287.79 Aligned_cols=205 Identities=32% Similarity=0.552 Sum_probs=183.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
.+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+.... .++++|||+|
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P 80 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER---AEVQAVITAP 80 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEECS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc---CCceEEEEcC
Confidence 5699999999999999999999999999999999999999999999999999999999999875432 3457999999
Q ss_pred cHHHHHHHHHHHHHHhhcc----CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCc
Q 004808 205 TRELAVQVHSMIEKIAQFT----DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 205 treLa~Q~~~~~~~l~~~~----~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (729)
|++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|.+++... .+.+..+++||||||
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDEa 159 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDEA 159 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT-CCCGGGCCEEEECSH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC-CCCcCcceEEEEcCc
Confidence 9999999999999988765 78888999987765554445567899999999999988764 466889999999999
Q ss_pred chhhcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecC
Q 004808 281 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (729)
Q Consensus 281 h~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~ 333 (729)
|++++++|...+..++..+++..|+++||||+++++.+++..++.+|..+.+.
T Consensus 160 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999999999999999999999999999877653
No 65
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.7e-33 Score=286.89 Aligned_cols=206 Identities=33% Similarity=0.535 Sum_probs=182.3
Q ss_pred CccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEE
Q 004808 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (729)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLI 201 (729)
....+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... .++++||
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~li 97 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---LSTQILI 97 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEE
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999876432 3457999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcc-CceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCc
Q 004808 202 LTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 202 l~PtreLa~Q~~~~~~~l~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (729)
|+||++|+.|+++.+..++... ++++..++|+.....+...+ .+++|+|+||++|.+++... .+.+..+++||||||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELD-YLNPGSIRLFILDEA 175 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTT-SSCGGGCCEEEESSH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcC-CcccccCCEEEeCCc
Confidence 9999999999999999987654 88999999998876655544 47899999999999988764 566789999999999
Q ss_pred chhhcCC-hHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEec
Q 004808 281 DRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (729)
Q Consensus 281 h~ll~~g-f~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~ 332 (729)
|+++++| |...+..++..++..+|+++||||+++.+..++..++.+|+.+.+
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999998 999999999999999999999999999999999999999887654
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.9e-31 Score=299.62 Aligned_cols=321 Identities=19% Similarity=0.198 Sum_probs=232.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .|+++|.-+...+..|+ |+.+.||+|||+++.+|++-..+. +..|.||+|++.||.|-++++..+..+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~------G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI------GKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT------SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc------CCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 465 58999999999999887 999999999999999999755443 335999999999999999999999999
Q ss_pred cCceEEEEecC--------------------------------------------------CChHHHHHHHhcCCCeEEE
Q 004808 223 TDIRCCLVVGG--------------------------------------------------LSTKMQETALRSMPDIVVA 252 (729)
Q Consensus 223 ~~i~v~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIvI~ 252 (729)
.|+.|++++.. .+...... ...+||+++
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItYg 220 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTYG 220 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEEE
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEEc
Confidence 99999999872 11111111 123799999
Q ss_pred CchHH-HHHHhccC-----ccCCCCeeEEEEeCcchhh-cC--------C-------hH---------------------
Q 004808 253 TPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------G-------FS--------------------- 289 (729)
Q Consensus 253 TP~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~--------g-------f~--------------------- 289 (729)
|..-| .++|+... ......+.+.||||+|.+| +. | +.
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 98776 45555432 2235678899999999843 10 0 00
Q ss_pred -----------------------------HH---HHHHHHh---cC----------------------------------
Q 004808 290 -----------------------------AE---IHELVRL---CP---------------------------------- 300 (729)
Q Consensus 290 -----------------------------~~---i~~il~~---~~---------------------------------- 300 (729)
.. +...+.. +.
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 00 0000000 00
Q ss_pred ---------------------------cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhh
Q 004808 301 ---------------------------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (729)
Q Consensus 301 ---------------------------~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~ 353 (729)
...++.+||+|+..+..++...+-.. .+.+ +.......+.+....+. .
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~--t 455 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFR--T 455 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEES--S
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEe--c
Confidence 02368999999998887776655322 2222 22222222222111222 2
Q ss_pred hhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 004808 354 EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (729)
Q Consensus 354 ~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~ 431 (729)
...+...+...+.. ..+.++||||+|+..++.|+..|...|+++..|||+..+.++..+...|+.| .|+|||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 23455555555543 2467999999999999999999999999999999996666665555666655 6999999999
Q ss_pred cccCCC--------CccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHH
Q 004808 432 RGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (729)
Q Consensus 432 rGlDi~--------~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~ 481 (729)
||+||+ ++.+||+|++|.++..|+||+|||||+|.+|.+++|++..|..+
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 999998 77799999999999999999999999999999999999988443
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=4.9e-33 Score=281.80 Aligned_cols=205 Identities=34% Similarity=0.567 Sum_probs=177.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~ 203 (729)
..+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+.... .++++||++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~---~~~~~lil~ 89 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLA 89 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC---CSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC---CCceEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999875432 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh
Q 004808 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (729)
Q Consensus 204 PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (729)
||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|..++... .+.+..+++|||||||++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHH
Confidence 999999999999999988889999999998776655544443 899999999999988774 567889999999999999
Q ss_pred hcCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEecC
Q 004808 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (729)
Q Consensus 284 l~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~ 333 (729)
.+++|...+..++..+++..|+++||||+++.+..++..++.+|+.+.+.
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999887664
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.9e-33 Score=317.96 Aligned_cols=312 Identities=16% Similarity=0.214 Sum_probs=215.8
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll----~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+|+|.+++++++ .++++|++++||+|||+++ +.++..+.... ...++|||||+ .|+.||.+.+.+++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~---~~~~~LIv~P~-~l~~qw~~e~~~~~-- 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKEN---ELTPSLVICPL-SVLKNWEEELSKFA-- 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTT---CCSSEEEEECS-TTHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcC---CCCCEEEEccH-HHHHHHHHHHHHHC--
Confidence 69999999999874 5789999999999999986 45555554332 22359999995 58899999999875
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcC
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~ 302 (729)
+++++.+++|+... .....++|+|+||+.|..... +....|++|||||||++.+.+. .....+..++ .
T Consensus 110 ~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp TTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred CCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 35677777766532 123457999999999976443 3345789999999999987642 2334444453 4
Q ss_pred ceEEEEecccchh-HHHH---HHHh--------------------------------cCCCeEEecCCC-----CCCCCC
Q 004808 303 RQTMLFSATLTED-VDEL---IKLS--------------------------------LTKPLRLSADPS-----AKRPST 341 (729)
Q Consensus 303 ~q~il~SATl~~~-v~~l---~~~~--------------------------------l~~p~~i~~~~~-----~~~~~~ 341 (729)
.+.+++|||+..+ +.++ +... +..|+.+..... ...|..
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSE
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCC
Confidence 5689999998532 2221 1111 011222211110 011221
Q ss_pred ceeEEEEeehhh------------------------------------------------------hhhHHHHHHHHhhc
Q 004808 342 LTEEVVRIRRMR------------------------------------------------------EVNQEAVLLSLCSK 367 (729)
Q Consensus 342 l~~~~~~~~~~~------------------------------------------------------~~~k~~~l~~l~~~ 367 (729)
....+.+.... ...+...+..++..
T Consensus 258 -~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 258 -IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp -EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred -eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 11222221100 01122222333332
Q ss_pred --cCCCeEEEEeCcHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcC-Cce-EEEEcCccccccCCCCccEE
Q 004808 368 --TFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDVAARGLDIIGVQTV 442 (729)
Q Consensus 368 --~~~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-vLVaTd~~~rGlDi~~v~~V 442 (729)
..+.++||||++...+..+...|... ++.+..+||++++.+|..+++.|++| ... +|++|+++++|||++++++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 24679999999999999999999875 99999999999999999999999998 555 79999999999999999999
Q ss_pred EEeCCCCChhhHHHHhcccccCCCccEE--EEEeccCc
Q 004808 443 INYACPRDLTSYVHRVGRTARAGREGYA--VTFVTDND 478 (729)
Q Consensus 443 I~~d~P~s~~~yiQriGRagR~G~~G~~--i~l~~~~d 478 (729)
|+||+|||+..|+||+||++|.|+.+.| +.|++...
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999999999999999976544 55666654
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-32 Score=275.21 Aligned_cols=205 Identities=36% Similarity=0.653 Sum_probs=181.2
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
...+|.+++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... .++++|||
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil 88 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVM 88 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---TCCCEEEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC---CCEEEEEE
Confidence 456799999999999999999999999999999999999999999999999999999999998864322 34579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcc-CceEEEEecCCChHHHHHHHhc-CCCeEEECchHHHHHHhccCccCCCCeeEEEEeCc
Q 004808 203 TPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 203 ~PtreLa~Q~~~~~~~l~~~~-~i~v~~~~gg~~~~~~~~~l~~-~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (729)
+||++|+.|+++.+..+.... ++++..++|+.........+.. .++|+|+||++|..++... .+.+..+++||||||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDEC 167 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESH
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCH
Confidence 999999999999999987764 8999999999887766655554 5799999999999988764 567899999999999
Q ss_pred chhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCeEEe
Q 004808 281 DRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331 (729)
Q Consensus 281 h~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~ 331 (729)
|++++ .+|...+..++..++...|+++||||+++.+..++..++.+|+.+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99997 5788889999999999999999999999999999999999987664
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=281.32 Aligned_cols=210 Identities=34% Similarity=0.540 Sum_probs=177.7
Q ss_pred ccCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcE
Q 004808 123 HANSFMEL----NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198 (729)
Q Consensus 123 ~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 198 (729)
+..+|.++ +|++.+++++..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... ..+++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~ 100 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--NKGFR 100 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC--SSSCC
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc--cCCce
Confidence 34567766 8999999999999999999999999999999999999999999999999999999886432 24567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHH-HHHhcCCCeEEECchHHHHHHhccC-ccCCCCeeEEE
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLI 276 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~-~~l~~~~dIvI~TP~~L~~~l~~~~-~~~l~~i~~lV 276 (729)
+|||+||++|+.|+++.+..++...++.+..++|+....... .....+++|+|+||++|..++.... .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 999999999999999999999888888888777664322211 1224568999999999999997653 46789999999
Q ss_pred EeCcchhhc---CChHHHHHHHHHhc-CcCceEEEEecccchhHHHHHHHhcCCCeEEecCC
Q 004808 277 LDEADRLLE---LGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334 (729)
Q Consensus 277 vDEah~ll~---~gf~~~i~~il~~~-~~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~ 334 (729)
|||||++++ .+|...+..++..+ +...|+++||||+++++..++..++.+|+.+.+..
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999998 57888888887765 45789999999999999999999999999887754
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-31 Score=313.63 Aligned_cols=330 Identities=18% Similarity=0.236 Sum_probs=228.0
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll----~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+|+|.+++.+++ .++++|++++||+|||++++..+...+.... ....+||||| ..|+.||.+.+.+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~---~~~~~LIV~P-~sll~qW~~E~~~~~-- 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR---QNGPHIIVVP-LSTMPAWLDTFEKWA-- 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS---CCSCEEEECC-TTTHHHHHHHHHHHS--
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC---CCCCEEEEEC-chHHHHHHHHHHHHC--
Confidence 68999999999887 6899999999999999986444433332222 1234899999 567899999998875
Q ss_pred cCceEEEEecCCChHHHHHHH------------hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHH
Q 004808 223 TDIRCCLVVGGLSTKMQETAL------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l------------~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~ 290 (729)
+++++.+++|+.......... ...++|+|+||+.+...... +....|.+|||||||++-+.. .
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s 384 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--S 384 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--S
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--h
Confidence 577888777776544332221 23478999999999775432 223468899999999997643 2
Q ss_pred HHHHHHHhcCcCceEEEEecccc----hhHHHHHHHhcCC-----------------------------CeEEecCC---
Q 004808 291 EIHELVRLCPKRRQTMLFSATLT----EDVDELIKLSLTK-----------------------------PLRLSADP--- 334 (729)
Q Consensus 291 ~i~~il~~~~~~~q~il~SATl~----~~v~~l~~~~l~~-----------------------------p~~i~~~~--- 334 (729)
.....+..++ ....+++|||+- .++..++...... |+.+....
T Consensus 385 ~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv 463 (800)
T 3mwy_W 385 SLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDV 463 (800)
T ss_dssp HHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGG
T ss_pred HHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhh
Confidence 3333444443 445689999983 2232222222111 11111000
Q ss_pred CCCCCCCceeEEEEeehh--------------------------------------------------------------
Q 004808 335 SAKRPSTLTEEVVRIRRM-------------------------------------------------------------- 352 (729)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~-------------------------------------------------------------- 352 (729)
....|. .....+.+...
T Consensus 464 ~~~LP~-k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 464 EKSLPS-KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp TTTSCC-EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhccCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000111 11111111100
Q ss_pred ----------hhhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 004808 353 ----------REVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (729)
Q Consensus 353 ----------~~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 420 (729)
....+...+..++.. ..+.++||||.....+..|..+|...|+.+..|||.++..+|..+++.|++|.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 011223334444433 24679999999999999999999999999999999999999999999999865
Q ss_pred c---eEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCc--cEEEEEeccC--cHHHHHHHHHHh
Q 004808 421 V---DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDN--DRSLLKAIAKRA 489 (729)
Q Consensus 421 ~---~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~--G~~i~l~~~~--d~~~l~~i~~~~ 489 (729)
. .+||+|.++++|||++.+++||+||+||||..++||+||++|.|+. ..++.|++.. |..++..+.++.
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 4 4999999999999999999999999999999999999999999975 5566677776 455555555443
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=3.8e-30 Score=300.24 Aligned_cols=323 Identities=16% Similarity=0.190 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCC-CCCcEEEEEcCcHHHHHHHHHHH
Q 004808 147 KPTPIQAACIPLAL---------TGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRELAVQVHSMI 216 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll---------~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~vLIl~PtreLa~Q~~~~~ 216 (729)
.|+|+|.+++.++. .+..+|++.+||+|||++++..+...+...+.. ....++|||||+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999985 356799999999999998755554444333221 123469999997 7889999999
Q ss_pred HHHhhccCceEEEEecCCChHHHHH---HHh-----cCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCCh
Q 004808 217 EKIAQFTDIRCCLVVGGLSTKMQET---ALR-----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288 (729)
Q Consensus 217 ~~l~~~~~i~v~~~~gg~~~~~~~~---~l~-----~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf 288 (729)
.+++.. .+.+..++||........ .+. ...+|+|+||+.|..... .+....|.+|||||||++-+...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChhh
Confidence 988654 456666677654322111 111 137899999999986543 33446788999999999987542
Q ss_pred HHHHHHHHHhcCcCceEEEEecccchh----HHHHH---------------HHh--------------------------
Q 004808 289 SAEIHELVRLCPKRRQTMLFSATLTED----VDELI---------------KLS-------------------------- 323 (729)
Q Consensus 289 ~~~i~~il~~~~~~~q~il~SATl~~~----v~~l~---------------~~~-------------------------- 323 (729)
.....+..++ ....+++|||+-.+ +..++ ..+
T Consensus 210 --~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 210 --QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred --HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2223333333 34679999998422 00000 000
Q ss_pred ---cCCCeEEecC---CCCCCCCCceeEEEEeehh---------------------------------------------
Q 004808 324 ---LTKPLRLSAD---PSAKRPSTLTEEVVRIRRM--------------------------------------------- 352 (729)
Q Consensus 324 ---l~~p~~i~~~---~~~~~~~~l~~~~~~~~~~--------------------------------------------- 352 (729)
+..|..+.-. .....|... ...+.+...
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~-~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKI-EQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEE-EEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCce-EEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0000000000 000011111 111111000
Q ss_pred ------------------------------hhhhHHHHHHHHhh---ccCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 004808 353 ------------------------------REVNQEAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (729)
Q Consensus 353 ------------------------------~~~~k~~~l~~l~~---~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ 399 (729)
....+...+..++. ...+.++||||++...++.+..+|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00112222322222 234789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCce---EEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCcc--EEEEEe
Q 004808 400 LHGNLTQAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG--YAVTFV 474 (729)
Q Consensus 400 lhg~~~~~~R~~~l~~F~~g~~~---vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G--~~i~l~ 474 (729)
+||+++..+|..+++.|++|... +||+|.++++|||++++++||+||+|||+..|.|++||++|.|+.. .++.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998754 8999999999999999999999999999999999999999999764 555667
Q ss_pred ccCc
Q 004808 475 TDND 478 (729)
Q Consensus 475 ~~~d 478 (729)
+...
T Consensus 526 ~~~t 529 (644)
T 1z3i_X 526 STGT 529 (644)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 7653
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=5.3e-31 Score=317.68 Aligned_cols=341 Identities=16% Similarity=0.105 Sum_probs=222.7
Q ss_pred HHHHHHHHHcC-------CCCCcHHHHHHHHHHhc--------------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCC
Q 004808 134 RPLLRACEALG-------YSKPTPIQAACIPLALT--------------GRDICGSAITGSGKTAAFALPTLERLLYRPK 192 (729)
Q Consensus 134 ~~l~~~l~~~g-------~~~pt~iQ~~~i~~ll~--------------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~ 192 (729)
..++..+..+- ...|+|+|..+++.++. +++++++++||||||+++ ++++..+. ...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~-~~~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT-ELD 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT-TCT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH-hcC
Confidence 34555555532 23599999999999876 378999999999999997 67765443 211
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHh-cCCCeEEECchHHHHHHhccCc-cCCC
Q 004808 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMS-VDLD 270 (729)
Q Consensus 193 ~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIvI~TP~~L~~~l~~~~~-~~l~ 270 (729)
...++||||||++|+.|+.+.+..++.. .+.++.+.......+. ..++|+|+||++|..++..... ..+.
T Consensus 329 --~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 329 --FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp --TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred --CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 2358999999999999999998876532 1345555555555553 5689999999999988765321 2356
Q ss_pred CeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecccchhH--------H-------------HHHHHhcCCCeE
Q 004808 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV--------D-------------ELIKLSLTKPLR 329 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl~~~v--------~-------------~l~~~~l~~p~~ 329 (729)
.+.+||+||||++... ..+..+...+| ..++++||||+.... . +.+......|+.
T Consensus 401 ~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~ 476 (1038)
T 2w00_A 401 QQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFK 476 (1038)
T ss_dssp SCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEE
T ss_pred cccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeE
Confidence 7889999999998642 33455666665 479999999997432 1 112222222332
Q ss_pred EecCCCCCCCCC--ce---eEEEEe---ehhhhhhHHHH-HHHHh----hc-------cCCCeEEEEeCcHHHHHHHHHH
Q 004808 330 LSADPSAKRPST--LT---EEVVRI---RRMREVNQEAV-LLSLC----SK-------TFTSKVIIFSGTKQAAHRLKIL 389 (729)
Q Consensus 330 i~~~~~~~~~~~--l~---~~~~~~---~~~~~~~k~~~-l~~l~----~~-------~~~~~vLIF~~s~~~~~~l~~~ 389 (729)
+........... .. ..+..+ .......+... +..++ .. ..+.++||||+|+..|..+...
T Consensus 477 v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~ 556 (1038)
T 2w00_A 477 VDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYAT 556 (1038)
T ss_dssp EEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHH
T ss_pred EEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHH
Confidence 211110000000 00 000000 00000011111 11121 11 1346899999999999999999
Q ss_pred HhhcC------------Cce-eeccCC----------C----------CH-----------------------------H
Q 004808 390 FGLAA------------LKA-AELHGN----------L----------TQ-----------------------------A 407 (729)
Q Consensus 390 L~~~~------------~~~-~~lhg~----------~----------~~-----------------------------~ 407 (729)
|...+ +.+ ..+||. + ++ .
T Consensus 557 l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~ 636 (1038)
T 2w00_A 557 FKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQN 636 (1038)
T ss_dssp HHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHH
T ss_pred HHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhH
Confidence 87654 555 455542 2 22 2
Q ss_pred HHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCc----cEEEEEeccCcHHHHH
Q 004808 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE----GYAVTFVTDNDRSLLK 483 (729)
Q Consensus 408 ~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~----G~~i~l~~~~d~~~l~ 483 (729)
.|..+++.|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+. ....+..
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~-~~~~l~~ 714 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD-LERSTID 714 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC-CHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc-cHHHHHH
Confidence 47889999999999999999999999999999 788999999999999999999998753 77776665 3344445
Q ss_pred HHHHHhc
Q 004808 484 AIAKRAG 490 (729)
Q Consensus 484 ~i~~~~~ 490 (729)
+|....+
T Consensus 715 Al~~y~~ 721 (1038)
T 2w00_A 715 AITLFGD 721 (1038)
T ss_dssp HHHHTSC
T ss_pred HHHHHhC
Confidence 5554433
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.5e-30 Score=303.69 Aligned_cols=201 Identities=17% Similarity=0.214 Sum_probs=118.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC-
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~- 447 (729)
.+.++||||+|+..++.|..+|...|+.+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|+|++||+|+.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004808 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523 (729)
Q Consensus 448 ----P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 523 (729)
|.++..|+||+|||||.| .|.|++|+++.+..+.+.|.+.......+..++......+....+.+.+.+.. ..
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~~~i~~~~~~--~~ 594 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRP--EG 594 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC--------------
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhh--hh
Confidence 999999999999999985 89999999999998888887655322222222211111011111111111110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHHh
Q 004808 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIEK 578 (729)
Q Consensus 524 e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 578 (729)
...... ...+........+..+...|...++.+ |+. ++.+++.+..|+.
T Consensus 595 ~~~~~~--~~~~~~~~~~~~i~~l~~~m~~aa~~l~fe~----Aa~lRd~i~~l~~ 644 (664)
T 1c4o_A 595 YEEAPL--EADLSGEDLRERIAELELAMWQAAEALDFER----AARLRDEIRALEA 644 (664)
T ss_dssp --------------------------------------------------------
T ss_pred cchhhh--hhhcCHHHHHHHHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHHH
Confidence 000000 011233345566777777888888877 776 8888888887763
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.97 E-value=1.2e-29 Score=295.86 Aligned_cols=260 Identities=16% Similarity=0.221 Sum_probs=163.6
Q ss_pred cCceEEEEecccchhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhc-cCCCeEEEEeCc
Q 004808 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSGT 379 (729)
Q Consensus 301 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~-~~~~~vLIF~~s 379 (729)
..+|+++||||+++..... ....+..... +..+....+.+..... ....++..+... ..+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r-----~~~l~~p~i~v~~~~~-~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIR-----PTGLLDPLIDVRPIEG-QIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCC-----TTCCCCCEEEEECSTT-HHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeec-----ccCCCCCeEEEecccc-hHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4689999999998654222 1111222111 1112111222322211 122222333222 246799999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCC-----CCChhhH
Q 004808 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC-----PRDLTSY 454 (729)
Q Consensus 380 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~-----P~s~~~y 454 (729)
+..++.|..+|...|+.+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|+|++||+|+. |.+...|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004808 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV-------AEQSITKWSKIIEQMEDQVAAILQEEREE 527 (729)
Q Consensus 455 iQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~e~~~ 527 (729)
+||+|||||. ..|.|++|+++.+..+++.|.+....+..+..+ +......+...++ ........ ......
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~~i~~~~~-~~~~~~~~-~~~~~~ 611 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIR-ATVAAEDK-AEYKTK 611 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC-----------------------
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHh-hccccccc-cccchh
Confidence 9999999997 689999999999888887777654322222222 1111111222221 10000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHH
Q 004808 528 RILRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIE 577 (729)
Q Consensus 528 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~ 577 (729)
.......+.......++..+...|...++.+ |+. ++.+++.+..|+
T Consensus 612 ~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~~~fe~----Aa~~Rd~i~~l~ 658 (661)
T 2d7d_A 612 AAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFER----AAELRDLLLELK 658 (661)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHC----
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHHH
Confidence 0000011233345566777777787777777 776 888888887765
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=2.4e-27 Score=272.22 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=114.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
+|+ .||++|..++|.++.|+ |+.+.||+|||++|++|++...+. +.+|+||+||++||.|.++++..+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~------G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT------GKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT------CSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 799 89999999999999998 999999999999999999655442 235999999999999999999999999
Q ss_pred cCceEEEEecCCChHHHHHHHhcCCCeEEECchHH-HHHHhccC-----ccCCC---CeeEEEEeCcchhh
Q 004808 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLD---DLAVLILDEADRLL 284 (729)
Q Consensus 223 ~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L-~~~l~~~~-----~~~l~---~i~~lVvDEah~ll 284 (729)
.++++++++||.+... ......+||+|+||++| +++|.... .+.+. .+.++||||||.|+
T Consensus 147 lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999988543 33445689999999999 89988653 34577 89999999999987
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=1.2e-25 Score=216.16 Aligned_cols=154 Identities=32% Similarity=0.553 Sum_probs=141.8
Q ss_pred CCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 004808 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (729)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~ 417 (729)
.+..+.|.++.+.. ..+...|..++....+.++||||+++..+..+...|...|+.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~~---~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVRE---ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECCG---GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECCh---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 44568888777653 467777888887777889999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccc
Q 004808 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (729)
Q Consensus 418 ~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (729)
+|..+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.|.+.++.++.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876654
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=216.25 Aligned_cols=158 Identities=27% Similarity=0.416 Sum_probs=139.7
Q ss_pred CCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 004808 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (729)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~ 417 (729)
.+..+.|.++.+... ..+...|..++....++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~~--~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHR--KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSSH--HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCCh--HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 355788888876532 346777888888777889999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCccccccCCCCccEEEEeCCC------CChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhcc
Q 004808 418 KQHVDFLIATDVAARGLDIIGVQTVINYACP------RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (729)
Q Consensus 418 ~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P------~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~ 491 (729)
+|..+|||||+++++|||+|++++||+||+| .++..|+||+||+||.|+.|.|++|+++.+...+..|.+.++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999887
Q ss_pred ccchhh
Q 004808 492 KLKSRI 497 (729)
Q Consensus 492 ~~~~~~ 497 (729)
.+....
T Consensus 162 ~~~~~~ 167 (175)
T 2rb4_A 162 SIKQLN 167 (175)
T ss_dssp CCEEEC
T ss_pred cccccC
Confidence 765433
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=3.4e-25 Score=215.06 Aligned_cols=154 Identities=29% Similarity=0.463 Sum_probs=139.6
Q ss_pred CCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc
Q 004808 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (729)
Q Consensus 339 ~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 418 (729)
+..+.|.++.+.. ..+...|..++....+.++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~---~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKD---NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCG---GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCh---HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 3467788877653 4677778888887778899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccC-cHHHHHHHHHHhccccch
Q 004808 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKS 495 (729)
Q Consensus 419 g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~~ 495 (729)
|..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. +...++.|.+.++..+..
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 157 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999976 578899999988877654
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=6.8e-25 Score=220.37 Aligned_cols=145 Identities=34% Similarity=0.477 Sum_probs=134.5
Q ss_pred hhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 004808 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (729)
Q Consensus 355 ~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGl 434 (729)
..+...+..++....++++||||+++..++.+...|...++.+..+||+|++.+|..+++.|++|..+|||||+++++||
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 95 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGL 95 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSS
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCC
Confidence 46777888888877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhh
Q 004808 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (729)
Q Consensus 435 Di~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (729)
|+|+|++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+..+..+.....+
T Consensus 96 di~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 96 DIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp SCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred CCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 99999999999999999999999999999999999999999999999999999998877765443
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=219.32 Aligned_cols=165 Identities=32% Similarity=0.469 Sum_probs=129.3
Q ss_pred HHhcCCCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeec
Q 004808 321 KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (729)
Q Consensus 321 ~~~l~~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~l 400 (729)
+.++.+|..+.+.........+.|.++.+.. ..+...|..++... +.++||||+++..++.++.+|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE---EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCG---GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh---HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4567788888776666667788888877653 45677777777654 4689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccC-cH
Q 004808 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DR 479 (729)
Q Consensus 401 hg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~-d~ 479 (729)
||+|++.+|..+++.|++|...|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHh
Q 004808 480 SLLKAIAKRA 489 (729)
Q Consensus 480 ~~l~~i~~~~ 489 (729)
.+++.|.+.+
T Consensus 165 ~~~~~l~~~l 174 (191)
T 2p6n_A 165 SVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=6.9e-25 Score=211.35 Aligned_cols=154 Identities=27% Similarity=0.456 Sum_probs=135.0
Q ss_pred CceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 004808 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (729)
Q Consensus 341 ~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 420 (729)
.+.|.++.+... ..+...|..++....++++||||+++..+..+...|...++.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~~--~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEE--EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESG--GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcc--hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 567777766532 237777888888777889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchh
Q 004808 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (729)
Q Consensus 421 ~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (729)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.++..+...
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 156 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEEC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887766543
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=4.7e-24 Score=224.71 Aligned_cols=155 Identities=32% Similarity=0.455 Sum_probs=136.3
Q ss_pred ceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCc
Q 004808 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421 (729)
Q Consensus 342 l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 421 (729)
+.+.++.+.. ..+...|..++....++++||||+++..++.+...|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~~---~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPV---RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCS---SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCH---HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 4455555443 4577778888877778999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhhh
Q 004808 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (729)
Q Consensus 422 ~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (729)
+|||||+++++|||||+|++||+|++|+++..|+||+|||||.|+.|.|++|+++.+...++.|.+.++..+.....+
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887764444
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=212.26 Aligned_cols=150 Identities=35% Similarity=0.541 Sum_probs=122.3
Q ss_pred CCCCceeEEEEeehhhhhhHHHHHHHHhhcc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH
Q 004808 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416 (729)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F 416 (729)
.+..+.|.++.+.. ..+...|..++... .+.++||||+++..+..+...|...|+.+..+||+|++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~---~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEE---SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCG---GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCc---HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 45678888887753 35666777777655 578999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhc
Q 004808 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490 (729)
Q Consensus 417 ~~g~~~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~ 490 (729)
++|..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877654
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=212.44 Aligned_cols=168 Identities=21% Similarity=0.172 Sum_probs=121.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHH-HHHHHHHHhh
Q 004808 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VHSMIEKIAQ 221 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q-~~~~~~~l~~ 221 (729)
.+...|+|+|.++++.++.++++++++|||+|||++|+++++..+........+.++|||+|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344579999999999999999999999999999999999998876543211234579999999999999 7888888765
Q ss_pred ccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCc-----cCCCCeeEEEEeCcchhhcCChHHHHH-HH
Q 004808 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEIH-EL 295 (729)
Q Consensus 222 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~-----~~l~~i~~lVvDEah~ll~~gf~~~i~-~i 295 (729)
. ++.+..++|+.........+...++|+|+||+.|..++..... +.+..+.+|||||||++...++...+. .+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 7788888887665444444455689999999999998876422 557889999999999998776555443 33
Q ss_pred HHhc-------------CcCceEEEEecc
Q 004808 296 VRLC-------------PKRRQTMLFSAT 311 (729)
Q Consensus 296 l~~~-------------~~~~q~il~SAT 311 (729)
+... .+..++|++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 156899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=3.3e-25 Score=214.70 Aligned_cols=155 Identities=33% Similarity=0.544 Sum_probs=136.1
Q ss_pred ceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCc
Q 004808 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421 (729)
Q Consensus 342 l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 421 (729)
+.|.++.+.. ...+...|..++....+.++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 4 i~~~~~~~~~--~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 4 IHQWYYRADD--LEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 4444444432 13456667777776667899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCccccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHhccccchhhh
Q 004808 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (729)
Q Consensus 422 ~vLVaTd~~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~ 498 (729)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++..+....+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999998877766654433
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.5e-22 Score=229.58 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=87.6
Q ss_pred cCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 143 LGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 143 ~g~~~pt~iQ~~~i~----~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
.|| .|+|+|.+++. .+..|+++++.+|||+|||++|++|++.. ++++||++||++|+.|+.+.+..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 467 79999999864 45679999999999999999999999764 34799999999999999987766
Q ss_pred HhhccCceEEEEecCCCh--------H------------------------HHHH---------------HHhcCCCeEE
Q 004808 219 IAQFTDIRCCLVVGGLST--------K------------------------MQET---------------ALRSMPDIVV 251 (729)
Q Consensus 219 l~~~~~i~v~~~~gg~~~--------~------------------------~~~~---------------~l~~~~dIvI 251 (729)
+ ++++..+.|.... . ..+. .....++|||
T Consensus 74 l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 74 L----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp G----TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred c----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 3 4555554443210 0 0000 0123479999
Q ss_pred ECchHHHHHHhccCcc------CCCCeeEEEEeCcchhh
Q 004808 252 ATPGRMIDHLRNSMSV------DLDDLAVLILDEADRLL 284 (729)
Q Consensus 252 ~TP~~L~~~l~~~~~~------~l~~i~~lVvDEah~ll 284 (729)
+||..|++.+...... .+....+|||||||+|.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999998865432111 24567899999999974
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.3e-22 Score=202.50 Aligned_cols=183 Identities=16% Similarity=0.212 Sum_probs=133.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 133 ~~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
++.+...+.......++++|.++++.+..|++++++|+||||||+++.+++++.+..... ...+++|+++|+++|+.|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESSHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccchHHHHHH
Confidence 333333344444456799999999999999999999999999999999999988765543 2345899999999999999
Q ss_pred HHHHHHHhhc-cCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchh-hcCChH-
Q 004808 213 HSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFS- 289 (729)
Q Consensus 213 ~~~~~~l~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~l-l~~gf~- 289 (729)
.+.+...... .+..++........ .....++|+|+|||+|++++.. .+.++++|||||||++ ++.+|.
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHH
Confidence 8887654332 23334332221110 0113478999999999999876 3789999999999996 777777
Q ss_pred HHHHHHHHhcCcCceEEEEecccchhHHHHHHHhcCCCe
Q 004808 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328 (729)
Q Consensus 290 ~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~l~~p~ 328 (729)
..+..++... +..|+++||||++.+. +...+...|+
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4555666655 4789999999999876 4444444443
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=2.3e-20 Score=213.96 Aligned_cols=281 Identities=16% Similarity=0.086 Sum_probs=181.3
Q ss_pred CCCCCcHHHHHHHH----HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 144 GYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 144 g~~~pt~iQ~~~i~----~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
|| .|+|+|.+.+. .+..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+.+.+..+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 34 58999998765 45679999999999999999999999972 457999999999999999999988
Q ss_pred hhccCceEEEEecCCCh---------------------------------HHHH------------------HHHhcCCC
Q 004808 220 AQFTDIRCCLVVGGLST---------------------------------KMQE------------------TALRSMPD 248 (729)
Q Consensus 220 ~~~~~i~v~~~~gg~~~---------------------------------~~~~------------------~~l~~~~d 248 (729)
....++++.++.|+... .... ......++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 77778888887764211 1111 12234689
Q ss_pred eEEECchHHHHHHhccCccC-CCCeeEEEEeCcchhhcCC----------------------------------------
Q 004808 249 IVVATPGRMIDHLRNSMSVD-LDDLAVLILDEADRLLELG---------------------------------------- 287 (729)
Q Consensus 249 IvI~TP~~L~~~l~~~~~~~-l~~i~~lVvDEah~ll~~g---------------------------------------- 287 (729)
|||+||+.|++.+.... +. .....+|||||||+|.+ .
T Consensus 151 IVV~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 151 VIALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp EEEEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEEeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999865432 32 24678999999999765 1
Q ss_pred ---------------hHHHHH----------------------------HHHH---------------------------
Q 004808 288 ---------------FSAEIH----------------------------ELVR--------------------------- 297 (729)
Q Consensus 288 ---------------f~~~i~----------------------------~il~--------------------------- 297 (729)
+...+. .++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 000000 0000
Q ss_pred -hcCcC-ceEEEEecccchhHHHHHHHhcCC-CeE-----EecCCCCCCCCCceeEEEEeehh-----h---h---hhHH
Q 004808 298 -LCPKR-RQTMLFSATLTEDVDELIKLSLTK-PLR-----LSADPSAKRPSTLTEEVVRIRRM-----R---E---VNQE 358 (729)
Q Consensus 298 -~~~~~-~q~il~SATl~~~v~~l~~~~l~~-p~~-----i~~~~~~~~~~~l~~~~~~~~~~-----~---~---~~k~ 358 (729)
.+... +.+|++|||+++ +..+....... +.. +.+.... . .+..+.+... . . ..-.
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~---~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--S---GSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--S---CEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--C---CceEEEEeCCCCCccccCCHHHHHHHH
Confidence 01122 688999999987 44333332222 221 1111111 1 1222222110 0 0 1111
Q ss_pred HHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc--CccccccCC
Q 004808 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT--DVAARGLDI 436 (729)
Q Consensus 359 ~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT--d~~~rGlDi 436 (729)
..+..++. ..++++|||++|+.....+... .+..+..-..+++ +..+++.|+.+...||+|| ..+.+|||+
T Consensus 383 ~~i~~l~~-~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~ 455 (551)
T 3crv_A 383 DYLLKIYF-QAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIEL 455 (551)
T ss_dssp HHHHHHHH-HCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCC
T ss_pred HHHHHHHH-hCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccc
Confidence 22333333 3467999999999999988863 3444443333455 3456777854445799998 699999999
Q ss_pred C---C--ccEEEEeCCCC
Q 004808 437 I---G--VQTVINYACPR 449 (729)
Q Consensus 437 ~---~--v~~VI~~d~P~ 449 (729)
| + ++.||...+|.
T Consensus 456 ~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 456 RNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp EETTEESEEEEEEESCCC
T ss_pred cccCCcceeEEEEEcCCC
Confidence 9 4 88999988875
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=5e-21 Score=200.73 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=125.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.|+|+|.++++.++.+.+.+++++||+|||+++++++...+... ..++|||+||++|+.|+.+.+..+.......
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 79999999999999998999999999999999988877665422 2379999999999999999999987666777
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEE
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~i 306 (729)
+..++++..... ......+|+|+||+.|.... ...+..+++|||||||++.+ ..+..++..++...+++
T Consensus 188 ~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 188 IKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (282)
T ss_dssp EEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEE
T ss_pred EEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEE
Confidence 888888765422 22356899999999886542 23467889999999999974 36667777777789999
Q ss_pred EEecccchhHH
Q 004808 307 LFSATLTEDVD 317 (729)
Q Consensus 307 l~SATl~~~v~ 317 (729)
+||||++....
T Consensus 257 ~lSATp~~~~~ 267 (282)
T 1rif_A 257 GLSGSLRDGKA 267 (282)
T ss_dssp EECSSCCTTST
T ss_pred EEeCCCCCcch
Confidence 99999986543
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=1.5e-17 Score=192.44 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=68.4
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~----~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+|.|.+.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----KLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----CCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 58999988874 566799999999999999999999999987542 347999999999999999999998876
Q ss_pred cCceEEEEecC
Q 004808 223 TDIRCCLVVGG 233 (729)
Q Consensus 223 ~~i~v~~~~gg 233 (729)
.++++..+.|+
T Consensus 78 ~~~~~~~l~gr 88 (620)
T 4a15_A 78 MKIRAIPMQGR 88 (620)
T ss_dssp SCCCEEECCCH
T ss_pred cCeEEEEEECC
Confidence 67777766654
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.9e-18 Score=174.05 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=110.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.|+++|.++++.++.++++|+++|||+|||.+++.++... +.++||++|+++|+.|+.+.+..+ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~----~~~ 159 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG----CGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhC----CCC
Confidence 6899999999999999999999999999999987766542 235999999999999999888763 677
Q ss_pred -EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceE
Q 004808 227 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (729)
Q Consensus 227 -v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~ 305 (729)
+..+.|+.. ...+|+|+||+.|...+... ...+.+|||||||++.+..+.. ++..++ ..++
T Consensus 160 ~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~~ 221 (237)
T 2fz4_A 160 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFR 221 (237)
T ss_dssp GEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSEE
T ss_pred eEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHHH----HHHhcc-CCEE
Confidence 777777654 25799999999987765431 3468899999999998776543 445554 5788
Q ss_pred EEEecccchh
Q 004808 306 MLFSATLTED 315 (729)
Q Consensus 306 il~SATl~~~ 315 (729)
+++|||+...
T Consensus 222 l~LSATp~r~ 231 (237)
T 2fz4_A 222 LGLTATFERE 231 (237)
T ss_dssp EEEEESCC--
T ss_pred EEEecCCCCC
Confidence 9999999753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=2.8e-18 Score=178.33 Aligned_cols=124 Identities=12% Similarity=0.209 Sum_probs=96.6
Q ss_pred hhHHHHHHHHhhcc--CCCeEEEEeCcHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcC-Cce-EEEEcCc
Q 004808 355 VNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDV 429 (729)
Q Consensus 355 ~~k~~~l~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-vLVaTd~ 429 (729)
..+...+..++... .+.++||||++...+..|..+|... |+.+..+||++++.+|..+++.|++| ... +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 45666666666544 5789999999999999999999885 99999999999999999999999999 677 7899999
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHHhcccccCCCccE--EEEEeccCc
Q 004808 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDND 478 (729)
Q Consensus 430 ~~rGlDi~~v~~VI~~d~P~s~~~yiQriGRagR~G~~G~--~i~l~~~~d 478 (729)
+++|||++++++||+||+||||..|+||+||++|.|+.+. ++.|++...
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999998765 466677653
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.80 E-value=7e-09 Score=119.67 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhh--HHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKT--AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT--~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
++.|..+++.++.++.+++.|++||||| ++++++++..+... .+.++++++||..+|.++.+.+..++...++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~----~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG----ERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS----CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc----CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999 56667776654211 24579999999999999988887765544432
Q ss_pred EEEEecCCChHHHHHHHhcCC-CeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceE
Q 004808 227 CCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~-dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~ 305 (729)
.... .+.... .... .++-.+|+.. . +... ......+++||||||+ |++ ...+..++..++...|+
T Consensus 227 ~~~~-~~~~~~------~~Tih~ll~~~~~~~-~-~~~~-~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 227 DEQK-KRIPED------ASTLHRLLGAQPGSQ-R-LRHH-AGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp SCCC-CSCSCC------CBTTTSCC-------------C-TTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred HHHH-hccchh------hhhhHhhhccCCCch-H-HHhc-cCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 1110 000000 0011 1222233321 1 1111 1122378899999999 554 45667788889999999
Q ss_pred EEEecc
Q 004808 306 MLFSAT 311 (729)
Q Consensus 306 il~SAT 311 (729)
|++.=+
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 988644
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.07 E-value=2.2e-05 Score=81.96 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHhhc--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 004808 354 EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (729)
Q Consensus 354 ~~~k~~~l~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~ 431 (729)
.+.|..+|..++.. ..+.+||||++.....+.+..+|...++.+..+.|.....++. -.++...|.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 45666666666543 3478999999999999999999999999999999986543321 1245556655577777
Q ss_pred cccC-----CCCccEEEEeCCCCChhhH-HHHhcccccCC----CccEEEEEeccCcHH
Q 004808 432 RGLD-----IIGVQTVINYACPRDLTSY-VHRVGRTARAG----REGYAVTFVTDNDRS 480 (729)
Q Consensus 432 rGlD-----i~~v~~VI~~d~P~s~~~y-iQriGRagR~G----~~G~~i~l~~~~d~~ 480 (729)
-|++ +.+.++||.||..||+..- +|.+-|+.|.| +.-.+|.|++.+...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 7776 6889999999999999986 99999988873 356788888887643
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=2e-05 Score=87.82 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=80.1
Q ss_pred HHcCCCCCcHHHHHHHHHHhcC----C-CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 004808 141 EALGYSKPTPIQAACIPLALTG----R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (729)
Q Consensus 141 ~~~g~~~pt~iQ~~~i~~ll~g----~-dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~ 215 (729)
.-+.|..+++-|.+++..++.. . .+++.|+.|||||.+ +..++..+..... ..+++++||...+..+.+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~----~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE----TGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC----CCEEEEESSHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC----ceEEEecCcHHHHHHHHhh
Confidence 3356889999999999877543 3 788999999999975 3555555554432 2589999999887665544
Q ss_pred HHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHH
Q 004808 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295 (729)
Q Consensus 216 ~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i 295 (729)
+ +..+..++. .+. +...+.+... .+.......+..+.+|||||++.+. ...+..+
T Consensus 94 ~-------~~~~~T~h~---------~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l 148 (459)
T 3upu_A 94 S-------GKEASTIHS---------ILK----INPVTYEENV-LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKIL 148 (459)
T ss_dssp H-------SSCEEEHHH---------HHT----EEEEECSSCE-EEEECSCCCCSSCSEEEESCGGGCC----HHHHHHH
T ss_pred h-------ccchhhHHH---------Hhc----cCcccccccc-hhcccccccccCCCEEEEECchhCC----HHHHHHH
Confidence 3 121111110 000 0000000000 0000112345678899999999653 3344556
Q ss_pred HHhcCcCceEEEEe
Q 004808 296 VRLCPKRRQTMLFS 309 (729)
Q Consensus 296 l~~~~~~~q~il~S 309 (729)
+..++...+++++.
T Consensus 149 ~~~~~~~~~~~~vG 162 (459)
T 3upu_A 149 LSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HHhccCCCEEEEEC
Confidence 66666555555554
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.97 E-value=2.3e-05 Score=89.47 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.+++.|..++..++.++.+++.|+.|+|||.+ +..++..+... +.+|++++||...+..+.+.+ +..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-----g~~Vl~~ApT~~Aa~~L~e~~-------~~~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-----GLEVGLCAPTGKAARRLGEVT-------GRT 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHH-------TSC
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-----CCeEEEecCcHHHHHHhHhhh-------ccc
Confidence 58899999999999999999999999999976 34444444332 235999999999887765533 111
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHH----HhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcC
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH----LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~----l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~ 302 (729)
... -.+|+.. +... ......+++||||||+.+. ...+..++..++..
T Consensus 256 a~T------------------------ih~ll~~~~~~~~~~-~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 256 AST------------------------VHRLLGYGPQGFRHN-HLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPG 306 (574)
T ss_dssp EEE------------------------HHHHTTEETTEESCS-SSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTT
T ss_pred HHH------------------------HHHHHcCCcchhhhh-hcccccCCEEEEcCccCCC----HHHHHHHHHhCcCC
Confidence 111 1111110 0010 1223467899999999764 34556677777777
Q ss_pred ceEEEEec
Q 004808 303 RQTMLFSA 310 (729)
Q Consensus 303 ~q~il~SA 310 (729)
.+++++.=
T Consensus 307 ~~lilvGD 314 (574)
T 3e1s_A 307 ARVLLVGD 314 (574)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEec
Confidence 77776643
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.96 E-value=6.1e-05 Score=87.13 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
+..+++.|..++..++.+.-+++.||+|+|||.+. ..++..+... .+.++||++||...+.++.+.+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS----SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc----CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 45689999999999998778889999999999863 4555555532 234699999999999998887764
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.85 E-value=5e-05 Score=88.27 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~d-vlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
.+.+-|.+|+..++..++ .||.||+|||||.+. ..++..++..+ .+|||++||...+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~~-----~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQG-----LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHTT-----CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhCC-----CeEEEEcCchHHHHHHHHHHHh
Confidence 478999999999998776 569999999999873 55555555443 3699999999999988877754
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=9.8e-05 Score=87.47 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
+..+++.|.+++..++.+.-++|.||+|||||.+. ..++..+... .+.++||++||...+.++.+.+..+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34678999999999998777899999999999763 4444444431 1236999999999999998888764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.83 E-value=0.00014 Score=85.96 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q 004808 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (729)
Q Consensus 145 ~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~ 218 (729)
...+++.|..++..++.+.-+++.||+|+|||.+. ..++..+... .+.++|+++||...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT----CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 34578999999999998877899999999999863 5555555542 234699999999999988887764
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.70 E-value=0.0011 Score=76.73 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhh
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~ 221 (729)
..+++-|.+++. .....++|.|+.|||||.+. +.-+.+++.... .++.++|+|++|+.++.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l-~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVL-VHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHH-HHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHH-HHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 468999999997 33567999999999999874 444444444322 3445799999999999999999887653
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.91 E-value=0.0069 Score=65.17 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=56.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+|+|..++..+...+-+++..+-+.|||.+.+..++..++.. ++..+++++||+..|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 68999999998775556688999999999987666555544442 3447999999999998888877776553
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.54 E-value=0.0088 Score=56.90 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEcCCCchhhHH
Q 004808 149 TPIQAACIPLAL---------TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 149 t~iQ~~~i~~ll---------~g~dvlv~a~TGsGKT~a 178 (729)
.+.|..++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 345655555443 367899999999999975
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.43 E-value=0.0065 Score=69.62 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~ 222 (729)
.|+|+|..++..+...+-+++..+-|+|||.+....++..++..+ +..++++.|+...|..+.+.+..+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~----~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK----DKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS----SCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 479999999987755677899999999999876655554444432 347999999999999988888777654
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.19 E-value=0.022 Score=54.63 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=26.4
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|+=.++.|++|+|||... +-++.++... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~~-----g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKLG-----KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHHT-----TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHHC-----CCeEEEEeecc
Confidence 455779999999999874 4444444333 23588888873
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.01 E-value=0.028 Score=58.93 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999975
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.01 E-value=0.02 Score=62.41 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=61.3
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l 243 (729)
=.++.|+.|+|||... ..++. . ..++|++||++++..+.+.+... +.
T Consensus 163 v~~I~G~aGsGKTt~I-~~~~~----~------~~~lVlTpT~~aa~~l~~kl~~~----~~------------------ 209 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-LSRVN----F------EEDLILVPGRQAAEMIRRRANAS----GI------------------ 209 (446)
T ss_dssp EEEEEECTTSCHHHHH-HHHCC----T------TTCEEEESCHHHHHHHHHHHTTT----SC------------------
T ss_pred EEEEEcCCCCCHHHHH-HHHhc----c------CCeEEEeCCHHHHHHHHHHhhhc----Cc------------------
Confidence 3568999999999863 22221 1 13699999999998776665321 10
Q ss_pred hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEecc
Q 004808 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 244 ~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
.....+-|.|.+.++.. ......-..++||||||-. +..+ .+..++...+. .+++++.-+
T Consensus 210 ~~~~~~~V~T~dsfL~~---~~~~~~~~~d~liiDE~sm-~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 210 IVATKDNVRTVDSFLMN---YGKGARCQFKRLFIDEGLM-LHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCCCTTTEEEHHHHHHT---TTSSCCCCCSEEEEETGGG-SCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred cccccceEEEeHHhhcC---CCCCCCCcCCEEEEeCccc-CCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 01113447776665432 1122223478999999984 4433 33334444443 555555443
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.91 E-value=0.013 Score=56.76 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=27.1
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|+=.++.|++|||||.+. +-++.++..+. .+|+|+.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~~g-----~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKIAK-----QKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHHTT-----CCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHHCC-----CEEEEEEecc
Confidence 444668999999999874 55555554433 3589998873
No 110
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.88 E-value=0.014 Score=72.67 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCce
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~ 226 (729)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+.........-++|||++|+..|..+.+.+.........
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~- 86 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV- 86 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh-
Confidence 5899999998753 8899999999999999865555555544322334557999999999999998888764321000
Q ss_pred EEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCcc--CC-CCeeEEEEeCcch
Q 004808 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV--DL-DDLAVLILDEADR 282 (729)
Q Consensus 227 v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~--~l-~~i~~lVvDEah~ 282 (729)
...........+..-..+-|+|-..++..+-..... .+ ..+ -|+||...
T Consensus 87 -----~~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f--~~~d~~~~ 138 (1232)
T 3u4q_A 87 -----QRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGF--RIADQTEG 138 (1232)
T ss_dssp -----HSTTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTC--EECCHHHH
T ss_pred -----cCcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCC--eeCCHHHH
Confidence 000111112222333567899998887665432111 12 123 37787653
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.88 E-value=0.0083 Score=59.56 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=51.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
|.=+++.|++|+|||++. +-++.++..+. .+|+++.|...- . . ...++...++.
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~~g-----~kVli~~~~~d~--r-~--~~~i~srlG~~--------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEYAD-----VKYLVFKPKIDT--R-S--IRNIQSRTGTS--------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHTT-----CCEEEEEECCCG--G-G--CSSCCCCCCCS---------------
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHhcC-----CEEEEEEeccCc--h-H--HHHHHHhcCCC---------------
Confidence 455678999999999874 55555554433 248888775421 0 0 00111111111
Q ss_pred HHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
...+.+.+...++..+... ..-..+++|||||++.+.
T Consensus 66 ----~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ----LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred ----ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 0123456666677766542 223457899999999753
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.045 Score=57.27 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
+.++++.||+|+|||++. -.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 467999999999999863 555555543
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.64 E-value=0.0068 Score=56.14 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=25.1
Q ss_pred CeeEEEEeCcchhhcCChHHHHHHHHHhcCcC-ceEEEEecccc
Q 004808 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLT 313 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~-~q~il~SATl~ 313 (729)
..++|||||.+.+.... ...+..+++.+... ..++++|+..+
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 34689999999865433 55566666654433 33255555543
No 114
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.53 E-value=0.02 Score=67.26 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc--c
Q 004808 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF--T 223 (729)
Q Consensus 146 ~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~--~ 223 (729)
..++|-|.+++.. ....++|.|..|||||.+. +.-+.+++... +.++.++|+|+.|+..|.++.+.+..+... .
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL-~~ri~~ll~~~-~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL-THRIAYLMAEK-HVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTT-CCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH-HHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 4689999999875 3568999999999999874 33344444322 234557999999999999998888776432 2
Q ss_pred CceEEEEe
Q 004808 224 DIRCCLVV 231 (729)
Q Consensus 224 ~i~v~~~~ 231 (729)
++.+..++
T Consensus 86 ~~~v~Tfh 93 (724)
T 1pjr_A 86 DVWISTFH 93 (724)
T ss_dssp TSEEEEHH
T ss_pred CcEEeeHH
Confidence 34454443
No 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.42 E-value=0.068 Score=58.32 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=70.6
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc--CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~--PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
-+++.|++|+|||+... -+...+... +.+|+++. +.|.-+ .+.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~-kLA~~l~~~-----G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d------ 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAG-KLAYFYKKR-----GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN------ 163 (433)
T ss_dssp EEEECCCTTSCHHHHHH-HHHHHHHHT-----TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC------
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHHc-----CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC------
Confidence 46689999999997632 222222222 22355544 444433 23344444445554432222211
Q ss_pred HHhcCCCeEEECchHHH-HHHhccCccCCCCeeEEEEeCcchhh---cCChHHHHHHHHHhcCcCceEEEEecccchhHH
Q 004808 242 ALRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLL---ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~-~~l~~~~~~~l~~i~~lVvDEah~ll---~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~ 317 (729)
|..+. ..+.. +....+++||||.+-++. +..+...+..+...+.+..-+++++|+...+..
T Consensus 164 ------------p~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 164 ------------PIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp ------------HHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred ------------HHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 22221 11221 223467899999998653 344666777777777666667888888766655
Q ss_pred HHHHHh
Q 004808 318 ELIKLS 323 (729)
Q Consensus 318 ~l~~~~ 323 (729)
..+..+
T Consensus 229 ~~a~~f 234 (433)
T 3kl4_A 229 DLASRF 234 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.24 E-value=0.014 Score=67.93 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhc---c
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF---T 223 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~---~ 223 (729)
.++|-|.+++.. .+..++|.|..|||||.+.+--+...+...+ .++.++|+|+.|+..|.++.+.+..+... .
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~ 77 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--YQARHIAAVTFTNKAAREMKERVGQTLGRKEAR 77 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC--CCHHHeEEEeccHHHHHHHHHHHHHHcCccccc
Confidence 478999999874 3678999999999999874333333332211 23457999999999999999988876432 2
Q ss_pred CceEEEEe
Q 004808 224 DIRCCLVV 231 (729)
Q Consensus 224 ~i~v~~~~ 231 (729)
++.+..++
T Consensus 78 ~~~v~Tfh 85 (673)
T 1uaa_A 78 GLMISTFH 85 (673)
T ss_dssp TSEEEEHH
T ss_pred CCEEEeHH
Confidence 34555443
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.18 E-value=0.025 Score=59.66 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 148 PTPIQAACIPLAL----TGR---DICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 148 pt~iQ~~~i~~ll----~g~---dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
+.|+|..++..+. .|+ -+++.||.|+|||.+. ..+...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHhC
Confidence 3577777765544 343 3889999999999763 444455543
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.11 E-value=0.095 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=17.7
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
+.+++.||+|+|||... ..+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 68999999999999753 3334443
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.94 E-value=0.083 Score=57.98 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=24.0
Q ss_pred CeeEEEEeCcchhhcC-ChHHHHHHHHHhcC-cCceEEEEec
Q 004808 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSA 310 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~il~~~~-~~~q~il~SA 310 (729)
...+|||||+|.+... .....+..+++.+. ...++|+.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3458999999998753 23445555555443 3445555443
No 120
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.78 E-value=0.028 Score=55.11 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=26.5
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
|+=.++.|++|+|||++. +-++.+...... +|+|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~~g~-----kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQFAKQ-----HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHTTC-----CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHHCCC-----EEEEEEeccC
Confidence 333458999999999874 555555544432 5899999763
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.74 E-value=0.12 Score=56.46 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=68.0
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEc--CcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~--PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~ 241 (729)
-++++|++|+|||++. ..+...+... +.+|+++. |.|.-+ ++.+..++...++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~~-----G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d------ 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQKR-----GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD------ 166 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHTT-----TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC------
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHHC-----CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC------
Confidence 4668999999999863 3333333322 22355554 445443 34455555556665543222211
Q ss_pred HHhcCCCeEEECchHHH-HHHhccCccCCCCeeEEEEeCcchhhc-CChHHHHHHHHHhcCcCceEEEEecccchhHHHH
Q 004808 242 ALRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (729)
Q Consensus 242 ~l~~~~dIvI~TP~~L~-~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l 319 (729)
|..++ +.+.. .....+++||||.+-++.. ......+..+.....+..-++++.||...+....
T Consensus 167 ------------p~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~ 231 (443)
T 3dm5_A 167 ------------AIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ 231 (443)
T ss_dssp ------------HHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred ------------HHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH
Confidence 21111 11111 0112466899999876532 2234455555555555556778888876665554
Q ss_pred HHHh
Q 004808 320 IKLS 323 (729)
Q Consensus 320 ~~~~ 323 (729)
+..+
T Consensus 232 a~~f 235 (443)
T 3dm5_A 232 ALAF 235 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.70 E-value=0.24 Score=50.14 Aligned_cols=17 Identities=29% Similarity=0.118 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999753
No 123
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.55 E-value=0.082 Score=51.77 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=26.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptre 207 (729)
|.=.++.|++|+|||... +..+.++.... .+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~~g-----~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIYAK-----QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHTT-----CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHHcC-----CceEEEEeccC
Confidence 445679999999999763 55555554432 35899999653
No 124
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.33 Score=51.04 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
.....++||||+|. ++......+..++...+....+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34677999999999 44445566777777766655555555443
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.34 E-value=0.15 Score=54.36 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+.+++.||+|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 4689999999999975
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.31 E-value=0.043 Score=54.10 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999975
No 127
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.25 E-value=0.056 Score=53.57 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|+=.++.|++|+|||.+. |-.+.+..... .+++|+.|..
T Consensus 19 g~l~v~~G~MgsGKTT~l-L~~~~r~~~~g-----~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTEL-MRRVRRFQIAQ-----YKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHHTTT-----CCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHCC-----CeEEEEeecC
Confidence 555678999999999874 55555544432 3589988875
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.14 E-value=0.43 Score=45.78 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEec
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SA 310 (729)
....+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45669999999997542 24445555665555555555443
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.01 E-value=0.2 Score=45.57 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.1
Q ss_pred HhcCCCEEEEcCCCchhhHH
Q 004808 159 ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+.++++.|++|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34567999999999999975
No 130
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.99 E-value=0.064 Score=61.43 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccC
Q 004808 147 KPTPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~--g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~ 224 (729)
.+|.-|.+++..++. ..-.++.|+-|.|||.+..+.+ ..+. ..++|++|+.+-+..+.+.. ..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~--------~~~~vtAP~~~a~~~l~~~~----~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA--------GRAIVTAPAKASTDVLAQFA----GE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS--------SCEEEECSSCCSCHHHHHHH----GG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH--------hCcEEECCCHHHHHHHHHHh----hC--
Confidence 689999999998887 2346799999999997643333 3321 13699999987755433321 10
Q ss_pred ceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCce
Q 004808 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (729)
Q Consensus 225 i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q 304 (729)
.|-+..|..++.. +...++||||||=.+- ...+..++.. ..
T Consensus 240 -----------------------~i~~~~Pd~~~~~--------~~~~dlliVDEAAaIp----~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLAS--------DEQADWLVVDEAAAIP----APLLHQLVSR----FP 280 (671)
T ss_dssp -----------------------GCCBCCHHHHHHS--------CCCCSEEEEETGGGSC----HHHHHHHHTT----SS
T ss_pred -----------------------CeEEeCchhhhhC--------cccCCEEEEEchhcCC----HHHHHHHHhh----CC
Confidence 1344566554321 2347799999998763 4445555542 33
Q ss_pred EEEEecccc
Q 004808 305 TMLFSATLT 313 (729)
Q Consensus 305 ~il~SATl~ 313 (729)
.++||.|+.
T Consensus 281 ~v~~~tTv~ 289 (671)
T 2zpa_A 281 RTLLTTTVQ 289 (671)
T ss_dssp EEEEEEEBS
T ss_pred eEEEEecCC
Confidence 588888875
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.99 E-value=0.061 Score=55.63 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
.++++.||+|+|||.+.
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999753
No 132
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.94 E-value=0.25 Score=46.13 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
...+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999975
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.92 E-value=0.13 Score=54.73 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 56899999999999975
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.86 E-value=0.25 Score=50.34 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=28.6
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhcCCCEEEEcCCCchhhHH
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQ-AACIPL--ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~--ll~g~dvlv~a~TGsGKT~a 178 (729)
..+|.++.-.....+.|...-. .+++ ...+.. +..++.+++.||+|+|||..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3457777655565555543210 0111 111111 12356799999999999975
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.51 E-value=0.16 Score=52.87 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
....+|||||+|.+........+..++...+...++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3677999999999862223455566666655555555543
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.45 E-value=0.29 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
...+++.|++|+|||... -.+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 367999999999999753 3334443
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.18 E-value=0.16 Score=54.01 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999975
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.17 E-value=0.44 Score=45.89 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=40.3
Q ss_pred CCeeEEEEeCcchhhcCCh--HHHHHHHHHhcCcCceEEEEecccchhHHHHHH
Q 004808 270 DDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf--~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~ 321 (729)
..+++|||||+-..+.+++ .+.+..++...|...-+|+.+--+++.+.+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 5789999999988776664 466778888888777777777778887776653
No 139
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.92 E-value=0.19 Score=52.25 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+.++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.54 E-value=0.9 Score=44.00 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=13.5
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 141
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.29 E-value=0.19 Score=48.37 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
|+=.++.|++|||||.- ++-.+.+..... .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~-----~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ-----YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT-----CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC-----CeEEEEccc
Confidence 55566899999999965 455665554443 358898887
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.59 E-value=0.24 Score=51.73 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=28.6
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCEEEEcCCCchhhHH
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL-----TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~ll-----~g~dvlv~a~TGsGKT~a 178 (729)
..+|.++.-...+.+.|...=. .|. ..|.++ ..+.+|+.||+|+|||..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4567777666666666544210 010 011111 135699999999999975
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.38 E-value=0.84 Score=48.11 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999975
No 144
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.33 E-value=0.52 Score=55.37 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=65.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-ccccCCCCccEEEE
Q 004808 370 TSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVIN 444 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~-~rGlDi~~v~~VI~ 444 (729)
+.++||.+|++..+......+ ...++.+..+||+++..++..++..+.+|..+|+|+|... ...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 578999999998777665554 4458999999999999999999999999999999999754 45678889999886
Q ss_pred eCCC
Q 004808 445 YACP 448 (729)
Q Consensus 445 ~d~P 448 (729)
=...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5544
No 145
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.05 E-value=0.78 Score=48.39 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEE
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~ 308 (729)
.....+|||||+|.+... ....+..++...+....+|+.
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEE
Confidence 345679999999998532 234444555544444433333
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.71 E-value=0.56 Score=48.98 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999975
No 147
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.55 E-value=1.2 Score=41.57 Aligned_cols=71 Identities=13% Similarity=0.234 Sum_probs=53.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||.|+++..|..++..+.. .++.+..++|+.+.......+ .+..+|+|+|. .+. .++++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA--RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC--TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh--cCCCccc
Confidence 45799999999999888887765 478899999998876654433 24578999993 222 2678888
Q ss_pred eeEEEE
Q 004808 272 LAVLIL 277 (729)
Q Consensus 272 i~~lVv 277 (729)
+.+||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 988885
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.52 E-value=0.44 Score=50.54 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
.+.+|+.||+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999753
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.51 E-value=0.33 Score=50.87 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=25.1
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999998642 2345556666655555555544
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.43 E-value=1.6 Score=43.41 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46789999999999975
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.41 E-value=0.54 Score=48.10 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
++.+++.||+|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999975
No 152
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.35 E-value=1.2 Score=41.09 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=53.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.++||.|+++..+..+++.+.. .++.+..++|+.+.......+ .+...|+|+|. .+.. ++++..+
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gld~~~~ 104 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR--GIDIENI 104 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT--TCCCSCC
T ss_pred CcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCchhcC
Confidence 3699999999999998888876 378899999998766554433 24578999992 2333 6778888
Q ss_pred eEEEEeC
Q 004808 273 AVLILDE 279 (729)
Q Consensus 273 ~~lVvDE 279 (729)
.+||.-.
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887633
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.24 E-value=1.2 Score=48.84 Aligned_cols=112 Identities=18% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HhhccCceEEE-EecCCChHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCL-VVGGLSTKMQ 239 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~-l~~~~~i~v~~-~~gg~~~~~~ 239 (729)
|.-+++.|++|+|||... +-+...+.... +..|+++..--. ..|+...+.. .. ++.... ..|.......
T Consensus 203 G~liiI~G~pG~GKTtl~-l~ia~~~~~~~----g~~Vl~~s~E~s-~~~l~~r~~~~~~---~~~~~~l~~g~l~~~~~ 273 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFA-LNIAQNVATKT----NENVAIFSLEMS-AQQLVMRMLCAEG---NINAQNLRTGKLTPEDW 273 (454)
T ss_dssp TCEEEEECCTTSCHHHHH-HHHHHHHHHHS----SCCEEEEESSSC-HHHHHHHHHHHHH---TCCHHHHHTSCCCHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHHhC----CCcEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhcCCCCHHHH
Confidence 456779999999999754 44443333211 113677653211 2333333321 11 111100 1222332221
Q ss_pred HH------HHhcCCCeEEE-----CchHHHHHHhccCccCCCCeeEEEEeCcchhhc
Q 004808 240 ET------ALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (729)
Q Consensus 240 ~~------~l~~~~dIvI~-----TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (729)
.. .+ ....+.|. |++.+...+... ..-..+++||||+.+.+..
T Consensus 274 ~~~~~a~~~l-~~~~l~i~d~~~~s~~~i~~~~~~l--~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 274 GKLTMAMGSL-SNAGIYIDDTPSIRVSDIRAKCRRL--KQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHH-HSSCEEEECCTTCCHHHHHHHHHHH--HTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEccHHHhcc
Confidence 11 11 22346554 344444443321 1123578999999999874
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.08 E-value=0.78 Score=47.28 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998532 2344555566555555555443
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.90 E-value=1.5 Score=48.90 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCeeEEEEeCcchhhc--CChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 270 DDLAVLILDEADRLLE--LGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~--~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
....+|||||+|.|.. .+....+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 3456999999999874 23345555555542 34567777664
No 156
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.81 E-value=0.65 Score=49.77 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+|+.||+|+|||.+
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 47899999999999975
No 157
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.70 E-value=0.46 Score=49.64 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+.+++.||+|+|||..
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 6799999999999975
No 158
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.66 E-value=0.81 Score=47.11 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
++.+++.||+|+|||+.
T Consensus 49 ~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CSEEEEECSSSSSHHHH
T ss_pred CceEEEECCCCcCHHHH
Confidence 56799999999999975
No 159
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.63 E-value=1.6 Score=41.59 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=53.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.++||.|+++..+..++..+... ++.+..++|+.+.......+ .+...|+|+|. .+.. ++++..+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~v 123 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPAI 123 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCcccC
Confidence 36999999999999988888763 78889999998876554433 24578999992 2333 6778888
Q ss_pred eEEEE
Q 004808 273 AVLIL 277 (729)
Q Consensus 273 ~~lVv 277 (729)
.+||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88876
No 160
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.31 E-value=1.8 Score=47.32 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEE-EecCCChHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL-VVGGLSTKMQE 240 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~-~~gg~~~~~~~ 240 (729)
|.-++++|++|+|||... +-+...+.... +..|+++..- .-..|+...+.... .++...- ..|..+.....
T Consensus 200 G~l~ii~G~pg~GKT~la-l~ia~~~a~~~----g~~vl~~slE-~~~~~l~~R~~~~~--~~i~~~~l~~g~l~~~~~~ 271 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFA-LTIAQNAALKE----GVGVGIYSLE-MPAAQLTLRMMCSE--ARIDMNRVRLGQLTDRDFS 271 (444)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHHTT----CCCEEEEESS-SCHHHHHHHHHHHH--TTCCTTTCCGGGCCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHhC----CCeEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhCCCCCHHHHH
Confidence 445779999999999654 44444433221 1236776542 11234443332211 1211111 12333322211
Q ss_pred H------HHhcCCCeEEE-----CchHHHHHHhccCccCCCCeeEEEEeCcchhhcC
Q 004808 241 T------ALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (729)
Q Consensus 241 ~------~l~~~~dIvI~-----TP~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (729)
. .+. ...+.|. |+..|...+... ..-..+++||||..+.|...
T Consensus 272 ~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l--~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 272 RLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRL--VSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHH--HHHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEcChhhcCCC
Confidence 1 122 2345553 334444433321 10125789999999998643
No 161
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.14 E-value=1.1 Score=47.99 Aligned_cols=80 Identities=9% Similarity=0.004 Sum_probs=65.7
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc----cccCCCCcc
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA----RGLDIIGVQ 440 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~----rGlDi~~v~ 440 (729)
..+.++||.+|++..+..+...+.. .++.+..+||+.+..++...+..+..|..+|+|+|.-.- .-+++..++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3467899999999999998888877 588999999999999998899999999999999996321 125667888
Q ss_pred EEEEeCC
Q 004808 441 TVINYAC 447 (729)
Q Consensus 441 ~VI~~d~ 447 (729)
+||.=..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886443
No 162
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.83 E-value=1.6 Score=40.31 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=53.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||.|+++..+..++..+.. .++.+..++|+.+.......+ .+...|+|+|. .+.. ++++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR--GIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT--TCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc--CCCccc
Confidence 34699999999999888888775 377889999998866554433 34578999993 2333 677778
Q ss_pred eeEEEEe
Q 004808 272 LAVLILD 278 (729)
Q Consensus 272 i~~lVvD 278 (729)
+.+||.-
T Consensus 99 ~~~Vi~~ 105 (165)
T 1fuk_A 99 VSLVINY 105 (165)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8887763
No 163
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.82 E-value=1.5 Score=42.59 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=53.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.++||.||++.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|||. .+.. ++++..+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidi~~v 100 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR--GLDIPQV 100 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC--SSSCCCB
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc--CCCCccC
Confidence 36999999999999888887763 78889999998877655443 24578999992 2333 6778888
Q ss_pred eEEEE
Q 004808 273 AVLIL 277 (729)
Q Consensus 273 ~~lVv 277 (729)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88773
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.79 E-value=0.29 Score=48.46 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=29.3
Q ss_pred CCeeEEEEeCcchhhc-----CChHHHHHHHHHhcCcCceEEEEecccchh
Q 004808 270 DDLAVLILDEADRLLE-----LGFSAEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~-----~gf~~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
...++||+||.-.+++ ......+..++..+...-.+++++.-....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4567999999998875 444555666666664444466666655443
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.62 E-value=1.4 Score=46.19 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
....++||||+|.|... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999988542 3445566666666555555443
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.55 E-value=0.85 Score=44.31 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|.-+++.|++|+|||..
T Consensus 23 G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TCEEEEECSTTSSHHHH
T ss_pred CCEEEEEcCCCCCHHHH
Confidence 56678999999999975
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.34 E-value=1.4 Score=43.07 Aligned_cols=18 Identities=22% Similarity=-0.010 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|.-+++.||+|+|||...
T Consensus 24 G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TSEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456779999999999764
No 168
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.10 E-value=1.9 Score=47.75 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=27.9
Q ss_pred eEEEEeCcchhhcC-----C-----hHHHHHHHHHhcCcCceEEEEecccch
Q 004808 273 AVLILDEADRLLEL-----G-----FSAEIHELVRLCPKRRQTMLFSATLTE 314 (729)
Q Consensus 273 ~~lVvDEah~ll~~-----g-----f~~~i~~il~~~~~~~q~il~SATl~~ 314 (729)
.+|+|||+|.+... + ....+..++........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 58999999998742 1 234445555555566677888888654
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.02 E-value=1.3 Score=45.49 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=23.5
Q ss_pred CeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
...+|||||+|.+... ....+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999998642 1333445555555555555544
No 170
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.01 E-value=2.3 Score=45.60 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=30.0
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|++.+=-....+.|... .+..|--++...+ -..+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 456788887445555554432 1111111221111 1137899999999999975
No 171
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.75 E-value=2 Score=52.81 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-ccccccCCCCccEEE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-VAARGLDIIGVQTVI 443 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-~~~rGlDi~~v~~VI 443 (729)
.+.++||.|||...+......|. ..++.+..+++..+..++..++..+..|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 45689999999988877666554 3468899999999999999999999999999999995 445567888888888
Q ss_pred E
Q 004808 444 N 444 (729)
Q Consensus 444 ~ 444 (729)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.52 E-value=1.1 Score=46.35 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~S 309 (729)
.....++||||||.|.... .+.+..+++.-|...-+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3567899999999986432 334455555544444344433
No 173
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.34 E-value=0.85 Score=49.83 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=30.9
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|++.+--..+.+.|.+. .+..|--++...+ -.-+.+|+.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 456788887666666665442 1111111111110 1247899999999999975
No 174
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.10 E-value=2 Score=40.05 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=58.7
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.++||.|+++..+..++..+.. .++.+..++|+.+.......+ .+...|+|+|.- +. .++++..+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~~ 100 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERV 100 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGGC
T ss_pred CcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhhC
Confidence 4699999999999988888876 378889999998876554433 245789999932 22 25667777
Q ss_pred eEEEEeCcchhhcCChHHHHHHHHHh
Q 004808 273 AVLILDEADRLLELGFSAEIHELVRL 298 (729)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~il~~ 298 (729)
.+||.=.. .+.....+..+-+.
T Consensus 101 ~~Vi~~d~----p~~~~~~~qr~GR~ 122 (172)
T 1t5i_A 101 NIAFNYDM----PEDSDTYLHRVARA 122 (172)
T ss_dssp SEEEESSC----CSSHHHHHHHHHHH
T ss_pred CEEEEECC----CCCHHHHHHHhccc
Confidence 78775332 23344444444433
No 175
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.07 E-value=1 Score=46.41 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
...+++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999975
No 176
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.06 E-value=1.4 Score=54.04 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=65.8
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cccccCCCCc
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARGLDIIGV 439 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~~rGlDi~~v 439 (729)
..+.++||.+|++..+..+...|.. .++.+..+||+++..++...+..+..|..+|||+|.- +.. +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3467899999999999999998887 5679999999999988889999999999999999962 222 567789
Q ss_pred cEEEEeCC
Q 004808 440 QTVINYAC 447 (729)
Q Consensus 440 ~~VI~~d~ 447 (729)
++||.=..
T Consensus 198 ~~lViDEa 205 (1104)
T 4ddu_A 198 DFVFVDDV 205 (1104)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCC
Confidence 99886443
No 177
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.70 E-value=2.3 Score=41.04 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~rGlDi~~ 438 (729)
..++||.|+++..+..+...+... ++.+..++|+.+...+... +..+..+|+|+|.-. ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999988887766544 7889999999987665443 445677999999521 23467788
Q ss_pred ccEEEEeC
Q 004808 439 VQTVINYA 446 (729)
Q Consensus 439 v~~VI~~d 446 (729)
+++||.=.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88888644
No 178
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.59 E-value=0.94 Score=49.54 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+|+.||+|+|||+.
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999975
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.49 E-value=0.61 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=17.0
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLE 185 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~ 185 (729)
|.-++++|++|+|||...+-.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 456789999999999654333333
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.48 E-value=0.67 Score=45.63 Aligned_cols=50 Identities=22% Similarity=0.031 Sum_probs=28.1
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
.|.-+++.|++|+|||... +.++..+.... ..++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~~-----~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLKMG-----EPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHHTT-----CCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhcC-----CeEEEEEcc-CCHHHHHHHHH
Confidence 3566789999999999763 33333333221 236665533 22344444444
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.23 E-value=1.4 Score=47.79 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=28.8
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|++.+=-..+.+.|... .+..|--++...+ -..+.+|+.||+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 446788887544544444321 1111111111111 1236799999999999975
No 182
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.00 E-value=1.9 Score=47.62 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=37.8
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHh
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~ 220 (729)
.|..+++.+-||||||++. ..++... .+ .+|||+|+...|.|+++.+..|.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~~-------~~-p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAERH-------AG-PVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHHS-------SS-CEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHHh-------CC-CEEEEeCCHHHHHHHHHHHHhhC
Confidence 3556889999999999863 2222221 11 38999999999999999998764
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.85 E-value=0.93 Score=49.65 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
..+|++||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3689999999999975
No 184
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.15 E-value=4.6 Score=45.87 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHHHhcCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 156 i~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
-..+..|..+++.||+|+|||.. +-++..++
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred cccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 34455788999999999999975 33444443
No 185
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.49 E-value=0.39 Score=49.37 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
.+++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999975
No 186
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.38 E-value=4.2 Score=40.33 Aligned_cols=75 Identities=15% Similarity=0.246 Sum_probs=54.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c--ccccCC
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A--ARGLDI 436 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~--~rGlDi 436 (729)
..+.++||.++++..+..+...+.. .++.+..++|+.+...+...+ .+..+|+|+|.- + ..++++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 3456799999999988877766554 388999999998876554433 246789999952 1 245778
Q ss_pred CCccEEEEeC
Q 004808 437 IGVQTVINYA 446 (729)
Q Consensus 437 ~~v~~VI~~d 446 (729)
..+++||.=.
T Consensus 185 ~~~~~lViDE 194 (249)
T 3ber_A 185 RALKYLVMDE 194 (249)
T ss_dssp TTCCEEEECS
T ss_pred cccCEEEEcC
Confidence 8888888533
No 187
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.29 E-value=1.7 Score=41.26 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=50.9
Q ss_pred CchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCC
Q 004808 172 GSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMP 247 (729)
Q Consensus 172 GsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~ 247 (729)
.+.|... ++-++... . .+.++||.|+++..+..++..+.. .++.+..++|+.+.......+ .+..
T Consensus 29 ~~~K~~~-L~~ll~~~---~---~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~ 97 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT---G---KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKS 97 (185)
T ss_dssp GGGHHHH-HHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSS
T ss_pred cHHHHHH-HHHHHHhc---C---CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 4566543 34444431 1 234699999999999888888775 378889999987654433222 3457
Q ss_pred CeEEECchHHHHHHhccCccCCCCeeEEEE
Q 004808 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (729)
Q Consensus 248 dIvI~TP~~L~~~l~~~~~~~l~~i~~lVv 277 (729)
.|+|+|. .+.. ++++..+.+||.
T Consensus 98 ~vLvaT~-----~~~~--Gldi~~~~~VI~ 120 (185)
T 2jgn_A 98 PILVATA-----VAAR--GLDISNVKHVIN 120 (185)
T ss_dssp SEEEEEC-------------CCCSBSEEEE
T ss_pred eEEEEcC-----hhhc--CCCcccCCEEEE
Confidence 8999993 2222 567778888776
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.87 E-value=1.4 Score=46.94 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=13.6
Q ss_pred CCEEE--EcCCCchhhHH
Q 004808 163 RDICG--SAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv--~a~TGsGKT~a 178 (729)
..+++ .|++|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45778 89999999975
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.60 E-value=1.4 Score=45.84 Aligned_cols=63 Identities=13% Similarity=-0.017 Sum_probs=32.4
Q ss_pred HHHHHhc-----CCCEEEEcCCCchhhHHhhhhhhHHHhcC-CCCCCCcEEEEEcCcHHH-HHHHHHHHHH
Q 004808 155 CIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYR-PKRIPAIRVLILTPTREL-AVQVHSMIEK 218 (729)
Q Consensus 155 ~i~~ll~-----g~dvlv~a~TGsGKT~a~~lpil~~l~~~-~~~~~~~~vLIl~PtreL-a~Q~~~~~~~ 218 (729)
.+..++. |.-+++.|++|+|||... +.+...+... ..+..+.+++++.--..+ ..++...+..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555664 456779999999999754 3333332211 000113457777544321 2344444443
No 190
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.43 E-value=5.1 Score=42.56 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=54.9
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCC
Q 004808 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLD 270 (729)
Q Consensus 195 ~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~ 270 (729)
.+.++||.|+++..+..+++.+.. .++.+..++|+.+.......+ .+..+|+|||. .+.. ++++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 345799999999999998888876 378889999998866554333 34578999994 3333 68888
Q ss_pred CeeEEEE
Q 004808 271 DLAVLIL 277 (729)
Q Consensus 271 ~i~~lVv 277 (729)
.+.+||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8988875
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.28 E-value=3.6 Score=42.56 Aligned_cols=49 Identities=14% Similarity=-0.094 Sum_probs=27.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~ 217 (729)
|.-++++|++|+|||... +-+..++... +..|+++..- .-..|+...+.
T Consensus 68 G~l~li~G~pG~GKTtl~-l~ia~~~a~~-----g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFA-LKQAKNMSDN-----DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHHH-HHHHHHHHTT-----TCEEEEEESS-SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHc-----CCeEEEEECC-CCHHHHHHHHH
Confidence 456789999999999654 4443333322 1357777633 22334444443
No 192
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.23 E-value=3.1 Score=40.53 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=52.9
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCC
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDI 436 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~rGlDi 436 (729)
..+.++||.++++..+..+...+... ++.+..++|+.+...+...+ ...+|+|+|.-. ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 34568999999999998887777653 67889999999877655443 257899999631 234566
Q ss_pred CCccEEEE
Q 004808 437 IGVQTVIN 444 (729)
Q Consensus 437 ~~v~~VI~ 444 (729)
..+++||.
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 77888775
No 193
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.99 E-value=8.6 Score=42.89 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=57.1
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||.|+|+.-|..++..+..... .++.+..++|+.+.......+ .+..+|+|||. .+.. ++++..
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc--CCCccc
Confidence 44799999999999999998887532 378889999998876554433 34578999994 3333 678888
Q ss_pred eeEEEEeC
Q 004808 272 LAVLILDE 279 (729)
Q Consensus 272 i~~lVvDE 279 (729)
+.+||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88888544
No 194
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.70 E-value=26 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=28.9
Q ss_pred chHHHHHHhccCccCCCCeeEEEEeCcchhhc---CChHHHHHHHHHhcCcCceEEEEecc
Q 004808 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---LGFSAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 254 P~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~---~gf~~~i~~il~~~~~~~q~il~SAT 311 (729)
...++..+..... .--+|||||+|.+.. ..+...+..+....+ ... ++++++
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEES
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcC
Confidence 3445555543211 133899999999864 356666666655442 333 444444
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.53 E-value=1.9 Score=47.58 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+.+++.||+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999975
No 196
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=82.25 E-value=3 Score=42.92 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=52.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.++||.|+|+.-+..+++.+.. .++.+..++|+.+...+...+ .+..+|+|||. .+.. ++++..+
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~--Gidi~~v 97 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR--GLDIPQV 97 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC--STTCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc--Cccccce
Confidence 3599999999998888777754 478899999998876655443 34578999993 2333 6778888
Q ss_pred eEEEE
Q 004808 273 AVLIL 277 (729)
Q Consensus 273 ~~lVv 277 (729)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88874
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.17 E-value=1.5 Score=56.18 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=29.5
Q ss_pred HHHHhc------CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 156 IPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 156 i~~ll~------g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
+..++. ++.+++++|+|+|||...+..+.+. ..+ +.+++++..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea-~~~-----G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA-QRE-----GKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH-HTT-----TCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH-HHc-----CCcEEEEEcc
Confidence 566666 6889999999999998653333333 322 3357777755
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.10 E-value=2.2 Score=50.81 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
..++++.||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35799999999999975
No 199
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.87 E-value=8.6 Score=40.00 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=33.2
Q ss_pred eeEEEEeCcchhh-cCChHHHHHHHHHhcCcCceEEEEecccchhHHHHHHHh
Q 004808 272 LAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (729)
Q Consensus 272 i~~lVvDEah~ll-~~gf~~~i~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 323 (729)
.+++++|.+.++- ...+...+..+...+.+...++++.+|...++...+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 3467788876643 334555666666666666677888888777666665544
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.44 E-value=1 Score=40.65 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=18.0
Q ss_pred HHHhcCCCEEEEcCCCchhhHH
Q 004808 157 PLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 157 ~~ll~g~dvlv~a~TGsGKT~a 178 (729)
..+..+.++++.|++|+|||..
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3345678999999999999975
No 201
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.40 E-value=4.4 Score=39.78 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=54.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-cccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~-rGlDi~~ 438 (729)
.+..+||.+|++..+..+...+. ..++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999998887766554 448899999999988776555432 478999995 222 3457788
Q ss_pred ccEEEEeC
Q 004808 439 VQTVINYA 446 (729)
Q Consensus 439 v~~VI~~d 446 (729)
+++||.=.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88888533
No 202
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.93 E-value=5.2 Score=42.31 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=54.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||.|+++.-|..+++.+... ++.+..++|+.+.......+ .+..+|+|||. .+.. ++++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS--SCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc--CCCccC
Confidence 347999999999999988888763 67889999998876654433 34578999993 3333 788889
Q ss_pred eeEEEE
Q 004808 272 LAVLIL 277 (729)
Q Consensus 272 i~~lVv 277 (729)
+.+||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999884
No 203
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.51 E-value=12 Score=42.06 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=57.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||.|||+.-|..+++.+..... .++.+..++|+.+.......+ .+..+|+|||. .+.. ++++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCccc
Confidence 45799999999999999998887532 378889999998876554433 34578999994 3333 678888
Q ss_pred eeEEEEeCc
Q 004808 272 LAVLILDEA 280 (729)
Q Consensus 272 i~~lVvDEa 280 (729)
+.+||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 998886543
No 204
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=80.34 E-value=19 Score=37.42 Aligned_cols=77 Identities=12% Similarity=0.240 Sum_probs=57.5
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCC
Q 004808 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLD 270 (729)
Q Consensus 195 ~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~ 270 (729)
...++||.|+++.-|..+++.+.. .++.+..++|+.+.......+ .+..+|+|+|. .+.. ++++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR--GIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS--SCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc--CCCcc
Confidence 345799999999999988888876 367889999998866554433 24578999993 3333 78889
Q ss_pred CeeEEEEeCcch
Q 004808 271 DLAVLILDEADR 282 (729)
Q Consensus 271 ~i~~lVvDEah~ 282 (729)
.+.+||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999998755543
No 205
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.32 E-value=6 Score=37.42 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cc-cccCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGLDII 437 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~~-rGlDi~ 437 (729)
.+.++||.+|++..+..+...+... ++.+..++|+.+.......+ .+..+|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999988887766543 67888999998866543322 356789999962 22 334677
Q ss_pred CccEEEE
Q 004808 438 GVQTVIN 444 (729)
Q Consensus 438 ~v~~VI~ 444 (729)
.+++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 206
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.30 E-value=3.8 Score=45.70 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=62.6
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc------cccccCCCCccEEE
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGVQTVI 443 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI 443 (729)
.+.+||.+|++..+......|...++.+..+||..+..++..++..+..|..+||++|.- +...+....+.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 478999999999999999999999999999999999999999999999999999999852 12234445677766
Q ss_pred E
Q 004808 444 N 444 (729)
Q Consensus 444 ~ 444 (729)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 4
No 207
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.10 E-value=4 Score=46.24 Aligned_cols=75 Identities=4% Similarity=0.044 Sum_probs=62.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH--hcCCceEEEEcCc-c----------ccccCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF--RKQHVDFLIATDV-A----------ARGLDI 436 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F--~~g~~~vLVaTd~-~----------~rGlDi 436 (729)
.+.+||.+|++..+......|...|+.+..++|+++..++..++..+ ..+..+||++|.- + ...+++
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 56899999999999999999998999999999999999999888888 5788999999972 1 223345
Q ss_pred CCccEEEE
Q 004808 437 IGVQTVIN 444 (729)
Q Consensus 437 ~~v~~VI~ 444 (729)
..+.+||.
T Consensus 164 ~~i~~iVi 171 (591)
T 2v1x_A 164 RRFTRIAV 171 (591)
T ss_dssp TCEEEEEE
T ss_pred cCCcEEEE
Confidence 57777774
No 208
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.39 E-value=4.4 Score=39.69 Aligned_cols=74 Identities=8% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-cccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~-rGlDi~~ 438 (729)
.+.++||.+|++..+..+...+... ++.+..++|+..... ....+..+..+|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999988887777543 567778888765433 23445567789999993 233 3466777
Q ss_pred ccEEEEe
Q 004808 439 VQTVINY 445 (729)
Q Consensus 439 v~~VI~~ 445 (729)
+++||.=
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 8888753
No 209
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=78.30 E-value=2.6 Score=45.86 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=46.6
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
.++||+||++.-|..+++.+... ++++..++|............+..+|+|||. .+.. ++++. +.+||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM--GANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC--CTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe--eeccC-ceEEE
Confidence 46999999999999998888764 7888999986544443333345689999993 3333 56777 77776
No 210
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.29 E-value=6.8 Score=40.08 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=13.5
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
++-+.+.+++|+|||..
T Consensus 98 ~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SEEEEEECCTTTTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44566889999999975
No 211
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=78.27 E-value=2.1 Score=44.91 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEE-EecCCChHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL-VVGGLSTKMQE 240 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~-~~gg~~~~~~~ 240 (729)
|.=+++.|++|+|||... +-+..++... +..|+|+..- .-..|+...+..... ++...- ..|..+... +
T Consensus 46 G~LiiIaG~pG~GKTt~a-l~ia~~~a~~-----g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~~e-~ 115 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLM-MNMVLSALND-----DRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLDDDQ-W 115 (338)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHHT-----TCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCCHHH-H
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHc-----CCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCCHHH-H
Confidence 455779999999999754 4444333332 2357777542 223344444322211 111111 123333222 2
Q ss_pred HHH------hcCCCeEEE-Cc----hHHHHHHhccCccCCCCeeEEEEeCcchhh
Q 004808 241 TAL------RSMPDIVVA-TP----GRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (729)
Q Consensus 241 ~~l------~~~~dIvI~-TP----~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (729)
..+ .....|.|. +| ..|...+.... -....+.+||||-.+.|.
T Consensus 116 ~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~-~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 116 ENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK-SQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH-HHCTTEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH-HhcCCCCEEEEechHHhc
Confidence 111 112345543 33 34444333210 001168899999999875
No 212
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.85 E-value=7.5 Score=40.76 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=54.7
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~rGlDi~~ 438 (729)
+.++||.||++..+..+...+... ++.+..++|+.+....... +..+..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999988887766554 7889999999987665443 445778999999521 23466788
Q ss_pred ccEEEEe
Q 004808 439 VQTVINY 445 (729)
Q Consensus 439 v~~VI~~ 445 (729)
+++||.=
T Consensus 153 ~~~vViD 159 (391)
T 1xti_A 153 IKHFILD 159 (391)
T ss_dssp CSEEEEC
T ss_pred cCEEEEe
Confidence 8888853
No 213
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.83 E-value=4.1 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=18.1
Q ss_pred HHHHHhc-----CCCEEEEcCCCchhhHHh
Q 004808 155 CIPLALT-----GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~-----g~dvlv~a~TGsGKT~a~ 179 (729)
.+..++. |.-+++.|++|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 3455554 356779999999999754
No 214
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.32 E-value=8.2 Score=40.87 Aligned_cols=70 Identities=11% Similarity=0.266 Sum_probs=53.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.++||.|+++..+..+++.+.. .++.+..++|+.+.......+ .+...|+|+|. .+.. ++++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR--GLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS--SCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC--cCCcccC
Confidence 4799999999999988888776 377889999998866544333 34578999994 3333 6888899
Q ss_pred eEEEE
Q 004808 273 AVLIL 277 (729)
Q Consensus 273 ~~lVv 277 (729)
.+||.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98885
No 215
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.77 E-value=7.7 Score=40.89 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=53.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||+|+++.-+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+. .++++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 347999999999999988888764 67888999998866554333 34578999993 222 2678888
Q ss_pred eeEEEE
Q 004808 272 LAVLIL 277 (729)
Q Consensus 272 i~~lVv 277 (729)
+.+||.
T Consensus 327 ~~~Vi~ 332 (400)
T 1s2m_A 327 VNVVIN 332 (400)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 988885
No 216
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.35 E-value=6.4 Score=45.25 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=58.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH---h-cCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL---R-SMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||+|+|+..|..+.+.+... ++.+..++|+.+.......+ . +..+|+|||. .+.. ++++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~--GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE--GLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST--TCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC--CcccCC
Confidence 347999999999998888887763 78888899888766554442 2 4579999994 2333 788889
Q ss_pred eeEEEEeCcchh
Q 004808 272 LAVLILDEADRL 283 (729)
Q Consensus 272 i~~lVvDEah~l 283 (729)
+++||+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999888754
No 217
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.62 E-value=7.5 Score=40.19 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=53.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||+||++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+.. ++++..
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCccc
Confidence 346899999999999988888763 77889999998866554333 34578999993 2233 567778
Q ss_pred eeEEEEe
Q 004808 272 LAVLILD 278 (729)
Q Consensus 272 i~~lVvD 278 (729)
+.+||.-
T Consensus 307 ~~~Vi~~ 313 (367)
T 1hv8_A 307 LNCVINY 313 (367)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 218
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=75.59 E-value=4.8 Score=43.57 Aligned_cols=67 Identities=7% Similarity=0.021 Sum_probs=47.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~l 275 (729)
.++||+||++.-|..+++.+... ++++..++|+...........+..+|+|||. .+.. ++++. +..|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcEE
Confidence 46999999999999988888764 7889999987443333333345689999993 3444 45555 4444
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.36 E-value=2 Score=50.35 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=13.6
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
.+++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 499999999999975
No 220
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.20 E-value=3 Score=46.38 Aligned_cols=39 Identities=23% Similarity=-0.026 Sum_probs=25.7
Q ss_pred HHHHHcCCCCCcHHHHHHHHHH-hcCCCEEEEcCCCchhhHH
Q 004808 138 RACEALGYSKPTPIQAACIPLA-LTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 138 ~~l~~~g~~~pt~iQ~~~i~~l-l~g~dvlv~a~TGsGKT~a 178 (729)
..|..+|. +++.+...+... -.|..++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445553 344444455443 4577899999999999975
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=75.00 E-value=6.8 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.++++.|++|+|||.+
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 56899999999999975
No 222
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.89 E-value=5.3 Score=38.91 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=49.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----ccc--ccCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR--GLDII 437 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~~r--GlDi~ 437 (729)
.+.++||.+|++..+..+...+... ++.+..++|+.+.......+ +..+|+|+|.- +.+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999888887777654 47888999987765544333 46789999952 122 36677
Q ss_pred CccEEEEe
Q 004808 438 GVQTVINY 445 (729)
Q Consensus 438 ~v~~VI~~ 445 (729)
.+++||.=
T Consensus 171 ~~~~lViD 178 (236)
T 2pl3_A 171 DLQMLVLD 178 (236)
T ss_dssp TCCEEEET
T ss_pred cccEEEEe
Confidence 78887753
No 223
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.83 E-value=9 Score=45.13 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
++.+++.||+|+|||+.
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 56799999999999975
No 224
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=74.78 E-value=4.7 Score=38.16 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHH
Q 004808 148 PTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~--dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~ 212 (729)
..+-|..++..++... -.++.+.-|++||...+.-++...-. .+.+|.||+|+..-....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----QGREVQIIAADRRSQMNM 96 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEECSTTHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----cCeEEEEEcCchHHHHHH
Confidence 3467888888887754 45589999999998754333333222 234699999998775543
No 225
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=74.69 E-value=9.5 Score=41.12 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=52.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCeeE
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~ 274 (729)
+||.|+++.-|..+++.+.. .++.+..++|+.........+ .+...|+|||. .+.. ++++..+.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCCE
Confidence 99999999999988888775 378889999998876554443 24578999994 3333 688888888
Q ss_pred EEE
Q 004808 275 LIL 277 (729)
Q Consensus 275 lVv 277 (729)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 226
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=74.24 E-value=6.5 Score=46.08 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=55.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHh-------hccCceEEEEecCCChHHHHHHHhc---------CCCeEEECchHHHH
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIA-------QFTDIRCCLVVGGLSTKMQETALRS---------MPDIVVATPGRMID 259 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~-------~~~~i~v~~~~gg~~~~~~~~~l~~---------~~dIvI~TP~~L~~ 259 (729)
+..+||.+|++.-+..+++.+...+ ...++.+..++|+.+...+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4579999999999999888887532 2257889999999988777655532 347999993
Q ss_pred HHhccCccCCCCeeEEEE
Q 004808 260 HLRNSMSVDLDDLAVLIL 277 (729)
Q Consensus 260 ~l~~~~~~~l~~i~~lVv 277 (729)
.+.. ++++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 2333 677888887763
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.85 E-value=17 Score=39.14 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.0
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+-+++.+++|+|||+.
T Consensus 99 ~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTT 114 (425)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3466889999999975
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.77 E-value=4.9 Score=47.09 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred eeEEEEeCcchhhcC------ChH----HHHHHHHHhcCcCceEEEEecccchh
Q 004808 272 LAVLILDEADRLLEL------GFS----AEIHELVRLCPKRRQTMLFSATLTED 315 (729)
Q Consensus 272 i~~lVvDEah~ll~~------gf~----~~i~~il~~~~~~~q~il~SATl~~~ 315 (729)
-.+|+|||+|.+... +.. ..+...+..+....+++++-||-.++
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh
Confidence 458999999998731 111 22333344445556788888886543
No 229
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.42 E-value=6.9 Score=41.06 Aligned_cols=25 Identities=24% Similarity=-0.001 Sum_probs=18.0
Q ss_pred HHHHHhc-----CCCEEEEcCCCchhhHHh
Q 004808 155 CIPLALT-----GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~-----g~dvlv~a~TGsGKT~a~ 179 (729)
.+..+|. |.-+.+.||+|||||...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455554 345679999999999753
No 230
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=73.39 E-value=5.6 Score=38.47 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc------cccccCCCCc
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGV 439 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~------~~rGlDi~~v 439 (729)
.+.++||.++++..+..+...+... ++.+..++|+.+...+...+ . ...+|+|+|.- ....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999888887764 67888899887765443333 2 34789999952 1345677888
Q ss_pred cEEEEeC
Q 004808 440 QTVINYA 446 (729)
Q Consensus 440 ~~VI~~d 446 (729)
++||.=.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8887533
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.29 E-value=9 Score=36.13 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c-ccccCCCCcc
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIGVQ 440 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~-~rGlDi~~v~ 440 (729)
.+.++||.+|++..+..+...+... ++.+..++|+.+.......+. ...+|+|+|.- + ...+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999888888765 467888999887655443332 25789999952 2 2346677888
Q ss_pred EEEEeC
Q 004808 441 TVINYA 446 (729)
Q Consensus 441 ~VI~~d 446 (729)
+||.=.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888543
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=72.40 E-value=12 Score=40.62 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.2
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-+++++++|+|||++.
T Consensus 102 vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4668899999999763
No 233
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.12 E-value=9.3 Score=43.89 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=57.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH---h-cCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL---R-SMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||.|+|+..|..+.+.+.. .++.+..++|+.+.......+ . +..+|+|||. .+.. ++++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~--GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE--GLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT--TCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc--CccCCC
Confidence 34799999999999888888776 377888889888766554442 2 4578999992 2333 788889
Q ss_pred eeEEEEeCcchh
Q 004808 272 LAVLILDEADRL 283 (729)
Q Consensus 272 i~~lVvDEah~l 283 (729)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999998887653
No 234
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.11 E-value=5.7 Score=38.23 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=46.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCCC
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDII 437 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~rGlDi~ 437 (729)
..+.++||.++++..+..+...+.. .++.+..++|+.+.......+ . ..+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999988877776654 477888999987755443322 2 37899999522 3456677
Q ss_pred CccEEEEeC
Q 004808 438 GVQTVINYA 446 (729)
Q Consensus 438 ~v~~VI~~d 446 (729)
.+++||.=.
T Consensus 155 ~~~~iViDE 163 (224)
T 1qde_A 155 KIKMFILDE 163 (224)
T ss_dssp TCCEEEEET
T ss_pred hCcEEEEcC
Confidence 788887533
No 235
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=71.27 E-value=2.3 Score=46.17 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=32.3
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~ 210 (729)
...++++.|+||||||... .+++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-----g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-----GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-----TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-----CCcEEEEeCCCchhH
Confidence 3578999999999999864 4455554443 235899999988853
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.07 E-value=5.9 Score=43.63 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=20.8
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEE
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl 202 (729)
-+++.|++|+|||+. +.+|..++... +++|+|.
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll~~~----~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQFEQQ----GKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHHT----TCCEEEE
T ss_pred EEEEECCCcccHHHH--HHHHHHHhhhc----CCeEEEe
Confidence 366999999999985 44454444322 2346665
No 237
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.01 E-value=7.9 Score=41.52 Aligned_cols=18 Identities=17% Similarity=-0.053 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|.-+++.|++|+|||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 355779999999999754
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=71.00 E-value=3.4 Score=43.63 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|.-+++.||+|+|||.. ++.++..+... +.+|+++.+-.
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~~-----gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQKM-----GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEeccc
Confidence 45677999999999975 45555444332 22477776543
No 239
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=70.04 E-value=5.2 Score=46.05 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=46.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEE
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~l 275 (729)
+.++||+||++.-|..+++.+... ++++..++|............+..+|+|||. .+.. ++++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcEE
Confidence 346999999999998888877653 7889999985322222222234579999993 3444 56666 7666
Q ss_pred E
Q 004808 276 I 276 (729)
Q Consensus 276 V 276 (729)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 240
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.79 E-value=1.5 Score=47.70 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=32.7
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|++++--....+.|... .+..|.-++...++ ..+.+|+.||+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 456799998777766665432 12222222222211 136899999999999975
No 241
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=72.49 E-value=0.95 Score=42.16 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=48.8
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||.|+++..+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+.. ++++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR--GIDIPD 98 (170)
Confidence 346999999999998888877653 67788889987655443333 23467999992 2222 566666
Q ss_pred eeEEEE
Q 004808 272 LAVLIL 277 (729)
Q Consensus 272 i~~lVv 277 (729)
+.+||.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 766664
No 242
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=69.23 E-value=20 Score=38.18 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=59.8
Q ss_pred CCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEec--------CCChHHHHHH
Q 004808 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG--------GLSTKMQETA 242 (729)
Q Consensus 171 TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~g--------g~~~~~~~~~ 242 (729)
..++|... ++-++....... .+.++||.++++..+..+.+.+... ++.+..++| +.+.......
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~ 411 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRK---QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLI 411 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHC---TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccC---CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHH
Confidence 45566544 345555543211 2346999999999998888888764 788889998 5554433322
Q ss_pred H----hcCCCeEEECchHHHHHHhccCccCCCCeeEEEEeCc
Q 004808 243 L----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 243 l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (729)
+ .+...|+|+|. .+.. ++++..+.+||+=+.
T Consensus 412 ~~~F~~~~~~vLv~T~-----~~~~--Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 412 LDEFARGEFNVLVATS-----VGEE--GLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHHHHTSCSEEEECG-----GGGG--GGGSTTCCEEEESSC
T ss_pred HHHHhcCCceEEEECC-----cccc--CCCchhCCEEEEeCC
Confidence 2 24578999993 2233 678888888885443
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.01 E-value=5.1 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHHHHhc--CCCEEEEcCCCchhhHH
Q 004808 152 QAACIPLALT--GRDICGSAITGSGKTAA 178 (729)
Q Consensus 152 Q~~~i~~ll~--g~dvlv~a~TGsGKT~a 178 (729)
+..++..++. |.-+++.||||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444444443 34577999999999975
No 244
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=68.13 E-value=12 Score=36.76 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=51.3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCCCCc
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGV 439 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~rGlDi~~v 439 (729)
+.++||.+|++..+..+...+.. .++.+..++|+.+.......+ ....+|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 45899999999988887766653 357788889988765544333 3467899999621 234577888
Q ss_pred cEEEEeC
Q 004808 440 QTVINYA 446 (729)
Q Consensus 440 ~~VI~~d 446 (729)
++||.=.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8888543
No 245
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=67.33 E-value=5.4 Score=49.20 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=41.0
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCC------CCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRP------KRIPAIRVLILTPTRELAVQVHSMIEKI 219 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~------~~~~~~~vLIl~PtreLa~Q~~~~~~~l 219 (729)
..+|.|.-|||||.+...-++..|+..+ ......++|+|+=|+..|..+.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999886555666655321 2234567999999998888877776653
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.84 E-value=7.7 Score=45.45 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=31.0
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|.+++.-..+.+.|... .+..|.-++... +-..+.+|+.||+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 345688887777777776543 111111111100 01136799999999999975
No 247
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.67 E-value=6 Score=43.09 Aligned_cols=37 Identities=19% Similarity=-0.011 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
|.-+++.|++|+|||... +-+..++... +..|++++.
T Consensus 197 G~liiIaG~pG~GKTtla-l~ia~~~a~~-----g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFA-LKQAKNMSDN-----DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHH-HHHHHHHHHT-----TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHHc-----CCEEEEEEC
Confidence 455779999999999754 4444444332 235777754
No 248
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=66.00 E-value=8.2 Score=41.96 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=47.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
.++||.||++.-|.++++.+.. .++.+..++|............+..+|+|||. .+.. ++++.. .+||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEEE
Confidence 3699999999999988888765 37788888887654322222234579999993 3444 566666 6655
No 249
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=65.86 E-value=3.4 Score=42.81 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 154 ACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 154 ~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
.++..+..+.++++.||+|+|||..
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHH
Confidence 3344555688999999999999975
No 250
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.52 E-value=5.3 Score=43.36 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
..+++.|++|+|||...
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36789999999999753
No 251
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=64.96 E-value=5.4 Score=38.56 Aligned_cols=32 Identities=28% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 147 ~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
.-+.-|..++..+-.|.-+.+.||+|||||+.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 34455677788787888888999999999974
No 252
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=64.85 E-value=4.3 Score=42.90 Aligned_cols=20 Identities=40% Similarity=0.348 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCchhhHH
Q 004808 159 ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a 178 (729)
+..|..+++.||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34588999999999999974
No 253
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.69 E-value=6.5 Score=37.77 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=48.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc--------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-ccc
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGL 434 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~-rGl 434 (729)
.+.++||.++++..+..+...+... ++.+..++|+.+...... .+ ....+|+|+|. .+. ..+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999888877665433 678888898876443211 11 24578999995 222 245
Q ss_pred CCCCccEEEE
Q 004808 435 DIIGVQTVIN 444 (729)
Q Consensus 435 Di~~v~~VI~ 444 (729)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6677888775
No 254
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.60 E-value=7.7 Score=39.64 Aligned_cols=70 Identities=14% Similarity=0.046 Sum_probs=48.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------c-cccCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A-RGLDII 437 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~-rGlDi~ 437 (729)
+..+||.+||+..+..+...+... ++.+..++|+...... .....+|||+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999887766543 4667777776653211 13456899999632 1 357888
Q ss_pred CccEEEEeC
Q 004808 438 GVQTVINYA 446 (729)
Q Consensus 438 ~v~~VI~~d 446 (729)
.+.+||.=.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 999988543
No 255
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.45 E-value=19 Score=35.72 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=51.8
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cc--ccccCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VA--ARGLDII 437 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~--~rGlDi~ 437 (729)
.+.++||.+|++..+..+...+.. .++.+..++|+.........+ ..| .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999988887766654 467788899988766544333 334 78999994 22 2346778
Q ss_pred CccEEEEe
Q 004808 438 GVQTVINY 445 (729)
Q Consensus 438 ~v~~VI~~ 445 (729)
.+.+||.=
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88888753
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=64.25 E-value=6.3 Score=43.59 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=27.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~ 216 (729)
|.-+++.|++|+|||... +-++.++.... +..|+++.-- +-..|+...+
T Consensus 242 G~l~li~G~pG~GKT~la-l~~a~~~a~~~----g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFV-RQQALQWGTAM----GKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHH-HHHHHHHTTTS----CCCEEEEESS-SCHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHH-HHHHHHHHHhc----CCcEEEEecc-CCHHHHHHHH
Confidence 456779999999999754 44444443221 2246766532 2233444443
No 257
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.72 E-value=4.5 Score=42.15 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=19.9
Q ss_pred hcCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 160 LTGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
..|..+++.|+||||||+. +-++..++
T Consensus 169 ~~g~~v~i~G~~GsGKTTl--l~~l~g~~ 195 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY--IKSIMEFI 195 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH--HHHGGGGS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 3588999999999999974 44444443
No 258
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=63.69 E-value=38 Score=36.93 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=50.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCCee
Q 004808 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (729)
Q Consensus 198 ~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~ 273 (729)
..+|++....-+..+.+.+.. .+.++..++|+.+.......+ .+..+|+|||+..+-. ++++..+.
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------ccccccCc
Confidence 344555556555556555554 345888999988765543322 3457899999776644 78889999
Q ss_pred EEEEeCcc
Q 004808 274 VLILDEAD 281 (729)
Q Consensus 274 ~lVvDEah 281 (729)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988776
No 259
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=63.42 E-value=8.3 Score=40.45 Aligned_cols=18 Identities=39% Similarity=0.283 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
....+++.||+|+|||.+
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999985
No 260
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=63.03 E-value=7.3 Score=43.11 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 149 TPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 149 t~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
..+=..++-.+..+.++++.||+|+|||..
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344455666677889999999999999974
No 261
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=63.00 E-value=13 Score=42.18 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=47.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
.++||.|+|+.-|..+++.+... ++++..++|............+..+|+|||. .+.. ++++. +.+||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEEE
Confidence 36999999999999988888763 7788888886433333333345689999994 3444 56664 66653
No 262
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=62.72 E-value=15 Score=40.59 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=47.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-----ccc-c-CCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~-----~rG-l-Di~~ 438 (729)
+.++||.||++..+......+.. .++.+..+||+.+...+...+. ...+|+|+|.-. ..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999887776665544 4899999999987655433322 136799998532 222 4 6778
Q ss_pred ccEEEEeC
Q 004808 439 VQTVINYA 446 (729)
Q Consensus 439 v~~VI~~d 446 (729)
+++||.=.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88888543
No 263
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=62.64 E-value=20 Score=37.28 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~rGlDi~~ 438 (729)
.+.++||.||++..+..+...+.. .++.+..++|+.+..+....+. ..+|+|+|.-. ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999988877766543 4788999999998776655543 46799998421 23455677
Q ss_pred ccEEEEeC
Q 004808 439 VQTVINYA 446 (729)
Q Consensus 439 v~~VI~~d 446 (729)
+++||.=.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 88888543
No 264
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=62.54 E-value=3 Score=39.06 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=15.8
Q ss_pred hcCCCEEEEcCCCchhhHH
Q 004808 160 LTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a 178 (729)
+.|+-++++||+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566788999999999975
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=62.19 E-value=4.2 Score=38.76 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.|+-+++.||+|+|||.. +-+|..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467789999999999975 44444443
No 266
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=61.85 E-value=4.7 Score=40.13 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=16.2
Q ss_pred hcCCCEEEEcCCCchhhHH
Q 004808 160 LTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a 178 (729)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467899999999999974
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.79 E-value=3.3 Score=41.64 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCchhhHH
Q 004808 160 LTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a 178 (729)
..|.-+++.||||||||+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3566788999999999975
No 268
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.72 E-value=12 Score=37.76 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
...+++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 269
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=61.12 E-value=9.1 Score=43.97 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=63.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHh--hccCceEEEEecC--------CChHHHHHHHh----cCCCeEEECchHHHHHH
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIA--QFTDIRCCLVVGG--------LSTKMQETALR----SMPDIVVATPGRMIDHL 261 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~--~~~~i~v~~~~gg--------~~~~~~~~~l~----~~~dIvI~TP~~L~~~l 261 (729)
+.++||.++++..+..+.+.+.... ...++.+..++|+ .+...+...+. +..+|+|||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 3469999999999999988887531 1236888899998 77665544432 3578999993 22
Q ss_pred hccCccCCCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 262 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 262 ~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
. .++++..+.+||.=. +.+.....++.+-+.-.....+++++..-
T Consensus 475 ~--~GIDip~v~~VI~~d----~p~s~~~~~Qr~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 475 E--EGLDIKECNIVIRYG----LVTNEIAMVQARGRARADESTYVLVAHSG 519 (699)
T ss_dssp C--TTSCCCSCCCCEEES----CCCCHHHHHHHHTTSCSSSCEEEEEEESS
T ss_pred c--cCCccccCCEEEEeC----CCCCHHHHHHHcCCCCCCCceEEEEEeCC
Confidence 2 367888888887322 33444555555544322334455555443
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=60.62 E-value=47 Score=36.61 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
.+++++++|+|||..+
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999763
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.93 E-value=12 Score=47.54 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~ 242 (729)
+-+.+.+|.|||||+.. ++++....... ..++++.+--+|.... +..+ |+++
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~~g-----~~~~~i~~e~~~~~~~---~~~~----Gv~~--------------- 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQREG-----KTCAFIDAEHALDPIY---ARKL----GVDI--------------- 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHHTT-----CCEEEECTTSCCCHHH---HHHT----TCCG---------------
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHhcC-----CeEEEEecCCCCCHHH---HHHc----CCCH---------------
Confidence 55789999999999874 67776554433 3478888766554332 3333 3321
Q ss_pred HhcCCCeEEECchHHHHHHhccC-ccCCCCeeEEEEeCcchhhcC------------C-----hHHHHHHHHHhcCcCce
Q 004808 243 LRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLEL------------G-----FSAEIHELVRLCPKRRQ 304 (729)
Q Consensus 243 l~~~~dIvI~TP~~L~~~l~~~~-~~~l~~i~~lVvDEah~ll~~------------g-----f~~~i~~il~~~~~~~q 304 (729)
.+++|+-|..--++|.-.. .+.-..+++||||.+-.+... | +...+..+...+.+..-
T Consensus 1484 ----~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~ 1559 (1706)
T 3cmw_A 1484 ----DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 1559 (1706)
T ss_dssp ----GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCc
Confidence 1255666643222221100 111235679999999887632 1 12223344444455555
Q ss_pred EEEEecccchhH
Q 004808 305 TMLFSATLTEDV 316 (729)
Q Consensus 305 ~il~SATl~~~v 316 (729)
+++|...+...+
T Consensus 1560 ~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1560 LLIFINQIRMKI 1571 (1706)
T ss_dssp EEEEEECBC---
T ss_pred EEEEeecccccc
Confidence 777777765544
No 272
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.39 E-value=20 Score=37.08 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.1
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+-+++.+++|+|||+.
T Consensus 106 ~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTS 121 (320)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3466899999999975
No 273
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=59.22 E-value=24 Score=40.69 Aligned_cols=75 Identities=25% Similarity=0.330 Sum_probs=52.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhc--------------------------------cCceEEEEecCCChHHHHHHHh
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQF--------------------------------TDIRCCLVVGGLSTKMQETALR 244 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~--------------------------------~~i~v~~~~gg~~~~~~~~~l~ 244 (729)
.++||.+|++.-+..++..+...... ....+..++|+.+...+.....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 46999999999999888888764211 1234788999998776654432
Q ss_pred ----cCCCeEEECchHHHHHHhccCccCCCCeeEEEEe
Q 004808 245 ----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (729)
Q Consensus 245 ----~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVvD 278 (729)
+...|||||. .+.. ++++..+.+||-+
T Consensus 333 ~f~~g~~~vlvaT~-----~l~~--Gidip~~~~VI~~ 363 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----TLAA--GVNLPARTVIIGD 363 (715)
T ss_dssp HHHTTCSCEEEECG-----GGGG--SSCCCBSEEEECC
T ss_pred HHHcCCCeEEEECh-----HHhc--ccCCCceEEEEeC
Confidence 4578999993 3333 6778888776643
No 274
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.93 E-value=7.7 Score=41.23 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
.+.++++.|+||+|||...-. ++..+.. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM-----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT-----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH-----CCCEEEEEeCCcCH
Confidence 567899999999999975433 3333332 23458888887654
No 275
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.93 E-value=19 Score=42.10 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=52.3
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-c-----------
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-A----------- 430 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-~----------- 430 (729)
...+.+++|.|+|...|.+.+.++. ..|+.++.+.|+++..+|.... ..+|+++|+- +
T Consensus 121 aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~ 194 (844)
T 1tf5_A 121 ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVL 194 (844)
T ss_dssp HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhc
Confidence 3456789999999999888776654 4589999999999987665543 3689999961 1
Q ss_pred -ccccCCCCccEEEE
Q 004808 431 -ARGLDIIGVQTVIN 444 (729)
Q Consensus 431 -~rGlDi~~v~~VI~ 444 (729)
...+.+.++.++|.
T Consensus 195 ~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 195 YKEQMVQRPLHFAVI 209 (844)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred chhhhcccCCCEEEE
Confidence 12356677777763
No 276
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=58.52 E-value=18 Score=44.01 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=55.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCC----ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-cccccC-CCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGL----AAL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLD-IIG 438 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~----~~~----~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-~~rGlD-i~~ 438 (729)
.+.++||.+|++..+..+...|.. .++ .+..+||+++...+......+.. .+|||+|.- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 356899999999988887766653 466 88999999999888888888877 899999962 111111 557
Q ss_pred ccEEEE
Q 004808 439 VQTVIN 444 (729)
Q Consensus 439 v~~VI~ 444 (729)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.52 E-value=3.9 Score=37.28 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
++++|++|||||+.
T Consensus 4 I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 4 ILITGMPGSGKSEF 17 (179)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999985
No 278
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=58.45 E-value=25 Score=40.39 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=53.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHH---HHHHHh---cCCCeEEECchHHHHHHhccCccCCCCe
Q 004808 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM---QETALR---SMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (729)
Q Consensus 199 vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~---~~~~l~---~~~dIvI~TP~~L~~~l~~~~~~~l~~i 272 (729)
.+|+++++.-+.++++.+.. .++.+..++|+.+... ....+. +..+|+|||. .+.. ++++ .+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~--GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM--GLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS--SCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC--CcCc-Cc
Confidence 35668888888888777775 3788999999998763 344444 3479999994 3333 6788 89
Q ss_pred eEEEEeCcchh
Q 004808 273 AVLILDEADRL 283 (729)
Q Consensus 273 ~~lVvDEah~l 283 (729)
.+||.-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998777654
No 279
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.42 E-value=11 Score=41.44 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=53.7
Q ss_pred chhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEec--------CCChHHHHHH--
Q 004808 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG--------GLSTKMQETA-- 242 (729)
Q Consensus 173 sGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~g--------g~~~~~~~~~-- 242 (729)
++|... ++-+|..++... ...++||.|+++..+..+++.+........+.+..++| +.+.......
T Consensus 370 ~~k~~~-l~~~l~~~~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHLK---PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp CHHHHH-HHHHHHHHHHHC---TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CHHHHH-HHHHHHHHhccC---CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 455543 344444443222 23469999999999999999998765444456666665 4443333222
Q ss_pred -Hh--cCCCeEEECchHHHHHHhccCccCCCCeeEEEE
Q 004808 243 -LR--SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (729)
Q Consensus 243 -l~--~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVv 277 (729)
+. +..+|+|||. .+.. ++++..+.+||.
T Consensus 446 ~F~~~g~~~vLvaT~-----~~~~--GlDlp~v~~VI~ 476 (555)
T 3tbk_A 446 AFRASGDNNILIATS-----VADE--GIDIAECNLVIL 476 (555)
T ss_dssp ------CCSEEEECC-----CTTC--CEETTSCSEEEE
T ss_pred HHhcCCCeeEEEEcc-----hhhc--CCccccCCEEEE
Confidence 22 3468999993 2222 677888888875
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.07 E-value=4.1 Score=38.70 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.++.+++.|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467789999999999986
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.88 E-value=4.2 Score=37.91 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
++.++++|++|||||.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457889999999999863
No 282
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=57.62 E-value=6.6 Score=41.41 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|++ ..|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 456678888754 6899999999874
No 283
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.01 E-value=34 Score=35.89 Aligned_cols=74 Identities=8% Similarity=0.123 Sum_probs=52.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cc-ccccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VA-ARGLDIIG 438 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~-~rGlDi~~ 438 (729)
.+.++||.++++..+..+...+.. .++.+..++|+...... +..+..+..+|+|+|. .+ ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 467899999999988877776654 46788888888765543 3455567889999995 22 23456677
Q ss_pred ccEEEEe
Q 004808 439 VQTVINY 445 (729)
Q Consensus 439 v~~VI~~ 445 (729)
+++||.=
T Consensus 184 ~~~vViD 190 (414)
T 3eiq_A 184 IKMFVLD 190 (414)
T ss_dssp CCEEEEC
T ss_pred CcEEEEE
Confidence 8887753
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=56.89 E-value=4.3 Score=37.49 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-++++|++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45588999999999985
No 285
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.67 E-value=17 Score=36.82 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=47.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
+.++||.++++..+..+++.+. .+..++|+.+.......+ .+..+|+|+|. .+.. ++++..
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~ 284 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASR--GLDIPL 284 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cccc--CCCccC
Confidence 3469999999998877655543 457788888766554433 24578999993 3333 678888
Q ss_pred eeEEEEe
Q 004808 272 LAVLILD 278 (729)
Q Consensus 272 i~~lVvD 278 (729)
+.+||.-
T Consensus 285 ~~~Vi~~ 291 (337)
T 2z0m_A 285 VEKVINF 291 (337)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 8888863
No 286
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=56.53 E-value=15 Score=36.84 Aligned_cols=42 Identities=26% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHH-HHHHhcCC-----CEEEEcCCCchhhHHh
Q 004808 135 PLLRACEALGYSKPTPIQAAC-IPLALTGR-----DICGSAITGSGKTAAF 179 (729)
Q Consensus 135 ~l~~~l~~~g~~~pt~iQ~~~-i~~ll~g~-----dvlv~a~TGsGKT~a~ 179 (729)
++.+-|.-.||. |++-.. +...+.++ .+++.||+|+|||+.+
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 677788777776 555333 44455543 4889999999999764
No 287
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=56.34 E-value=11 Score=43.05 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeE
Q 004808 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (729)
Q Consensus 195 ~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~ 274 (729)
...++||.+||+.-+.++++.+.. .++.+..++|+...... ...+.+|+|||. .+.. ++++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcE
Confidence 345799999999999988888775 37889999999876542 234568999994 3333 45554 776
Q ss_pred EE
Q 004808 275 LI 276 (729)
Q Consensus 275 lV 276 (729)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.30 E-value=3.3 Score=38.49 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=16.6
Q ss_pred hcCCCEEEEcCCCchhhHHh
Q 004808 160 LTGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a~ 179 (729)
..++.++++|++|||||.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 34678999999999999863
No 289
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.22 E-value=26 Score=35.84 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.1
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+-+++.+++|+|||+.
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 3466899999999975
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.05 E-value=4.5 Score=38.83 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|+-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 356678999999999975
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=56.04 E-value=4.1 Score=38.88 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.8
Q ss_pred HhcCCCEEEEcCCCchhhHH
Q 004808 159 ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a 178 (729)
+..|+-++++|++|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34577899999999999975
No 292
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=55.82 E-value=4.6 Score=41.72 Aligned_cols=22 Identities=32% Similarity=0.138 Sum_probs=15.7
Q ss_pred CEEEEcCCCchhhHHhhhhhhHH
Q 004808 164 DICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
-++++||||||||... ..+...
T Consensus 12 ~i~i~GptgsGKt~la-~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALA-IELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHHh
Confidence 3678999999999763 333333
No 293
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.63 E-value=4.6 Score=41.77 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-+++.||||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4678999999999763
No 294
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=55.61 E-value=24 Score=41.55 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=52.8
Q ss_pred ccCCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------c-----
Q 004808 367 KTFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A----- 431 (729)
Q Consensus 367 ~~~~~~vLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~----- 431 (729)
...+.+++|.|+|...+.+.+.++. ..|++++++.|+++..+|.... ..+|+++|+-- .
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 3446789999999998877766654 5699999999999987665544 36899999621 1
Q ss_pred --cccCCCCccEEEE
Q 004808 432 --RGLDIIGVQTVIN 444 (729)
Q Consensus 432 --rGlDi~~v~~VI~ 444 (729)
..+.+.++.++|.
T Consensus 223 ~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 223 SLDDLVQRGHHYAIV 237 (922)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred cHhhhccCCCCEEEE
Confidence 2356677887774
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.59 E-value=4.6 Score=40.28 Aligned_cols=15 Identities=33% Similarity=-0.008 Sum_probs=12.9
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
++++|+||||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 679999999999753
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.49 E-value=5.5 Score=41.01 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=19.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
|.-+.+.||+|||||.. +-+|..++
T Consensus 126 Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 66777999999999974 55565555
No 297
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=55.43 E-value=5 Score=41.96 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+-+++.||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45789999999999753
No 298
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=55.16 E-value=6.3 Score=38.59 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cc---cccCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA---RGLDII 437 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~~---rGlDi~ 437 (729)
+.++||.+|++..+..+...+... ++.+..++|+.....+ ......+..+|+|+|.- +. .++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999988887777654 6777777765422211 11223456789999942 21 257888
Q ss_pred CccEEEEeC
Q 004808 438 GVQTVINYA 446 (729)
Q Consensus 438 ~v~~VI~~d 446 (729)
.+.+||.=.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 899888543
No 299
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.98 E-value=8.1 Score=40.15 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhHHh
Q 004808 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dv--lv~a~TGsGKT~a~ 179 (729)
.+..++.|.++ +..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 45566788774 47899999999874
No 300
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=54.51 E-value=6.2 Score=39.85 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=25.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH--hcCCCEEEEcCCCchhhHH
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQA-ACIPLA--LTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~l--l~g~dvlv~a~TGsGKT~a 178 (729)
..+|.+++-...+.+.|...= ..|+.. .++..+ .-.+.+++.||+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 456888876666666554320 122221 111111 1124499999999999974
No 301
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.36 E-value=7.5 Score=41.72 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=20.5
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|++ ..|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 567788898755 6899999999874
No 302
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=54.09 E-value=23 Score=41.42 Aligned_cols=71 Identities=11% Similarity=-0.038 Sum_probs=51.7
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------cc-----
Q 004808 368 TFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------AR----- 432 (729)
Q Consensus 368 ~~~~~vLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~------~r----- 432 (729)
..+.+++|.|+|+..|.+....+. ..|+.+..+.|+++...|.... ..+|+|+|+-- ..
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 346689999999998887766554 4589999999999976554433 37899999621 12
Q ss_pred --ccCCCCccEEEE
Q 004808 433 --GLDIIGVQTVIN 444 (729)
Q Consensus 433 --GlDi~~v~~VI~ 444 (729)
.+...++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 255577888774
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.09 E-value=5.1 Score=42.53 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+++.||||||||+.
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999975
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.06 E-value=6 Score=36.24 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
+..+++.|++|||||+. .-+|..
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 56788999999999985 334444
No 305
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=53.78 E-value=8.3 Score=40.61 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
++..++.|.+++ ..|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 456677888754 6899999999874
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.52 E-value=5.2 Score=37.88 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+++.|++|||||+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999975
No 307
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=53.43 E-value=13 Score=41.18 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.+.++++.|.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 367899999999999976
No 308
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=53.31 E-value=8.9 Score=39.92 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 154 ACIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 154 ~~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
..+..++.|.|+. ..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3567778888754 6999999999874
No 309
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.01 E-value=8.2 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhHHh
Q 004808 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dv--lv~a~TGsGKT~a~ 179 (729)
.+..++.|.++ +..|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 44556778775 47899999999874
No 310
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=52.98 E-value=9 Score=40.49 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 445667887754 6899999999874
No 311
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.94 E-value=8 Score=41.57 Aligned_cols=26 Identities=46% Similarity=0.644 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 154 ACIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 154 ~~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
..+..++.|.+++ ..|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 3677788898754 6899999999874
No 312
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=52.82 E-value=8.5 Score=41.99 Aligned_cols=68 Identities=6% Similarity=0.036 Sum_probs=44.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
.++||.||++.-|..+++.+... ++.+..++|............+..+|+|||. .+.. ++++.. .+||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~~--GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC-----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHHh--CeecCC-CEEE
Confidence 46999999999999888888764 7788888886432222221234578999993 2233 566666 5554
No 313
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.80 E-value=4.6 Score=37.75 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+++.|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999985
No 314
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=52.69 E-value=9.1 Score=40.47 Aligned_cols=25 Identities=28% Similarity=0.592 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 455677887754 6899999999764
No 315
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=52.68 E-value=9.2 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 445567887754 6899999999874
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.45 E-value=6.4 Score=36.90 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=16.4
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
+-+++.||+|+|||+. +-+|..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4477999999999975 3444433
No 317
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=52.43 E-value=32 Score=40.58 Aligned_cols=57 Identities=18% Similarity=0.074 Sum_probs=44.4
Q ss_pred hccCCCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 004808 366 SKTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (729)
Q Consensus 366 ~~~~~~~vLIF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 428 (729)
....+.+++|.++|...+.+.+..+ ...|+++..+.|+++..+|..+. ..+|+++|+
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3345678999999998887766555 45699999999999987766654 378999995
No 318
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.39 E-value=9 Score=40.55 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445677887754 6899999999874
No 319
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.36 E-value=9 Score=40.34 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 455677887754 7899999999874
No 320
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.32 E-value=16 Score=35.24 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCEEEEcCCCchhhHHhhhhhhHH
Q 004808 134 RPLLRACEALGYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 134 ~~l~~~l~~~g~~~pt~iQ~~~i~~ll~g----~dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
..|.+.|.-.|+. +... ...+..++.+ +.+++.||+|+|||..+ ..+...
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 4566666655543 3333 3444555554 25889999999999753 444444
No 321
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=52.31 E-value=9 Score=40.29 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|+. ..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 456677888754 6899999999874
No 322
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=52.30 E-value=5.7 Score=36.53 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=12.7
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
++++|++|||||+.
T Consensus 5 I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 5 ILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEecCCCCCHHHH
Confidence 67999999999985
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.25 E-value=71 Score=32.35 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-+++.+++|+|||...
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4568899999999753
No 324
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=52.21 E-value=9.2 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 455677887744 6899999999874
No 325
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=52.07 E-value=8.5 Score=44.19 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=42.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEec--------CCChHHHHHH---Hh--cCCCeEEECchHHHHHHh
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG--------GLSTKMQETA---LR--SMPDIVVATPGRMIDHLR 262 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~g--------g~~~~~~~~~---l~--~~~dIvI~TP~~L~~~l~ 262 (729)
+.++||.|+++..+..+++.+.....+..+++..++| +.+...+... +. +...|+|||. .+.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~~ 472 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VAD 472 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SSC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hhh
Confidence 3469999999999999999988754444477777765 5554433332 22 4578999993 222
Q ss_pred ccCccCCCCeeEEEEe
Q 004808 263 NSMSVDLDDLAVLILD 278 (729)
Q Consensus 263 ~~~~~~l~~i~~lVvD 278 (729)
.++++..+.+||.=
T Consensus 473 --~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 473 --EGIDIAQCNLVILY 486 (696)
T ss_dssp --CC---CCCSEEEEE
T ss_pred --cCCcCccCCEEEEe
Confidence 36788888888853
No 326
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.06 E-value=7.9 Score=39.68 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
....+++.|++|+|||.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999975
No 327
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=52.00 E-value=5.4 Score=41.77 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999975
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=51.99 E-value=5.8 Score=38.06 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.2
Q ss_pred hcCCCEEEEcCCCchhhHH
Q 004808 160 LTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a 178 (729)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3577788999999999975
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=51.85 E-value=5.9 Score=36.86 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-+++.|++|||||++
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999985
No 330
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.76 E-value=17 Score=48.88 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhcCCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 132 LSRPLLRACEALGYSKPTPIQ-AACI---PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ-~~~i---~~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
|...+...+..+|+. |++.+ ..++ ..+...+.+++.||||||||.++ .+|...+..-.+ ....+.+|-|-.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~--~~L~~al~~l~~-~~~~~~~iNPKa 947 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW--EVYLEAIEQVDN-IKSEAHVMDPKA 947 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH--HHHHHHHTTTTT-CEEEEEEECTTT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH--HHHHHHHHHhhC-CCceEEEECCCC
Confidence 456677888889986 55544 3343 33444567889999999999874 455555443221 223455667754
No 331
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=51.68 E-value=9.4 Score=40.17 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 345567887744 6899999999874
No 332
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=51.45 E-value=5.3 Score=38.45 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|+-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56688999999999965
No 333
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=51.43 E-value=6.1 Score=37.32 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.|.-+.+.||+|||||+. +-+|..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 466677999999999975 3344443
No 334
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=51.02 E-value=10 Score=39.77 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|+. ..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 455667887754 6899999999874
No 335
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=50.98 E-value=7.9 Score=40.98 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=19.9
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 567778888754 6899999999874
No 336
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=50.82 E-value=8.8 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 455677887744 6899999999874
No 337
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.75 E-value=6.5 Score=42.45 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=29.7
Q ss_pred ccCCcccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEA---LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~---~g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|++++=-..+.+.|.. +.+..|--++...++ ..+.+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 45678888643444444332 112223222222211 236799999999999975
No 338
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=50.74 E-value=5.8 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35699999999999975
No 339
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=50.60 E-value=7.3 Score=36.96 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999975
No 340
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=50.59 E-value=9.1 Score=41.05 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=19.0
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhHHh
Q 004808 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dv--lv~a~TGsGKT~a~ 179 (729)
.+..++.|.++ +..|+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 44566788764 46899999999874
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=50.50 E-value=6.3 Score=35.91 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+++.|+.|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999985
No 342
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=50.49 E-value=33 Score=39.59 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=50.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhc-----------------------------cCceEEEEecCCChHHHHHHH----
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQF-----------------------------TDIRCCLVVGGLSTKMQETAL---- 243 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~-----------------------------~~i~v~~~~gg~~~~~~~~~l---- 243 (729)
.++||.||++.-|..++..+...... ....+..++|+.+...+....
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 45999999999999888887754221 112488899998877665433
Q ss_pred hcCCCeEEECchHHHHHHhccCccCCCCeeEEE
Q 004808 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (729)
Q Consensus 244 ~~~~dIvI~TP~~L~~~l~~~~~~~l~~i~~lV 276 (729)
.+...|||||. .+.. ++++..+.+||
T Consensus 318 ~g~~~vlvaT~-----~l~~--Gvdip~~~~VI 343 (720)
T 2zj8_A 318 KGIIKAVVATP-----TLSA--GINTPAFRVII 343 (720)
T ss_dssp TTSSCEEEECS-----TTGG--GCCCCBSEEEE
T ss_pred CCCCeEEEECc-----Hhhc--cCCCCceEEEE
Confidence 24578999993 2222 67777777644
No 343
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=50.44 E-value=9.4 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=19.0
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 445567787744 6899999999874
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=50.44 E-value=6.4 Score=36.83 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+..+++.|++|||||.+
T Consensus 10 ~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 10 GINILITGTPGTGKTSM 26 (184)
T ss_dssp SCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56789999999999986
No 345
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=50.43 E-value=8.1 Score=47.58 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=24.2
Q ss_pred CeEEEEeCcHH-HHHHHHHHHhhcCCceeeccC
Q 004808 371 SKVIIFSGTKQ-AAHRLKILFGLAALKAAELHG 402 (729)
Q Consensus 371 ~~vLIF~~s~~-~~~~l~~~L~~~~~~~~~lhg 402 (729)
.-+.|.|++.. .+..+...|...|+++....+
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 45888888874 677888888888888776544
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=49.74 E-value=6.3 Score=41.56 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.+.-+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345678999999999975
No 347
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=49.36 E-value=7.9 Score=37.48 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=19.2
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.|.-+.+.||+|+|||.. +-+|..++
T Consensus 22 ~G~~~~lvGpsGsGKSTL--l~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL--IKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 577788999999999974 44444443
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.31 E-value=9.1 Score=39.98 Aligned_cols=50 Identities=10% Similarity=-0.062 Sum_probs=27.9
Q ss_pred HHHHHhc-----CCCEEEEcCCCchhhHHhhhhhhHHHhc-CCCCCCCcEEEEEcCc
Q 004808 155 CIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLY-RPKRIPAIRVLILTPT 205 (729)
Q Consensus 155 ~i~~ll~-----g~dvlv~a~TGsGKT~a~~lpil~~l~~-~~~~~~~~~vLIl~Pt 205 (729)
.+..++. |.-+++.|++|+|||... +.+...... ...+..+..++++.-.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECC
Confidence 3566664 345779999999999753 333333211 1101123457777654
No 349
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.23 E-value=8.4 Score=38.39 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.9
Q ss_pred HHhcCCCEEEEcCCCchhhHH
Q 004808 158 LALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 158 ~ll~g~dvlv~a~TGsGKT~a 178 (729)
..+.|..+++.|++|||||++
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHH
Confidence 344589999999999999986
No 350
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=49.13 E-value=22 Score=40.88 Aligned_cols=74 Identities=24% Similarity=0.247 Sum_probs=51.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhc--------------------------cCceEEEEecCCChHHHHHHH----hcC
Q 004808 197 IRVLILTPTRELAVQVHSMIEKIAQF--------------------------TDIRCCLVVGGLSTKMQETAL----RSM 246 (729)
Q Consensus 197 ~~vLIl~PtreLa~Q~~~~~~~l~~~--------------------------~~i~v~~~~gg~~~~~~~~~l----~~~ 246 (729)
.++||.||++.-+..++..+...... .+..+..++|+.+...+.... .+.
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 35999999999998888887754211 113467889998876655433 245
Q ss_pred CCeEEECchHHHHHHhccCccCCCCeeEEEE
Q 004808 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (729)
Q Consensus 247 ~dIvI~TP~~L~~~l~~~~~~~l~~i~~lVv 277 (729)
..|||||. .+.. ++++..+.+||-
T Consensus 323 ~~vlvaT~-----~l~~--Gidip~~~~VI~ 346 (702)
T 2p6r_A 323 IKVVVATP-----TLAA--GVNLPARRVIVR 346 (702)
T ss_dssp CCEEEECS-----TTTS--SSCCCBSEEEEC
T ss_pred CeEEEECc-----HHhc--cCCCCceEEEEc
Confidence 79999994 2232 677888877654
No 351
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=49.00 E-value=8.7 Score=40.91 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=18.4
Q ss_pred HHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 156 IPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 156 i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
+..++.|.++. ..|+||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567787754 6899999999874
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=48.94 E-value=12 Score=38.55 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=18.5
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
|.-+.+.||+|+|||+. +.++..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 44566899999999984 445555554
No 353
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.55 E-value=11 Score=40.81 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.1
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|+. ..|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445567887744 6899999999874
No 354
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=48.50 E-value=8.3 Score=40.48 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=20.1
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|++ ..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 566778888754 6899999999874
No 355
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=48.49 E-value=17 Score=40.77 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcH
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Ptr 206 (729)
..+++|.|.||||||.+. -.++..++.... ....+++++=|-.
T Consensus 214 ~pHlLIaG~TGSGKS~~L-~tlI~sLl~~~s-P~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV-NAMLLSILFKST-PSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHH-HHHHHHHHTTCC-TTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHH-HHHHHHHHHhCC-CcceEEEEeCCCh
Confidence 468999999999999763 444444443211 1234566666653
No 356
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=48.42 E-value=29 Score=40.58 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=46.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----ccc-cc-CCCC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR-GL-DIIG 438 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~-----~~r-Gl-Di~~ 438 (729)
+.++||.||++..+......|.. .++.+..+||+.+...+...+. +..+|+|+|.- +.. .+ .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999888776555543 4899999999987665433322 25789999852 122 23 5667
Q ss_pred ccEEEEe
Q 004808 439 VQTVINY 445 (729)
Q Consensus 439 v~~VI~~ 445 (729)
+++||.=
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 8888853
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.75 E-value=9 Score=36.54 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=19.2
Q ss_pred HHhcCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 158 LALTGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 158 ~ll~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.+-.|.-+.+.||+|||||.. +-++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 455677788999999999974 44444443
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=47.71 E-value=5.5 Score=37.03 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|.-+++.|++|||||++.
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999863
No 359
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=47.66 E-value=7.7 Score=40.26 Aligned_cols=16 Identities=31% Similarity=0.160 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 360
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=47.58 E-value=7.5 Score=36.88 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+++.|++|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 366788999999999985
No 361
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=47.58 E-value=11 Score=40.14 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhHHh
Q 004808 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dv--lv~a~TGsGKT~a~ 179 (729)
.+..++.|.++ +..|+||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 45567788764 46899999999874
No 362
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=47.53 E-value=9 Score=36.60 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=17.2
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
|.-+.+.||+|||||+. +-+|..++
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 44566999999999974 34444443
No 363
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=47.50 E-value=6.9 Score=39.84 Aligned_cols=16 Identities=19% Similarity=-0.025 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999975
No 364
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=47.21 E-value=6.7 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|.=+++.||+|||||+.+
T Consensus 9 gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445679999999999754
No 365
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.08 E-value=7.4 Score=40.67 Aligned_cols=16 Identities=38% Similarity=0.125 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4679999999999753
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.95 E-value=8.9 Score=41.07 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=15.2
Q ss_pred EEEEcCCCchhhHHhhhhhhHH
Q 004808 165 ICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~ 186 (729)
++++||||||||... ..+...
T Consensus 5 i~i~GptgsGKttla-~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS-IQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHHH-HHHHHH
T ss_pred EEEECcchhhHHHHH-HHHHHH
Confidence 678999999999753 334333
No 367
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=46.89 E-value=8.3 Score=40.68 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
...+++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999975
No 368
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.61 E-value=7.2 Score=42.29 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
+..+|++++--....+.|... .+..|.-++...+ -..+.+|+.||+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 456788887544544444321 1111111111111 1137899999999999985
No 369
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=46.60 E-value=8.2 Score=40.51 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=19.5
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.|+. ..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 556667887754 6899999999874
No 370
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=46.54 E-value=8.1 Score=37.59 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.7
Q ss_pred HhcCCCEEEEcCCCchhhHH
Q 004808 159 ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a 178 (729)
+-.|.-+++.||+|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44577788999999999984
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.24 E-value=12 Score=34.62 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=16.0
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 164 DICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
-.++.|++|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 356899999999975 34444443
No 372
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=46.04 E-value=11 Score=39.67 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=15.5
Q ss_pred cCCC--EEEEcCCCchhhHHh
Q 004808 161 TGRD--ICGSAITGSGKTAAF 179 (729)
Q Consensus 161 ~g~d--vlv~a~TGsGKT~a~ 179 (729)
.|.+ ++..|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 468999999999874
No 373
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=45.87 E-value=10 Score=36.21 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhHH
Q 004808 148 PTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 148 pt~iQ~~~i~~ll~g~dvlv~a~TGsGKT~a 178 (729)
.++.+... ..+..|.-+++.|++|||||..
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34555554 3344567788999999999975
No 374
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=45.85 E-value=62 Score=35.68 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=24.3
Q ss_pred CCCeeEEEEeCcchhhcCC-----hHHHHHHHHHhcCcCceEEEEe
Q 004808 269 LDDLAVLILDEADRLLELG-----FSAEIHELVRLCPKRRQTMLFS 309 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~g-----f~~~i~~il~~~~~~~q~il~S 309 (729)
....++|||| -=.-++.. ....+..++..+...--+++++
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3566799999 66666666 6666666666554333344443
No 375
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=45.75 E-value=8.2 Score=36.52 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
.-++++|++|||||++
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999985
No 376
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.67 E-value=11 Score=35.35 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=12.8
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
.+.+.||+|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.63 E-value=7.3 Score=35.85 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|.-+++.|++|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999985
No 378
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.63 E-value=23 Score=42.46 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=42.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEE--------ecCCChHHHHHH---Hh--cCCCeEEECchHHHHHHh
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV--------VGGLSTKMQETA---LR--SMPDIVVATPGRMIDHLR 262 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~--------~gg~~~~~~~~~---l~--~~~dIvI~TP~~L~~~l~ 262 (729)
+.++||.++++..+..+.+.+.......++++..+ +|+.+...+... +. +..+|+|+|- .+.
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~~ 705 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 705 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----chh
Confidence 45799999999999999999887533334444444 444544433322 22 3468999993 233
Q ss_pred ccCccCCCCeeEEEEeCc
Q 004808 263 NSMSVDLDDLAVLILDEA 280 (729)
Q Consensus 263 ~~~~~~l~~i~~lVvDEa 280 (729)
. ++++..+.+||.=..
T Consensus 706 e--GIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 706 E--GIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred c--CCcchhCCEEEEeCC
Confidence 3 678888988886443
No 379
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=45.45 E-value=11 Score=39.01 Aligned_cols=17 Identities=24% Similarity=0.179 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999975
No 380
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=45.43 E-value=8.5 Score=35.92 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+++.|++|+|||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 367899999999985
No 381
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=45.26 E-value=19 Score=39.24 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=17.0
Q ss_pred hcCCCEEEEcCCCchhhHHh
Q 004808 160 LTGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 160 l~g~dvlv~a~TGsGKT~a~ 179 (729)
..|+-+++.|+.|+|||...
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHH
T ss_pred ccCCEEEEECCCCCCccHHH
Confidence 45888999999999999753
No 382
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.13 E-value=8 Score=42.14 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
++.+|+.||+|+|||...
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 368999999999999763
No 383
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.10 E-value=8.4 Score=35.87 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-++++|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999985
No 384
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=44.58 E-value=8.6 Score=37.89 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+.+++.||+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4489999999999975
No 385
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=44.47 E-value=10 Score=40.20 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=19.5
Q ss_pred HHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 155 CIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 155 ~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
.+..++.|.++. ..|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 556677887754 6899999999874
No 386
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=44.41 E-value=10 Score=38.50 Aligned_cols=16 Identities=31% Similarity=0.185 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
..+++.||+|+|||.+
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999975
No 387
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=44.41 E-value=1.4e+02 Score=31.38 Aligned_cols=92 Identities=9% Similarity=0.067 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCc-hhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEe
Q 004808 153 AACIPLALTGRDICGSAITGS-GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (729)
Q Consensus 153 ~~~i~~ll~g~dvlv~a~TGs-GKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~ 231 (729)
...+...+.++.++|.|.||+ |..++- .|.... ...++++.-...-..++...+.....+.+..+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~~------~L~~~g----~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~ 95 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVTK------EIFKRN----PQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFA 95 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHHH------HHHTTC----CSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHHH------HHHHCC----CCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEE
Confidence 344566778999999999986 766543 222221 124666665554445555555543333346677778
Q ss_pred cCCChHHHHHHHh--cCCCeEEECc
Q 004808 232 GGLSTKMQETALR--SMPDIVVATP 254 (729)
Q Consensus 232 gg~~~~~~~~~l~--~~~dIvI~TP 254 (729)
++.........+. .++|+||-..
T Consensus 96 ~Dl~d~~~~~~~~~~~~~D~Vih~A 120 (399)
T 3nzo_A 96 LDIGSIEYDAFIKADGQYDYVLNLS 120 (399)
T ss_dssp CCTTSHHHHHHHHHCCCCSEEEECC
T ss_pred EeCCCHHHHHHHHHhCCCCEEEECC
Confidence 8776654433333 5688887653
No 388
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=44.38 E-value=11 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.007 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|.-+.+.||+|+|||+.
T Consensus 25 G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SEEEEEEESTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45577999999999975
No 389
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=44.37 E-value=4.7 Score=44.08 Aligned_cols=70 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHH----hcCCCeEEECchHHHHHHhccCccCCCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l----~~~~dIvI~TP~~L~~~l~~~~~~~l~~ 271 (729)
..++||.||++.-|..+++.+... ++.+..++|+.+.......+ .+..+|+|||. .+.. ++++..
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~--GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cccc--CCcccc
Confidence 457999999999988888877753 67788889987765443332 23478999993 2333 567777
Q ss_pred eeEEE
Q 004808 272 LAVLI 276 (729)
Q Consensus 272 i~~lV 276 (729)
+.+||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 77775
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=43.92 E-value=13 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=15.5
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.++.||+|+|||.. +-++..++
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 56899999999975 33444333
No 391
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=43.73 E-value=5.6 Score=39.56 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999753
No 392
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=43.57 E-value=9.4 Score=35.48 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
.-+++.|++|||||++.
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999863
No 393
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.51 E-value=9.9 Score=35.48 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.+.-+++.|++|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999985
No 394
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=43.29 E-value=8.8 Score=39.00 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-++++|++|||||+.
T Consensus 35 livl~G~sGsGKSTl 49 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEECCTTSCTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999975
No 395
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=43.23 E-value=9.1 Score=40.17 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+.+++.||+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 396
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=43.00 E-value=15 Score=34.65 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCCeEEEEeCcHHHHHH-HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-----cc-------
Q 004808 369 FTSKVIIFSGTKQAAHR-LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----AR------- 432 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~-l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~-----~r------- 432 (729)
.+.++||+|++...+.. +...+.. .++.+..++|+.....+...+. +..+|+|+|.-. ..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 156 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 156 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCccccc
Confidence 35789999999988776 5444433 3678888998765332221111 246788888532 11
Q ss_pred ccCCCCccEEEE
Q 004808 433 GLDIIGVQTVIN 444 (729)
Q Consensus 433 GlDi~~v~~VI~ 444 (729)
++.+.++++||.
T Consensus 157 ~~~~~~~~~iIi 168 (216)
T 3b6e_A 157 GVQLSDFSLIII 168 (216)
T ss_dssp CCCGGGCSEEEE
T ss_pred ccchhcccEEEE
Confidence 245566666664
No 397
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=43.00 E-value=9.3 Score=35.43 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.7
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|+.|||||+.
T Consensus 4 I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 4 GIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEECTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999985
No 398
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=42.51 E-value=14 Score=34.87 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCCeeEEEEeCcchhh--cCChHHHHHHHHHhcCcCceEEEEeccc
Q 004808 269 LDDLAVLILDEADRLL--ELGFSAEIHELVRLCPKRRQTMLFSATL 312 (729)
Q Consensus 269 l~~i~~lVvDEah~ll--~~gf~~~i~~il~~~~~~~q~il~SATl 312 (729)
+...++||+||+..+- +..|...+..++.. ...+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4667899999988773 44466666666653 22244446665
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=42.24 E-value=12 Score=38.29 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
|.-+.+.||+|+|||+. +..+..++.
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 44566999999999985 444544443
No 400
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.08 E-value=21 Score=47.57 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhcCCCEEEEcCCCchhhHHh
Q 004808 132 LSRPLLRACEALGYSKPTPIQ-AACI---PLALTGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 132 l~~~l~~~l~~~g~~~pt~iQ-~~~i---~~ll~g~dvlv~a~TGsGKT~a~ 179 (729)
+...+...+...|+. +++.+ ..++ ..+...+.+++.||||||||.++
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 445677788888886 55555 3333 33445678999999999999864
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.74 E-value=10 Score=34.57 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+++++.|+.|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57889999999999863
No 402
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=41.73 E-value=9.9 Score=40.13 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
-.++.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4669999999999764
No 403
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=41.73 E-value=21 Score=36.41 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
++-+++.|++|+|||+..
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456779999999999753
No 404
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=41.64 E-value=13 Score=35.33 Aligned_cols=23 Identities=35% Similarity=0.176 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHH
Q 004808 163 RDICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
.-+.+.|++|||||+. +-+|..+
T Consensus 7 ~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHH--HHHHHHH
T ss_pred EEEEEECCCCCCHHHH--HHHHHHH
Confidence 3466899999999975 3444443
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.46 E-value=12 Score=34.51 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
.+++.|++|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999753
No 406
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=40.98 E-value=18 Score=30.59 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 405 (729)
...+++|||.+-..+......|...|+++..|.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999988888999999999999999999864
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=40.98 E-value=11 Score=35.54 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+++.|+.|||||++
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999986
No 408
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.88 E-value=13 Score=35.56 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=13.0
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
.++.|+.|||||+..
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 579999999999864
No 409
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.75 E-value=11 Score=35.97 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.2
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
+++.|++|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999863
No 410
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=40.69 E-value=11 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-+++.|++|||||++
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688999999999985
No 411
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.67 E-value=11 Score=34.96 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.2
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+++.|++|||||++
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999985
No 412
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=40.59 E-value=9.9 Score=35.99 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+++.|++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356677999999999975
No 413
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=40.51 E-value=24 Score=32.76 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=15.5
Q ss_pred EEEEcCCCchhhHHhhhhhhHHH
Q 004808 165 ICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l 187 (729)
+.+.|+.|||||.. +..++..+
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhh
Confidence 56899999999975 34444444
No 414
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=40.50 E-value=18 Score=29.92 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=32.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 405 (729)
...+++|||.+-..+......|...|+++..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999999988889999999999999888888764
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.43 E-value=9.2 Score=37.13 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=10.9
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+.+.||+|||||+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356677999999999975
No 416
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.43 E-value=11 Score=35.27 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-++++|++|||||++
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45688999999999985
No 417
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.37 E-value=34 Score=41.67 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=49.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cccccc-CCCCccEE
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARGL-DIIGVQTV 442 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----~~~rGl-Di~~v~~V 442 (729)
.+.++||.+|++..+......|......++.++|+++ .++..+|||+|. .+.++- .+..+.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3678999999999999998888876668999999886 346788999993 344433 35667777
Q ss_pred EE
Q 004808 443 IN 444 (729)
Q Consensus 443 I~ 444 (729)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 418
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=40.10 E-value=3e+02 Score=27.62 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=90.7
Q ss_pred cEEEEEcCcH---HHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH----Hh--cCCCeEEECch--HHHHHHhccC
Q 004808 197 IRVLILTPTR---ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LR--SMPDIVVATPG--RMIDHLRNSM 265 (729)
Q Consensus 197 ~~vLIl~Ptr---eLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~----l~--~~~dIvI~TP~--~L~~~l~~~~ 265 (729)
+++.||+|.. .-..++..-+...+...++.+.++....+...+... +. .++|-||.+|. .....+..
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~-- 81 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL-- 81 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH--
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH--
Confidence 4678888864 334556666666666668888777666555443322 33 37776665552 22222221
Q ss_pred ccCCCCeeEEEEeCcchhh-------------------cCCh----HHHHHHHHHhc---Cc-C-ceEEEEecccchhHH
Q 004808 266 SVDLDDLAVLILDEADRLL-------------------ELGF----SAEIHELVRLC---PK-R-RQTMLFSATLTEDVD 317 (729)
Q Consensus 266 ~~~l~~i~~lVvDEah~ll-------------------~~gf----~~~i~~il~~~---~~-~-~q~il~SATl~~~v~ 317 (729)
+.-..+-+|++|-...-. .... ......++... +. . +++++++........
T Consensus 82 -~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~ 160 (350)
T 3h75_A 82 -SQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAA 160 (350)
T ss_dssp -HTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHH
T ss_pred -HHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHH
Confidence 112345566666432110 0111 12233444444 11 2 678888776542221
Q ss_pred HH-HH---HhcC-CCeEEecCCCCCCCCCceeEEEEeehhhhhhHHHHHHHHhhccCCCeEEEEeCcHHHHHHHHHHHhh
Q 004808 318 EL-IK---LSLT-KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (729)
Q Consensus 318 ~l-~~---~~l~-~p~~i~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~ 392 (729)
.. .. ..+. .+. +....+.........-...+..++... +....|||.+-..+.-+...|..
T Consensus 161 ~~R~~Gf~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~aI~~~~d~~a~g~~~al~~ 226 (350)
T 3h75_A 161 QLRERGLRRALAEHPQ-------------VHLRQLVYGEWNRERAYRQAQQLLKRY-PKTQLVWSANDEMALGAMQAARE 226 (350)
T ss_dssp HHHHHHHHHHHHHCTT-------------EEEEEEEECTTCHHHHHHHHHHHHHHC-TTEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-------------eEEEEEeeCCCcHHHHHHHHHHHHHhC-CCcCEEEECChHHHHHHHHHHHH
Confidence 11 11 1111 111 111111111111222233445555443 45788999999999888889988
Q ss_pred cCCc
Q 004808 393 AALK 396 (729)
Q Consensus 393 ~~~~ 396 (729)
.|+.
T Consensus 227 ~G~~ 230 (350)
T 3h75_A 227 LGRK 230 (350)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8765
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.85 E-value=16 Score=37.56 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.4
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57899999999975
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=39.70 E-value=23 Score=35.62 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHh
Q 004808 161 TGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~ 179 (729)
.|.-+++.|++|+|||+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 3566779999999999753
No 421
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=39.64 E-value=7.9 Score=36.60 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
.-+++.|++|||||++
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999986
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=39.63 E-value=13 Score=38.47 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5789999999999975
No 423
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=39.58 E-value=14 Score=34.21 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
.-++++|++|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999853
No 424
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=39.57 E-value=12 Score=34.10 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
+-+++.|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999985
No 425
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.47 E-value=11 Score=37.65 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=27.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHh--cCCCEEEEcCCCchhhHH
Q 004808 124 ANSFMELNLSRPLLRACEALGYSKPTPIQ-AACIPLAL--TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~ll--~g~dvlv~a~TGsGKT~a 178 (729)
..+|+++.....+...+..+-.. +. ...+..+- -.+.+++.||+|+|||..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 44577776666665555442110 10 11111110 123489999999999975
No 426
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.46 E-value=15 Score=40.07 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
..++|+.||+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 46899999999999985
No 427
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=39.45 E-value=9.9 Score=35.91 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-+++.|+.|||||++
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45578999999999985
No 428
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=39.33 E-value=80 Score=31.43 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHH---HhcC
Q 004808 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LRSM 246 (729)
Q Consensus 170 ~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~---l~~~ 246 (729)
...+||..+ ++-++..+... +.++||.+.++..+..+...+... .++.+..++|+.+....... +..+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNN 162 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred cccCHHHHH-HHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCC
Confidence 356788765 45566655432 236999999999888877777652 26778889999876554433 3333
Q ss_pred --CC-eEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 004808 247 --PD-IVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (729)
Q Consensus 247 --~d-IvI~TP~~L~~~l~~~~~~~l~~i~~lVvDE 279 (729)
.. ++++|- . . +.++++.....||+=+
T Consensus 163 ~~~~v~L~st~-~----~--g~Glnl~~a~~VI~~d 191 (271)
T 1z5z_A 163 PSVKFIVLSVK-A----G--GFGINLTSANRVIHFD 191 (271)
T ss_dssp TTCCEEEEECC-T----T--CCCCCCTTCSEEEECS
T ss_pred CCCCEEEEehh-h----h--cCCcCcccCCEEEEEC
Confidence 45 455552 1 1 2367777777776533
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.10 E-value=12 Score=35.71 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=13.2
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
+++.|++|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999863
No 430
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=38.94 E-value=23 Score=34.62 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=17.8
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
++++.++.|+|||.+. +.+...+..
T Consensus 8 ~I~~~~kgGvGKTt~a-~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM-LQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 5889999999999874 444444443
No 431
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.93 E-value=12 Score=35.05 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=12.7
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|++|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67999999999985
No 432
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=38.92 E-value=76 Score=35.37 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=49.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhc----cCceEEEEecCCCh--HHHHHHHhcC-CC---eEEECchHHHHHHhccC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQF----TDIRCCLVVGGLST--KMQETALRSM-PD---IVVATPGRMIDHLRNSM 265 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~----~~i~v~~~~gg~~~--~~~~~~l~~~-~d---IvI~TP~~L~~~l~~~~ 265 (729)
..++||+|+++.-|..+++.+..+... .+..+..++|.... ......+..+ .+ |+|||. .+..
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~-- 511 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTT-- 511 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTT--
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhc--
Confidence 458999999999999999988775321 12235666776543 1112223332 22 667762 2222
Q ss_pred ccCCCCeeEEEEeCc
Q 004808 266 SVDLDDLAVLILDEA 280 (729)
Q Consensus 266 ~~~l~~i~~lVvDEa 280 (729)
++++..+.+||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 788899999998665
No 433
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=38.89 E-value=12 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+..+++.|++|||||++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999863
No 434
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=38.85 E-value=13 Score=35.66 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+..+++.|++|||||++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999863
No 435
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=38.80 E-value=13 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
|.-+++.|++|+|||...
T Consensus 20 G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 455779999999999754
No 436
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=38.66 E-value=12 Score=35.16 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=13.2
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-++++|++|||||++
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999985
No 437
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=38.65 E-value=1.5e+02 Score=34.58 Aligned_cols=114 Identities=11% Similarity=0.182 Sum_probs=65.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHhhccCceEEEEecCCChHHHHHHHhc----CCC--eEEECchHHHHHHhccCccCC
Q 004808 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS----MPD--IVVATPGRMIDHLRNSMSVDL 269 (729)
Q Consensus 196 ~~~vLIl~PtreLa~Q~~~~~~~l~~~~~i~v~~~~gg~~~~~~~~~l~~----~~d--IvI~TP~~L~~~l~~~~~~~l 269 (729)
+.++||.+..+..+.-+...+.. .++.+..+.|+.+.......+.. ... |++.|...+ . .+++|
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag----g--~GlNL 641 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSI----KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG----G--LGINL 641 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHH----HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH----T--TTCCC
T ss_pred CCeEEEEechHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc----c--CCCCc
Confidence 34699999999887666666654 47888999999887766655432 122 444443222 2 36788
Q ss_pred CCeeEEEEeCcchhhcCChHHHHHHHHHhcC----cCceE--EEEecccchhHHHHHHHh
Q 004808 270 DDLAVLILDEADRLLELGFSAEIHELVRLCP----KRRQT--MLFSATLTEDVDELIKLS 323 (729)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~il~~~~----~~~q~--il~SATl~~~v~~l~~~~ 323 (729)
.....||+=+. .|.....++.+-+... +...+ ++...|+-..+...+...
T Consensus 642 ~~a~~VI~~D~----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 642 MTADTVVIFDS----DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp TTCCEEEESSC----CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccceEEEecC----CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 88877776433 3555555555544332 11222 344456555555554433
No 438
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.16 E-value=24 Score=36.90 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=23.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
|.-+++.|++|+|||... +.++..+... +.+++++.-
T Consensus 61 G~iv~I~G~pGsGKTtLa-l~la~~~~~~-----g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVA-LHAVANAQAA-----GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHHT-----TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHhC-----CCeEEEEEC
Confidence 456789999999999763 4444444332 223666653
No 439
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=38.02 E-value=25 Score=36.92 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=24.0
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcC
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~P 204 (729)
|.-+++.|++|+|||... +.++..+.... .+|+++..
T Consensus 63 G~ii~I~G~pGsGKTtLa-l~la~~~~~~g-----~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLT-LQVIAAAQREG-----KTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHTT-----CCEEEEES
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHCC-----CeEEEEeC
Confidence 566889999999999764 44444443322 23666665
No 440
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=37.92 E-value=23 Score=37.32 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=24.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCc
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~Pt 205 (729)
|.-+++.|++|+|||.. ++.++..+.... ..|+++..-
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~g-----~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKAG-----GTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHTT-----CCEEEEESS
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHCC-----CeEEEEECC
Confidence 45677999999999965 455555544322 236666543
No 441
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=37.91 E-value=12 Score=42.20 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 442
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=37.88 E-value=1.1e+02 Score=25.74 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=69.5
Q ss_pred EEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc-------CCCCccEEEEe
Q 004808 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL-------DIIGVQTVINY 445 (729)
Q Consensus 373 vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd~~~rGl-------Di~~v~~VI~~ 445 (729)
.+||...-.....+...+...|+.+..|+++.....|.+.++.|....+++--..+--.-.- -.|.++.|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46788888888888888888999999999999999999999999877666554433211000 13666766655
Q ss_pred CCCC--ChhhHHHHhcccccCCCccEEEEEeccCcHHHHHHHHHHh
Q 004808 446 ACPR--DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (729)
Q Consensus 446 d~P~--s~~~yiQriGRagR~G~~G~~i~l~~~~d~~~l~~i~~~~ 489 (729)
.... -+..|+...-- | | -.++++++..+...-+.....+
T Consensus 85 ttddkewikdfieeake--r-g--vevfvvynnkdddrrkeaqqef 125 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKE--R-G--VEVFVVYNNKDDDRRKEAQQEF 125 (162)
T ss_dssp ECCCHHHHHHHHHHHHH--T-T--CEEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHh--c-C--cEEEEEecCCCchhHHHHHHHh
Confidence 3221 23344433211 1 2 2455566666555555544444
No 443
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=37.76 E-value=2.8e+02 Score=28.49 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHh
Q 004808 164 DICGSAITGSGKTAAF 179 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~ 179 (729)
.++++|++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 444
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=37.50 E-value=12 Score=34.58 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|.-+++.|++|||||++
T Consensus 5 g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 55678999999999985
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=37.46 E-value=13 Score=36.15 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+..+++.|++|||||.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999863
No 446
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=37.38 E-value=15 Score=38.61 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=17.4
Q ss_pred CCEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 163 RDICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
.-+.+.|++|+|||+. +..|..++.
T Consensus 158 ~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred eEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 3466999999999985 444544443
No 447
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.35 E-value=13 Score=35.07 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367999999999985
No 448
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=37.28 E-value=25 Score=28.60 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.5
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 004808 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (729)
Q Consensus 371 ~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 405 (729)
.+++|||.+-..+......|...|+.+..|.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888899999999999778888764
No 449
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.24 E-value=14 Score=33.57 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=12.7
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|++|||||.+
T Consensus 3 I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 3 IYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEESCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999985
No 450
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=37.21 E-value=13 Score=36.92 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
.-++++|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3478999999999985
No 451
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.19 E-value=13 Score=35.58 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.5
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
.-+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467999999999985
No 452
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=37.11 E-value=16 Score=38.45 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhcCC
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLYRP 191 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~~~ 191 (729)
.++.|+||+|||. ++=++..++...
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l~g~ 52 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFALFGA 52 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHHHCC
T ss_pred EEEECCCCCCHHH--HHHHHHHHHcCC
No 453
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=36.95 E-value=12 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|.-+++.|++|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999985
No 454
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=36.92 E-value=11 Score=34.60 Aligned_cols=18 Identities=28% Similarity=0.117 Sum_probs=10.9
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+.-+++.|+.|||||.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455789999999999863
No 455
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=36.75 E-value=14 Score=36.32 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-+++.|++|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45678999999999975
No 456
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=36.64 E-value=17 Score=30.16 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 405 (729)
...+++|||.+-..+......|...|+++..|.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999988888899999999999888988764
No 457
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.47 E-value=14 Score=34.94 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=12.4
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+.+.|++|||||++
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999985
No 458
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.29 E-value=14 Score=34.29 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999985
No 459
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.14 E-value=14 Score=35.01 Aligned_cols=17 Identities=41% Similarity=0.237 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+.-+.+.|++|||||+.
T Consensus 21 ~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44567999999999975
No 460
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=35.81 E-value=17 Score=33.35 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
|.-+.+.||.|+|||.. +-++..++
T Consensus 33 Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 44566999999999974 55555555
No 461
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=35.76 E-value=31 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCc-eeeccCCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLT 405 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 405 (729)
....+||||.+-..+......|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999995 888888764
No 462
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=35.74 E-value=14 Score=35.23 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=13.2
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
+++.|++|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999863
No 463
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=35.60 E-value=15 Score=39.74 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
.+++++.||+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999975
No 464
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=35.22 E-value=15 Score=34.14 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=12.5
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999986
No 465
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=35.12 E-value=17 Score=34.95 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.1
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
+++.||+||||+++.
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 466
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.09 E-value=16 Score=35.89 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=17.4
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHH
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLER 186 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~ 186 (729)
.|.-+.+.||+|||||+. +-++..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL--l~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM--LNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTT
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhc
Confidence 356677999999999974 444443
No 467
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=34.96 E-value=19 Score=34.26 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=17.1
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcC
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYR 190 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~ 190 (729)
-.++.||+|+|||.+ +-++..++..
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 356899999999985 3444444443
No 468
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=34.71 E-value=15 Score=34.68 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.+.-+++.|+.|||||++
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 355688999999999985
No 469
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=34.64 E-value=35 Score=29.47 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=30.5
Q ss_pred CeEEEEe-CcHHHHHHHHHHHhhcCCceeeccCCCCH
Q 004808 371 SKVIIFS-GTKQAAHRLKILFGLAALKAAELHGNLTQ 406 (729)
Q Consensus 371 ~~vLIF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~ 406 (729)
.++|||| .+-..+..+...|...|+++..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57667778889999999999999998754
No 470
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=34.55 E-value=49 Score=34.10 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=16.9
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 165 ICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
+.+.|++|||||+. +-+|..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 44899999999975 455666554
No 471
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=34.32 E-value=13 Score=34.58 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=15.2
Q ss_pred EEEEcCCCchhhHHhhhhhhHHHh
Q 004808 165 ICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 165 vlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
+.+.|++|||||+. +-+|..++
T Consensus 5 v~IvG~SGsGKSTL--~~~L~~~~ 26 (171)
T 2f1r_A 5 LSIVGTSDSGKTTL--ITRMMPIL 26 (171)
T ss_dssp EEEEESCHHHHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHh
Confidence 56889999999975 33444443
No 472
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.07 E-value=16 Score=35.29 Aligned_cols=15 Identities=33% Similarity=0.142 Sum_probs=13.1
Q ss_pred EEEEcCCCchhhHHh
Q 004808 165 ICGSAITGSGKTAAF 179 (729)
Q Consensus 165 vlv~a~TGsGKT~a~ 179 (729)
+++.|++|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999863
No 473
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.04 E-value=18 Score=34.57 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=22.7
Q ss_pred eeEEEEeCcchhhcC---Ch--HHHHHHHHHhcCcCceEEEEecc
Q 004808 272 LAVLILDEADRLLEL---GF--SAEIHELVRLCPKRRQTMLFSAT 311 (729)
Q Consensus 272 i~~lVvDEah~ll~~---gf--~~~i~~il~~~~~~~q~il~SAT 311 (729)
-.+|||||||.++.. +. ...+..+........++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 348999999998532 11 11122222222345678888776
No 474
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=33.96 E-value=17 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.+.-+++.|+.|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356688999999999986
No 475
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=33.35 E-value=13 Score=36.64 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.6
Q ss_pred CCEEEEcCCCchhhHH
Q 004808 163 RDICGSAITGSGKTAA 178 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a 178 (729)
.-++++|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478999999999975
No 476
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=33.09 E-value=20 Score=36.77 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=16.9
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhc
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLY 189 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~ 189 (729)
-+.+.|++|||||+. +-+|..++.
T Consensus 92 ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred EEEEECCCCchHHHH--HHHHHhhcc
Confidence 355899999999974 445555543
No 477
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=32.96 E-value=23 Score=40.99 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCEE--EEcCCCchhhHHh
Q 004808 154 ACIPLALTGRDIC--GSAITGSGKTAAF 179 (729)
Q Consensus 154 ~~i~~ll~g~dvl--v~a~TGsGKT~a~ 179 (729)
..+..++.|.|++ ..|+||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3677888998754 6799999999863
No 478
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=32.88 E-value=17 Score=34.05 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+.+.|++|||||.+
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366999999999985
No 479
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=32.55 E-value=19 Score=34.91 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchhhHHh
Q 004808 163 RDICGSAITGSGKTAAF 179 (729)
Q Consensus 163 ~dvlv~a~TGsGKT~a~ 179 (729)
+-+++.||+||||+++.
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45678999999999864
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=32.51 E-value=23 Score=32.95 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=15.7
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERL 187 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l 187 (729)
-+++.|+.|||||.. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 366899999999974 23344443
No 481
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=32.37 E-value=1.3e+02 Score=25.09 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=33.6
Q ss_pred CCCeEEEEeC------cHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHH
Q 004808 369 FTSKVIIFSG------TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414 (729)
Q Consensus 369 ~~~~vLIF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 414 (729)
...+++||.. ....|.++..+|...|+.+..++=......+..+.+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 3578999987 489999999999999988776654444444444433
No 482
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=32.36 E-value=18 Score=34.73 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
+..+++.|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34588999999999986
No 483
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=32.13 E-value=19 Score=36.10 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.1
Q ss_pred HhcCCCEEEEcCCCchhhHHh
Q 004808 159 ALTGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a~ 179 (729)
+..|.-+++.|++|+|||+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 445777889999999999754
No 484
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=31.89 E-value=23 Score=29.72 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCC
Q 004808 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (729)
Q Consensus 369 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 404 (729)
...+++|||.+-......+.+|...|+.+..|.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356899999987778888999999999988888876
No 485
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=31.77 E-value=23 Score=36.02 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=12.0
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+.++|++|||||+.
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45899999999975
No 486
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.70 E-value=18 Score=34.18 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=12.7
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+.+.|++|||||+.
T Consensus 24 ~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366899999999975
No 487
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=31.68 E-value=81 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=37.7
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCc-eeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 428 (729)
+.++||+|++...+..+...+...++. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 678999999999999888888877888 888888764 2567888884
No 488
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=31.56 E-value=22 Score=34.34 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=25.7
Q ss_pred CCCeeEEEEeCcchhhcCChHHHHHHHHHhcCcCceEEEEec
Q 004808 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (729)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~il~~~~~~~q~il~SA 310 (729)
+.+-+++++||--.-++......+..++..+.....+++++.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 445567888888777777666666666655532223455443
No 489
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=31.49 E-value=19 Score=34.42 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhHH
Q 004808 164 DICGSAITGSGKTAA 178 (729)
Q Consensus 164 dvlv~a~TGsGKT~a 178 (729)
-+++.|++|||||++
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999985
No 490
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=31.16 E-value=19 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHh
Q 004808 162 GRDICGSAITGSGKTAAF 179 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a~ 179 (729)
+..+++.|+.|||||++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446889999999999863
No 491
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=31.12 E-value=20 Score=35.17 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356677999999999974
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.03 E-value=24 Score=41.06 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
..++|+.||+|+|||.+
T Consensus 201 ~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 46899999999999985
No 493
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.87 E-value=18 Score=40.35 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=19.1
Q ss_pred cCCCEEEEcCCCchhhHHhhhhhhHHHh
Q 004808 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~~lpil~~l~ 188 (729)
.|..+++.||+|+|||.. +-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 367899999999999975 33444443
No 494
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=30.24 E-value=20 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 004808 162 GRDICGSAITGSGKTAA 178 (729)
Q Consensus 162 g~dvlv~a~TGsGKT~a 178 (729)
|.-+.+.|++|||||+.
T Consensus 27 g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 27 APVITVDGPSGAGKGTL 43 (252)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677999999999985
No 495
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=30.15 E-value=19 Score=47.89 Aligned_cols=20 Identities=35% Similarity=0.288 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCchhhHH
Q 004808 159 ALTGRDICGSAITGSGKTAA 178 (729)
Q Consensus 159 ll~g~dvlv~a~TGsGKT~a 178 (729)
+..++.+|++||||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 44589999999999999975
No 496
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=30.01 E-value=12 Score=35.40 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.4
Q ss_pred EEEEcCCCchhhHH
Q 004808 165 ICGSAITGSGKTAA 178 (729)
Q Consensus 165 vlv~a~TGsGKT~a 178 (729)
+++.|+.|||||+.
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 57899999999975
No 497
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=29.90 E-value=21 Score=34.71 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchhhHH
Q 004808 161 TGRDICGSAITGSGKTAA 178 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a 178 (729)
.|.-+.+.||+|||||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 366677999999999974
No 498
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=29.86 E-value=43 Score=34.57 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=26.0
Q ss_pred CEEEEcCCCchhhHHhhhhhhHHHhcCCCCCCCcEEEEEcCcHHH
Q 004808 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (729)
Q Consensus 164 dvlv~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~vLIl~PtreL 208 (729)
-+++.+|+|+|||... +.++..+.... .+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~g---~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQY---PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHHC---TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhcC---CCceEEEEeccchh
Confidence 4679999999999764 55554443321 13468887765444
No 499
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=29.75 E-value=50 Score=35.55 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCc-eeeccCCCCHHHHHHHHHHHhcCCceEEEEc
Q 004808 370 TSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (729)
Q Consensus 370 ~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT 427 (729)
+.++||.||++..+......|...++. +..+||+... ..+|+|+|
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T 178 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVST 178 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEE
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=29.19 E-value=22 Score=35.38 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=0.0
Q ss_pred cCCCEEEEcCCCchhhHHh
Q 004808 161 TGRDICGSAITGSGKTAAF 179 (729)
Q Consensus 161 ~g~dvlv~a~TGsGKT~a~ 179 (729)
.|.-+.+.||+|||||+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Done!