BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004809
(729 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 567 bits (1462), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/651 (47%), Positives = 422/651 (64%), Gaps = 18/651 (2%)
Query: 85 TTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECES 144
TTH+S FL LNP SG WP S G+D+I+ V+D+G+WPES S+ D GM EIP RWKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 145 GTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERAS 204
GTQFN+S+CN+KLIGA +FNKG+LA +PT+ I MNS RD +GHGTH +S AG++ + S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 205 YFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXXXXXXXXXXXGVDVLSMSLGLDGVDL 264
+FGYA GTA G AP AR+A+YK +NEG+FTS GVD++S+S G + L
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 265 YEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREXXXXXXXXX 324
YED ++IA+F A+ K + VS SAGN+GP IG+L+NG PW++ VA+G DR
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 325 XXXXXXXSLYPGNSSLIDFPIVF---MDECLN---LAELKKVGQKIVVCQDKNDSLSNQV 378
SL+P + + D P+++ + +C + L++++ IV+C D D S+Q+
Sbjct: 241 GLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGD-FSDQM 299
Query: 379 DNIQNASVSGGVFISDFDGLEFFLQSSF--PAVFMNSKTGDILKDYIKIENNATATIQFQ 436
I A + +FIS+ G+ F ++F P V +N K G + +Y+K TATI FQ
Sbjct: 300 RIITRARLKAAIFISEDPGV--FRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQ 357
Query: 437 KTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS- 495
+T L TKPAP VA+ S+RGPS S + KPD++APG ILAA+P N+ + + + S
Sbjct: 358 ETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLST 417
Query: 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDDNK 555
++ L+SGTSMA P AAGIAA+L+ AHPEWSP+AIRSA+M IKD D+NK
Sbjct: 418 DYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD-SDNNK 476
Query: 556 PATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITR-SYSVNCSTS 614
ATP+ MGAGH++P++ALDPGL+YDAT +DYV+LLC+LN T ++ +TI R S S NCS
Sbjct: 477 AATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNP 536
Query: 615 SLDLNYPSFIAFFN--ANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLT 672
S DLNYPSFIA ++ N + Q+F+RTVTNVG+G +TY A + K SV P L
Sbjct: 537 SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILV 596
Query: 673 FKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPIVVTSL 723
FK K KQSY L I DE ++W+E G H V+SPIV + +
Sbjct: 597 FKNKNEKQSYTLTIRYIG--DEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 348 bits (892), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 235/665 (35%), Positives = 333/665 (50%), Gaps = 71/665 (10%)
Query: 85 TTHSSQFLGLN---PKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGE 141
TT S FLG P+ S+ +I++GV+DTG+WPES S++D G + P +WKG
Sbjct: 1 TTRSWDFLGFPLTVPRR-----SQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGT 55
Query: 142 CESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVE 201
CE+ F CN+K+IGAR ++ G P +N PRD NGHGTHT+STAAG V
Sbjct: 56 CETSNNFR---CNRKIIGARSYHIG----RPISPGDVNGPRDTNGHGTHTASTAAGGLVS 108
Query: 202 RASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXXXXXXXXXXXGVDVLSMSL-GLD 260
+A+ +G +GTA G PLAR+A YK WN+G + GVD++S+S+ G +
Sbjct: 109 QANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGAN 168
Query: 261 GVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREXXXXX 320
+ D +AI +F A+E+ I S SAGN GP T + PW+++VAA TMDR+
Sbjct: 169 PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQV 228
Query: 321 XXXXXXXXXXXSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDK--NDSLSNQV 378
S+ ++ +P+V + N K + C DK N +L
Sbjct: 229 QIGNGQSFQGVSINTFDNQY--YPLVSGRDIPNTGFDKSTSR---FCTDKSVNPNLLKGK 283
Query: 379 DNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDY-----IKIENNATATI 433
+ AS F DG V M S T D Y + N+ AT+
Sbjct: 284 IVVCEASFGPHEFFKSLDGAA--------GVLMTSNTRDYADSYPLPSSVLDPNDLLATL 335
Query: 434 Q------------FQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPS 481
+ F+ T + AP V S+SSRGP+ + V+KPD+ PG ILAAWPS
Sbjct: 336 RYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPS 395
Query: 482 NLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXX 541
V + FN+ SGTSM+CP GIA ++ +P WSPAAI+SA+M
Sbjct: 396 VAPVGGIRRN---TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452
Query: 542 XXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQ 601
P A G+GH+NP KA+ PGL+YDA DYV LC + ++
Sbjct: 453 ARF----------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVR 502
Query: 602 TITRSYSVNCSTSS---LDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTP 658
IT YS S ++ DLNYPSF + +++ + Q F RT+T+V STY A ++
Sbjct: 503 RITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN-QYFNRTLTSVAPQASTYRAMISA 561
Query: 659 LKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPI 718
+G SV+P+ L+F G ++S+ L + G + V L W + G H V+SPI
Sbjct: 562 PQGLTISVNPNVLSFNGLGDRKSFTLTVRG----SIKGFVVSASLVWSD--GVHYVRSPI 615
Query: 719 VVTSL 723
+TSL
Sbjct: 616 TITSL 620
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 22/127 (17%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
+ +SSRGP+ LKP+V+APG+ I+AA S ++ Q + + GT+MA
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 508 PQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKP--ATPIAMGAG 565
P AGIAALL AHP W+P +++A++ + D KP IA GAG
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALI--------------ETADIVKPDEIADIAYGAG 408
Query: 566 HINPDKA 572
+N KA
Sbjct: 409 RVNAYKA 415
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-----F 234
+P D NGHGTH +S AAG+ G G AP A++ K L +GS
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAASN-------GKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 235 TSXXXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGP 292
+ G+ V+++SLG D ++ A A + + V +AGN GP
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGP 283
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 343 FPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFL 402
+ + + + + K V KI + + + +++ N + A G V I D F +
Sbjct: 271 YDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVG-VLIYDNQDKGFPI 329
Query: 403 Q----SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE--LGTKPAPSVASYSSRGP 456
+ PA F++ K G +LKD N+ TI F T L T ++ +SS G
Sbjct: 330 ELPNVDQMPAAFISRKDGLLLKD------NSKKTITFNATPKVLPTASDTKLSRFSSWG- 382
Query: 457 SISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAAL 516
++ +KPD+ APG IL++ +N + SGTSM+ P AGI L
Sbjct: 383 -LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGL 428
Query: 517 LRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKA 572
L+ + P S + D+ +P GAG ++ KA
Sbjct: 429 LQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGTSMA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGTSMA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI++ P N + +SGT+MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI++ P N + +SGT+MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAKSGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGT MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTXMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAKSGTXMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +SGT MA P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWSTLPGN-------------KYGAKSGTXMASP 213
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSL 238
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAIM 534
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQ 251
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAIM 534
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQ 251
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + DVMAPG SI + P N + +GTS A P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSXASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
A +SS GP + DVMAPG SI + P + SGTSMA P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGG-------------KYGALSGTSMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
A +SS GP + DVMAPG SI + P + SGT+MA P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGG-------------KYGALSGTAMASP 216
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAI 533
AG AAL+ HP W+ +RS++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
Query: 389 GVFISDFDGLEFFLQ----SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE--LGT 442
GV I D F ++ PA F++ K G +LKD N TI F T L T
Sbjct: 307 GVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKD------NPQKTITFNATPKVLPT 360
Query: 443 KPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSG 502
++ +SS G ++ +KPD+ APG IL++ +N + SG
Sbjct: 361 ASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSG 405
Query: 503 TSMACPQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAM 562
TS + P AGI LL+ + P S + D+ +P
Sbjct: 406 TSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQ 465
Query: 563 GAGHINPDKA 572
GAG ++ KA
Sbjct: 466 GAGAVDAKKA 475
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + DVMAPG SI + P ++ +N GTSMA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTLPGG----------TYGAYN---GTSMATP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP W+ A +R
Sbjct: 226 HVAGAAALILSKHPTWTNAQVR 247
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
VA +SSRGP+ +KPDVMAPG IL+A S+LA + S + GTSMA
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 508 PQAAGIAALLR 518
P AG A LR
Sbjct: 259 PIVAGNVAQLR 269
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D+ APG SI +AW ++ +QT +GTSMA P AG+AAL +P +P
Sbjct: 196 DLFAPGASIPSAWYTSDTATQT-----------LNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 527 AAIRSAIM 534
A++ SAI+
Sbjct: 245 ASVASAIL 252
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTSMASP 224
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 225 HVAGAAALILSKHPNLSASQVR 246
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTSMASP 224
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 225 HVAGAAALILSKHPNLSASQVR 246
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTSMASP 224
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 225 HVAGAAALILSKHPNLSASQVR 246
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GTSMA P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 226 HVAGAAALILSKHPNLSASQVR 247
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GTSMA P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTSMASP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 226 HVAGAAALILSKHPNLSASQVR 247
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + DVMAPG SI + P ++ +N GT MA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTLPGG----------TYGAYN---GTCMATP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP W+ A +R
Sbjct: 226 HVAGAAALILSKHPTWTNAQVR 247
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTSMASP 224
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 225 HVAGAAALILSKHPNLSASQVR 246
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + DVMAPG SI + P ++ +N GT MA P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSIQSTLPGG----------TYGAYN---GTXMATP 225
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP W+ A +R
Sbjct: 226 HVAGAAALILSKHPTWTNAQVR 247
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG S+ + +PSN ++++ N GTSMA P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTYPSN----------TYTSLN---GTSMASP 224
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ +P S + +R
Sbjct: 225 HVAGAAALILSKYPTLSASQVR 246
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SXXXXX 241
D NGHGTH + T A ++ + LG AP + K L + GS + S
Sbjct: 59 DGNGHGTHVAGTVAA--LDNTT-------GVLGVAPNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 242 XXXXXXXGVDVLSMSLG 258
G+DV++MSLG
Sbjct: 110 IEWATQNGLDVINMSLG 126
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 383 NASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGT 442
NAS +G + +G F + + + + G+ Y +I N+T + T
Sbjct: 250 NASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEI--NSTKACK-------T 300
Query: 443 KPAPSVASYSSRG-PSISCPFVL--KPDVMAPGDSILAA----WPSNLAVSQTNSKLSFS 495
A + YS+ P + PF++ D+ P S+ A + L S T S
Sbjct: 301 AGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQ 360
Query: 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAI 533
++ +GTSMA P +G+A L+ HPE S + +R+A+
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAAL 398
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 448 VASYSSRG-PSISCPFVLKP---DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGT 503
VA YSSRG S + +V++ ++ APG S+ + W + +N SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGT 249
Query: 504 SMACPQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDD 553
SMA P +G+AA + +P S +RS + IGDD
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDD 299
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 179 NSPRDANGHGTHTSSTA-AGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS---- 233
NS D NGHGTH + TA A ++A + G AP A + YK L + GS
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIY--------GVAPDADLWAYKVLLDSGSGYSD 114
Query: 234 -FTSXXXXXXXXXXXXGVD-VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+ G ++SMSLG + ++ A A K + + +AGN G
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANN---SLISSAVNYAYSKGVLIVAAAGNSG 171
Query: 292 PFIGTLH--NGIPWVMTVAA 309
GT+ +P + VAA
Sbjct: 172 YSQGTIGYPGALPNAIAVAA 191
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D+ APG SI ++W S S N SGTSMA P AG+AAL +P SP
Sbjct: 198 DIYAPGSSITSSW-----------YTSNSATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 527 AAI 529
A +
Sbjct: 247 AQV 249
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 21/82 (25%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS G + +VMAPG + + +P+N +++ N GT MA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN----------TYATLN---GTXMASP 224
Query: 509 QAAGIAALLRGAHPEWSPAAIR 530
AG AAL+ HP S + +R
Sbjct: 225 HVAGAAALILSKHPNLSASQVR 246
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
VA +SSRGP+ +KPDVMAPG IL+A S+LA + S + GTS A
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 508 PQAAGIAALLR 518
P AG A LR
Sbjct: 259 PIVAGNVAQLR 269
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GTSMA P AG+AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTSMATPHVAGVAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 448 VASYSSRG-PSISCPFVLKP---DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGT 503
VA YSSRG S + +V++ ++ APG S+ + W + +N SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGT 249
Query: 504 SMACPQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDD 553
MA P +G+AA + +P S +RS + IGDD
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDD 299
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 179 NSPRDANGHGTHTSSTA-AGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS---- 233
NS D NGHGTH + TA A ++A + G AP A + YK L + GS
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIY--------GVAPDADLWAYKVLLDSGSGYSD 114
Query: 234 -FTSXXXXXXXXXXXXGVD-VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+ G ++SMSLG + ++ A A K + + +AGN G
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANN---SLISSAVNYAYSKGVLIVAAAGNSG 171
Query: 292 PFIGTLH--NGIPWVMTVAA 309
GT+ +P + VAA
Sbjct: 172 YSQGTIGYPGALPNAIAVAA 191
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GTSMA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GTSMA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GTSMA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GTSMA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GTSMA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GT MA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GT MA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GT MA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SXX 238
S +D NGHGTH + T A +IG LG AP A + K L GS S
Sbjct: 55 STQDGNGHGTHVAGTIAA--------LDNSIGV-LGVAPSAELYAVKVLGASGSGAISSI 105
Query: 239 XXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAI---ATFAAIEKNIFVSTSAGNQG 291
G+ V ++SLG P A A +A + + V ++GN+G
Sbjct: 106 AQGLEWAGNNGMHVANLSLG------SPSPSATLEQAVNSATSRGVLVVAASGNEG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D++APG ++ + +P + ++++ N GT MA P AG AAL++ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS----------TYASLN---GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 527 AAIR 530
IR
Sbjct: 238 VQIR 241
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SXX 238
S +D NGHGTH + T A +IG LG AP A + K L GS S
Sbjct: 55 STQDGNGHGTHVAGTIAA--------LDNSIGV-LGVAPSAELYAVKVLGASGSGAISSI 105
Query: 239 XXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAI---ATFAAIEKNIFVSTSAGNQG 291
G+ V ++SLG P A A +A + + V ++GN G
Sbjct: 106 AQGLEWAGNNGMHVANLSLG------SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPS--NLAVSQTNSKLSFSN---FNLQSG 502
VA +SSR +S V APG +IL+ P ++ N + +N ++ G
Sbjct: 328 VAGFSSRSDGVS--------VGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 503 TSMACPQAAGIAALLRGAHPEWSPAAIRSAI 533
TSMA P G+ A+L P P IR +
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLL 410
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
DV APG SI + +P+ S + SGTSMA P AG+A LL A S
Sbjct: 201 DVAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSA 245
Query: 527 AAIRSAI 533
+ IR+AI
Sbjct: 246 SNIRAAI 252
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SXX 238
+P++ NGHGTH + A A+ + G A GTAP A + + L N GS T +
Sbjct: 64 TPQNGNGHGTHCAGIA-------AAVTNNSTGIA-GTAPKASILAVRVLDNSGSGTWTAV 115
Query: 239 XXXXXXXXXXGVDVLSMSLG 258
G V+S+SLG
Sbjct: 116 ANGITYAADQGAKVISLSLG 135
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 287 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 323
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 324 TPHVSGVVALIQAAY 338
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 327 TPHVSGVVALIQAAY 341
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 327 TPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 327 TPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 327 TPHVSGVVALIQAAY 341
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SXXX 239
P D N HGTH + AA E + G A G AP R+ +AL GS T S
Sbjct: 66 PMDLNNHGTHVAGIAA---AETNNATGIA-----GMAPNTRILAVRALDRNGSGTLSDIA 117
Query: 240 XXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
G +V+++SLG D + + A A K V +AGN G
Sbjct: 118 DAIIYAADSGAEVINLSLGC---DCHTTTLENAVNYAWNKGSVVVAAAGNNG 166
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
DV+APG I+ S ++ + + SGTSMA P AG+AALL
Sbjct: 202 DVVAPGVDIV-------------STITGNRYAYMSGTSMASPHVAGLAALL 239
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 212 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 248
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 249 TPHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 246
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 247 TPHVSGVVALIQAAY 261
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
DV APG I + +P+ S + SGTSMA P AG+A LL A S
Sbjct: 201 DVAAPGSWIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSA 245
Query: 527 AAIRSAI 533
+ IR+AI
Sbjct: 246 SNIRAAI 252
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SXX 238
+P++ NGHGTH + A A+ + G A GTAP A + + L N GS T +
Sbjct: 64 TPQNGNGHGTHCAGIA-------AAVTNNSTGIA-GTAPKASILAVRVLDNSGSGTWTAV 115
Query: 239 XXXXXXXXXXGVDVLSMSLG 258
G V+S+SLG
Sbjct: 116 ANGITYAADQGAKVISLSLG 135
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 448 VASYSSRG-PSISCPFVLKP---DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGT 503
VA +SSRG + +V++ ++ APG ++ + W + SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD-------------GGYATISGT 248
Query: 504 SMACPQAAGIAALLRGAHPEWSPAAIRSAIM 534
SMA P AAG+AA + P S +R +
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQ 279
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 257
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 258 TPHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT+MA
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 257
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 258 TPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT MA
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTXMA 246
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 247 TPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 23/75 (30%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R +P+V APG IL+ +P + ++ GT MA
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTCMA 246
Query: 507 CPQAAGIAALLRGAH 521
P +G+ AL++ A+
Sbjct: 247 TPHVSGVVALIQAAY 261
>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
Length = 581
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 647 EGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWI 706
E + A + GF+++ +L F +Q +++RIE PN + +++ Y W+
Sbjct: 495 ERIEERLAYIADHLGFSWTELARELDFT---EEQIHQIRIENPNSLQDQSHALLKY--WL 549
Query: 707 ETGGKHVVKSPIV 719
E GKH + +V
Sbjct: 550 ERDGKHATDTNLV 562
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRG 519
D+ APG SI + W N SGTSMA P AG+AA L G
Sbjct: 201 DIFAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFG 240
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 447 SVASYSSRGPSIS-CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505
SV + +SRG S + + D+ APG IL+ V + ++ +GTSM
Sbjct: 224 SVGATTSRGIRASFSNYGVDVDLAAPGQDILST------VDSGTRRPVSDAYSFMAGTSM 277
Query: 506 ACPQAAGIAALL 517
A P +G+AAL+
Sbjct: 278 ATPHVSGVAALV 289
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 39/198 (19%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+V +++SR P I + V APG +I A+ P + + S L +GTS A
Sbjct: 418 NVYTWTSRDPCIDGGQGVT--VCAPGGAI-ASVP----------QFTXSKSQLXNGTSXA 464
Query: 507 CPQAAGIAAL----LRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAM 562
P AG AL L+ + E+SP +I+ AI P A
Sbjct: 465 APHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------------VDPFAQ 510
Query: 563 GAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVNCSTSSLDLNYPS 622
G G +N +KA ++ TE S L +++ + + ++Y
Sbjct: 511 GHGLLNVEKA------FEHLTEHRQSKDNXLRFSVRVGNNADKGIHLRQGVQRNSIDYNV 564
Query: 623 FIA--FFNANESKSVQEF 638
+I F+N E+ +F
Sbjct: 565 YIEPIFYNDKEADPKDKF 582
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 447 SVASYSSRGPSIS-CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505
SV + +SRG S + + D+ APG IL+ V + ++ +GTSM
Sbjct: 224 SVGATTSRGIRASFSNYGVDVDLAAPGQDILST------VDSGTRRPVSDAYSFMAGTSM 277
Query: 506 ACPQAAGIAALL 517
A P +G+AAL+
Sbjct: 278 ATPHVSGVAALV 289
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 447 SVASYSSRGPSIS-CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505
SV + +SRG S + + D+ APG IL+ V + ++ +GTSM
Sbjct: 224 SVGATTSRGIRASFSNYGVDVDLAAPGQDILST------VDSGTRRPVSDAYSFMAGTSM 277
Query: 506 ACPQAAGIAALL 517
A P +G+AAL+
Sbjct: 278 ATPHVSGVAALV 289
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRG 519
D+ APG +IL+ W N SGTSMA P G+ A L G
Sbjct: 203 DIFAPGSNILSTWIGGTT-------------NTISGTSMATPHIVGLGAYLAG 242
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXXXXX 242
D NGHGTH + T A A+ G + +G AP A + + KAL +G S
Sbjct: 82 DNNGHGTHVAGTVA------AAETGSGV---VGVAPKADLFIIKALSGDG---SGEMGWI 129
Query: 243 XXXXXXGVD----------VLSMSLG--LDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQ 290
VD +++MSLG D +L++ A A+ N+ V +AGN+
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD-----AVKYAVSNNVSVVXAAGNE 184
Query: 291 G 291
G
Sbjct: 185 G 185
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 46/183 (25%)
Query: 131 MTEIPSRWK----------GECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180
+ E P+ W+ G ++G Q + +++IG +
Sbjct: 27 IVEAPAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLTTDYGGDETNFS----- 81
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXXX 240
D NGHGTH + T A A+ G + +G AP A + + KAL +G S
Sbjct: 82 --DNNGHGTHVAGTVA------AAETGSGV---VGVAPKADLFIIKALSGDG---SGEMG 127
Query: 241 XXXXXXXXGVD----------VLSMSLG--LDGVDLYEDPVAIATFAAIEKNIFVSTSAG 288
VD +++MSLG D +L++ A A+ N+ V +AG
Sbjct: 128 WIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD-----AVKYAVSNNVSVVXAAG 182
Query: 289 NQG 291
N+G
Sbjct: 183 NEG 185
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 13/51 (25%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
D+ PG SIL+ W S SGTSMA P AG+AA L
Sbjct: 200 DIFGPGTSILSTWIGGSTRSI-------------SGTSMATPHVAGLAAYL 237
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXXXXX 242
D NGHGTH + T A A+ G + +G AP A + + KAL +G S
Sbjct: 82 DNNGHGTHVAGTVA------AAETGSGV---VGVAPKADLFIIKALSGDG---SGEMGWI 129
Query: 243 XXXXXXGVD----------VLSMSLG--LDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQ 290
VD +++MSLG D +L++ A A+ N+ V +AGN+
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD-----AVKYAVSNNVSVVCAAGNE 184
Query: 291 G 291
G
Sbjct: 185 G 185
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 13/51 (25%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
D+ PG SIL+ W S SGTSMA P AG+AA L
Sbjct: 200 DIFGPGTSILSTWIGGSTRSI-------------SGTSMATPHVAGLAAYL 237
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 21/76 (27%)
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL------R 518
K ++APG IL A P+ + SGTS A P +G+AALL R
Sbjct: 198 KQGILAPGKDILGAKPNGGTIRL-------------SGTSFATPIVSGVAALLLSLQIKR 244
Query: 519 GAHPEWSPAAIRSAIM 534
G P+ P +++A++
Sbjct: 245 GEKPD--PQKVKNALL 258
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXXXXX 242
D NGHGTH + T A A+ G + +G AP A + + KAL +G S
Sbjct: 64 DNNGHGTHVAGTVA------AAETGSGV---VGVAPKADLFIIKALSGDG---SGEMGWI 111
Query: 243 XXXXXXGVD----------VLSMSLG--LDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQ 290
VD +++MSLG D +L++ A A+ N+ V +AGN+
Sbjct: 112 AKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD-----AVKYAVSNNVSVVCAAGNE 166
Query: 291 G 291
G
Sbjct: 167 G 167
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
+ APG +IL S + V Q S ++ +++GTSMA P +G+AAL+
Sbjct: 247 LAAPGTNIL----STIDVGQAGPVRS--SYGMKAGTSMAAPHVSGVAALV 290
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
+ APG +IL S + V Q S ++ +++GTSMA P +G+AAL+
Sbjct: 247 LAAPGTNIL----STIDVGQAGPVRS--SYGMKAGTSMAAPHVSGVAALV 290
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAAL 516
D+ APG I +AW + SGTSMA P AG+AAL
Sbjct: 196 DLFAPGSQIKSAWYD-------------GGYKTISGTSMATPHVAGVAAL 232
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
K ++APG+ IL A P T + + GTSMA P GI+ALL
Sbjct: 265 KEGILAPGEEILGAQPC------TEEPVRLT------GTSMAAPVMTGISALL 305
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
K ++APG+ IL A P T + + GTSMA P GI+ALL
Sbjct: 265 KEGILAPGEEILGAQPC------TEEPVRLT------GTSMAAPVMTGISALL 305
>pdb|2Z1E|A Chain A, Crystal Structure Of Hype From Thermococcus Kodakaraensis
(Outward Form)
pdb|2Z1F|A Chain A, Crystal Structure Of Hype From Thermococcus Kodakaraensis
(Inward Form)
pdb|3VYS|C Chain C, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I)
pdb|3VYT|C Chain C, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I
Inward)
pdb|3VYU|C Chain C, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form Ii)
Length = 338
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 65 ALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIII 112
A KS+ G + D+P++P +S+ LG++P + V+ GK +++
Sbjct: 235 ARKSNVGILVREADIPIRPEVRAASEMLGISP----YDVANEGKVVMV 278
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
K ++APG+ IL A P ++ +L+ GTSMA P GI+ALL
Sbjct: 247 KEGILAPGEEILGAQPC----TEEPVRLT--------GTSMAAPVMTGISALL 287
>pdb|3S88|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
Length = 298
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 646 GEGVSTYTASVTPLKGFNFSVDPDKLTFK-GKYAKQSYKLRIEGPN 690
G GVST S T GF V P ++++ G++A+ Y L I+ P+
Sbjct: 57 GSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPD 102
>pdb|3VE0|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 298
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 646 GEGVSTYTASVTPLKGFNFSVDPDKLTFK-GKYAKQSYKLRIEGPN 690
G GVST S T GF V P ++++ G++A+ Y L I+ P+
Sbjct: 57 GSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPD 102
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
D+ PG IL+ W S SGTSMA P AG+AA L
Sbjct: 200 DIFGPGTDILSTWIGGSTRSI-------------SGTSMATPHVAGLAAYL 237
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 21/73 (28%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL------RGAH 521
++APG+ IL A P +LS GTS A P +G+AALL RG
Sbjct: 198 ILAPGEDILGAKPGG-----GTERLS--------GTSFATPIVSGVAALLLSEQVRRGET 244
Query: 522 PEWSPAAIRSAIM 534
P+ P +R ++
Sbjct: 245 PD--PQKVRQLLL 255
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 21/73 (28%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL------RGAH 521
++APG+ IL A P +LS GTS A P +G+AALL RG
Sbjct: 207 ILAPGEDILGAKPGG-----GTERLS--------GTSFATPIVSGVAALLLSEQVRRGET 253
Query: 522 PEWSPAAIRSAIM 534
P+ P +R ++
Sbjct: 254 PD--PQKVRQLLL 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,526,424
Number of Sequences: 62578
Number of extensions: 821350
Number of successful extensions: 2054
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 221
length of query: 729
length of database: 14,973,337
effective HSP length: 106
effective length of query: 623
effective length of database: 8,340,069
effective search space: 5195862987
effective search space used: 5195862987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)