Query 004809
Match_columns 729
No_of_seqs 434 out of 2850
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 13:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.5E-54 3.2E-59 464.0 31.2 303 81-538 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.6E-48 3.5E-53 434.4 24.5 299 90-579 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 3.4E-48 7.3E-53 406.1 25.4 270 104-574 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 5.4E-48 1.2E-52 401.5 25.9 243 101-541 1-254 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 6.3E-48 1.4E-52 410.0 25.6 286 107-537 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 3.2E-47 7E-52 414.5 29.8 311 100-574 2-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 9E-47 2E-51 420.8 28.4 400 105-565 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 7.4E-46 1.6E-50 397.8 28.5 293 98-576 3-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.1E-45 2.4E-50 386.0 27.1 246 100-542 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 6E-45 1.3E-49 387.9 29.8 287 107-572 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 1.2E-44 2.7E-49 383.7 26.1 267 108-538 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 2E-44 4.4E-49 371.2 25.3 234 110-565 1-239 (239)
13 cd07481 Peptidases_S8_Bacillop 100.0 1.5E-43 3.2E-48 371.0 25.8 247 107-538 1-264 (264)
14 cd07493 Peptidases_S8_9 Peptid 100.0 1.4E-43 3.1E-48 370.5 24.9 243 109-538 1-261 (261)
15 cd07485 Peptidases_S8_Fervidol 100.0 4E-43 8.7E-48 369.5 26.8 262 100-536 2-273 (273)
16 cd07487 Peptidases_S8_1 Peptid 100.0 1.8E-42 3.9E-47 362.8 27.4 256 107-538 1-264 (264)
17 cd04857 Peptidases_S8_Tripepti 100.0 2E-42 4.3E-47 374.7 27.7 220 182-540 182-412 (412)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 7.5E-42 1.6E-46 356.4 26.0 232 100-539 17-255 (255)
19 cd04847 Peptidases_S8_Subtilis 100.0 4.1E-42 8.8E-47 365.2 21.8 262 111-538 2-291 (291)
20 cd07484 Peptidases_S8_Thermita 100.0 4E-41 8.6E-46 352.0 26.9 241 97-540 18-259 (260)
21 cd07494 Peptidases_S8_10 Pepti 100.0 1.5E-41 3.3E-46 360.1 23.9 252 97-542 10-287 (298)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.7E-41 8E-46 351.0 26.3 253 109-538 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 5.6E-41 1.2E-45 355.5 26.6 207 180-536 66-285 (285)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 4.6E-41 9.9E-46 357.7 25.6 277 103-538 2-293 (293)
25 cd07480 Peptidases_S8_12 Pepti 100.0 1.4E-40 2.9E-45 354.4 25.4 264 102-570 2-296 (297)
26 cd07473 Peptidases_S8_Subtilis 100.0 4E-40 8.6E-45 344.2 26.9 249 108-538 2-259 (259)
27 cd07498 Peptidases_S8_15 Pepti 100.0 3.7E-40 8.1E-45 340.9 24.8 239 110-536 1-242 (242)
28 cd04843 Peptidases_S8_11 Pepti 100.0 2.2E-40 4.7E-45 347.5 20.5 244 98-538 5-277 (277)
29 KOG1153 Subtilisin-related pro 100.0 1.2E-40 2.5E-45 346.8 16.0 289 43-539 135-462 (501)
30 cd07477 Peptidases_S8_Subtilis 100.0 3.7E-39 8.1E-44 330.5 25.4 226 109-536 1-229 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 2E-40 4.4E-45 350.5 15.0 273 111-574 1-282 (282)
32 cd07482 Peptidases_S8_Lantibio 100.0 6.8E-39 1.5E-43 341.2 25.0 251 109-536 1-294 (294)
33 cd07491 Peptidases_S8_7 Peptid 100.0 4.5E-39 9.8E-44 332.1 21.9 215 107-520 2-229 (247)
34 cd07492 Peptidases_S8_8 Peptid 100.0 3.3E-38 7.1E-43 322.1 24.7 221 109-538 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 5.5E-39 1.2E-43 342.5 19.1 248 97-538 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 1.1E-37 2.4E-42 326.5 23.8 242 106-538 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 3.9E-35 8.5E-40 312.7 13.0 349 12-580 64-471 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.7E-31 3.6E-36 296.7 26.6 238 184-574 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 6.5E-32 1.4E-36 278.0 16.8 193 181-537 33-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 2E-30 4.3E-35 265.9 25.6 197 180-536 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 2.7E-23 5.8E-28 236.2 22.9 271 98-574 130-420 (508)
42 cd04056 Peptidases_S53 Peptida 99.7 3.4E-17 7.3E-22 178.9 14.7 100 213-315 83-199 (361)
43 KOG3526 Subtilisin-like propro 99.7 3.3E-18 7.2E-23 174.7 5.4 306 98-595 151-475 (629)
44 cd02133 PA_C5a_like PA_C5a_lik 99.4 1.4E-12 3E-17 123.6 11.2 115 339-458 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.3 1.1E-11 2.3E-16 114.9 12.1 111 320-432 2-125 (126)
46 PF02225 PA: PA domain; Inter 98.8 1.2E-08 2.7E-13 90.3 7.5 82 342-423 7-101 (101)
47 cd04816 PA_SaNapH_like PA_SaNa 98.7 1.3E-07 2.8E-12 87.1 9.6 82 349-430 30-119 (122)
48 cd02127 PA_hPAP21_like PA_hPAP 98.6 1.5E-07 3.3E-12 85.7 9.4 86 349-434 22-117 (118)
49 cd04818 PA_subtilisin_1 PA_sub 98.6 1.6E-07 3.4E-12 85.9 9.1 81 350-430 29-115 (118)
50 cd02130 PA_ScAPY_like PA_ScAPY 98.6 5.2E-07 1.1E-11 83.0 12.0 90 342-431 23-120 (122)
51 PF05922 Inhibitor_I9: Peptida 98.6 4.2E-08 9.1E-13 83.4 4.1 67 10-84 16-82 (82)
52 cd00538 PA PA: Protease-associ 98.5 4E-07 8.7E-12 84.0 8.8 79 351-429 33-122 (126)
53 cd02129 PA_hSPPL_like PA_hSPPL 98.5 5E-07 1.1E-11 81.9 9.0 85 341-425 20-114 (120)
54 cd02122 PA_GRAIL_like PA _GRAI 98.5 5.1E-07 1.1E-11 84.5 9.0 84 349-432 45-137 (138)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.5 5.6E-07 1.2E-11 83.2 8.7 82 349-430 28-123 (126)
56 cd04817 PA_VapT_like PA_VapT_l 98.4 1E-06 2.2E-11 82.2 9.0 82 343-425 38-133 (139)
57 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.9E-06 4.2E-11 79.5 10.6 81 350-430 24-124 (127)
58 KOG3525 Subtilisin-like propro 98.4 9.1E-07 2E-11 98.0 9.7 158 97-295 22-189 (431)
59 cd02132 PA_GO-like PA_GO-like: 98.4 2.6E-06 5.7E-11 80.1 10.7 87 342-430 39-136 (139)
60 cd04813 PA_1 PA_1: Protease-as 98.3 2.6E-06 5.7E-11 77.4 8.4 75 349-425 28-111 (117)
61 cd04819 PA_2 PA_2: Protease-as 98.3 1E-05 2.2E-10 75.0 12.4 88 340-427 22-121 (127)
62 PF06280 DUF1034: Fn3-like dom 98.3 8.2E-06 1.8E-10 73.9 11.4 84 634-719 8-112 (112)
63 cd02124 PA_PoS1_like PA_PoS1_l 98.3 3E-06 6.6E-11 78.4 8.5 80 350-430 43-126 (129)
64 COG4934 Predicted protease [Po 98.2 1.3E-05 2.9E-10 95.6 13.3 95 212-309 287-395 (1174)
65 cd02123 PA_C_RZF_like PA_C-RZF 98.1 8.7E-06 1.9E-10 77.8 8.3 79 350-428 52-142 (153)
66 cd02128 PA_TfR PA_TfR: Proteas 97.4 0.00073 1.6E-08 65.9 8.9 85 342-426 30-156 (183)
67 cd04815 PA_M28_2 PA_M28_2: Pro 97.3 0.0008 1.7E-08 62.9 7.7 73 358-430 36-131 (134)
68 cd04814 PA_M28_1 PA_M28_1: Pro 96.5 0.0059 1.3E-07 57.3 6.6 57 340-396 19-100 (142)
69 cd02121 PA_GCPII_like PA_GCPII 96.1 0.01 2.2E-07 60.0 6.0 54 341-394 45-104 (220)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.1 0.024 5.1E-07 52.9 7.8 54 341-394 22-94 (137)
71 KOG2442 Uncharacterized conser 96.0 0.015 3.3E-07 63.4 7.2 73 358-430 92-172 (541)
72 PF14874 PapD-like: Flagellar- 96.0 0.18 3.9E-06 44.4 12.9 81 634-721 20-100 (102)
73 cd04822 PA_M28_1_3 PA_M28_1_3: 96.0 0.031 6.8E-07 53.1 8.3 53 342-394 21-98 (151)
74 cd02131 PA_hNAALADL2_like PA_h 95.9 0.012 2.7E-07 55.1 5.1 53 342-394 16-73 (153)
75 KOG3920 Uncharacterized conser 95.2 0.02 4.3E-07 53.2 3.8 95 342-436 65-174 (193)
76 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.064 1.4E-06 44.9 6.7 60 634-693 5-65 (78)
77 KOG4628 Predicted E3 ubiquitin 93.3 0.18 4E-06 53.9 6.6 67 358-424 76-148 (348)
78 PF11614 FixG_C: IG-like fold 92.4 3.1 6.7E-05 37.7 12.7 57 635-692 32-88 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 90.4 0.49 1.1E-05 45.4 5.3 54 341-394 22-101 (157)
80 COG1470 Predicted membrane pro 87.4 5.9 0.00013 43.9 11.5 71 634-706 397-468 (513)
81 PF06030 DUF916: Bacterial pro 84.7 19 0.00041 32.9 11.9 70 634-706 27-119 (121)
82 KOG1114 Tripeptidyl peptidase 78.0 1.5 3.2E-05 52.1 2.6 24 104-127 77-100 (1304)
83 COG1470 Predicted membrane pro 75.1 17 0.00036 40.5 9.4 62 634-696 284-351 (513)
84 PF00345 PapD_N: Pili and flag 71.9 52 0.0011 29.7 10.8 53 636-690 16-75 (122)
85 TIGR02745 ccoG_rdxA_fixG cytoc 63.4 29 0.00063 39.1 8.6 55 635-690 347-401 (434)
86 PF00635 Motile_Sperm: MSP (Ma 61.4 65 0.0014 28.1 9.1 52 635-689 19-70 (109)
87 PF07718 Coatamer_beta_C: Coat 50.1 1.7E+02 0.0037 27.5 9.8 68 635-706 70-138 (140)
88 PF12690 BsuPI: Intracellular 41.1 1.1E+02 0.0024 25.8 6.7 53 636-689 2-71 (82)
89 PF07705 CARDB: CARDB; InterP 38.8 1.5E+02 0.0032 25.1 7.5 52 634-689 19-72 (101)
90 PF08821 CGGC: CGGC domain; I 37.0 1.6E+02 0.0036 26.2 7.4 44 214-259 31-75 (107)
91 PF02845 CUE: CUE domain; Int 36.4 34 0.00073 24.7 2.4 23 514-536 5-27 (42)
92 smart00635 BID_2 Bacterial Ig- 35.9 1.2E+02 0.0025 25.3 6.1 38 663-707 4-41 (81)
93 PF07610 DUF1573: Protein of u 35.7 1.4E+02 0.0031 21.9 5.7 43 640-686 2-45 (45)
94 PF08260 Kinin: Insect kinin p 28.5 26 0.00056 16.2 0.4 6 450-455 3-8 (8)
95 PF04744 Monooxygenase_B: Mono 25.6 3.2E+02 0.0069 29.9 8.4 53 634-688 263-335 (381)
96 PRK15019 CsdA-binding activato 24.8 68 0.0015 30.4 3.0 33 498-531 77-109 (147)
97 PF05753 TRAP_beta: Translocon 24.2 4.2E+02 0.009 26.1 8.5 68 634-707 38-114 (181)
98 TIGR03391 FeS_syn_CsdE cystein 23.9 73 0.0016 29.8 3.0 34 498-532 72-105 (138)
99 PF04255 DUF433: Protein of un 23.3 66 0.0014 24.9 2.2 37 498-534 12-54 (56)
100 PF13940 Ldr_toxin: Toxin Ldr, 21.4 71 0.0015 22.0 1.7 13 505-517 14-26 (35)
101 smart00546 CUE Domain that may 21.0 1.3E+02 0.0028 21.7 3.2 24 513-536 5-28 (43)
102 PRK09296 cysteine desufuration 20.4 95 0.0021 29.1 3.0 33 498-531 67-99 (138)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-54 Score=464.00 Aligned_cols=303 Identities=54% Similarity=0.841 Sum_probs=261.9
Q ss_pred cCCCCCCCCcccCCCCCCC--CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeee
Q 004809 81 VKPHTTHSSQFLGLNPKSG--AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158 (729)
Q Consensus 81 ~~~~~~~s~~~~gl~~~~~--~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kii 158 (729)
++|+++++++|+|+..... +|..+++|+||+|||||||||++||+|.+.+..+++..|.+.|..+..+...+||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 5789999999999976555 47789999999999999999999999999888899999999999998888888999999
Q ss_pred ceeeccccccccCC-CCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCC-CCChH
Q 004809 159 GARFFNKGLLAKNP-TITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE-GSFTS 236 (729)
Q Consensus 159 g~~~~~~~~~~~~~-~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~ 236 (729)
+.++|.++++.... +.+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 99999887543322 22344567889999999999999999877666666666778999999999999999884 48899
Q ss_pred HHHHHHHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccc
Q 004809 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREL 316 (729)
Q Consensus 237 ~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~ 316 (729)
++++||++|+++|++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999986655667888888889999999999999999988888889999999999821
Q ss_pred cEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCC
Q 004809 317 GATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFD 396 (729)
Q Consensus 317 ~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 396 (729)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEE
Q 004809 397 GLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSIL 476 (729)
Q Consensus 397 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~ 476 (729)
+||||+|||.+|+
T Consensus 236 -------------------------------------------------------------------~~~di~apG~~i~ 248 (307)
T cd04852 236 -------------------------------------------------------------------LKPDIAAPGVDIL 248 (307)
T ss_pred -------------------------------------------------------------------CccceeeccCcee
Confidence 5789999999999
Q ss_pred eecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 477 AAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 477 sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
+++..... .........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 249 ~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 249 AAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99875311 111223468999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.6e-48 Score=434.44 Aligned_cols=299 Identities=20% Similarity=0.213 Sum_probs=212.2
Q ss_pred cccCCCC--CCCCCc--CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCee---eceee
Q 004809 90 QFLGLNP--KSGAWP--VSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKL---IGARF 162 (729)
Q Consensus 90 ~~~gl~~--~~~~w~--~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~~ 162 (729)
..|+++. ++.+|. .+.+|+||+|||||||||++||+|.++=... +....|. ..+. .+|+.. +..++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Gr----dgiD--dD~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGR----KGID--DDNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCc----cccc--cccCCccccccccc
Confidence 3456654 345665 3578999999999999999999998641000 0000010 0000 011111 11122
Q ss_pred ccccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHH
Q 004809 163 FNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAA 241 (729)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~a 241 (729)
|.++ ...|.|..||||||||||||...++ .| +.||||+|+|+.+|+++..+ +..+++++|
T Consensus 367 fVd~-----------~~~P~D~~GHGTHVAGIIAA~gnN~---~G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~A 427 (639)
T PTZ00262 367 FVNN-----------DGGPMDDNYHGTHVSGIISAIGNNN---IG-----IVGVDKRSKLIICKALDSHKLGRLGDMFKC 427 (639)
T ss_pred ccCC-----------CCCCCCCCCcchHHHHHHhccccCC---Cc-----eeeeecccccceEEEecCCCCccHHHHHHH
Confidence 2211 1346889999999999999975332 22 37999999999999998776 788999999
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------cCC----CCCc
Q 004809 242 IDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT--------------LHN----GIPW 303 (729)
Q Consensus 242 i~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t--------------~~~----~~p~ 303 (729)
|+||++.|++|||||||+.. +...+..++..|.++|++||+||||+|+.... ++. ..|+
T Consensus 428 I~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~n 504 (639)
T PTZ00262 428 FDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRN 504 (639)
T ss_pred HHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCC
Confidence 99999999999999999642 34567778889999999999999999864321 111 2467
Q ss_pred eEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHh
Q 004809 304 VMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQN 383 (729)
Q Consensus 304 vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~ 383 (729)
+|+|||+..+..
T Consensus 505 VIaVGAv~~d~~-------------------------------------------------------------------- 516 (639)
T PTZ00262 505 VITVSNLIKDKN-------------------------------------------------------------------- 516 (639)
T ss_pred EEEEeeccCCCC--------------------------------------------------------------------
Confidence 788877532110
Q ss_pred CCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCC
Q 004809 384 ASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFV 463 (729)
Q Consensus 384 ~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~i 463 (729)
.....+.||++|.
T Consensus 517 ------------------------------------------------------------~~~s~s~~Snyg~------- 529 (639)
T PTZ00262 517 ------------------------------------------------------------NQYSLSPNSFYSA------- 529 (639)
T ss_pred ------------------------------------------------------------CcccccccccCCC-------
Confidence 0002344566553
Q ss_pred ccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC
Q 004809 464 LKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNT 543 (729)
Q Consensus 464 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~ 543 (729)
.++||+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++...
T Consensus 530 ~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~ 596 (639)
T PTZ00262 530 KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL 596 (639)
T ss_pred CcceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC
Confidence 246999999999999874 4799999999999999999999999999999999999999999876321
Q ss_pred CCCcccCCCCCCCCCCCCCCccccCccCcCCCCccc
Q 004809 544 NSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIY 579 (729)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~ 579 (729)
.....| .|+||+.+|++..+-+
T Consensus 597 -------------~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------------KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------------CCcccc-CcEEcHHHHHHHHHhc
Confidence 011223 3899999999865544
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.4e-48 Score=406.08 Aligned_cols=270 Identities=25% Similarity=0.281 Sum_probs=203.5
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCC
Q 004809 104 SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRD 183 (729)
Q Consensus 104 ~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D 183 (729)
+++|+||+|+|||||||.+||+|.+...+..+..+ .+... .....|
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-----------~~~~~d 46 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-----------LDGGSG 46 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-----------cCCCCC
Confidence 57899999999999999999965433111111111 11111 023457
Q ss_pred CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 004809 184 ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVD 263 (729)
Q Consensus 184 ~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~ 263 (729)
..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||++.|++|||||||....+
T Consensus 47 ~~gHGT~vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~ 104 (275)
T cd05562 47 GGDEGRAMLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEP 104 (275)
T ss_pred CCchHHHHHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCC
Confidence 8899999999993 89999999999874 4578999999999999999999999986544
Q ss_pred CC-CcHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCC
Q 004809 264 LY-EDPVAIATFAAIEK-NIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSL 340 (729)
Q Consensus 264 ~~-~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~ 340 (729)
.+ ...+..++.++.++ |++||+||||+|+... ..+...|++|+|||++.+.........+
T Consensus 105 ~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----------------- 167 (275)
T cd05562 105 FFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----------------- 167 (275)
T ss_pred cccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----------------
Confidence 33 34677777888887 9999999999998543 3467889999999976443210000000
Q ss_pred ceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHH
Q 004809 341 IDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILK 420 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 420 (729)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC-CEEeecCCCCCccccCCCCCCCCcee
Q 004809 421 DYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD-SILAAWPSNLAVSQTNSKLSFSNFNL 499 (729)
Q Consensus 421 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~ 499 (729)
........+.|++|||+.+.+ +||||+|||. ++.+.+.. +.|..
T Consensus 168 --------------------~~~~~s~~~~~~~~~p~~~~~--~~~di~Apgg~~~~~~~~~-------------~~~~~ 212 (275)
T cd05562 168 --------------------PGGTPSSFDPVGIRLPTPEVR--QKPDVTAPDGVNGTVDGDG-------------DGPPN 212 (275)
T ss_pred --------------------cCCCcccccCCcccCcCCCCC--cCCeEEcCCcccccCCCcC-------------Cceee
Confidence 000011345688899988765 9999999975 44444432 57899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 500 QSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 500 ~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 213 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-------------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 213 FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-------------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-------------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999999999999987642 2356689999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.4e-48 Score=401.46 Aligned_cols=243 Identities=27% Similarity=0.409 Sum_probs=197.1
Q ss_pred CcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCC
Q 004809 101 WPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180 (729)
Q Consensus 101 w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 180 (729)
|.++++|+||+|||||+|||.+||+|.+.- ...+|... ..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~------------~~ 40 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTNE------------KT 40 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCCC------------CC
Confidence 899999999999999999999999997420 00111110 23
Q ss_pred CCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCC
Q 004809 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGL 259 (729)
Q Consensus 181 ~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~ 259 (729)
..|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..+.++++|++|++.++||||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999732 137999999999999998776 567789999999999999999999997
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCC
Q 004809 260 DGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT--LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGN 337 (729)
Q Consensus 260 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~ 337 (729)
.. +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||...
T Consensus 110 ~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------------------- 162 (255)
T cd07479 110 PD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------------------- 162 (255)
T ss_pred CC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------------------
Confidence 43 334567777778889999999999999986444 4567789999998431
Q ss_pred CCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHH
Q 004809 338 SSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGD 417 (729)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~ 417 (729)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCC----CCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 418 ILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSIS----CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 418 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~----~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.+.++.|||+|++.. ..+.+||||.|||.+|+++...
T Consensus 163 ---------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~------------ 203 (255)
T cd07479 163 ---------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK------------ 203 (255)
T ss_pred ---------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC------------
Confidence 225688999996521 1234899999999999987653
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhccccCC
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHP----EWSPAAIRSAIMTTSDSTD 541 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~~sp~~Ik~~L~~TA~~~~ 541 (729)
..|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 204 -~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 -GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 4688999999999999999999999999 7999999999999999763
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-48 Score=409.98 Aligned_cols=286 Identities=30% Similarity=0.292 Sum_probs=190.0
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|+|||||||.+||+|.++.. ..|+..++ +...++...++..+ ....+.|.+|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d---------~~~~~~~g~d~~~~----------~~~~~~D~~g 57 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD---------YKAYLLPGMDKWGG----------FYVIMYDFFS 57 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC---------cCCCccCCcCCCCC----------ccCCCCCccc
Confidence 8999999999999999999975421 01111110 00111111111111 1124678999
Q ss_pred ChhHHHHHhcccCcCCCcccccc-ccceeeccCCCEEEEEEeecCCC-CChHHHHH-------HHHHH--HHcCCcEEEe
Q 004809 187 HGTHTSSTAAGSYVERASYFGYA-IGTALGTAPLARVAMYKALWNEG-SFTSDIIA-------AIDQA--IIDGVDVLSM 255 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~-------ai~~A--~~~gvdVIn~ 255 (729)
|||||||||||+.....+.+|+. ...+.||||+|+|+.+|+|...+ +....++. +++|+ .+++++||||
T Consensus 58 HGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~ 137 (311)
T cd07497 58 HGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISN 137 (311)
T ss_pred cchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEe
Confidence 99999999999864333322211 22358999999999999997543 33333333 33443 3678999999
Q ss_pred ecCCCCCCCC-----CcHHHHHHHH-HHhCCcEEEEecCCCCCCCCC--cCCCCCceEEEcccccCccccEEEEeCCCcE
Q 004809 256 SLGLDGVDLY-----EDPVAIATFA-AIEKNIFVSTSAGNQGPFIGT--LHNGIPWVMTVAAGTMDRELGATLTLGNGNT 327 (729)
Q Consensus 256 SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 327 (729)
|||.....+. .+........ +.++|+++|+||||+|+...+ .+..++++|+|||++.....+... +
T Consensus 138 S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-~----- 211 (311)
T cd07497 138 SWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-F----- 211 (311)
T ss_pred cCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-h-----
Confidence 9997542211 1222222222 248999999999999986443 456789999999975321100000 0
Q ss_pred EEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccccc
Q 004809 328 VTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFP 407 (729)
Q Consensus 328 ~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 407 (729)
T Consensus 212 -------------------------------------------------------------------------------- 211 (311)
T cd07497 212 -------------------------------------------------------------------------------- 211 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccc
Q 004809 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQ 487 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~ 487 (729)
.......+.++.||||||+.+.+ +||||+|||++|+++.+......
T Consensus 212 -------------------------------~~~~~~~~~~~~fSs~Gp~~~g~--~kPdv~ApG~~i~s~~~~~~~~~- 257 (311)
T cd07497 212 -------------------------------GYLPGGSGDVVSWSSRGPSIAGD--PKPDLAAIGAFAWAPGRVLDSGG- 257 (311)
T ss_pred -------------------------------ccccCCCCCccccccCCCCcccC--CCCceeccCcceEeecccCCCCc-
Confidence 00012234689999999998865 99999999999999876432100
Q ss_pred cCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004809 488 TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP------EWSPAAIRSAIMTTS 537 (729)
Q Consensus 488 ~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P------~~sp~~Ik~~L~~TA 537 (729)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 --~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 --ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred --ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011124799999999999999999999999886 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.2e-47 Score=414.49 Aligned_cols=311 Identities=27% Similarity=0.368 Sum_probs=233.3
Q ss_pred CCcCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCC-----ccccccccCCccCcccCCCeeeceeeccccccccCCC
Q 004809 100 AWPVSK-FGKDIIIGVVDTGVWPESESYNDGGMTEIPS-----RWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPT 173 (729)
Q Consensus 100 ~w~~~~-~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 173 (729)
+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+ ...+++.|++..++|.++...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 788877 9999999999999999999999764332111 122222221 123477888888888765321
Q ss_pred CccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecC--CC-CChHHHHHHHHHHHHcCC
Q 004809 174 ITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWN--EG-SFTSDIIAAIDQAIIDGV 250 (729)
Q Consensus 174 ~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~il~ai~~A~~~gv 250 (729)
.....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|++.. .+ +....+++|++++++.|+
T Consensus 75 ----~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~ 145 (346)
T cd07475 75 ----ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGA 145 (346)
T ss_pred ----cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 111457889999999999998654221 123489999999999999973 33 778889999999999999
Q ss_pred cEEEeecCCCCCC-CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------cCCCCCceEEEcccccC
Q 004809 251 DVLSMSLGLDGVD-LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT----------------LHNGIPWVMTVAAGTMD 313 (729)
Q Consensus 251 dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t----------------~~~~~p~vitVgAst~d 313 (729)
+|||||||..... .....+..++.++.++|++||+||||+|..... .+...+++|+||+....
T Consensus 146 ~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~ 225 (346)
T cd07475 146 DVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK 225 (346)
T ss_pred CEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc
Confidence 9999999986532 445677778888999999999999999864322 12234566666654300
Q ss_pred ccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEe
Q 004809 314 RELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFIS 393 (729)
Q Consensus 314 ~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 393 (729)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC
Q 004809 394 DFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD 473 (729)
Q Consensus 394 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~ 473 (729)
........++.||+|||+...+ +||||+|||.
T Consensus 226 ----------------------------------------------~~~~~~~~~~~~S~~G~~~~~~--~~pdi~apG~ 257 (346)
T cd07475 226 ----------------------------------------------VPNPNGGQMSGFSSWGPTPDLD--LKPDITAPGG 257 (346)
T ss_pred ----------------------------------------------cCCCCCCccCCCcCCCCCcccC--cCCeEEeCCC
Confidence 0012344678999999999876 9999999999
Q ss_pred CEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCCCC
Q 004809 474 SILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA----HPEWSPAA----IRSAIMTTSDSTDNTNS 545 (729)
Q Consensus 474 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----~P~~sp~~----Ik~~L~~TA~~~~~~~~ 545 (729)
+|+++... ..|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.....
T Consensus 258 ~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~- 323 (346)
T cd07475 258 NIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE- 323 (346)
T ss_pred CeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC-
Confidence 99998764 47889999999999999999999997 79999876 7889999998532111
Q ss_pred CcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 546 DIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 546 ~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
. ...+..+..+|+|+||+.+|++
T Consensus 324 -----~-~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 324 -----D-TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -----C-CCccCCccccCcchhcHHHhhC
Confidence 0 1455677899999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=9e-47 Score=420.76 Aligned_cols=400 Identities=22% Similarity=0.263 Sum_probs=243.3
Q ss_pred CCCCCcEEEEEcccCCCCCCCCCC-CCCCCCCCccccccccCCccCcccCCCeeeceeeccc-cccc-cCCCCccCCCCC
Q 004809 105 KFGKDIIIGVVDTGVWPESESYND-GGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNK-GLLA-KNPTITIAMNSP 181 (729)
Q Consensus 105 ~~G~gvvVgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-~~~~-~~~~~~~~~~~~ 181 (729)
++|+||+|||||||||+.||+|++ +|.+++...|++....+.. .....+...+.+ ..+. .....+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999995 4678999999998775432 111222222221 1111 111223334456
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-----------CChHHHHHHHHHHHHc--
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-----------SFTSDIIAAIDQAIID-- 248 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~il~ai~~A~~~-- 248 (729)
.|..||||||||||||+..++. .+.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 7899999999999999865422 248999999999999998764 5688999999999864
Q ss_pred ---CCcEEEeecCCCCCC-CCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcCCC-----CC--ceEEEcccccCccc
Q 004809 249 ---GVDVLSMSLGLDGVD-LYEDPVAIATFAAIEK-NIFVSTSAGNQGPFIGTLHNG-----IP--WVMTVAAGTMDREL 316 (729)
Q Consensus 249 ---gvdVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~t~~~~-----~p--~vitVgAst~d~~~ 316 (729)
.++|||||||....+ ...+.+..++..+.++ |++||+||||+|....+.... .. --+.|+... +.+
T Consensus 147 ~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~~ 224 (455)
T cd07478 147 ELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KGF 224 (455)
T ss_pred HhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cce
Confidence 478999999986543 3456777777776665 999999999999754433221 00 012232211 111
Q ss_pred cE------------EEEeCCCcEEEeeeecCCCCCCceeeEEEcCC--cccccccccCCceEEEEccCCCchhhHHHHHH
Q 004809 317 GA------------TLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDE--CLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQ 382 (729)
Q Consensus 317 ~~------------~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~--c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~ 382 (729)
.- .+....|+...... ........+.+.+... |..........|.-.+..+ ..+ .
T Consensus 225 ~~eiW~~~~d~~~v~i~sP~Ge~~~~i~--~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~--------~~~-~ 293 (455)
T cd07478 225 NLEIWGDFPDRFSVSIISPSGESSGRIN--PGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIR--------FKN-I 293 (455)
T ss_pred EEEEecCCCCEEEEEEECCCCCccCccC--cCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEE--------ccC-C
Confidence 10 01111111110000 0000001111111111 1111111122222222211 111 2
Q ss_pred hCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEeccee-----ec-C-CCCCceecccCCC
Q 004809 383 NASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE-----LG-T-KPAPSVASYSSRG 455 (729)
Q Consensus 383 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~-----~~-~-~~~~~~a~FSS~G 455 (729)
..|.+-+.++.... .....+.|+|.-.+...+. .++.. ++..++...... ++ . .....++.|||||
T Consensus 294 ~~GiW~i~~~~~~~-~~g~~~~Wlp~~~~~~~~t----~f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G 366 (455)
T cd07478 294 KPGIWKIRLTGVSI-TDGRFDAWLPSRGLLSENT----RFLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG 366 (455)
T ss_pred CccceEEEEEeccC-CCceEEEEecCcCcCCCCC----EeecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC
Confidence 34556666655411 1111224555443332211 11211 222333333221 11 1 2234699999999
Q ss_pred CCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhC------CCCCHHHH
Q 004809 456 PSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAH------PEWSPAAI 529 (729)
Q Consensus 456 P~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~------P~~sp~~I 529 (729)
|+.+.+ +||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |.|++++|
T Consensus 367 ~~~~~~--~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~i 431 (455)
T cd07478 367 PTRDGR--IKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKI 431 (455)
T ss_pred cCCCCC--cCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHH
Confidence 999876 999999999999999884 479999999999999999999999865 56799999
Q ss_pred HHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCcc
Q 004809 530 RSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAG 565 (729)
Q Consensus 530 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G 565 (729)
|++|++||+++. ...+++.+||||
T Consensus 432 k~~L~~tA~~~~------------~~~~pn~~~GyG 455 (455)
T cd07478 432 KTYLIRGARRRP------------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHhCccCC------------CCCCCCCCCCCC
Confidence 999999999874 233567899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-46 Score=397.83 Aligned_cols=293 Identities=31% Similarity=0.377 Sum_probs=227.8
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
+.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|..... .......+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~-~~~~~~~~ 60 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDY-DGTNPPVP 60 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCccc-ccccCCCC
Confidence 56899999999999999999999999999864110 112233333332110 00111223
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|++...+ .....++++|++|+++|++|||+|
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 345677899999999999998543 23 38999999999999998665 667778999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI---GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
||.... +....+...+.++.++|+++|+||||+|... ...+...+++|+||+.+
T Consensus 132 ~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------- 188 (312)
T cd07489 132 LGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------- 188 (312)
T ss_pred CCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------------
Confidence 997542 3447777778888999999999999998653 23456778899998721
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
+.||++||+.+.. .||||+|||++++++++..
T Consensus 189 -----------------------------------~~~s~~g~~~~~~--~kpdv~ApG~~i~~~~~~~----------- 220 (312)
T cd07489 189 -----------------------------------SYFSSWGPTNELY--LKPDVAAPGGNILSTYPLA----------- 220 (312)
T ss_pred -----------------------------------CCccCCCCCCCCC--cCccEEcCCCCEEEeeeCC-----------
Confidence 4689999998865 9999999999999988753
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAH-PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~-P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
...|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+..... ....+...+|+|+||+.+|
T Consensus 221 ~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~----~~~~~~~~~G~G~vn~~~a 296 (312)
T cd07489 221 GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL----PDLAPVAQQGAGLVNAYKA 296 (312)
T ss_pred CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc----cCCCCHhhcCcceeeHHHH
Confidence 1358999999999999999999999999 9999999999999999987653311100 1135667899999999999
Q ss_pred CCCC
Q 004809 573 LDPG 576 (729)
Q Consensus 573 l~~g 576 (729)
++..
T Consensus 297 ~~~~ 300 (312)
T cd07489 297 LYAT 300 (312)
T ss_pred hcCC
Confidence 9854
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.1e-45 Score=385.99 Aligned_cols=246 Identities=26% Similarity=0.314 Sum_probs=202.5
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
+|..+++|+||+|||||+|||.+||+|.+....+... +.. ...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~-----------~~~ 44 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA-----------AAC 44 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc-----------cCC
Confidence 7999999999999999999999999998642211000 000 002
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeec
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSL 257 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~Sl 257 (729)
...|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||++|++.|++||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 3456789999999999987421 147999999999999997654 4577899999999999999999999
Q ss_pred CCCCC-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 258 GLDGV-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 258 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
|.... ......+..++..|.++|++||+||||+|.....++...|++|+|||+..+
T Consensus 115 G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------- 171 (267)
T cd07476 115 GRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD----------------------- 171 (267)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------
Confidence 97542 234566778888899999999999999998777778889999999985311
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
+.++.||++|+.. .||||+|||.+|+++++. +.
T Consensus 172 -----------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~ 204 (267)
T cd07476 172 -----------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GE 204 (267)
T ss_pred -----------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CC
Confidence 2456899999865 478999999999998874 47
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 004809 497 FNLQSGTSMACPQAAGIAALLRGAHPE----WSPAAIRSAIMTTSDSTDN 542 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~q~~P~----~sp~~Ik~~L~~TA~~~~~ 542 (729)
|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 899999999999999999999999887 9999999999999999864
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-45 Score=387.94 Aligned_cols=287 Identities=37% Similarity=0.514 Sum_probs=216.9
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCC----CCccCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNP----TITIAMNSPR 182 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~----~~~~~~~~~~ 182 (729)
|+||+|||||+||+++||+|.+.. +.+++++..++|......... ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998541 133444555544432110000 0000112345
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCC
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDG 261 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~ 261 (729)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68899999999999985432 2248999999999999998544 78889999999999999999999999754
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCC
Q 004809 262 VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL--HNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSS 339 (729)
Q Consensus 262 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~--~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~ 339 (729)
.. ..+.+..++..+.++|+++|+||||+|...... +...+++|+||++....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------------------- 185 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------------------- 185 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-------------------------
Confidence 32 456777888899999999999999998765443 56789999999864110
Q ss_pred CceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHH
Q 004809 340 LIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419 (729)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 419 (729)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCcEEEEEecceeecCCCCCceecccC-CCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCce
Q 004809 420 KDYIKIENNATATIQFQKTELGTKPAPSVASYSS-RGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFN 498 (729)
Q Consensus 420 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS-~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 498 (729)
.........|++ +|+....+ +||||+|||++|++++... ...|.
T Consensus 186 ----------------------~~~~~~~~~~~s~~~~~~~~~--~kpdv~apG~~i~~~~~~~-----------~~~~~ 230 (295)
T cd07474 186 ----------------------VAEADTVGPSSSRGPPTSDSA--IKPDIVAPGVDIMSTAPGS-----------GTGYA 230 (295)
T ss_pred ----------------------cCCCCceeccCCCCCCCCCCC--cCCCEECCcCceEeeccCC-----------CCceE
Confidence 001112334444 45555544 9999999999999998753 25789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 499 LQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 499 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
.++|||||||+|||++|||+|++|+|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 231 ~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~---------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 231 RMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred EeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC---------CCcCChhccCcceeccccC
Confidence 9999999999999999999999999999999999999999876533 2222457899999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.2e-44 Score=383.69 Aligned_cols=267 Identities=24% Similarity=0.306 Sum_probs=188.9
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCC-CCCCccccccccCCccCcccCCCeeeceeecccccccc--------C----CCC
Q 004809 108 KDIIIGVVDTGVWPESESYNDGGMT-EIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAK--------N----PTI 174 (729)
Q Consensus 108 ~gvvVgVIDtGid~~Hp~f~~~g~~-~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~--------~----~~~ 174 (729)
|+|+|||||||||++||+|++.-.. +.....++..+.+.+|.. + +..++|...+... + ...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 6899999999999999999874110 000001111111111110 1 2233333211000 0 000
Q ss_pred ccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEE
Q 004809 175 TIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLS 254 (729)
Q Consensus 175 ~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn 254 (729)
+.+...+.+..+|||||||||||...++ .| +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1122345578999999999999975432 22 389999999999999865557788999999999999999999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC---c--------CCCCCceEEEcccccCccccEEEEeC
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT---L--------HNGIPWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t---~--------~~~~p~vitVgAst~d~~~~~~~~l~ 323 (729)
||||..... ....+..++..|.++|+++|+||||+|..... . +...+.+|+||++....
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999964322 23456677778889999999999999854221 1 12345677777643211
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCC
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNL 483 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~ 483 (729)
....++.||++|+ .+|||.|||++|+++.+.
T Consensus 217 ----------------------------------------~~~~~~~~Sn~G~-------~~vdi~APG~~i~s~~~~-- 247 (291)
T cd07483 217 ----------------------------------------ENNLVANFSNYGK-------KNVDVFAPGERIYSTTPD-- 247 (291)
T ss_pred ----------------------------------------CcccccccCCCCC-------CceEEEeCCCCeEeccCc--
Confidence 1124688999997 357999999999998764
Q ss_pred CccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 484 AVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 484 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 248 -----------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 -----------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -----------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-44 Score=371.23 Aligned_cols=234 Identities=27% Similarity=0.362 Sum_probs=190.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChh
Q 004809 110 IIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGT 189 (729)
Q Consensus 110 vvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 189 (729)
|+|||||||||.+||+|.++- +..+++.. ....|..+|||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~-------------~~~~~~~~HGT 40 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG-------------PGAPAPSAHGT 40 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC-------------CCCCCCCCCHH
Confidence 689999999999999997541 11111110 12456789999
Q ss_pred HHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC----CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 004809 190 HTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG----SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265 (729)
Q Consensus 190 HVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~ 265 (729)
||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 41 ~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~---- 105 (239)
T cd05561 41 AVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP---- 105 (239)
T ss_pred HHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----
Confidence 9999999984321 5999999999999998642 67788999999999999999999999642
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceee
Q 004809 266 EDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFP 344 (729)
Q Consensus 266 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~ 344 (729)
...+..++..+.++|++||+||||+|+.. ..+++..+++|+|++++.
T Consensus 106 ~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------------------- 153 (239)
T cd05561 106 NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------------------- 153 (239)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------------------
Confidence 34667777789999999999999999753 456777889999988431
Q ss_pred EEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHh
Q 004809 345 IVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIK 424 (729)
Q Consensus 345 lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 424 (729)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeecccc
Q 004809 425 IENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTS 504 (729)
Q Consensus 425 ~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 504 (729)
.+.++.||++|+.. ||.|||++|+++.+. +.|..++|||
T Consensus 154 --------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGTS 192 (239)
T cd05561 154 --------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGTS 192 (239)
T ss_pred --------------------CCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCHH
Confidence 12457899999854 999999999997653 4799999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCcc
Q 004809 505 MACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAG 565 (729)
Q Consensus 505 MAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G 565 (729)
||||||||++|||+|++| +++++||++|++||+++.. +..+..||||
T Consensus 193 ~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-------------~~~d~~~G~G 239 (239)
T cd05561 193 FAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-------------PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-------------CCcCCCcCCC
Confidence 999999999999999999 9999999999999998743 3456689988
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.5e-43 Score=370.97 Aligned_cols=247 Identities=31% Similarity=0.367 Sum_probs=193.9
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|||||+||+++||+|.+. |+..... ++...+.+.+. ......+.|..+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~--------~~~~~~~~d~~~ 53 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP--------VGNTPLPYDDNG 53 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC--------CCCCCCCCCCCC
Confidence 89999999999999999999864 1111000 00000001000 001134567889
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH------------cCCcEEE
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII------------DGVDVLS 254 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~------------~gvdVIn 254 (729)
|||||||||+|..... ...||||+|+|+.+|++...++...+++++++++++ .|++|||
T Consensus 54 HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin 124 (264)
T cd07481 54 HGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVIN 124 (264)
T ss_pred chhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEE
Confidence 9999999999874322 127999999999999998877888899999999985 7899999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
||||.... ....+..++..+.++|++||+||||+|.... ..+...+++|+||+.+.
T Consensus 125 ~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------------- 183 (264)
T cd07481 125 NSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------------- 183 (264)
T ss_pred eCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------------------
Confidence 99997543 2445555666778899999999999986543 25677899999998532
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSK 491 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~ 491 (729)
...++.||++||....+ +||||+|||.+|+++++.
T Consensus 184 ---------------------------------~~~~~~~S~~g~~~~~~--~~~dv~ApG~~i~s~~~~---------- 218 (264)
T cd07481 184 ---------------------------------NDVLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG---------- 218 (264)
T ss_pred ---------------------------------CCCCccccCCCCCCCCC--cCceEEECCCCeEEecCC----------
Confidence 12567899999998865 999999999999999874
Q ss_pred CCCCCceeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004809 492 LSFSNFNLQSGTSMACPQAAGIAALLRGAHPE--WSPAAIRSAIMTTSD 538 (729)
Q Consensus 492 ~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~--~sp~~Ik~~L~~TA~ 538 (729)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 ---~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 ---GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ---CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 47889999999999999999999999999 999999999999985
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-43 Score=370.54 Aligned_cols=243 Identities=32% Similarity=0.387 Sum_probs=194.9
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+||||||||+++||+|..... .++.++++.++|.+... ....|..+||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~----------~~~~~~~~HG 50 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN----------NTNYTDDDHG 50 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC----------CCCCCCCCch
Confidence 79999999999999999953210 13456777776655421 1135788999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC---CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG---SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~ 265 (729)
|||||+|+|+.. +.+.||||+|+|+.+|+..... .....++.|+++|.+.|++|||||||.......
T Consensus 51 T~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~ 120 (261)
T cd07493 51 TAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNP 120 (261)
T ss_pred hhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCc
Confidence 999999999742 2248999999999999875432 345678899999999999999999997543211
Q ss_pred ------------CcHHHHHHHHHHhCCcEEEEecCCCCCC---CCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEe
Q 004809 266 ------------EDPVAIATFAAIEKNIFVSTSAGNQGPF---IGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTG 330 (729)
Q Consensus 266 ------------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g 330 (729)
...+..++..+.++|+++|+||||+|.. ....+...+++|+|||...
T Consensus 121 ~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~------------------ 182 (261)
T cd07493 121 TYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA------------------ 182 (261)
T ss_pred ccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc------------------
Confidence 2356677788899999999999999976 3456677899999998431
Q ss_pred eeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEE
Q 004809 331 LSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVF 410 (729)
Q Consensus 331 ~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 410 (729)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCC
Q 004809 411 MNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNS 490 (729)
Q Consensus 411 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~ 490 (729)
...++.||++||..+.+ +||||+|||.+|++....
T Consensus 183 ----------------------------------~~~~~~~S~~G~~~~~~--~~pdi~a~G~~~~~~~~~--------- 217 (261)
T cd07493 183 ----------------------------------NGNKASFSSIGPTADGR--LKPDVMALGTGIYVINGD--------- 217 (261)
T ss_pred ----------------------------------CCCCCccCCcCCCCCCC--cCCceEecCCCeEEEcCC---------
Confidence 12567899999998765 999999999999985442
Q ss_pred CCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 491 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
..|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 218 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
No 15
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=4e-43 Score=369.52 Aligned_cols=262 Identities=30% Similarity=0.310 Sum_probs=200.9
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
+|..+++|+||+|+|||||||++||+|.+..... +...+...+...... .....
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~~~~ 55 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------------------GYDPAVNGYNFVPNV-GDIDN 55 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------------------CcccccCCccccccc-CCcCC
Confidence 7999999999999999999999999999751100 000000010000000 00112
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecC
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLG 258 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG 258 (729)
...|..+|||||||||+|+.......-|++ .+.|+||+|+|+.+|++...+ +....++++|++|++.|++|||||||
T Consensus 56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g 133 (273)
T cd07485 56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWG 133 (273)
T ss_pred CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCC
Confidence 355778999999999999754322221221 236799999999999998765 77888999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 259 LDGVDLYEDPVAIATFAAIEK-------NIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 259 ~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
......+...+..++..+.++ |++||+||||+|......++..+++|+||+++.+
T Consensus 134 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------ 195 (273)
T cd07485 134 GTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------ 195 (273)
T ss_pred CCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------------------
Confidence 865444566777777888888 9999999999998877668888999999985421
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC-CEEeecCCCCCccccCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD-SILAAWPSNLAVSQTNS 490 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~-~I~sa~~~~~~~~~~~~ 490 (729)
+.++.||++|+.. ||.|||. .|+++++....
T Consensus 196 ----------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~------ 227 (273)
T cd07485 196 ----------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG------ 227 (273)
T ss_pred ----------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC------
Confidence 2457899999865 9999999 89888764311
Q ss_pred CCCCCCceeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004809 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPE-WSPAAIRSAIMTT 536 (729)
Q Consensus 491 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-~sp~~Ik~~L~~T 536 (729)
.....|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 228 -~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 -DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11357899999999999999999999999999 9999999999986
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-42 Score=362.76 Aligned_cols=256 Identities=33% Similarity=0.427 Sum_probs=203.6
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|..+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~--------~~~~~~~d~~~ 45 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV--------NGRTTPYDDNG 45 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc--------cCCCCCCCCCC
Confidence 89999999999999999999875210 0 0010000 01134567789
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc----CCcEEEeecCCCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID----GVDVLSMSLGLDG 261 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~----gvdVIn~SlG~~~ 261 (729)
|||||||+|+|..... .+.+.|+||+|+|+.+|+++..+ ....++++||+++++. +++|||+|||...
T Consensus 46 HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~ 118 (264)
T cd07487 46 HGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPP 118 (264)
T ss_pred chHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCC
Confidence 9999999999985432 12248999999999999998776 6788999999999998 9999999999765
Q ss_pred C-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCC
Q 004809 262 V-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG--TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNS 338 (729)
Q Consensus 262 ~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~ 338 (729)
. ......+..++.++.++|++||+||||++.... ..+...+++|+||+...+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------- 175 (264)
T cd07487 119 DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------- 175 (264)
T ss_pred CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------------
Confidence 3 456778888888999999999999999997765 55677899999999653321
Q ss_pred CCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHH
Q 004809 339 SLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDI 418 (729)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 418 (729)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCce
Q 004809 419 LKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFN 498 (729)
Q Consensus 419 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 498 (729)
....++.||++||+.+.+ +||||+|||.+|+++.+..... .......|.
T Consensus 176 -------------------------~~~~~~~~s~~G~~~~~~--~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~ 224 (264)
T cd07487 176 -------------------------HDDGISYFSSRGPTGDGR--IKPDVVAPGENIVSCRSPGGNP----GAGVGSGYF 224 (264)
T ss_pred -------------------------CCccccccccCCCCCCCC--cCCCEEccccceEecccccccc----CCCCCCceE
Confidence 002468899999999876 9999999999999986543110 112236789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 499 LQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 499 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
.++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
No 17
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2e-42 Score=374.72 Aligned_cols=220 Identities=26% Similarity=0.310 Sum_probs=166.1
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC---CChHHHHHHHHHHHHcCCcEEEeecC
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG---SFTSDIIAAIDQAIIDGVDVLSMSLG 258 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~il~ai~~A~~~gvdVIn~SlG 258 (729)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 367899999999999985322 2248999999999999986542 23457999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcCC---CCCceEEEcccccCccccEEEEeCCCcEEEeeeec
Q 004809 259 LDGVDLYEDPVAIATFA-AIEKNIFVSTSAGNQGPFIGTLHN---GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLY 334 (729)
Q Consensus 259 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~t~~~---~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~ 334 (729)
..........+...+.+ +.++||++|+||||+|+...++.. ..+.+|+|||+...........+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------------ 321 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------------ 321 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc------------
Confidence 76432222234444444 447899999999999987766542 46899999996422111000000
Q ss_pred CCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechh
Q 004809 335 PGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSK 414 (729)
Q Consensus 335 ~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~ 414 (729)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCC
Q 004809 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSF 494 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 494 (729)
..+..+.++.||||||+.+++ +||||+|||+.|.+.-... .
T Consensus 322 --------------------------~~~~~~~~~~fSSrGP~~dG~--~~pdI~APG~~I~s~p~~~-----------~ 362 (412)
T cd04857 322 --------------------------REKLPGNQYTWSSRGPTADGA--LGVSISAPGGAIASVPNWT-----------L 362 (412)
T ss_pred --------------------------ccccCCccccccccCCcccCC--cCceEEeCCCcEEEcccCC-----------C
Confidence 011234689999999999987 9999999999998752111 1
Q ss_pred CCceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 004809 495 SNFNLQSGTSMACPQAAGIAALLRG----AHPEWSPAAIRSAIMTTSDST 540 (729)
Q Consensus 495 ~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Ik~~L~~TA~~~ 540 (729)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 4689999999999999999999975 579999999999999999863
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=7.5e-42 Score=356.42 Aligned_cols=232 Identities=32% Similarity=0.426 Sum_probs=193.4
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
.|..+++|+||+|+|||+||+++||+|.++ +...+.+... .
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------~ 57 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------D 57 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC------------C
Confidence 667789999999999999999999999764 1111222211 1
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc-----CCcEE
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID-----GVDVL 253 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~-----gvdVI 253 (729)
...|..+|||||||||+|+. .||||+|+|+.+|+++..+ ...++++++|+++++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 25678899999999999862 6999999999999998775 6778899999999987 48999
Q ss_pred EeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 254 SMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 254 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
|+|||... ...+..++..+.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 124 n~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------- 180 (255)
T cd04077 124 NMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------- 180 (255)
T ss_pred EeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------
Confidence 99999754 45666777789999999999999999765 4556788999999985421
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
...+.||++||.. ||+|||.+|+++....
T Consensus 181 ---------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~---------- 209 (255)
T cd04077 181 ---------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS---------- 209 (255)
T ss_pred ---------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC----------
Confidence 1367899999875 8999999999987642
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDS 539 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~ 539 (729)
...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 210 -~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 -DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2578999999999999999999999999999999999999999974
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-42 Score=365.24 Aligned_cols=262 Identities=27% Similarity=0.252 Sum_probs=185.5
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChhH
Q 004809 111 IIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTH 190 (729)
Q Consensus 111 vVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 190 (729)
+|||||||||.+||+|.+. +.....+... .....|..|||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-----------~~~~~d~~gHGT~ 43 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-----------PGWTADDLGHGTA 43 (291)
T ss_pred EEEEecCCCCCCChhhhhh---------------------------hccccccccC-----------CCCcCCCCCChHH
Confidence 7999999999999999864 1111111100 0115688999999
Q ss_pred HHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-----CChHHHHHHHHHHHHcC---CcEEEeecCCCCC
Q 004809 191 TSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-----SFTSDIIAAIDQAIIDG---VDVLSMSLGLDGV 262 (729)
Q Consensus 191 VAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~il~ai~~A~~~g---vdVIn~SlG~~~~ 262 (729)
|||||++....+ ....|+||+|+|+.+|++...| .+..++++||+|+++.+ ++|||||||....
T Consensus 44 vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~ 115 (291)
T cd04847 44 VAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLP 115 (291)
T ss_pred HHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCC
Confidence 999999764321 1237999999999999998763 45678999999999753 5999999998653
Q ss_pred CCC--CcHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------cCCCCCceEEEcccccCccccEEEEeCCCcE
Q 004809 263 DLY--EDPVAIATF-AAIEKNIFVSTSAGNQGPFIGT------------LHNGIPWVMTVAAGTMDRELGATLTLGNGNT 327 (729)
Q Consensus 263 ~~~--~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~t------------~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 327 (729)
... ...+..++. .+.++|++||+||||+|..... .+..++++|+|||.+.+......
T Consensus 116 ~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~-------- 187 (291)
T cd04847 116 IDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR-------- 187 (291)
T ss_pred ccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc--------
Confidence 221 123444443 3568999999999999976543 24567899999997654321000
Q ss_pred EEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccccc
Q 004809 328 VTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFP 407 (729)
Q Consensus 328 ~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 407 (729)
+.+
T Consensus 188 ----s~~------------------------------------------------------------------------- 190 (291)
T cd04847 188 ----ARY------------------------------------------------------------------------- 190 (291)
T ss_pred ----ccc-------------------------------------------------------------------------
Confidence 000
Q ss_pred EEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCc--
Q 004809 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAV-- 485 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~-- 485 (729)
+.......+.||||||..... +||||+|||++|.+........
T Consensus 191 ---------------------------------~~~~~~~~~~fs~~Gp~~~~~--~KPDl~apG~~i~~~~~~~~~~~~ 235 (291)
T cd04847 191 ---------------------------------SAVGPAPAGATTSSGPGSPGP--IKPDVVAFGGNLAYDPSGNAADGD 235 (291)
T ss_pred ---------------------------------cccccccCCCccccCCCCCCC--cCCcEEeeCCceeecCCCCCccCc
Confidence 000011223499999999876 9999999999998864421100
Q ss_pred ---cccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 486 ---SQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 486 ---~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 236 LSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001112367999999999999999999999999999999999999999984
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=4e-41 Score=352.01 Aligned_cols=241 Identities=34% Similarity=0.440 Sum_probs=200.0
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.+..
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~~--------- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDND--------- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCCC---------
Confidence 35689988 999999999999999999998432 222223332211
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~ 255 (729)
..+.|..+|||||||||++...... | +.|+||+|+|+.+|+++..+ +...+++++|+++++.|++|||+
T Consensus 62 --~~~~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~ 131 (260)
T cd07484 62 --SDAMDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINL 131 (260)
T ss_pred --CCCCCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 2356788999999999998743321 2 47999999999999998765 77889999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecC
Q 004809 256 SLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYP 335 (729)
Q Consensus 256 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~ 335 (729)
|||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 132 S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------- 186 (260)
T cd07484 132 SLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD---------------------- 186 (260)
T ss_pred cCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC----------------------
Confidence 999753 4566777777888999999999999998888888999999999985421
Q ss_pred CCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhh
Q 004809 336 GNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKT 415 (729)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 415 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCC
Q 004809 416 GDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS 495 (729)
Q Consensus 416 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 495 (729)
+..+.||++|+.. |+.|||.+|++.... .
T Consensus 187 ------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~-------------~ 215 (260)
T cd07484 187 ------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD-------------G 215 (260)
T ss_pred ------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------C
Confidence 2456889999754 999999999988764 4
Q ss_pred CceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004809 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDST 540 (729)
Q Consensus 496 ~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~ 540 (729)
.|..++|||||||+|||++|||++++| |++.+||++|++||+++
T Consensus 216 ~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 789999999999999999999999999 99999999999999875
No 21
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-41 Score=360.11 Aligned_cols=252 Identities=26% Similarity=0.335 Sum_probs=182.3
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|+++++|+||+|+||||||+..|| |...++ .+ ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc---------------ee----ecCCC----------
Confidence 3679999999999999999999999998 764321 00 00 00000
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEee
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
......|..|||||||+++ .||||+|+|+.+|++.. ..+++++||+||++.|++|||||
T Consensus 53 ~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~S 111 (298)
T cd07494 53 ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNS 111 (298)
T ss_pred CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEee
Confidence 0123567889999998865 59999999999999864 56779999999999999999999
Q ss_pred cCCCCCCC----------CCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCc
Q 004809 257 LGLDGVDL----------YEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGN 326 (729)
Q Consensus 257 lG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~ 326 (729)
||...... ....+..++..|.++|++||+||||++. .+++..|++|+|||++.+.. +.
T Consensus 112 lG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~ 179 (298)
T cd07494 112 WGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GA 179 (298)
T ss_pred cccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Cc
Confidence 99753211 1335777778889999999999999974 46889999999999754321 00
Q ss_pred EEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccc
Q 004809 327 TVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSF 406 (729)
Q Consensus 327 ~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 406 (729)
.
T Consensus 180 ~------------------------------------------------------------------------------- 180 (298)
T cd07494 180 R------------------------------------------------------------------------------- 180 (298)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcE----------------Ee
Q 004809 407 PAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDV----------------MA 470 (729)
Q Consensus 407 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI----------------~A 470 (729)
......+.|+|+ . .++..|||+ +|
T Consensus 181 ------------------------------------~~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 181 ------------------------------------RASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred ------------------------------------cccccccCcccc--c--CCCCccCccccccCcCCcccccccccC
Confidence 000001112221 1 112256666 47
Q ss_pred cCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 004809 471 PGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDN 542 (729)
Q Consensus 471 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~ 542 (729)
||..|.+++..... .......|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 221 PG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 221 PGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 99998766532100 01113579999999999999999999999999999999999999999997743
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-41 Score=350.97 Aligned_cols=253 Identities=34% Similarity=0.361 Sum_probs=186.7
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+|||||+|||++||+|.+. +...+.|.... ........|..+||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~-------~~~~~~~~d~~~HG 46 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR-------RISATEVFDAGGHG 46 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC-------CCCCCCCCCCCCcH
Confidence 799999999999999999764 11111221110 01112355778999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCcH
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDP 268 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~ 268 (729)
|||||||+|+.. .+...||||+|+|+.+|++...++..++++++|+++++.+++|||||||..... .+.
T Consensus 47 T~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~ 115 (254)
T cd07490 47 THVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDP 115 (254)
T ss_pred HHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcH
Confidence 999999999854 122479999999999999987778889999999999999999999999975432 455
Q ss_pred HHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEE
Q 004809 269 VAIATFAAIE-KNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVF 347 (729)
Q Consensus 269 ~~~a~~~a~~-~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~ 347 (729)
+...+....+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 116 ~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s--------------------------- 168 (254)
T cd07490 116 LEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS--------------------------- 168 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc---------------------------
Confidence 5555444443 599999999999988777788899999999975432100000
Q ss_pred cCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcC
Q 004809 348 MDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIEN 427 (729)
Q Consensus 348 ~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 427 (729)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchh
Q 004809 428 NATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507 (729)
Q Consensus 428 ~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 507 (729)
..........+++|... ....||||.|||.+|+++.... .....|..++||||||
T Consensus 169 ---------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~Aa 223 (254)
T cd07490 169 ---------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAA 223 (254)
T ss_pred ---------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHH
Confidence 00000112223333322 2348999999999999865321 1135799999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 508 PQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 508 P~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
|+|||++|||+|++|+|++.+||++|++||+
T Consensus 224 P~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 224 PHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-41 Score=355.48 Aligned_cols=207 Identities=29% Similarity=0.367 Sum_probs=167.2
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHH----------HcC
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAI----------IDG 249 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~----------~~g 249 (729)
...+..+|||||||||||...+ ..| +.||||+|+|+.+|+++..+.+.+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---~~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---GVG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---CCC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 3557789999999999998542 223 3799999999999999887778899999999998 457
Q ss_pred CcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 250 VDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 250 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
++|||||||..... ...+..++..+.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 99999999975421 45677778888999999999999999775 5667788999999985421
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCcc--
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVS-- 486 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~-- 486 (729)
+.++.||++||.. ||.|||++|.+.........
T Consensus 201 -------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~ 235 (285)
T cd07496 201 -------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSN 235 (285)
T ss_pred -------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCcccccc
Confidence 2467899999865 99999999998876432110
Q ss_pred ccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 487 QTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 487 ~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 236 ~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 236 TGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 00111123578999999999999999999999999999999999999986
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=4.6e-41 Score=357.72 Aligned_cols=277 Identities=29% Similarity=0.321 Sum_probs=200.8
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCC
Q 004809 103 VSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPR 182 (729)
Q Consensus 103 ~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 182 (729)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.. ...
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~--------------~~~ 51 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD--------------TKD 51 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC--------------CCC
Confidence 57899999999999999999999986421 0000 13334443332221 122
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
|..+|||||||||+|+....... ..+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||+|||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 78999999999999986543211 1248999999999999998765 5666788999999999999999999986
Q ss_pred CCCCCCcHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecC
Q 004809 261 GVDLYEDPVAIATFAAI-E-KNIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYP 335 (729)
Q Consensus 261 ~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~ 335 (729)
.... ......++.++. + +|++||+||||+|.... ..+...+++|+|||++.+.......
T Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~--------------- 190 (293)
T cd04842 127 VNNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEG--------------- 190 (293)
T ss_pred Cccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccccc---------------
Confidence 5321 223333333333 3 79999999999997654 5667889999999976543210000
Q ss_pred CCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhh
Q 004809 336 GNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKT 415 (729)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 415 (729)
|.
T Consensus 191 ---------------~~--------------------------------------------------------------- 192 (293)
T cd04842 191 ---------------GL--------------------------------------------------------------- 192 (293)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCC
Q 004809 416 GDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS 495 (729)
Q Consensus 416 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 495 (729)
+ .......++.||++||....+ +||||+|||++|++++..... .......
T Consensus 193 ------~------------------~~~~~~~~~~~S~~G~~~~~~--~~pdv~ApG~~i~~~~~~~~~----~~~~~~~ 242 (293)
T cd04842 193 ------G------------------QSDNSDTVASFSSRGPTYDGR--IKPDLVAPGTGILSARSGGGG----IGDTSDS 242 (293)
T ss_pred ------c------------------ccCCCCccccccCcCCCCCCC--cCCCEECCCCCeEeccCCCCC----CCCCChh
Confidence 0 012234689999999998876 999999999999999754200 0111235
Q ss_pred CceeeccccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004809 496 NFNLQSGTSMACPQAAGIAALLRGAH-----P---EWSPAAIRSAIMTTSD 538 (729)
Q Consensus 496 ~y~~~sGTSMAaP~VAG~aALl~q~~-----P---~~sp~~Ik~~L~~TA~ 538 (729)
.|..++|||||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 243 ~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 243 AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred heeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 78999999999999999999999985 4 6677899999999985
No 25
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=354.41 Aligned_cols=264 Identities=27% Similarity=0.349 Sum_probs=183.4
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCC
Q 004809 102 PVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSP 181 (729)
Q Consensus 102 ~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 181 (729)
..+++|+||+|||||+|||.+||+|.+.. +...+|.+. ...
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~------------~~~ 42 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG------------EDV 42 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC------------CCC
Confidence 35789999999999999999999998641 111122211 124
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
.|..+|||||||||+|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||+|||..
T Consensus 43 ~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 43 QDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred CCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 67889999999999997543 1236999999999999997654 7777899999999999999999999975
Q ss_pred CCCC----------CCcHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcC-----CCCCceEEEccc
Q 004809 261 GVDL----------YEDPVAIATFAA---------------IEKNIFVSTSAGNQGPFIGTLH-----NGIPWVMTVAAG 310 (729)
Q Consensus 261 ~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~t~~-----~~~p~vitVgAs 310 (729)
.... ....+......+ .++|++||+||||+|....... ...+++++|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V 193 (297)
T cd07480 114 FPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAV 193 (297)
T ss_pred CcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEE
Confidence 4111 111222222223 6789999999999986543221 112333444332
Q ss_pred ccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEE
Q 004809 311 TMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGV 390 (729)
Q Consensus 311 t~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i 390 (729)
...
T Consensus 194 ~~~----------------------------------------------------------------------------- 196 (297)
T cd07480 194 GAL----------------------------------------------------------------------------- 196 (297)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred EEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEe
Q 004809 391 FISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMA 470 (729)
Q Consensus 391 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~A 470 (729)
.....|+++.+... .||||+|
T Consensus 197 -------------------------------------------------------~~~~~~~~~~~~~~----~~~dv~A 217 (297)
T cd07480 197 -------------------------------------------------------GRTGNFSAVANFSN----GEVDIAA 217 (297)
T ss_pred -------------------------------------------------------CCCCCccccCCCCC----CceEEEe
Confidence 01122333332211 5789999
Q ss_pred cCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccC
Q 004809 471 PGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDI 550 (729)
Q Consensus 471 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~ 550 (729)
||.+|+++++. ..|..++|||||||+|||++|||+|++|++++.+++.+|+.......... .
T Consensus 218 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-~---- 279 (297)
T cd07480 218 PGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-F---- 279 (297)
T ss_pred CCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-C----
Confidence 99999998774 47999999999999999999999999999999888888774322211000 0
Q ss_pred CCCCCCCCCCCCCccccCcc
Q 004809 551 GDDNKPATPIAMGAGHINPD 570 (729)
Q Consensus 551 ~~~~~~~~~~~~G~G~vn~~ 570 (729)
.....+.++|+|++++.
T Consensus 280 ---~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 280 ---APGLDLPDRGVGLGLAP 296 (297)
T ss_pred ---CCCCChhhcCCceeecC
Confidence 12235668999999875
No 26
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-40 Score=344.23 Aligned_cols=249 Identities=32% Similarity=0.413 Sum_probs=190.5
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCCCCCccccc---cccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCC
Q 004809 108 KDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGE---CESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDA 184 (729)
Q Consensus 108 ~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~ 184 (729)
+||+|||||||||++||+|.++ .|... +..+.+.. ++..+... .+++.. ....++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~-----~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD---GNGYVDDI----YGWNFV-----NNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC---CCCcccCC----Cccccc-----CCCCCCCCC
Confidence 6899999999999999999975 23211 11111100 00000000 011110 122356788
Q ss_pred CCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 004809 185 NGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVD 263 (729)
Q Consensus 185 ~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~ 263 (729)
.+|||||||||+|+...... +.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||....
T Consensus 63 ~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~- 133 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP- 133 (259)
T ss_pred CCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-
Confidence 99999999999998543322 37999999999999998776 888899999999999999999999997532
Q ss_pred CCCcHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCC--CCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCC
Q 004809 264 LYEDPVAIATFAAIEKNIFVSTSAGNQGPFI---GTLHN--GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNS 338 (729)
Q Consensus 264 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~t~~~--~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~ 338 (729)
...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 134 --~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~------------------------- 186 (259)
T cd07473 134 --SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN------------------------- 186 (259)
T ss_pred --CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-------------------------
Confidence 56777888889999999999999998752 23333 45789999885421
Q ss_pred CCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHH
Q 004809 339 SLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDI 418 (729)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 418 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCce
Q 004809 419 LKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFN 498 (729)
Q Consensus 419 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 498 (729)
+.++.||++||. +||+.|||.++++.... ..|.
T Consensus 187 ---------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~~ 219 (259)
T cd07473 187 ---------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGYG 219 (259)
T ss_pred ---------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcEE
Confidence 245669999984 57999999999996653 5789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 499 LQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 499 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
.++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 220 ~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 220 YMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999985
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-40 Score=340.95 Aligned_cols=239 Identities=29% Similarity=0.357 Sum_probs=187.6
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChh
Q 004809 110 IIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGT 189 (729)
Q Consensus 110 vvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 189 (729)
|+|||||+||+++||+|.+.. +++..+.+... .....|..+|||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-----------~~~~~~~~~HGT 44 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-----------NDPTSDIDGHGT 44 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-----------CCCCCCCCCCHH
Confidence 689999999999999998630 01111111110 013567889999
Q ss_pred HHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCC-CCCCc
Q 004809 190 HTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGV-DLYED 267 (729)
Q Consensus 190 HVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~-~~~~~ 267 (729)
||||||+|+..+.. .+.|+||+|+|+.+|++...+ +...+++++++++++.+++|||||||.... ..+..
T Consensus 45 ~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~ 116 (242)
T cd07498 45 ACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISS 116 (242)
T ss_pred HHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHH
Confidence 99999999853221 247999999999999998765 678899999999999999999999997543 23355
Q ss_pred HHHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEE
Q 004809 268 PVAIATFAAIE-KNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIV 346 (729)
Q Consensus 268 ~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv 346 (729)
.+..++..+.+ +|+++|+||||+|......++..+++|+||+.+.+
T Consensus 117 ~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------------- 163 (242)
T cd07498 117 AIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN--------------------------------- 163 (242)
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC---------------------------------
Confidence 66666777778 99999999999998776678889999999985421
Q ss_pred EcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhc
Q 004809 347 FMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIE 426 (729)
Q Consensus 347 ~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 426 (729)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccch
Q 004809 427 NNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506 (729)
Q Consensus 427 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMA 506 (729)
+.++.||++||.. |++|||.++.......... .......|..++|||||
T Consensus 164 -------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~A 212 (242)
T cd07498 164 -------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFA 212 (242)
T ss_pred -------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHH
Confidence 2467899999865 9999999998875442111 11123578899999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 507 aP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
||+|||++|||+|++|+|++++||++|++|
T Consensus 213 ap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-40 Score=347.49 Aligned_cols=244 Identities=23% Similarity=0.229 Sum_probs=177.4
Q ss_pred CCCCcCC-CCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 98 SGAWPVS-KFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 98 ~~~w~~~-~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
..+|+.. ..|+||+|+|||+|||.+||+|.++-.. . ..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~----~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------L----ISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------c----cCC----------
Confidence 4578774 4599999999999999999999865110 0 000
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH----cCCcE
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII----DGVDV 252 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~----~gvdV 252 (729)
..+.|..+|||||||||||.. +.+| +.||||+|+|+.+|++. .++++++|++|++ .++.+
T Consensus 45 --~~~~d~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~ 108 (277)
T cd04843 45 --LTDQADSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVIL 108 (277)
T ss_pred --CCCCCCCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEE
Confidence 014577899999999999862 2223 37999999999999975 3456677777776 34678
Q ss_pred EEeecCCCCCC------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc------------C-CCCCceEEEcccccC
Q 004809 253 LSMSLGLDGVD------LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL------------H-NGIPWVMTVAAGTMD 313 (729)
Q Consensus 253 In~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~------------~-~~~p~vitVgAst~d 313 (729)
||||||..... .....+..++.+|.++|+++|+||||++...... + ...|++|+|||++.+
T Consensus 109 in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~ 188 (277)
T cd04843 109 LEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST 188 (277)
T ss_pred EEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC
Confidence 99999975422 1233455677788899999999999998642111 1 123578888875421
Q ss_pred ccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEe
Q 004809 314 RELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFIS 393 (729)
Q Consensus 314 ~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 393 (729)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (277)
T cd04843 189 T------------------------------------------------------------------------------- 189 (277)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC
Q 004809 394 DFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD 473 (729)
Q Consensus 394 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~ 473 (729)
...++.||++||.. ||.|||+
T Consensus 190 ---------------------------------------------------~~~~~~fSn~G~~v--------di~APG~ 210 (277)
T cd04843 190 ---------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGE 210 (277)
T ss_pred ---------------------------------------------------CCccccccCCCCcc--------ceEcCCC
Confidence 01368999999965 9999999
Q ss_pred CEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 004809 474 SILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRG----A-HPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 474 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~-~P~~sp~~Ik~~L~~TA~ 538 (729)
+|++++...... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 211 ~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 211 NVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999998754211 0011123457899999999999999999975 3 499999999999999974
No 29
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=346.84 Aligned_cols=289 Identities=26% Similarity=0.402 Sum_probs=232.8
Q ss_pred eEEEec---ceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCCC-----CCCCcccCCCCCCC-------CCc----C
Q 004809 43 LLYTYS---HVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHT-----THSSQFLGLNPKSG-------AWP----V 103 (729)
Q Consensus 43 ~~~~y~---~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~gl~~~~~-------~w~----~ 103 (729)
+.+.|. .+|+|+.-.++.+-+..+++.|-++.++++...+... .+...-|||.++.. -|- +
T Consensus 135 i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~ 214 (501)
T KOG1153|consen 135 IKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE 214 (501)
T ss_pred cccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee
Confidence 445553 3899999999999999999999999999988776543 12222255544321 121 1
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCC
Q 004809 104 SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRD 183 (729)
Q Consensus 104 ~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D 183 (729)
-..|+||...|+||||+.+||+|.++ +.| |.| ++ . -....|
T Consensus 215 ~~aG~gvtaYv~DTGVni~H~dFegR------a~w-Ga~-----i~--------------~-------------~~~~~D 255 (501)
T KOG1153|consen 215 IDAGKGVTAYVLDTGVNIEHPDFEGR------AIW-GAT-----IP--------------P-------------KDGDED 255 (501)
T ss_pred cccCCCeEEEEecccccccccccccc------eec-ccc-----cC--------------C-------------CCcccc
Confidence 24699999999999999999999986 233 111 10 0 023568
Q ss_pred CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc---------CCcEE
Q 004809 184 ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID---------GVDVL 253 (729)
Q Consensus 184 ~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~---------gvdVI 253 (729)
++||||||||+|+++. .|||.+++|+++||+.++| +..+++++++|++++. +..|.
T Consensus 256 ~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~ 321 (501)
T KOG1153|consen 256 CNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVA 321 (501)
T ss_pred cCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEE
Confidence 9999999999999883 6999999999999999998 8999999999999975 48999
Q ss_pred EeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 254 SMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 254 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
|||+|+. ..-++..|+..|.+.||++++||||+..+. .+.++.+..+|||||++..
T Consensus 322 NlSlGg~----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------- 378 (501)
T KOG1153|consen 322 NLSLGGF----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------- 378 (501)
T ss_pred EEecCCc----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-------------------
Confidence 9999975 455677888899999999999999998765 4667889999999997532
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
+.+|.||+||++. ||.|||++|+|+|.+.
T Consensus 379 ---------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs---------- 407 (501)
T KOG1153|consen 379 ---------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGS---------- 407 (501)
T ss_pred ---------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcC----------
Confidence 2679999999999 9999999999999975
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCC---------CCHHHHHHHHHhcccc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPE---------WSPAAIRSAIMTTSDS 539 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~---------~sp~~Ik~~L~~TA~~ 539 (729)
.....++||||||+|||||++|..++.+|. .||.++|..+..-..+
T Consensus 408 -~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 408 -NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred -ccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 256789999999999999999999999883 3888998888776553
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=3.7e-39 Score=330.51 Aligned_cols=226 Identities=35% Similarity=0.486 Sum_probs=185.0
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+|||||+||+++||+|.+. ++..+.|..... ....|..+||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~----------~~~~~~~~HG 43 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN----------NDYQDGNGHG 43 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC----------CCCCCCCCCH
Confidence 799999999999999999864 111222221100 2356788999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCc
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYED 267 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~ 267 (729)
|||||+|+|..... .+.|+||+|+|+.+|++...+ +...++++++++|++.|++|||+|||... ...
T Consensus 44 T~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~ 111 (229)
T cd07477 44 THVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSP 111 (229)
T ss_pred HHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCH
Confidence 99999999975322 238999999999999998776 66789999999999999999999999743 344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeE
Q 004809 268 PVAIATFAAIEKNIFVSTSAGNQGPFIGTL--HNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPI 345 (729)
Q Consensus 268 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~--~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~l 345 (729)
.+..++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 112 ~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------- 159 (229)
T cd07477 112 ALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------------- 159 (229)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------------
Confidence 566666788899999999999999776554 7888999999985422
Q ss_pred EEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhh
Q 004809 346 VFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKI 425 (729)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 425 (729)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccc
Q 004809 426 ENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505 (729)
Q Consensus 426 ~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSM 505 (729)
..+..||++|+.. |+.|||.+|+++++. ..|..++||||
T Consensus 160 --------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~ 198 (229)
T cd07477 160 --------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSM 198 (229)
T ss_pred --------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHH
Confidence 1346789999854 999999999998874 47889999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 506 ACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 506 AaP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
|||+|||++|||+|++|+++|.+||++|++|
T Consensus 199 Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 199 ATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999986
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2e-40 Score=350.51 Aligned_cols=273 Identities=36% Similarity=0.489 Sum_probs=205.5
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChh
Q 004809 111 IIGVVDTGVWPESESYN-DGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGT 189 (729)
Q Consensus 111 vVgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 189 (729)
+|||||+|||++||+|. ++ + ...++.+.+.|.+.. .......|..+|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN--------PNPSPSDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB--------STTTSSSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC--------CCcCccccCCCccc
Confidence 69999999999999998 33 0 111233344444332 11134567889999
Q ss_pred HHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHH-HcCCcEEEeecCCCC--C-CCC
Q 004809 190 HTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAI-IDGVDVLSMSLGLDG--V-DLY 265 (729)
Q Consensus 190 HVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~-~~gvdVIn~SlG~~~--~-~~~ 265 (729)
||||+|+|.. . .+..+ ..|+||+|+|+.+|++...+....+++++|++++ +.+++|||+|||... . ...
T Consensus 51 ~va~ii~~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 51 HVAGIIAGNG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHHTT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhhccccc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccc
Confidence 9999999986 2 22222 3799999999999998877777888999999999 889999999998722 1 122
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCce
Q 004809 266 EDPVAIATFAAIEKNIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLID 342 (729)
Q Consensus 266 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~ 342 (729)
.+.+..+...+.++|+++|+||||+|.... ..+...+++|+||+.+.+
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~----------------------------- 174 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN----------------------------- 174 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-----------------------------
T ss_pred ccccccccccccccCcceeeccccccccccccccccccccccccccccccc-----------------------------
Confidence 334555566888999999999999987654 355666888999984311
Q ss_pred eeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHH
Q 004809 343 FPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDY 422 (729)
Q Consensus 343 ~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 422 (729)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcEEEEEecceeecCCCCCceecccCCCCCC-CCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeec
Q 004809 423 IKIENNATATIQFQKTELGTKPAPSVASYSSRGPSI-SCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQS 501 (729)
Q Consensus 423 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~-~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 501 (729)
..++.||++|+.. ..+ +||||+|||.+|++.++... ...|..++
T Consensus 175 -----------------------~~~~~~s~~g~~~~~~~--~~~di~a~G~~i~~~~~~~~----------~~~~~~~~ 219 (282)
T PF00082_consen 175 -----------------------GQPASYSNYGGPSDDGR--IKPDIAAPGGNILSAVPGSD----------RGSYTSFS 219 (282)
T ss_dssp -----------------------SSBSTTSSBSTTETTCT--TCEEEEEECSSEEEEETTTE----------SEEEEEEE
T ss_pred -----------------------ccccccccccccccccc--cccccccccccccccccccc----------cccccccC
Confidence 1457899997544 444 99999999999998887531 03578899
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 502 GTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 502 GTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
|||||||+|||++|||+|++|+|++.+||.+|++||+...... .......||||+||+.+|++
T Consensus 220 GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~----------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 220 GTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN----------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT----------SSSSHHHHTTSBE-HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC----------CCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999999999886211 12345678999999999864
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=6.8e-39 Score=341.15 Aligned_cols=251 Identities=27% Similarity=0.295 Sum_probs=175.8
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccc--cccccCCCCccCCCCCCCCCC
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNK--GLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~--~~~~~~~~~~~~~~~~~D~~g 186 (729)
.|+|||||||||++||+|.+.-.. ..+.+.. .+.......+.+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999863100 0000100 000000001111234567889
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCC-ChHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~ 265 (729)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...+++++|++|++++++|||+|||.......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998632 149999999999999987764 88899999999999999999999997542211
Q ss_pred --------CcHHHHHHHHHHhCCcEEEEecCCCCCCCC----------------------CcCCCCCceEEEcccccCcc
Q 004809 266 --------EDPVAIATFAAIEKNIFVSTSAGNQGPFIG----------------------TLHNGIPWVMTVAAGTMDRE 315 (729)
Q Consensus 266 --------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----------------------t~~~~~p~vitVgAst~d~~ 315 (729)
.+.+..++..+.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~---- 198 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD---- 198 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC----
Confidence 234556666778999999999999996531 1223445555555532
Q ss_pred ccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC
Q 004809 316 LGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF 395 (729)
Q Consensus 316 ~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 395 (729)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCE
Q 004809 396 DGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSI 475 (729)
Q Consensus 396 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I 475 (729)
..+.++.||++|+. ++|++|||+++
T Consensus 199 ------------------------------------------------~~~~~~~~S~~g~~-------~~~~~apG~~~ 223 (294)
T cd07482 199 ------------------------------------------------NNGNLSSFSNYGNS-------RIDLAAPGGDF 223 (294)
T ss_pred ------------------------------------------------CCCCcCccccCCCC-------cceEECCCCCc
Confidence 22356789999874 46999999988
Q ss_pred EeecCCCC--Ccc-c------cCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 004809 476 LAAWPSNL--AVS-Q------TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP-AAIRSAIMTT 536 (729)
Q Consensus 476 ~sa~~~~~--~~~-~------~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp-~~Ik~~L~~T 536 (729)
........ ... . .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 224 LLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 53221110 000 0 001123467899999999999999999999999999999 9999999987
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.5e-39 Score=332.15 Aligned_cols=215 Identities=23% Similarity=0.260 Sum_probs=166.0
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
+++|+|||||||||++||+|.++ ++..+.|...... . ........|..|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~--~~~~~~~~d~~g 50 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G--NKVSPYYVSADG 50 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c--ccCCCCCCCCCC
Confidence 78999999999999999999864 1122222211000 0 000012346889
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-------CChHHHHHHHHHHHHcCCcEEEeecCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-------SFTSDIIAAIDQAIIDGVDVLSMSLGL 259 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~il~ai~~A~~~gvdVIn~SlG~ 259 (729)
|||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.
T Consensus 51 HGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 51 HGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred cHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 9999999994 799999999999997643 456789999999999999999999997
Q ss_pred CCCC---CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-C--cCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 260 DGVD---LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-T--LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 260 ~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
.... .....+..++.+|.++|++||+||||+|.... + .+...|++|+|||.+.++
T Consensus 113 ~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g------------------- 173 (247)
T cd07491 113 KKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDG------------------- 173 (247)
T ss_pred ccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCC-------------------
Confidence 5432 12567788888999999999999999997654 3 345678999999965321
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 174 -------------------------------------------------------------------------------- 173 (247)
T cd07491 174 -------------------------------------------------------------------------------- 173 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.++.||++|+.. |+.|||++|+++++.. .
T Consensus 174 ---------------------------------~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~ 202 (247)
T cd07491 174 ---------------------------------GADAPVGDEDRV--------DYILPGENVEARDRPP----------L 202 (247)
T ss_pred ---------------------------------CCccccCCCCcc--------eEEeCCCceecCCcCC----------C
Confidence 456789998765 9999999999987521 1
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhh
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGA 520 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~ 520 (729)
.+.|..++|||||||||||++|||++.
T Consensus 203 ~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 203 SNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 257999999999999999999999984
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-38 Score=322.12 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=173.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+|||||||||++||+|.+.-. ..+.+..+. .........|..|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~------~~~~~~~~~d~~gHG 47 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLE------IIVVSAEGGDKDGHG 47 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------ccccccccc------cccCCCCCCCCCCcH
Confidence 79999999999999999986411 001110000 000113456788999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCc
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYED 267 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~ 267 (729)
|||||||++ .+|+++|+.+|+++..+ +...++++||+|+++.|++|||||||..... ...
T Consensus 48 T~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~ 108 (222)
T cd07492 48 TACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFP 108 (222)
T ss_pred HHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCH
Confidence 999999974 35999999999998776 7888999999999999999999999975432 335
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEE
Q 004809 268 PVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVF 347 (729)
Q Consensus 268 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~ 347 (729)
.+..++.++.++|+++|+||||++.... .++..+.+|+|++...++.
T Consensus 109 ~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~~-------------------------------- 155 (222)
T cd07492 109 LLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADDP-------------------------------- 155 (222)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCCC--------------------------------
Confidence 5667777888899999999999986543 3677889999987532110
Q ss_pred cCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcC
Q 004809 348 MDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIEN 427 (729)
Q Consensus 348 ~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 427 (729)
T Consensus 156 -------------------------------------------------------------------------------- 155 (222)
T cd07492 156 -------------------------------------------------------------------------------- 155 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchh
Q 004809 428 NATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507 (729)
Q Consensus 428 ~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 507 (729)
. +.++ .++|+.|||.+|+++++. ..|..++||||||
T Consensus 156 --------------------~---~~~~--------~~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aa 191 (222)
T cd07492 156 --------------------K---SFWY--------IYVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAA 191 (222)
T ss_pred --------------------c---cccc--------CCceEEeCCCCeEeecCC-------------CCEEEeccHHHHH
Confidence 0 1111 356999999999998774 4789999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 508 PQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 508 P~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
|+|||++|||+|++|+|+++|||++|+.||+
T Consensus 192 p~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 192 PHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.5e-39 Score=342.46 Aligned_cols=248 Identities=24% Similarity=0.229 Sum_probs=179.8
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|..+++|+||+|+|||||||++||+|.++-.. ...+.|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 355999999999999999999999999999865110 01111211100
Q ss_pred CCCCC--CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEE
Q 004809 177 AMNSP--RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLS 254 (729)
Q Consensus 177 ~~~~~--~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn 254 (729)
...+ .|..+|||||||||+|+.... .| ..||||+|+|+.+|++... .....+..++.++.+ .++|||
T Consensus 75 -~~~~~~~~~~gHGT~vAgiiag~~~~~---~~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin 143 (297)
T cd04059 75 -DPTPRYDDDNSHGTRCAGEIAAVGNNG---IC-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYS 143 (297)
T ss_pred -CCCCccccccccCcceeeEEEeecCCC---cc-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEE
Confidence 0112 278899999999999985322 11 3799999999999998754 344455566665544 469999
Q ss_pred eecCCCCCC----CCCcHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----cCCCCCceEEEcccccCccccEEEE
Q 004809 255 MSLGLDGVD----LYEDPVAIATFAAIE-----KNIFVSTSAGNQGPFIGT----LHNGIPWVMTVAAGTMDRELGATLT 321 (729)
Q Consensus 255 ~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~t----~~~~~p~vitVgAst~d~~~~~~~~ 321 (729)
+|||..... ........++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 144 ~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (297)
T cd04059 144 NSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-------- 215 (297)
T ss_pred CCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--------
Confidence 999975432 122333444445543 699999999999973221 22456889999985422
Q ss_pred eCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceee
Q 004809 322 LGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFF 401 (729)
Q Consensus 322 l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 401 (729)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCC-------
Q 004809 402 LQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS------- 474 (729)
Q Consensus 402 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~------- 474 (729)
+.++.||++|+.. ++.|||..
T Consensus 216 --------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~ 243 (297)
T cd04059 216 --------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEAS 243 (297)
T ss_pred --------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCc
Confidence 2457899999876 79999987
Q ss_pred EEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 475 ILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 475 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 244 i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 244 IVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66655431 0146788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.1e-37 Score=326.51 Aligned_cols=242 Identities=26% Similarity=0.289 Sum_probs=186.5
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCC
Q 004809 106 FGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDAN 185 (729)
Q Consensus 106 ~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~ 185 (729)
+|+||+|+|||+||+++||+|.+..... ..+..... .......|..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~-------~~~~~~~~~~ 46 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND-------AGYASNGDGD 46 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc-------ccCCCCCCCC
Confidence 5999999999999999999998752110 00000000 0012345678
Q ss_pred CChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 004809 186 GHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVD 263 (729)
Q Consensus 186 gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~ 263 (729)
+|||||||+|+|+... ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+|||.....
T Consensus 47 ~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~ 117 (267)
T cd04848 47 SHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAI 117 (267)
T ss_pred ChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcc
Confidence 9999999999998543 2248999999999999998764 5667788999999999999999999986522
Q ss_pred ------------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------CCCCCceEEEcccccCccccEEEEe
Q 004809 264 ------------LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL---------HNGIPWVMTVAAGTMDRELGATLTL 322 (729)
Q Consensus 264 ------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~---------~~~~p~vitVgAst~d~~~~~~~~l 322 (729)
.....+......+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-------- 189 (267)
T cd04848 118 DTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-------- 189 (267)
T ss_pred cccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--------
Confidence 1455666677788899999999999998654322 23467889999865332
Q ss_pred CCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeec
Q 004809 323 GNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFL 402 (729)
Q Consensus 323 ~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 402 (729)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceec--ccCCCCCCCCCCCccCcEEecCCCEEeecC
Q 004809 403 QSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVAS--YSSRGPSISCPFVLKPDVMAPGDSILAAWP 480 (729)
Q Consensus 403 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--FSS~GP~~~~~~ilKPDI~APG~~I~sa~~ 480 (729)
.... ||++|+... .+++.|||.+|+++.+
T Consensus 190 --------------------------------------------~~~~~~~s~~~~~~~-----~~~~~apG~~i~~~~~ 220 (267)
T cd04848 190 --------------------------------------------TIASYSYSNRCGVAA-----NWCLAAPGENIYSTDP 220 (267)
T ss_pred --------------------------------------------Ccccccccccchhhh-----hheeecCcCceeeccc
Confidence 1222 588887653 3489999999999876
Q ss_pred CCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 481 SNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 221 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 221 DG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 31 247889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-35 Score=312.66 Aligned_cols=349 Identities=23% Similarity=0.341 Sum_probs=256.1
Q ss_pred cHHHHHHHHhcccc-cccccccccccccCCCceEEEecceeeEEEEEeCH-----HHHHHhhcCCCeEEEEcCCccCCCC
Q 004809 12 GQHGWYSATLQSVS-GNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP-----AELEALKSSPGYISSIRDLPVKPHT 85 (729)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~-----~~~~~L~~~p~V~~V~~~~~~~~~~ 85 (729)
.|+..+++.|.+.. ..-. -..+...-..|..-|.-+-++-.. -+++.|..+|.|+.|.|.+.+..-.
T Consensus 64 ~r~syi~skl~gS~VtnWr-------iipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l 136 (1033)
T KOG4266|consen 64 DRRSYIESKLRGSGVTNWR-------IIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGL 136 (1033)
T ss_pred HHHHHHHHHhhcCCCCcee-------EeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcc
Confidence 36777777775322 1000 001223344565566666665443 3478899999999999887654311
Q ss_pred ------------CCCCcc------------------cC--C--C--------CCCCCCcCCCCCCCcEEEEEcccCCCCC
Q 004809 86 ------------THSSQF------------------LG--L--N--------PKSGAWPVSKFGKDIIIGVVDTGVWPES 123 (729)
Q Consensus 86 ------------~~s~~~------------------~g--l--~--------~~~~~w~~~~~G~gvvVgVIDtGid~~H 123 (729)
++...+ ++ | . .++-+|.+|++|++|+|||+|||+.-+|
T Consensus 137 ~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~H 216 (1033)
T KOG4266|consen 137 SYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADH 216 (1033)
T ss_pred cccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCC
Confidence 000000 00 0 0 1234999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCC
Q 004809 124 ESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERA 203 (729)
Q Consensus 124 p~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~ 203 (729)
|.|+.-. ....| -| . ....|..||||.|||+|||..
T Consensus 217 PHFrnvK---ERTNW--------------TN-----------E------------~tLdD~lgHGTFVAGvia~~~---- 252 (1033)
T KOG4266|consen 217 PHFRNVK---ERTNW--------------TN-----------E------------DTLDDNLGHGTFVAGVIAGRN---- 252 (1033)
T ss_pred ccccchh---hhcCC--------------cC-----------c------------cccccCcccceeEeeeeccch----
Confidence 9998520 00011 11 0 235578899999999999873
Q ss_pred ccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcE
Q 004809 204 SYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIF 282 (729)
Q Consensus 204 ~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~ 282 (729)
...|.||+++|+++|||.+.. .+.+.+++||.||+....||+|+|+|++ ++.+.++.+.+.+...++|+
T Consensus 253 --------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKVwEltAnNvI 322 (1033)
T KOG4266|consen 253 --------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKVWELTANNVI 322 (1033)
T ss_pred --------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHHHhhccCcEE
Confidence 137999999999999998766 7889999999999999999999999985 46677888888888899999
Q ss_pred EEEecCCCCCCCCCcCCCCC--ceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccC
Q 004809 283 VSTSAGNQGPFIGTLHNGIP--WVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360 (729)
Q Consensus 283 vV~AAGN~G~~~~t~~~~~p--~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~ 360 (729)
+|.|+||+||-.++..|.+. .+|.||.
T Consensus 323 MvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------------------------------- 351 (1033)
T KOG4266|consen 323 MVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------------------------------- 351 (1033)
T ss_pred EEEecCCCCcceeecCCcccccceeeecc---------------------------------------------------
Confidence 99999999999998887654 3444443
Q ss_pred CceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceee
Q 004809 361 GQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTEL 440 (729)
Q Consensus 361 ~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 440 (729)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceecccCCCCCCC----CCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHH
Q 004809 441 GTKPAPSVASYSSRGPSIS----CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAAL 516 (729)
Q Consensus 441 ~~~~~~~~a~FSS~GP~~~----~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 516 (729)
.+..+.+|.|||||-+.. +.+.+||||++-|.+|..+... .+...+||||.|+|.|||+++|
T Consensus 352 -IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~L 417 (1033)
T KOG4266|consen 352 -IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCL 417 (1033)
T ss_pred -ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeee
Confidence 223447899999997542 3456999999999999776442 5778899999999999999999
Q ss_pred HHh----hCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCCCcccc
Q 004809 517 LRG----AHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYD 580 (729)
Q Consensus 517 l~q----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d 580 (729)
|.+ +.--+.|+.+|++|+..|.++... .-|.||+|++|+.++.+--+-|.
T Consensus 418 LvS~~~qk~dl~NPASmKQaLiegA~kLpg~--------------NMfEQGaGkldLL~syqiL~SYk 471 (1033)
T KOG4266|consen 418 LVSVEAQKKDLLNPASMKQALIEGAAKLPGP--------------NMFEQGAGKLDLLESYQILKSYK 471 (1033)
T ss_pred EeeeheehhhccCHHHHHHHHHhHHhhCCCC--------------chhhccCcchhHHHHHHHHHhcC
Confidence 966 334568999999999999988642 35799999999999876333343
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=296.71 Aligned_cols=238 Identities=27% Similarity=0.359 Sum_probs=178.8
Q ss_pred CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCC-C--CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 184 ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE-G--SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 184 ~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
..-|||||||||+|+..+... ..|+||+|+|+++++.+.. | -+...+.+|+..+++..+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 346999999999999765432 3699999999999997643 3 4566788999999999999999999976
Q ss_pred CC-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC---CCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 261 GV-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN---GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 261 ~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~---~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
.. +.....+...-..+.++|+++|+||||+||.-.|++. ....+|.|||.-......+
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a------------------ 442 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA------------------ 442 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh------------------
Confidence 52 3333444443334448899999999999998877764 3457888888422111000
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 443 -------------------------------------------------------------------------------- 442 (1304)
T KOG1114|consen 443 -------------------------------------------------------------------------------- 442 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
..... .+-...+..+|||||+.|+. +-..|+|||+.|-+- |... -..
T Consensus 443 --~y~~~------------------e~vp~~~YtWsSRgP~~DG~--lGVsi~APggAiAsV-P~~t----------lq~ 489 (1304)
T KOG1114|consen 443 --EYSVR------------------EPVPSNPYTWSSRGPCLDGD--LGVSISAPGGAIASV-PQYT----------LQN 489 (1304)
T ss_pred --hhhhh------------------ccCCCCccccccCCCCcCCC--cceEEecCCccccCC-chhh----------hhh
Confidence 00000 01122467899999999987 888999999988553 2110 135
Q ss_pred ceeeccccchhHHHHHHHHHHH----hhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 497 FNLQSGTSMACPQAAGIAALLR----GAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~----q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
-..|.|||||+|+++|.+|||+ |.+-.|||..||.+|++||++++.- .+|.+|.|+|++.+|
T Consensus 490 ~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i--------------d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 490 SQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI--------------DSFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------------chhccCcceeehhHH
Confidence 6789999999999999999985 4578999999999999999988542 578999999999999
Q ss_pred CC
Q 004809 573 LD 574 (729)
Q Consensus 573 l~ 574 (729)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 76
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=6.5e-32 Score=278.02 Aligned_cols=193 Identities=18% Similarity=0.083 Sum_probs=140.7
Q ss_pred CCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHH--HHcCCcEEEeecC
Q 004809 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQA--IIDGVDVLSMSLG 258 (729)
Q Consensus 181 ~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A--~~~gvdVIn~SlG 258 (729)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4677999998765522 1233466777888 5678999999999
Q ss_pred CCCCCC------CCcHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCcCCCCCceEEEcccccCccccEEEEeCCCc
Q 004809 259 LDGVDL------YEDPVAIATFAAIEK-NIFVSTSAGNQGPFI-----GTLHNGIPWVMTVAAGTMDRELGATLTLGNGN 326 (729)
Q Consensus 259 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~ 326 (729)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 764321 223455666666655 999999999999743 2234567889999986532110
Q ss_pred EEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccc
Q 004809 327 TVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSF 406 (729)
Q Consensus 327 ~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 406 (729)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCC--CCCCCCCCCccCcEEecCCCEEeecCCCCC
Q 004809 407 PAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSR--GPSISCPFVLKPDVMAPGDSILAAWPSNLA 484 (729)
Q Consensus 407 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~--GP~~~~~~ilKPDI~APG~~I~sa~~~~~~ 484 (729)
...+.||++ +|+...+ .||||+|||++|++ +.
T Consensus 165 ---------------------------------------~~~s~~sn~~~~~~~~~~--~~~di~APG~~i~s--~~--- 198 (247)
T cd07488 165 ---------------------------------------FFASDVSNAGSEINSYGR--RKVLIVAPGSNYNL--PD--- 198 (247)
T ss_pred ---------------------------------------ceecccccccCCCCCCCC--ceeEEEEeeeeEEC--CC---
Confidence 022445554 4554444 89999999999998 21
Q ss_pred ccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 004809 485 VSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWS------PAAIRSAIMTTS 537 (729)
Q Consensus 485 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s------p~~Ik~~L~~TA 537 (729)
+.|..++|||||||||||++|||++++|++. -.++|.+|+.|+
T Consensus 199 ----------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 199 ----------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred ----------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 4688999999999999999999999987665 456777777653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=2e-30 Score=265.93 Aligned_cols=197 Identities=38% Similarity=0.509 Sum_probs=158.4
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHH-HcCCcEEEeec
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAI-IDGVDVLSMSL 257 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~-~~gvdVIn~Sl 257 (729)
...+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||+||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 355778999999999999854321 16999999999999987765 67788999999999 89999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 258 GLDGVDLYEDPVAIATFAAIEK-NIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 258 G~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
|..... ....+...+..+.++ |+++|+|+||.+.... ..++..+++|+||+++.+...
T Consensus 110 g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~----------------- 171 (241)
T cd00306 110 GGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTP----------------- 171 (241)
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCc-----------------
Confidence 986433 345566667777777 9999999999998766 477789999999996533210
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 172 -------------------------------------------------------------------------------- 171 (241)
T cd00306 172 -------------------------------------------------------------------------------- 171 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
...++++| .|||+.|||.++...... .
T Consensus 172 ----------------------------------~~~~~~~~--------~~~~~~apg~~~~~~~~~-----------~ 198 (241)
T cd00306 172 ----------------------------------ASPSSNGG--------AGVDIAAPGGDILSSPTT-----------G 198 (241)
T ss_pred ----------------------------------cCCcCCCC--------CCceEEeCcCCccCcccC-----------C
Confidence 01334333 477999999999875111 1
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
...+..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 199 ~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 2578999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.7e-23 Score=236.21 Aligned_cols=271 Identities=31% Similarity=0.404 Sum_probs=196.6
Q ss_pred CCCCcC--CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCc
Q 004809 98 SGAWPV--SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTIT 175 (729)
Q Consensus 98 ~~~w~~--~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 175 (729)
...|.. +++|+|+.|+|||+||+..||+|.+... ..++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccCC--------
Confidence 457887 8999999999999999999999987511 001222111
Q ss_pred cCCC-CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCC-C-CChHHHHHHHHHHHHcC--C
Q 004809 176 IAMN-SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE-G-SFTSDIIAAIDQAIIDG--V 250 (729)
Q Consensus 176 ~~~~-~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~il~ai~~A~~~g--v 250 (729)
.. ...|..+|||||++++++....+ .....|+||+++++.+|++... | ...++++.+|++++..+ +
T Consensus 175 --~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 245 (508)
T COG1404 175 --PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPA 245 (508)
T ss_pred --CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCC
Confidence 01 24688999999999999842111 1113799999999999999866 5 67778899999999999 9
Q ss_pred cEEEeecCCCCCCCCCcHHHHHHHHHHhCC-cEEEEecCCCCCCCC----CcCCCC--CceEEEcccccCccccEEEEeC
Q 004809 251 DVLSMSLGLDGVDLYEDPVAIATFAAIEKN-IFVSTSAGNQGPFIG----TLHNGI--PWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 251 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----t~~~~~--p~vitVgAst~d~~~~~~~~l~ 323 (729)
++||||+|..........+..++..++..| +++|+++||.|.... ..+... +.+++|++.+.
T Consensus 246 ~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~----------- 314 (508)
T COG1404 246 DVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL----------- 314 (508)
T ss_pred cEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-----------
Confidence 999999997522234455566666777777 999999999986652 122222 35666666331
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEe-----e
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILA-----A 478 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~s-----a 478 (729)
.+.++.||++|+.. ..+++|||.+|.+ .
T Consensus 315 -----------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~ 347 (508)
T COG1404 315 -----------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNT 347 (508)
T ss_pred -----------------------------------------CCccccccccCCCC------CcceeCCCcccccccccee
Confidence 23668899999861 2399999999988 4
Q ss_pred cCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCC
Q 004809 479 WPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP-EWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPA 557 (729)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 557 (729)
+++. ...|..++||||++|||+|++||+++.+| .+++.+++..+..++.. . ....
T Consensus 348 ~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~ 403 (508)
T COG1404 348 LPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T------------PLSG 403 (508)
T ss_pred eeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c------------cCCc
Confidence 4321 02499999999999999999999999999 89999999998888874 0 0111
Q ss_pred CCCCCCccccCccCcCC
Q 004809 558 TPIAMGAGHINPDKALD 574 (729)
Q Consensus 558 ~~~~~G~G~vn~~~Al~ 574 (729)
....++.|..+...+..
T Consensus 404 ~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 404 VDNLVGGGLANLDAAAT 420 (508)
T ss_pred cccccccCccccccccc
Confidence 33456666666555543
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=3.4e-17 Score=178.85 Aligned_cols=100 Identities=25% Similarity=0.239 Sum_probs=80.8
Q ss_pred eeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHc---CCcEEEeecCCCCCC---CCCcHHHHHHHHHHhCCcEEEEe
Q 004809 213 ALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIID---GVDVLSMSLGLDGVD---LYEDPVAIATFAAIEKNIFVSTS 286 (729)
Q Consensus 213 ~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~---gvdVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 286 (729)
+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaA 159 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAA 159 (361)
T ss_pred HHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 5799999999999997542 45678888888887 999999999975432 13356777778888999999999
Q ss_pred cCCCCCCCC-----------CcCCCCCceEEEcccccCcc
Q 004809 287 AGNQGPFIG-----------TLHNGIPWVMTVAAGTMDRE 315 (729)
Q Consensus 287 AGN~G~~~~-----------t~~~~~p~vitVgAst~d~~ 315 (729)
+||+|.... ..++..||+++||+++....
T Consensus 160 sGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 160 SGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999997653 34678999999999886554
No 43
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-18 Score=174.73 Aligned_cols=306 Identities=18% Similarity=0.238 Sum_probs=180.7
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..|++|++|.++|+|.||||-||++..+ |+ --..++|... .|.+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssn-------dpfp 198 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSN-------DPFP 198 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccC-------CCCC
Confidence 34899999999999999999999999999753 11 1112222221 1222
Q ss_pred CCCCCC--CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEE
Q 004809 178 MNSPRD--ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLS 254 (729)
Q Consensus 178 ~~~~~D--~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn 254 (729)
+.--.| .+.|||.|||-+++...+ +..| .|||.+.++..+|+++. -+-.|+++|-..--+ ...+|.+
T Consensus 199 yprytddwfnshgtrcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiys 268 (629)
T KOG3526|consen 199 YPRYTDDWFNSHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYS 268 (629)
T ss_pred CCcccchhhhccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEe
Confidence 211222 468999999988776543 3444 49999999999999864 455566554322211 2378999
Q ss_pred eecCCCCCCCC----CcHHHHHHHHHHh-----CCcEEEEecCCCCCCCC-CcC--CCCCceEEEcccccCccccEEEEe
Q 004809 255 MSLGLDGVDLY----EDPVAIATFAAIE-----KNIFVSTSAGNQGPFIG-TLH--NGIPWVMTVAAGTMDRELGATLTL 322 (729)
Q Consensus 255 ~SlG~~~~~~~----~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~-t~~--~~~p~vitVgAst~d~~~~~~~~l 322 (729)
.|||.....-. .+...+++.+-++ .|-+.|.|.|..|.... ... +.+-|.|++-+.--
T Consensus 269 aswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsain---------- 338 (629)
T KOG3526|consen 269 ASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIN---------- 338 (629)
T ss_pred cccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhc----------
Confidence 99997432211 1222223223332 35689999998775421 111 23345555533110
Q ss_pred CCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeec
Q 004809 323 GNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFL 402 (729)
Q Consensus 323 ~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 402 (729)
+|+ ...|.+.|..
T Consensus 339 -dg~-----------------nahydescss------------------------------------------------- 351 (629)
T KOG3526|consen 339 -DGE-----------------NAHYDESCSS------------------------------------------------- 351 (629)
T ss_pred -CCc-----------------cccccchhhH-------------------------------------------------
Confidence 111 0011112210
Q ss_pred cccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCC
Q 004809 403 QSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSN 482 (729)
Q Consensus 403 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~ 482 (729)
-..+.||+-|-++.. |+..
T Consensus 352 -------------------------------------------tlastfsng~rnpet-----------gvat------- 370 (629)
T KOG3526|consen 352 -------------------------------------------TLASTFSNGGRNPET-----------GVAT------- 370 (629)
T ss_pred -------------------------------------------HHHHHhhcCCcCCCc-----------ceee-------
Confidence 023457776554421 1111
Q ss_pred CCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCC----cccCCCCCCCCC
Q 004809 483 LAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSD----IKDIGDDNKPAT 558 (729)
Q Consensus 483 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~----~~~~~~~~~~~~ 558 (729)
.+..+.....-||||.|+|-.||+.||.++++|.+++.+++.+-.-|.+...-.... +.-.+ .....
T Consensus 371 -------tdlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mng--vglef 441 (629)
T KOG3526|consen 371 -------TDLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNG--VGLEF 441 (629)
T ss_pred -------eccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccc--cceee
Confidence 011224566789999999999999999999999999999999887777654321110 00000 11223
Q ss_pred CCCCCccccCccCcCCCCccccCChhhHHHHhhhcCC
Q 004809 559 PIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNL 595 (729)
Q Consensus 559 ~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~ 595 (729)
+..||+|.+|+.+.+....-+.+.+.- |-|.-|.
T Consensus 442 nhlfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 442 NHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred ecccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 457999999998877655555555542 4466554
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.40 E-value=1.4e-12 Score=123.55 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=96.5
Q ss_pred CCceeeEEEcCCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceee-c-c-ccccEEEechh
Q 004809 339 SLIDFPIVFMDECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFF-L-Q-SSFPAVFMNSK 414 (729)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~-~-~~~p~~~i~~~ 414 (729)
.....+++|.+.|...++. .+++|||+||+|+.|.+.+|..+++++||.|+|++++..+.... . . ..+|++.|+..
T Consensus 24 ~~~~~~lv~~g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~ 103 (143)
T cd02133 24 LGKTYELVDAGLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKE 103 (143)
T ss_pred CCcEEEEEEccCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHH
Confidence 3467899999988877776 78999999999999999999999999999999999985432211 1 1 47899999999
Q ss_pred hHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCC
Q 004809 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSI 458 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~ 458 (729)
+|+.|.+|+++ +++|.+..+.. ..+++.++.||||||.-
T Consensus 104 dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 104 DGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred HHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999999987 67777777766 56788999999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.33 E-value=1.1e-11 Score=114.89 Aligned_cols=111 Identities=34% Similarity=0.544 Sum_probs=91.8
Q ss_pred EEeCCCcEEEeeeecCCCCCCceeeEEEc---------CCccccccc-ccCCceEEEEccCCC-chhhHHHHHHhCCceE
Q 004809 320 LTLGNGNTVTGLSLYPGNSSLIDFPIVFM---------DECLNLAEL-KKVGQKIVVCQDKND-SLSNQVDNIQNASVSG 388 (729)
Q Consensus 320 ~~l~~g~~~~g~~~~~~~~~~~~~~lv~~---------~~c~~~~~~-~~~~gkiv~~~~g~~-~~~~~~~~~~~~Ga~g 388 (729)
++|+||+++.|++++++.. ..+++++. +.|.+..+. .+++||||||+|+.+ .+.+|..+++++||.|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~g 79 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAG 79 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcE
Confidence 6799999999999997664 34555542 359888887 889999999999999 9999999999999999
Q ss_pred EEEEecCCCc-eeecc-ccccEEEechhhHHHHHHHHhhcCCcEEE
Q 004809 389 GVFISDFDGL-EFFLQ-SSFPAVFMNSKTGDILKDYIKIENNATAT 432 (729)
Q Consensus 389 ~i~~~~~~~~-~~~~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 432 (729)
+|++++..+. ..... ..+|++.|+..+|+.|++|++++.+++++
T Consensus 80 vI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 80 MILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999984332 22223 68999999999999999999988776654
No 46
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.80 E-value=1.2e-08 Score=90.29 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=64.4
Q ss_pred eeeEE------EcCCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec----CCCce-eecc-ccccE
Q 004809 342 DFPIV------FMDECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD----FDGLE-FFLQ-SSFPA 408 (729)
Q Consensus 342 ~~~lv------~~~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~----~~~~~-~~~~-~~~p~ 408 (729)
..+|| ....|...... .+++||||||+||.|.+.+|..+++++||.|+|++|. ..... .... ..+|+
T Consensus 7 ~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~ 86 (101)
T PF02225_consen 7 TGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPV 86 (101)
T ss_dssp EEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEE
T ss_pred EEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEE
Confidence 45666 33457677777 9999999999999999999999999999999999992 11111 2223 89999
Q ss_pred EEechhhHHHHHHHH
Q 004809 409 VFMNSKTGDILKDYI 423 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~ 423 (729)
+.|+..+|+.|++|+
T Consensus 87 v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 87 VFISYEDGEALLAYI 101 (101)
T ss_dssp EEE-HHHHHHHHHHH
T ss_pred EEeCHHHHhhhhccC
Confidence 999999999999986
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.65 E-value=1.3e-07 Score=87.08 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=67.5
Q ss_pred CCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCcee-----ec-c-ccccEEEechhhHHHHH
Q 004809 349 DECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF-----FL-Q-SSFPAVFMNSKTGDILK 420 (729)
Q Consensus 349 ~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-----~~-~-~~~p~~~i~~~~g~~l~ 420 (729)
..|.+..+. .+++|||+||+|+.|.+.+|..+++++||.|+|++|+..+... .. . ..+|++.|+..+|+.|+
T Consensus 30 ~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~ 109 (122)
T cd04816 30 AGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALR 109 (122)
T ss_pred cCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHH
Confidence 358887776 7899999999999999999999999999999999998442111 11 2 56999999999999999
Q ss_pred HHHhhcCCcE
Q 004809 421 DYIKIENNAT 430 (729)
Q Consensus 421 ~~~~~~~~~~ 430 (729)
+++.++.+.+
T Consensus 110 ~~l~~g~~v~ 119 (122)
T cd04816 110 RRLGAGETLE 119 (122)
T ss_pred HHHcCCCEEE
Confidence 9997765443
No 48
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=1.5e-07 Score=85.65 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC--ceee-------cc-ccccEEEechhhHHH
Q 004809 349 DECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG--LEFF-------LQ-SSFPAVFMNSKTGDI 418 (729)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~--~~~~-------~~-~~~p~~~i~~~~g~~ 418 (729)
..|.+.....+++|||+|++||.|.|.+|..+++++||.++|++|+..+ .... .. ..+|++.|+..+|+.
T Consensus 22 ~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~ 101 (118)
T cd02127 22 EACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYM 101 (118)
T ss_pred ccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHH
Confidence 3588644336899999999999999999999999999999999998332 1111 12 579999999999999
Q ss_pred HHHHHhhcCCcEEEEE
Q 004809 419 LKDYIKIENNATATIQ 434 (729)
Q Consensus 419 l~~~~~~~~~~~~~i~ 434 (729)
|++.+..+..+++.|.
T Consensus 102 L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 102 IRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHcCCceEEeee
Confidence 9999998888776654
No 49
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.62 E-value=1.6e-07 Score=85.95 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=67.3
Q ss_pred CcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-eee----cc-ccccEEEechhhHHHHHHHH
Q 004809 350 ECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-EFF----LQ-SSFPAVFMNSKTGDILKDYI 423 (729)
Q Consensus 350 ~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~----~~-~~~p~~~i~~~~g~~l~~~~ 423 (729)
.|.+..+..+++|||+||+|+.|.+..|..+++++||.|+|++++.... ... .. ..+|++.|+..+|+.|++|+
T Consensus 29 ~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l 108 (118)
T cd04818 29 GCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAAL 108 (118)
T ss_pred ccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHH
Confidence 5988877666999999999999999999999999999999999984432 221 12 57999999999999999999
Q ss_pred hhcCCcE
Q 004809 424 KIENNAT 430 (729)
Q Consensus 424 ~~~~~~~ 430 (729)
+.+...+
T Consensus 109 ~~g~~v~ 115 (118)
T cd04818 109 AAGGTVT 115 (118)
T ss_pred hcCCcEE
Confidence 8765443
No 50
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.60 E-value=5.2e-07 Score=83.04 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=71.7
Q ss_pred eeeEEEcC--CcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC-CCcee----ecc-ccccEEEech
Q 004809 342 DFPIVFMD--ECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF-DGLEF----FLQ-SSFPAVFMNS 413 (729)
Q Consensus 342 ~~~lv~~~--~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~-~~~~~----~~~-~~~p~~~i~~ 413 (729)
.-++++.. .|.+..+..+++|||+|++|+.|.+.+|..+++++||.|+|++|+. .+... ..+ ..+|++.|+.
T Consensus 23 ~g~lv~~~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~ 102 (122)
T cd02130 23 TGPLVVVPNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ 102 (122)
T ss_pred EEEEEEeCCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH
Confidence 45566654 6886555467999999999999999999999999999999999984 43211 112 5799999999
Q ss_pred hhHHHHHHHHhhcCCcEE
Q 004809 414 KTGDILKDYIKIENNATA 431 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~ 431 (729)
.+|+.|++.+.++.+.+.
T Consensus 103 ~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 103 EDGKALVAALANGGEVSA 120 (122)
T ss_pred HHHHHHHHHHhcCCcEEE
Confidence 999999999987765543
No 51
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.59 E-value=4.2e-08 Score=83.40 Aligned_cols=67 Identities=34% Similarity=0.595 Sum_probs=49.3
Q ss_pred cccHHHHHHHHhcccccccccccccccccCCCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCC
Q 004809 10 FRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPH 84 (729)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 84 (729)
...|.+|+.+++.+..... .....+++|+|+..||||+++++++++++|+++|+|++|+||+.+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSA--------SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHH----HHHHTH---------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred HHHHHHHHHHHHhhhhhhh--------cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 5678889998876532100 011689999999999999999999999999999999999999988764
No 52
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.51 E-value=4e-07 Score=83.96 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=65.3
Q ss_pred ccccc--cc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC--cee-e----cc-ccccEEEechhhHHHH
Q 004809 351 CLNLA--EL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG--LEF-F----LQ-SSFPAVFMNSKTGDIL 419 (729)
Q Consensus 351 c~~~~--~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~--~~~-~----~~-~~~p~~~i~~~~g~~l 419 (729)
|.... +. .+++||||||+|+.|.+.+|..+++++||.|+|++++... ... . .. ..+|++.|+..+|+.|
T Consensus 33 C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l 112 (126)
T cd00538 33 CGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEAL 112 (126)
T ss_pred EecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHH
Confidence 87776 55 7899999999999999999999999999999999998432 111 1 13 6799999999999999
Q ss_pred HHHHhhcCCc
Q 004809 420 KDYIKIENNA 429 (729)
Q Consensus 420 ~~~~~~~~~~ 429 (729)
++|+.+..+.
T Consensus 113 ~~~~~~~~~v 122 (126)
T cd00538 113 LSLLEAGKTV 122 (126)
T ss_pred HHHHhcCCce
Confidence 9999875543
No 53
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.51 E-value=5e-07 Score=81.92 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=69.4
Q ss_pred ceeeEEEcC---Cccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce---ee--cc-ccccEEE
Q 004809 341 IDFPIVFMD---ECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE---FF--LQ-SSFPAVF 410 (729)
Q Consensus 341 ~~~~lv~~~---~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~--~~-~~~p~~~ 410 (729)
..+|++... .|....+. .+++|||+|++||.|+|.+|..+++++||.++|++|+..... .. .. ..||++.
T Consensus 20 ~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~ 99 (120)
T cd02129 20 TLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVAL 99 (120)
T ss_pred cceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEE
Confidence 456776654 49888877 789999999999999999999999999999999999943211 11 12 6789999
Q ss_pred echhhHHHHHHHHhh
Q 004809 411 MNSKTGDILKDYIKI 425 (729)
Q Consensus 411 i~~~~g~~l~~~~~~ 425 (729)
|+..+|+.|.+.+..
T Consensus 100 Is~~dG~~i~~~l~~ 114 (120)
T cd02129 100 LSYKDMLDIQQTFGD 114 (120)
T ss_pred EeHHHHHHHHHHhcc
Confidence 999999999888753
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.49 E-value=5.1e-07 Score=84.52 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=69.2
Q ss_pred CCcccccc--c-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCC-Cc-eeec--c--ccccEEEechhhHHHH
Q 004809 349 DECLNLAE--L-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFD-GL-EFFL--Q--SSFPAVFMNSKTGDIL 419 (729)
Q Consensus 349 ~~c~~~~~--~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~-~~-~~~~--~--~~~p~~~i~~~~g~~l 419 (729)
..|.+... + .++.|+|+|++||.|.|.+|..+++++||.++|++|+.. +. .+.+ + ..+|+++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 45987776 4 779999999999999999999999999999999999954 32 2221 2 4689999999999999
Q ss_pred HHHHhhcCCcEEE
Q 004809 420 KDYIKIENNATAT 432 (729)
Q Consensus 420 ~~~~~~~~~~~~~ 432 (729)
++++.++.+.+.+
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999877665543
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.47 E-value=5.6e-07 Score=83.17 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=66.0
Q ss_pred CCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-----eee--------cc-ccccEEEechh
Q 004809 349 DECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-----EFF--------LQ-SSFPAVFMNSK 414 (729)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-----~~~--------~~-~~~p~~~i~~~ 414 (729)
..|.+.....+++|||+|++||.|.|.+|..+++++||.++|++|+..+. ... .+ ..||++.|+..
T Consensus 28 ~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~ 107 (126)
T cd02126 28 RACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK 107 (126)
T ss_pred hcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHH
Confidence 35876554467899999999999999999999999999999999873321 111 12 57899999999
Q ss_pred hHHHHHHHHhhcCCcE
Q 004809 415 TGDILKDYIKIENNAT 430 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~ 430 (729)
+|+.|++++......+
T Consensus 108 dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 108 EGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHhCCceE
Confidence 9999999998765443
No 56
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.42 E-value=1e-06 Score=82.18 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=63.8
Q ss_pred eeEEEcCCccccccc-ccCCceEEEEccCCCc-----hhhHHHHHHhCCceEEEEEecC--CCce--eecc----ccccE
Q 004809 343 FPIVFMDECLNLAEL-KKVGQKIVVCQDKNDS-----LSNQVDNIQNASVSGGVFISDF--DGLE--FFLQ----SSFPA 408 (729)
Q Consensus 343 ~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~~~~--~~~~--~~~~----~~~p~ 408 (729)
-++++.+.+. .++. .+++|||+|++||.|. |.+|..+++++||.|+|+||+. .+.. ...+ ..+|+
T Consensus 38 g~lv~~g~~g-~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~ 116 (139)
T cd04817 38 GSLYYCGTSG-GSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPS 116 (139)
T ss_pred EEEEEccCCC-ccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeE
Confidence 3566543211 1333 6899999999999999 9999999999999999999995 5421 1122 57999
Q ss_pred EEechhhHHHHHHHHhh
Q 004809 409 VFMNSKTGDILKDYIKI 425 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~ 425 (729)
+.|+..+|+.|++.+..
T Consensus 117 v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 117 VSVDRADGQALLAALGQ 133 (139)
T ss_pred EEeeHHHHHHHHHHhcC
Confidence 99999999999988743
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.41 E-value=1.9e-06 Score=79.49 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=65.0
Q ss_pred Cccccccc---c----cCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCcee------------ecc-ccccEE
Q 004809 350 ECLNLAEL---K----KVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF------------FLQ-SSFPAV 409 (729)
Q Consensus 350 ~c~~~~~~---~----~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------------~~~-~~~p~~ 409 (729)
.|.+.... . ...++|+|++||.|.|.+|..+++++||.++|++|+.++... ..+ ..+|++
T Consensus 24 gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v 103 (127)
T cd02125 24 GCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSA 103 (127)
T ss_pred cCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEE
Confidence 58766543 2 478899999999999999999999999999999998443211 112 469999
Q ss_pred EechhhHHHHHHHHhhcCCcE
Q 004809 410 FMNSKTGDILKDYIKIENNAT 430 (729)
Q Consensus 410 ~i~~~~g~~l~~~~~~~~~~~ 430 (729)
.|+..+|+.|++.+..+...+
T Consensus 104 ~Is~~~G~~L~~~l~~g~~V~ 124 (127)
T cd02125 104 LITKAFGEKLKKAISNGEMVV 124 (127)
T ss_pred EECHHHHHHHHHHHhcCCeEE
Confidence 999999999999998776544
No 58
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.1e-07 Score=98.04 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=95.9
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
+..+|..+++|+++.|+|.|+|+...||+.... + ...+..++.... +.+.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~------------------------~~~~s~d~~~~~-----~~p~ 71 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y------------------------DPLGSYDVNRHD-----NDPE 71 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-c------------------------CcceeEeeecCC-----CCcc
Confidence 466999999999999999999999999998753 1 112222222111 1111
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn~ 255 (729)
+-.+......|||-||+-.+...... . -..|+++++++..++++.. ..++...+...... .-+++-+.
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~~~~--~------C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~sc 140 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARANNL--T------CGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSC 140 (431)
T ss_pred cccCCCCccccCCCCCcccccccCCC--c------CCCCcccCccccceeeeee---ecccceecccccCCCCCceeecC
Confidence 21223345789999999998875221 1 1369999999999988742 11122222222222 23799999
Q ss_pred ecCCCCCC----CCCcHHHHHHHHH-----HhCCcEEEEecCCCCCCCC
Q 004809 256 SLGLDGVD----LYEDPVAIATFAA-----IEKNIFVSTSAGNQGPFIG 295 (729)
Q Consensus 256 SlG~~~~~----~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~~ 295 (729)
|||..... -.......+.+.+ ..+|-+.+++.||.|....
T Consensus 141 sw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 141 SWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 99975421 1111222222222 2567889999999875543
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.37 E-value=2.6e-06 Score=80.09 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=68.2
Q ss_pred eeeEEEc---CCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce-ee-----c--cccccEEE
Q 004809 342 DFPIVFM---DECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE-FF-----L--QSSFPAVF 410 (729)
Q Consensus 342 ~~~lv~~---~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-~~-----~--~~~~p~~~ 410 (729)
..+++.. ..|.+.. .+++|||+|++||.|.|.+|..+++++||.++|++|+..... .. . +..+|++.
T Consensus 39 ~~~lv~~~~~~gC~~~~--~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~ 116 (139)
T cd02132 39 KTRAVLANPLDCCSPST--SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVM 116 (139)
T ss_pred EEEEEECCcccccCCCC--cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEE
Confidence 4455544 3587654 478999999999999999999999999999999999843211 11 1 15799999
Q ss_pred echhhHHHHHHHHhhcCCcE
Q 004809 411 MNSKTGDILKDYIKIENNAT 430 (729)
Q Consensus 411 i~~~~g~~l~~~~~~~~~~~ 430 (729)
|+..+|+.|++++..+...+
T Consensus 117 Is~~~G~~L~~~l~~g~~Vt 136 (139)
T cd02132 117 IPQSAGDALNKSLDQGKKVE 136 (139)
T ss_pred ecHHHHHHHHHHHHcCCcEE
Confidence 99999999999998765543
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.29 E-value=2.6e-06 Score=77.40 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=61.9
Q ss_pred CCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce---ee----cc-ccccEEEechhhHHHH
Q 004809 349 DECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE---FF----LQ-SSFPAVFMNSKTGDIL 419 (729)
Q Consensus 349 ~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~----~~-~~~p~~~i~~~~g~~l 419 (729)
..|.+. + .+++|||+|++||.|+|.+|..+++++||.++|++|+..+.. .. .. ..+|++.|+..+++.|
T Consensus 28 ~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 28 DACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 468665 4 889999999999999999999999999999999999844321 11 12 5799999999999999
Q ss_pred HHHHhh
Q 004809 420 KDYIKI 425 (729)
Q Consensus 420 ~~~~~~ 425 (729)
..++..
T Consensus 106 ~~l~~~ 111 (117)
T cd04813 106 SSLLPK 111 (117)
T ss_pred HHhccc
Confidence 888643
No 61
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.29 E-value=1e-05 Score=74.95 Aligned_cols=88 Identities=15% Similarity=0.020 Sum_probs=71.5
Q ss_pred CceeeEEEcCCccccccc-ccCCceEEEEccCCC--chhhHHHHHHhCCceEEEEEecCCCcee------e--cc-cccc
Q 004809 340 LIDFPIVFMDECLNLAEL-KKVGQKIVVCQDKND--SLSNQVDNIQNASVSGGVFISDFDGLEF------F--LQ-SSFP 407 (729)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~--~~-~~~p 407 (729)
..+.+++|.+.+....+. .+++|||+|++++.+ .+.+|..+++++||.|+|++|+..+... . .. ..+|
T Consensus 22 ~~~~~lV~~g~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP 101 (127)
T cd04819 22 EAKGEPVDAGYGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIP 101 (127)
T ss_pred CeeEEEEEeCCCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCC
Confidence 357889998877655555 679999999999998 8899999999999999999988444211 1 12 5799
Q ss_pred EEEechhhHHHHHHHHhhcC
Q 004809 408 AVFMNSKTGDILKDYIKIEN 427 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~ 427 (729)
++.|+..+|+.|.+.++.+.
T Consensus 102 ~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 102 AASVSGEDGLRLARVAERND 121 (127)
T ss_pred EEEEeHHHHHHHHHHHhcCC
Confidence 99999999999999987643
No 62
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.28 E-value=8.2e-06 Score=73.87 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=58.0
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEe--------CCC----------c-EEEEecCeEEEccCCeEEEEEEEEEecCCC--
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTP--------LKG----------F-NFSVDPDKLTFKGKYAKQSYKLRIEGPNQM-- 692 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~--------p~g----------~-~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~-- 692 (729)
...+++.+|+|.|+...+|+++... ..| . .+...|..++++ +|++++++|+|+.+...
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCCc
Confidence 3588999999999999999987651 111 1 567778888887 99999999999986422
Q ss_pred CCCCeeEEEEEEEEEcCCceEEEEEEE
Q 004809 693 DEETVVAFCYLSWIETGGKHVVKSPIV 719 (729)
Q Consensus 693 ~~~~~~~~G~l~~~~~~~~~~v~~P~~ 719 (729)
.++. +++|+|.+++.++.+.+++||+
T Consensus 87 ~~~~-~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGP-FYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-E-EEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCC-EEEEEEEEEcCCCCEEEEeeeC
Confidence 2144 9999999995445569999986
No 63
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.28 E-value=3e-06 Score=78.44 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=63.0
Q ss_pred Cccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-ee-ecc-ccccEEEechhhHHHHHHHHhh
Q 004809 350 ECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-EF-FLQ-SSFPAVFMNSKTGDILKDYIKI 425 (729)
Q Consensus 350 ~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~-~~~-~~~p~~~i~~~~g~~l~~~~~~ 425 (729)
.|.+...+ .+++|||+|++||.|.+.+|..+++++||.++|++|+..+. .. ..+ ..+|.+.+ ..+|+.|++.+..
T Consensus 43 gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~ 121 (129)
T cd02124 43 ACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALAA 121 (129)
T ss_pred cCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHhc
Confidence 59876656 68999999999999999999999999999999999984332 11 112 44666666 9999999999976
Q ss_pred cCCcE
Q 004809 426 ENNAT 430 (729)
Q Consensus 426 ~~~~~ 430 (729)
+...+
T Consensus 122 G~~vt 126 (129)
T cd02124 122 GSNVT 126 (129)
T ss_pred CCeEE
Confidence 65433
No 64
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.3e-05 Score=95.60 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=58.0
Q ss_pred ceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcC-CcEEEeecCCCC--CC-C--CCcHHHHHHHHHHhCCcEEEE
Q 004809 212 TALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDG-VDVLSMSLGLDG--VD-L--YEDPVAIATFAAIEKNIFVST 285 (729)
Q Consensus 212 ~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~g-vdVIn~SlG~~~--~~-~--~~~~~~~a~~~a~~~Gi~vV~ 285 (729)
...-+||+|+|..|-+ +. .....+..|+.+....= --+|-+||+... .+ . +-+.+..-...|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3568999999999877 22 22222223333222211 133445666532 11 1 334455555678899999999
Q ss_pred ecCCCCCCCC--------CcCCCCCceEEEcc
Q 004809 286 SAGNQGPFIG--------TLHNGIPWVMTVAA 309 (729)
Q Consensus 286 AAGN~G~~~~--------t~~~~~p~vitVgA 309 (729)
|+|.+|.... ..++.+|++++||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999986553 24468899999997
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.12 E-value=8.7e-06 Score=77.85 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=64.5
Q ss_pred Ccccccc---c-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCcee--ec------cccccEEEechhhHH
Q 004809 350 ECLNLAE---L-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF--FL------QSSFPAVFMNSKTGD 417 (729)
Q Consensus 350 ~c~~~~~---~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~------~~~~p~~~i~~~~g~ 417 (729)
.|.+... . ..+.|||+|++||.|+|.+|..+++++||.++|++|+..+... .. +..+|++.|+..+|+
T Consensus 52 gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~ 131 (153)
T cd02123 52 ACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTGE 131 (153)
T ss_pred cCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHHH
Confidence 5876554 3 6789999999999999999999999999999999998433211 11 147999999999999
Q ss_pred HHHHHHhhcCC
Q 004809 418 ILKDYIKIENN 428 (729)
Q Consensus 418 ~l~~~~~~~~~ 428 (729)
.|+.++...+.
T Consensus 132 ~L~~~l~~~~~ 142 (153)
T cd02123 132 ILKKYASYEKG 142 (153)
T ss_pred HHHHHHhcCCc
Confidence 99999876544
No 66
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.39 E-value=0.00073 Score=65.90 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=66.4
Q ss_pred eeeEEEcCCccccccc------ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC--CCc---------------
Q 004809 342 DFPIVFMDECLNLAEL------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF--DGL--------------- 398 (729)
Q Consensus 342 ~~~lv~~~~c~~~~~~------~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~--~~~--------------- 398 (729)
+-++||...|...++. .+++|||+|++++.|.+.+|..+++++||+|+|+|++. ...
T Consensus 30 ~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~ 109 (183)
T cd02128 30 TGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGT 109 (183)
T ss_pred EEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccC
Confidence 6788998777554442 47999999999999999999999999999999999882 111
Q ss_pred --eee------------c----c-ccccEEEechhhHHHHHHHHhhc
Q 004809 399 --EFF------------L----Q-SSFPAVFMNSKTGDILKDYIKIE 426 (729)
Q Consensus 399 --~~~------------~----~-~~~p~~~i~~~~g~~l~~~~~~~ 426 (729)
.+. . . ..||++.|+..+++.|++.+.-.
T Consensus 110 GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 110 GDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred CCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 000 0 1 35889999999999999988543
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.29 E-value=0.0008 Score=62.90 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred ccCCceEEEEccCCC------chhhH-------HHHHHhCCceEEEEEecCC--------Cceee-cc-ccccEEEechh
Q 004809 358 KKVGQKIVVCQDKND------SLSNQ-------VDNIQNASVSGGVFISDFD--------GLEFF-LQ-SSFPAVFMNSK 414 (729)
Q Consensus 358 ~~~~gkiv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~~~~~--------~~~~~-~~-~~~p~~~i~~~ 414 (729)
.+++||||++.++.| .+..| ...++++||.|+|++|... |.... .. ..+|++.|+..
T Consensus 36 ~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~e 115 (134)
T cd04815 36 GAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVE 115 (134)
T ss_pred hhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechh
Confidence 579999999999999 88888 6999999999999998621 11111 11 56999999999
Q ss_pred hHHHHHHHHhhcCCcE
Q 004809 415 TGDILKDYIKIENNAT 430 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~ 430 (729)
++..|...++.+...+
T Consensus 116 d~~~L~r~l~~g~~v~ 131 (134)
T cd04815 116 DADMLERLAARGKPIR 131 (134)
T ss_pred cHHHHHHHHhCCCCeE
Confidence 9999999988765443
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.54 E-value=0.0059 Score=57.30 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=45.7
Q ss_pred CceeeEEEcCC------ccccccc-ccCCceEEEEccCCC------------------chhhHHHHHHhCCceEEEEEec
Q 004809 340 LIDFPIVFMDE------CLNLAEL-KKVGQKIVVCQDKND------------------SLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 340 ~~~~~lv~~~~------c~~~~~~-~~~~gkiv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
....++||.+. |...++. .+++|||||+.++.| .+..|..+++++||.|+|++++
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 34577887753 5555665 799999999999877 4668999999999999999998
Q ss_pred CC
Q 004809 395 FD 396 (729)
Q Consensus 395 ~~ 396 (729)
..
T Consensus 99 ~~ 100 (142)
T cd04814 99 LA 100 (142)
T ss_pred CC
Confidence 43
No 69
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=96.11 E-value=0.01 Score=60.01 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=47.9
Q ss_pred ceeeEEEcCCccccccc------ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDECLNLAEL------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~------~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
.+.++||...|....+. .+++|||||++++.+.+..|..+++++||+|+|++++
T Consensus 45 v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 45 VTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred ceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeC
Confidence 46789999988776543 5799999999999999899999999999999999998
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.07 E-value=0.024 Score=52.93 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=43.8
Q ss_pred ceeeEEEcCC------ccccccc-ccCCceEEEEccCCCc------------hhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDE------CLNLAEL-KKVGQKIVVCQDKNDS------------LSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~------c~~~~~~-~~~~gkiv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
.+-++||.+. |...++. .+++|||||+.++.+. +..|..++.++||.|+|++++
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 4567777764 4445554 7899999999998763 668999999999999999998
No 71
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.03 E-value=0.015 Score=63.39 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=59.6
Q ss_pred ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC-------c-eeeccccccEEEechhhHHHHHHHHhhcCCc
Q 004809 358 KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG-------L-EFFLQSSFPAVFMNSKTGDILKDYIKIENNA 429 (729)
Q Consensus 358 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~-------~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 429 (729)
.++.||+++..||.|.|.+|...++++||.++++.|+... . +...+..||++.+.+++++.+.....++.+.
T Consensus 92 ~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V 171 (541)
T KOG2442|consen 92 SKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNV 171 (541)
T ss_pred ccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeE
Confidence 6789999999999999999999999999999999998221 1 1122378999999999999998765555444
Q ss_pred E
Q 004809 430 T 430 (729)
Q Consensus 430 ~ 430 (729)
+
T Consensus 172 ~ 172 (541)
T KOG2442|consen 172 E 172 (541)
T ss_pred E
Confidence 3
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.98 E-value=0.18 Score=44.42 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=59.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEEEcCCceE
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHV 713 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~~~~~~~~ 713 (729)
...+.+.+|+|.|.....|++.......-.++++|..-.+. +|++.+++|+|..... . +.+.+.|... -....
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~~-~---g~~~~~l~i~--~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTKP-L---GDYEGSLVIT--TEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCCC-C---ceEEEEEEEE--ECCeE
Confidence 35667788999999999999876442345677777765565 8999999999995432 2 2578989887 44457
Q ss_pred EEEEEEEE
Q 004809 714 VKSPIVVT 721 (729)
Q Consensus 714 v~~P~~~~ 721 (729)
+.+|+-+.
T Consensus 93 ~~i~v~a~ 100 (102)
T PF14874_consen 93 FEIPVKAE 100 (102)
T ss_pred EEEEEEEE
Confidence 78887654
No 73
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.97 E-value=0.031 Score=53.07 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred eeeEEEcCC------ccccccc-ccCCceEEEEccCC------------------CchhhHHHHHHhCCceEEEEEec
Q 004809 342 DFPIVFMDE------CLNLAEL-KKVGQKIVVCQDKN------------------DSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 342 ~~~lv~~~~------c~~~~~~-~~~~gkiv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
+-++||.+. |....+. .+++|||||+.++. |.+..|..++++.||.|+|++++
T Consensus 21 tg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 21 TAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred eEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 457777764 4434444 78999999998763 56778999999999999999998
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.91 E-value=0.012 Score=55.14 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=43.7
Q ss_pred eeeEEEcCCccccccc-----ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec
Q 004809 342 DFPIVFMDECLNLAEL-----KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 342 ~~~lv~~~~c~~~~~~-----~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
+-++||..-+...++. -+++|||+|++.|...+..|..++++.||.|+|||.+
T Consensus 16 tg~~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsD 73 (153)
T cd02131 16 QAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVD 73 (153)
T ss_pred EEEEEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecC
Confidence 4567776544433322 5699999999999999999999999999999999998
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.24 E-value=0.02 Score=53.21 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=71.9
Q ss_pred eeeEEEcC---CcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec-CCCcee------ec----c-ccc
Q 004809 342 DFPIVFMD---ECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDGLEF------FL----Q-SSF 406 (729)
Q Consensus 342 ~~~lv~~~---~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~-~~~~~~------~~----~-~~~ 406 (729)
.+++|..+ .|.+....-...|.|.|.+||+|+|..|..+++++||..+|+..+ ...++. +. + ..+
T Consensus 65 ~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~Ani 144 (193)
T KOG3920|consen 65 NLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANI 144 (193)
T ss_pred CcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCC
Confidence 45666654 588776667789999999999999999999999999999999887 332222 11 2 789
Q ss_pred cEEEechhhHHHHHHHHhhcCCcEEEEEec
Q 004809 407 PAVFMNSKTGDILKDYIKIENNATATIQFQ 436 (729)
Q Consensus 407 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 436 (729)
|++.+-..+|..+..-++.-..+-+.|...
T Consensus 145 Pa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 145 PAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred ceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 999999888887776666655555555443
No 76
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.21 E-value=0.064 Score=44.93 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=38.3
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCC
Q 004809 634 SVQEFQRTVTNVGEGV-STYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMD 693 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~-~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 693 (729)
...+++.+|+|.|... ...++++..|+|-.+...|..+..-++|++++++++|+++....
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 4788999999999765 45888899999999888888776556999999999999876444
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.18 Score=53.93 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=55.4
Q ss_pred ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec-CCCceeec----c-ccccEEEechhhHHHHHHHHh
Q 004809 358 KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDGLEFFL----Q-SSFPAVFMNSKTGDILKDYIK 424 (729)
Q Consensus 358 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~-~~~~~~~~----~-~~~p~~~i~~~~g~~l~~~~~ 424 (729)
......++|+.||+|+|.+|..+++++|..++|++|+ ........ + ..++++.++...|+.+.+|..
T Consensus 76 ~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~ 148 (348)
T KOG4628|consen 76 TRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAG 148 (348)
T ss_pred CCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhc
Confidence 5567789999999999999999999999999999998 33322221 2 678999999999999998854
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.38 E-value=3.1 Score=37.69 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=40.4
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCC
Q 004809 635 VQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQM 692 (729)
Q Consensus 635 ~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 692 (729)
.-..+.+|+|..+.+.+|++++..++|+++......+++. +|++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECHHH
Confidence 4457788999999999999999998899996655788886 89999999999987643
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=90.37 E-value=0.49 Score=45.36 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=39.7
Q ss_pred ceeeEEEcCCcccc------ccc-ccCCceEEEEccCCCc-------------------hhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDECLNL------AEL-KKVGQKIVVCQDKNDS-------------------LSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~c~~~------~~~-~~~~gkiv~~~~g~~~-------------------~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
...++||.+-+... ++. .+++||||++.++... ...|...+++.||.|+|++..
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 45677777654332 233 7899999999876442 224899999999999999977
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.37 E-value=5.9 Score=43.91 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=58.1
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEE
Q 004809 634 SVQEFQRTVTNVGEGVST-YTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWI 706 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~t-Y~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~ 706 (729)
...++...+.|.|+.+.| -++++..|.|-++.|.|.++-.-++|+.+++++|++++....++. ++=.|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGd--Y~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGD--YRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCc--EEEEEEEe
Confidence 467888889999998766 789999999999999999876667999999999999987666343 55555555
No 81
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=84.70 E-value=19 Score=32.92 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=49.4
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEeC----CC--------------cEEE-----EecCeEEEccCCeEEEEEEEEEecC
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTPL----KG--------------FNFS-----VDPDKLTFKGKYAKQSYKLRIEGPN 690 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~p----~g--------------~~v~-----v~p~~l~~~~~~~~~~~~vt~~~~~ 690 (729)
.+.+++.+|+|.++...+|.+.+... .| +... -.|..++++ ++|++.++++++.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~-~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLP-PNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEEC-CCCEEEEEEEEEcCC
Confidence 57889999999999999999887421 11 0000 114446675 899999999999887
Q ss_pred CCCCCCeeEEEEEEEE
Q 004809 691 QMDEETVVAFCYLSWI 706 (729)
Q Consensus 691 ~~~~~~~~~~G~l~~~ 706 (729)
..- .. .+-|.|.+.
T Consensus 106 ~~f-~G-~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAF-DG-IILGGIYFS 119 (121)
T ss_pred CCc-CC-EEEeeEEEE
Confidence 544 22 677888776
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=1.5 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.8
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCC
Q 004809 104 SKFGKDIIIGVVDTGVWPESESYN 127 (729)
Q Consensus 104 ~~~G~gvvVgVIDtGid~~Hp~f~ 127 (729)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999988775
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.12 E-value=17 Score=40.51 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=48.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEE-eCCCcEEEEecC-----eEEEccCCeEEEEEEEEEecCCCCCCC
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVT-PLKGFNFSVDPD-----KLTFKGKYAKQSYKLRIEGPNQMDEET 696 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~-~p~g~~v~v~p~-----~l~~~~~~~~~~~~vt~~~~~~~~~~~ 696 (729)
.+..++.++.|.|..+.+|..++. .|+|.....+-. ++.+. +||++.|+|.+..+++...+.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~-~gE~kdvtleV~ps~na~pG~ 351 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLK-PGEEKDVTLEVYPSLNATPGT 351 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEec-CCCceEEEEEEecCCCCCCCc
Confidence 367888999999999999999999 788876655433 33444 899999999999887655344
No 84
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=71.86 E-value=52 Score=29.69 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=40.8
Q ss_pred EEEEEEEEecCCCCeEEEEEEEe---CCC----cEEEEecCeEEEccCCeEEEEEEEEEecC
Q 004809 636 QEFQRTVTNVGEGVSTYTASVTP---LKG----FNFSVDPDKLTFKGKYAKQSYKLRIEGPN 690 (729)
Q Consensus 636 ~~~~rtvtnvg~~~~tY~~~v~~---p~g----~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 690 (729)
.+.+.+|+|.++.+..+.+.+.. ..+ -.+-|+|..+.+. +|+++.+.| +....
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~-pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLE-PGESQTVRV-YRGSK 75 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEE-TTEEEEEEE-EECSG
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeC-CCCcEEEEE-EecCC
Confidence 35677899999988888888875 111 2577999999997 899999999 66443
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=63.45 E-value=29 Score=39.05 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=47.0
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecC
Q 004809 635 VQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPN 690 (729)
Q Consensus 635 ~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 690 (729)
.-..+..+.|.+..+.+|+++++.+++.++...++.+++. ++++.++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~-~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVK-AGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEEC-CCCEEEEEEEEEech
Confidence 4567788999999999999999999999888765577886 899999999998864
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=61.44 E-value=65 Score=28.13 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=38.6
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEec
Q 004809 635 VQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGP 689 (729)
Q Consensus 635 ~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~ 689 (729)
......+|+|.++...-|++....|..+ .|.|..-.+. ++++..+.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~-p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIE-PGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEEC-CCCEEEEEEEEEec
Confidence 4566779999999988899988888755 5679877775 89999999999864
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=50.14 E-value=1.7e+02 Score=27.48 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEE
Q 004809 635 VQEFQRTVTNVGEGV-STYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWI 706 (729)
Q Consensus 635 ~~~~~rtvtnvg~~~-~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~ 706 (729)
...+...|-|-.+.. ..-+++.....++++--.|..+++. +++.++++.+++.... ..+.+||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~-P~~~~~i~~~iKVsSt---etGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLA-PHGFARIKATIKVSST---ETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeC-CCcEEEEEEEEEEEec---cCCEEEEEEEEe
Confidence 344455566665432 3356666677788888889999986 8999999999988642 234899999986
No 88
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.14 E-value=1.1e+02 Score=25.76 Aligned_cols=53 Identities=23% Similarity=0.153 Sum_probs=26.3
Q ss_pred EEEEEEEEecCCCCeE--------EEEEEEeCCCcEEEE---------ecCeEEEccCCeEEEEEEEEEec
Q 004809 636 QEFQRTVTNVGEGVST--------YTASVTPLKGFNFSV---------DPDKLTFKGKYAKQSYKLRIEGP 689 (729)
Q Consensus 636 ~~~~rtvtnvg~~~~t--------Y~~~v~~p~g~~v~v---------~p~~l~~~~~~~~~~~~vt~~~~ 689 (729)
..++.+|+|.++.+.+ |.+.|..+.|-.|-- --...++. +||+++|+.++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~-pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLE-PGESLTYEETWDLK 71 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS-
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEEC-CCCEEEEEEEECCC
Confidence 3466778888876433 445555455444421 12233444 88999988888654
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.78 E-value=1.5e+02 Score=25.11 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=31.4
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEeCCCcEEEEecCeE-EEccCCeEEEEEEEEEec
Q 004809 634 SVQEFQRTVTNVGEGV-STYTASVTPLKGFNFSVDPDKL-TFKGKYAKQSYKLRIEGP 689 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~-~tY~~~v~~p~g~~v~v~p~~l-~~~~~~~~~~~~vt~~~~ 689 (729)
...+++.+|+|.|... ..+.+.+... |..+. -..+ .+. +|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~--~~~i~~L~-~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSVS--TVTIPSLA-PGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEEE--EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Cceec--cEEECCcC-CCcEEEEEEEEEeC
Confidence 4788889999999874 5566666433 23321 1112 444 78998888888775
No 90
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=37.02 E-value=1.6e+02 Score=26.22 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=34.5
Q ss_pred eecc-CCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeecCC
Q 004809 214 LGTA-PLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGL 259 (729)
Q Consensus 214 ~GvA-P~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~SlG~ 259 (729)
.... ++++|+.+-- ..||....++.-+++..+.|+|+|-+|--.
T Consensus 31 ~~y~~~~~elvgf~~--CgGCpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 31 ARYDDEDVELVGFFT--CGGCPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred ccCCCCCeEEEEEee--CCCCChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 3444 4678887644 456889999999999999999999998765
No 91
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.35 E-value=34 Score=24.74 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=18.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 004809 514 AALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 514 aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
+--|++.+|+|++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 34678999999999999999654
No 92
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=35.93 E-value=1.2e+02 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=28.2
Q ss_pred EEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEEE
Q 004809 663 NFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIE 707 (729)
Q Consensus 663 ~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~~ 707 (729)
.+++.|..+++. .|+++.|++++.... .. - ...++|+.
T Consensus 4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~~----~~-~-~~~v~w~S 41 (81)
T smart00635 4 SVTVTPTTASVK-KGLTLQLTATVTPSS----AK-V-TGKVTWTS 41 (81)
T ss_pred EEEEeCCeeEEe-CCCeEEEEEEEECCC----CC-c-cceEEEEE
Confidence 678899998887 899999999976432 12 2 56788884
No 93
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=35.72 E-value=1.4e+02 Score=21.88 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=23.7
Q ss_pred EEEEecCCCCeEEEEEEEeC-CCcEEEEecCeEEEccCCeEEEEEEEE
Q 004809 640 RTVTNVGEGVSTYTASVTPL-KGFNFSVDPDKLTFKGKYAKQSYKLRI 686 (729)
Q Consensus 640 rtvtnvg~~~~tY~~~v~~p-~g~~v~v~p~~l~~~~~~~~~~~~vt~ 686 (729)
.+++|.|+.+..-+ .++.. .=..++.... .+ .+||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~~~~~~--~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTAEYSKK--PI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEeeCCcc--eE-CCCCEEEEEEEC
Confidence 46889998765432 22222 2233333222 34 489988888764
No 94
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=28.49 E-value=26 Score=16.20 Aligned_cols=6 Identities=33% Similarity=0.795 Sum_probs=4.2
Q ss_pred cccCCC
Q 004809 450 SYSSRG 455 (729)
Q Consensus 450 ~FSS~G 455 (729)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 95
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=25.58 E-value=3.2e+02 Score=29.91 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=27.9
Q ss_pred eeEEEEEEEEecCCCCeE----EEEEEE--eC----------C----CcEEEEecCeEEEccCCeEEEEEEEEEe
Q 004809 634 SVQEFQRTVTNVGEGVST----YTASVT--PL----------K----GFNFSVDPDKLTFKGKYAKQSYKLRIEG 688 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~t----Y~~~v~--~p----------~----g~~v~v~p~~l~~~~~~~~~~~~vt~~~ 688 (729)
.+.+++.+|||.|+.+.. .++.++ .| + .--++|+|+.- . .+||+++++|+.+-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-c-CCCceEEEEEEeeh
Confidence 578899999999998633 122222 11 1 00134455421 2 48999999998863
No 96
>PRK15019 CsdA-binding activator; Provisional
Probab=24.80 E-value=68 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=27.6
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 004809 498 NLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRS 531 (729)
Q Consensus 498 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~ 531 (729)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 57999999999999999999999876
No 97
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.24 E-value=4.2e+02 Score=26.05 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=42.1
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEe----CCCcEEEEec---CeEEEccCCeEEEEEEEEEecCCCCCCCeeEEE--EEE
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTP----LKGFNFSVDP---DKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFC--YLS 704 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~----p~g~~v~v~p---~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G--~l~ 704 (729)
...+++.+|.|+|+. .-|.+++.. ++.+++ |+. .++..-++|+..+..+++++.. . +. +.++ .++
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~l-vsG~~s~~~~~i~pg~~vsh~~vv~p~~--~-G~-f~~~~a~Vt 111 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFEL-VSGSLSASWERIPPGENVSHSYVVRPKK--S-GY-FNFTPAVVT 111 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEe-ccCceEEEEEEECCCCeEEEEEEEeeee--e-EE-EEccCEEEE
Confidence 478999999999987 448888865 234443 221 1122225888888888888753 2 33 4444 455
Q ss_pred EEE
Q 004809 705 WIE 707 (729)
Q Consensus 705 ~~~ 707 (729)
.++
T Consensus 112 Y~~ 114 (181)
T PF05753_consen 112 YRD 114 (181)
T ss_pred EEC
Confidence 553
No 98
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=23.88 E-value=73 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=28.2
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 004809 498 NLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSA 532 (729)
Q Consensus 498 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~ 532 (729)
..+.|.| =|+.|-|++|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 489999999999999999999998743
No 99
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.29 E-value=66 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=22.4
Q ss_pred eeeccccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 004809 498 NLQSGTSMACPQAAGIAA------LLRGAHPEWSPAAIRSAIM 534 (729)
Q Consensus 498 ~~~sGTSMAaP~VAG~aA------Ll~q~~P~~sp~~Ik~~L~ 534 (729)
-.+.||=+..=.|....+ -|.+.||.+++++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 356677766555554432 3456799999999999984
No 100
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=21.39 E-value=71 Score=22.01 Aligned_cols=13 Identities=54% Similarity=0.695 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHH
Q 004809 505 MACPQAAGIAALL 517 (729)
Q Consensus 505 MAaP~VAG~aALl 517 (729)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 101
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.03 E-value=1.3e+02 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 513 IAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 513 ~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456789999999999999999854
No 102
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=20.39 E-value=95 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=27.6
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 004809 498 NLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRS 531 (729)
Q Consensus 498 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~ 531 (729)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444556 58999999999999999999999875
Done!