Query 004811
Match_columns 729
No_of_seqs 1600 out of 3106
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 13:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.5E-45 7.5E-50 363.6 25.5 426 202-717 63-488 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.9E-43 4E-48 351.4 30.2 420 208-717 103-522 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-31 3.2E-36 298.4 48.7 421 220-717 126-574 (615)
4 KOG1840 Kinesin light chain [C 100.0 1.8E-30 3.8E-35 268.3 48.0 421 217-697 84-505 (508)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-31 1.2E-35 312.2 43.1 424 202-717 446-869 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-30 6.4E-35 305.9 44.7 442 196-717 338-835 (899)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.9E-30 4.1E-35 289.5 39.2 414 192-673 132-573 (615)
8 PRK11447 cellulose synthase su 100.0 1.4E-29 3E-34 300.5 47.5 455 193-717 118-703 (1157)
9 PRK11447 cellulose synthase su 100.0 4.4E-29 9.5E-34 296.3 48.7 448 200-713 160-739 (1157)
10 KOG2002 TPR-containing nuclear 100.0 4.9E-29 1.1E-33 262.3 39.9 460 208-725 257-758 (1018)
11 KOG0547 Translocase of outer m 100.0 1.6E-28 3.4E-33 239.5 35.7 397 219-674 113-569 (606)
12 KOG1840 Kinesin light chain [C 100.0 7.8E-27 1.7E-31 241.4 41.5 291 423-716 190-481 (508)
13 KOG2002 TPR-containing nuclear 100.0 1.6E-26 3.4E-31 243.5 40.7 433 208-713 151-592 (1018)
14 PRK10049 pgaA outer membrane p 100.0 2.9E-25 6.2E-30 252.1 44.0 436 215-717 9-459 (765)
15 PRK15174 Vi polysaccharide exp 100.0 3.4E-25 7.4E-30 246.1 43.4 362 268-703 45-410 (656)
16 PRK15174 Vi polysaccharide exp 100.0 1.7E-25 3.6E-30 248.5 39.8 336 311-717 45-384 (656)
17 KOG0547 Translocase of outer m 100.0 6.7E-25 1.5E-29 214.3 34.9 392 265-716 115-568 (606)
18 PRK09782 bacteriophage N4 rece 99.9 3.6E-24 7.8E-29 242.5 43.4 459 192-717 49-709 (987)
19 PRK10049 pgaA outer membrane p 99.9 1.2E-23 2.5E-28 239.1 38.8 414 198-671 26-456 (765)
20 KOG2003 TPR repeat-containing 99.9 9.4E-24 2E-28 203.9 25.4 422 221-717 201-692 (840)
21 PRK14574 hmsH outer membrane p 99.9 2.4E-20 5.2E-25 207.4 47.2 438 212-717 25-516 (822)
22 PRK09782 bacteriophage N4 rece 99.9 1.9E-21 4.2E-26 220.5 38.0 361 262-700 373-760 (987)
23 KOG1126 DNA-binding cell divis 99.9 8.6E-23 1.9E-27 208.3 23.8 303 352-717 319-623 (638)
24 KOG0548 Molecular co-chaperone 99.9 1.8E-21 3.8E-26 193.9 32.4 412 223-717 4-458 (539)
25 KOG2003 TPR repeat-containing 99.9 2.5E-22 5.5E-27 194.1 25.5 409 215-699 231-709 (840)
26 PRK11788 tetratricopeptide rep 99.9 8.2E-21 1.8E-25 201.6 38.2 314 350-717 35-354 (389)
27 KOG1130 Predicted G-alpha GTPa 99.9 4.8E-22 1E-26 190.1 25.4 330 270-616 22-371 (639)
28 KOG1155 Anaphase-promoting com 99.9 2.5E-20 5.5E-25 181.5 35.2 375 265-717 164-539 (559)
29 KOG1173 Anaphase-promoting com 99.9 2.4E-20 5.2E-25 186.4 35.3 430 221-717 49-521 (611)
30 KOG1130 Predicted G-alpha GTPa 99.9 1.2E-21 2.7E-26 187.3 24.8 330 357-702 24-373 (639)
31 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.9E-25 198.9 36.7 308 310-670 37-346 (389)
32 KOG1155 Anaphase-promoting com 99.9 1.1E-19 2.5E-24 177.0 37.9 374 219-670 162-535 (559)
33 KOG1126 DNA-binding cell divis 99.9 2.7E-21 5.9E-26 197.4 25.1 300 310-671 319-620 (638)
34 PLN03081 pentatricopeptide (PP 99.9 1.4E-19 3E-24 205.4 38.0 432 196-714 96-557 (697)
35 KOG4162 Predicted calmodulin-b 99.9 1.3E-18 2.8E-23 180.3 39.9 434 219-717 321-786 (799)
36 PLN03218 maturation of RBCL 1; 99.9 1.4E-17 2.9E-22 190.7 51.1 418 217-714 366-783 (1060)
37 KOG2076 RNA polymerase III tra 99.9 5.3E-19 1.1E-23 186.2 36.1 393 265-713 139-554 (895)
38 KOG1173 Anaphase-promoting com 99.9 2.6E-19 5.6E-24 179.1 31.0 418 220-695 81-534 (611)
39 PRK14574 hmsH outer membrane p 99.9 2.2E-18 4.7E-23 191.8 40.8 418 193-672 40-514 (822)
40 KOG2076 RNA polymerase III tra 99.9 1.1E-18 2.3E-23 184.0 33.8 353 308-715 139-513 (895)
41 PLN03218 maturation of RBCL 1; 99.9 1.9E-17 4E-22 189.6 45.0 375 224-671 409-783 (1060)
42 PLN03081 pentatricopeptide (PP 99.8 2.3E-18 5E-23 195.4 33.3 369 221-670 158-556 (697)
43 KOG1174 Anaphase-promoting com 99.8 9.2E-17 2E-21 154.5 37.8 424 219-717 41-503 (564)
44 KOG0624 dsRNA-activated protei 99.8 2.6E-17 5.7E-22 154.4 32.9 333 260-671 33-370 (504)
45 PLN03077 Protein ECB2; Provisi 99.8 1.7E-17 3.7E-22 193.0 36.6 150 196-376 231-380 (857)
46 KOG0548 Molecular co-chaperone 99.8 3.4E-17 7.3E-22 163.7 32.8 415 198-697 13-473 (539)
47 PRK04841 transcriptional regul 99.8 8.8E-16 1.9E-20 181.3 50.1 420 221-673 341-762 (903)
48 PRK04841 transcriptional regul 99.8 7.7E-15 1.7E-19 173.3 49.9 423 264-717 340-763 (903)
49 KOG1129 TPR repeat-containing 99.8 1.4E-17 3E-22 155.3 20.2 245 433-724 224-470 (478)
50 KOG0495 HAT repeat protein [RN 99.8 6.8E-15 1.5E-19 149.5 41.0 427 212-717 401-883 (913)
51 PLN03077 Protein ECB2; Provisi 99.8 3.1E-16 6.8E-21 182.5 36.6 426 195-713 261-719 (857)
52 KOG0624 dsRNA-activated protei 99.8 2.2E-15 4.7E-20 141.7 34.1 339 215-649 32-382 (504)
53 KOG0495 HAT repeat protein [RN 99.8 7E-16 1.5E-20 156.5 32.4 375 211-671 506-880 (913)
54 KOG1129 TPR repeat-containing 99.8 1.2E-17 2.7E-22 155.6 18.2 282 360-693 189-472 (478)
55 KOG1156 N-terminal acetyltrans 99.8 1.2E-14 2.7E-19 148.2 40.6 421 221-711 7-465 (700)
56 KOG4162 Predicted calmodulin-b 99.8 4.2E-15 9.1E-20 154.5 37.1 440 224-725 287-762 (799)
57 KOG1174 Anaphase-promoting com 99.8 4.5E-15 9.8E-20 143.0 33.1 289 346-697 228-518 (564)
58 PF13429 TPR_15: Tetratricopep 99.7 1.5E-17 3.3E-22 167.0 13.6 266 270-588 13-278 (280)
59 PF13429 TPR_15: Tetratricopep 99.7 2E-17 4.4E-22 166.1 13.9 266 396-714 12-277 (280)
60 PRK12370 invasion protein regu 99.7 3.3E-15 7.2E-20 163.9 31.5 254 406-716 275-537 (553)
61 KOG1941 Acetylcholine receptor 99.7 2.2E-14 4.9E-19 135.9 31.8 345 222-588 7-361 (518)
62 KOG1127 TPR repeat-containing 99.7 6.2E-15 1.3E-19 156.5 31.2 437 210-714 481-996 (1238)
63 PRK12370 invasion protein regu 99.7 2.1E-15 4.6E-20 165.4 28.2 263 224-545 261-534 (553)
64 KOG1941 Acetylcholine receptor 99.7 2.4E-14 5.3E-19 135.7 31.1 345 268-629 9-360 (518)
65 COG3063 PilF Tfp pilus assembl 99.7 1.4E-15 3E-20 136.3 21.5 209 470-717 31-239 (250)
66 TIGR00540 hemY_coli hemY prote 99.7 3.7E-14 8E-19 149.9 36.1 314 350-714 84-399 (409)
67 KOG1915 Cell cycle control pro 99.7 5.9E-13 1.3E-17 130.8 41.0 432 219-717 71-539 (677)
68 TIGR00540 hemY_coli hemY prote 99.7 1.4E-14 3E-19 153.1 32.7 318 221-593 84-405 (409)
69 TIGR02521 type_IV_pilW type IV 99.7 2.7E-15 5.9E-20 146.8 25.6 208 470-716 27-234 (234)
70 KOG1156 N-terminal acetyltrans 99.7 2.9E-13 6.4E-18 138.3 40.3 443 210-714 30-511 (700)
71 PRK11189 lipoprotein NlpI; Pro 99.7 2.2E-15 4.9E-20 151.3 25.0 247 406-699 40-286 (296)
72 COG3063 PilF Tfp pilus assembl 99.7 3.1E-15 6.7E-20 134.0 21.6 208 306-550 33-240 (250)
73 KOG1127 TPR repeat-containing 99.7 1.9E-14 4.2E-19 152.8 31.2 374 278-717 471-882 (1238)
74 KOG2376 Signal recognition par 99.7 8.9E-13 1.9E-17 133.4 41.5 429 222-717 13-490 (652)
75 TIGR02521 type_IV_pilW type IV 99.7 9.2E-15 2E-19 143.1 25.6 207 427-671 26-232 (234)
76 COG2956 Predicted N-acetylgluc 99.7 1.9E-13 4E-18 128.2 32.0 283 356-694 41-325 (389)
77 PRK10747 putative protoheme IX 99.7 1.5E-13 3.3E-18 144.4 35.7 303 350-715 84-391 (398)
78 cd05804 StaR_like StaR_like; a 99.7 1.1E-13 2.5E-18 144.7 34.7 334 308-677 6-342 (355)
79 KOG1125 TPR repeat-containing 99.7 2E-15 4.4E-20 152.3 19.8 269 270-577 290-561 (579)
80 COG2956 Predicted N-acetylgluc 99.7 2.1E-13 4.5E-18 128.0 31.5 274 227-549 41-314 (389)
81 cd05804 StaR_like StaR_like; a 99.7 3.4E-14 7.3E-19 148.8 30.0 339 217-595 2-344 (355)
82 PRK10747 putative protoheme IX 99.7 4.3E-14 9.4E-19 148.5 30.4 308 221-588 84-391 (398)
83 PRK11189 lipoprotein NlpI; Pro 99.7 1.8E-14 3.8E-19 144.9 25.7 221 238-503 42-265 (296)
84 KOG0550 Molecular chaperone (D 99.7 1E-14 2.2E-19 141.0 22.2 290 305-629 46-350 (486)
85 KOG0550 Molecular chaperone (D 99.7 1.4E-14 3.1E-19 140.0 23.2 291 219-549 47-353 (486)
86 KOG2376 Signal recognition par 99.7 2.9E-12 6.4E-17 129.7 40.1 460 192-704 17-511 (652)
87 KOG1125 TPR repeat-containing 99.7 6.1E-15 1.3E-19 148.9 20.5 270 396-704 289-562 (579)
88 KOG3785 Uncharacterized conser 99.6 7.3E-13 1.6E-17 125.4 30.0 402 232-721 33-498 (557)
89 KOG1915 Cell cycle control pro 99.6 1.4E-11 3E-16 121.2 38.8 390 265-714 73-500 (677)
90 PF12569 NARP1: NMDA receptor- 99.6 2.4E-11 5.2E-16 128.6 41.3 298 266-597 5-344 (517)
91 KOG3785 Uncharacterized conser 99.6 1.1E-11 2.5E-16 117.4 32.7 391 197-668 32-487 (557)
92 KOG2300 Uncharacterized conser 99.5 2.3E-09 5E-14 106.3 42.6 458 220-704 45-547 (629)
93 PLN02789 farnesyltranstransfer 99.5 6.5E-12 1.4E-16 125.7 25.6 231 437-716 42-304 (320)
94 TIGR03302 OM_YfiO outer membra 99.5 4.6E-12 9.9E-17 123.9 20.9 182 513-717 29-235 (235)
95 PF14938 SNAP: Soluble NSF att 99.5 6.4E-12 1.4E-16 125.4 21.4 229 392-629 35-266 (282)
96 PF12569 NARP1: NMDA receptor- 99.5 2E-10 4.3E-15 121.7 33.3 291 310-635 6-340 (517)
97 KOG2047 mRNA splicing factor [ 99.5 6.5E-09 1.4E-13 106.7 42.3 450 221-715 102-688 (835)
98 TIGR03302 OM_YfiO outer membra 99.5 3.1E-11 6.6E-16 118.1 25.4 195 428-670 29-231 (235)
99 KOG2047 mRNA splicing factor [ 99.4 5E-09 1.1E-13 107.5 39.8 329 346-708 345-717 (835)
100 PLN02789 farnesyltranstransfer 99.4 2.3E-10 5.1E-15 114.6 27.7 209 401-655 46-268 (320)
101 KOG2300 Uncharacterized conser 99.4 1.9E-07 4E-12 93.1 46.0 464 220-717 6-517 (629)
102 PF14938 SNAP: Soluble NSF att 99.4 3.3E-11 7.2E-16 120.3 20.6 231 474-716 35-268 (282)
103 KOG4340 Uncharacterized conser 99.4 2.1E-09 4.5E-14 100.1 30.4 225 276-541 21-265 (459)
104 COG3071 HemY Uncharacterized e 99.4 1.9E-08 4.1E-13 98.2 36.0 303 352-714 86-390 (400)
105 KOG3617 WD40 and TPR repeat-co 99.3 1.2E-07 2.7E-12 99.8 42.2 423 270-717 831-1362(1416)
106 PRK14720 transcript cleavage f 99.3 1.8E-10 3.8E-15 127.3 22.2 285 344-717 25-309 (906)
107 COG3071 HemY Uncharacterized e 99.3 7E-09 1.5E-13 101.2 30.0 301 223-588 86-391 (400)
108 PF10345 Cohesin_load: Cohesin 99.3 3.5E-06 7.5E-11 93.9 55.2 476 219-712 57-604 (608)
109 KOG4340 Uncharacterized conser 99.3 6.7E-09 1.4E-13 96.8 25.8 393 199-673 22-445 (459)
110 PRK15359 type III secretion sy 99.3 1.1E-10 2.4E-15 103.3 13.8 127 537-697 13-139 (144)
111 PRK15359 type III secretion sy 99.2 1.1E-10 2.4E-15 103.2 12.8 112 578-717 13-124 (144)
112 KOG3617 WD40 and TPR repeat-co 99.2 1.6E-07 3.4E-12 99.0 36.6 341 222-629 758-1174(1416)
113 KOG3060 Uncharacterized conser 99.2 8.7E-09 1.9E-13 94.2 23.7 209 407-655 27-238 (289)
114 PRK15179 Vi polysaccharide bio 99.2 1.3E-09 2.9E-14 120.0 21.5 156 488-672 63-218 (694)
115 PRK10370 formate-dependent nit 99.2 1.4E-09 3.1E-14 101.7 18.7 122 571-717 52-176 (198)
116 KOG1128 Uncharacterized conser 99.2 5.1E-09 1.1E-13 109.4 24.1 253 236-551 359-621 (777)
117 PRK14720 transcript cleavage f 99.2 2.9E-09 6.3E-14 117.9 23.6 236 213-485 23-268 (906)
118 PRK15179 Vi polysaccharide bio 99.2 1.6E-09 3.5E-14 119.3 21.2 158 531-717 63-220 (694)
119 PF10345 Cohesin_load: Cohesin 99.2 2.1E-05 4.5E-10 87.8 52.7 423 281-715 37-524 (608)
120 KOG1128 Uncharacterized conser 99.1 1.2E-08 2.6E-13 106.6 21.4 224 308-592 398-621 (777)
121 KOG3060 Uncharacterized conser 99.1 3.3E-08 7.2E-13 90.5 21.5 195 488-717 26-223 (289)
122 PRK10370 formate-dependent nit 99.1 7.4E-09 1.6E-13 96.8 17.8 150 398-588 22-174 (198)
123 KOG0553 TPR repeat-containing 99.1 5.6E-10 1.2E-14 105.0 9.6 101 600-717 81-181 (304)
124 COG5010 TadD Flp pilus assembl 99.0 1.6E-08 3.4E-13 93.7 17.8 168 427-627 62-229 (257)
125 PRK15363 pathogenicity island 99.0 1.2E-08 2.7E-13 88.1 15.7 110 558-688 35-144 (157)
126 TIGR02552 LcrH_SycD type III s 99.0 3.5E-09 7.7E-14 93.4 12.8 102 599-717 16-117 (135)
127 PF13525 YfiO: Outer membrane 99.0 2.5E-07 5.4E-12 87.4 25.8 183 432-662 5-198 (203)
128 COG5010 TadD Flp pilus assembl 99.0 2.2E-08 4.7E-13 92.7 17.7 167 470-669 63-229 (257)
129 PF13424 TPR_12: Tetratricopep 99.0 2.3E-09 5E-14 84.0 9.6 76 597-673 2-77 (78)
130 KOG0553 TPR repeat-containing 99.0 4.9E-09 1.1E-13 98.8 13.1 120 558-701 81-200 (304)
131 COG2909 MalT ATP-dependent tra 99.0 7.7E-06 1.7E-10 88.4 38.4 341 217-584 343-685 (894)
132 PRK15363 pathogenicity island 99.0 7.4E-09 1.6E-13 89.5 12.7 100 599-715 34-133 (157)
133 PF13424 TPR_12: Tetratricopep 99.0 2.2E-09 4.7E-14 84.2 8.7 77 638-716 1-77 (78)
134 CHL00033 ycf3 photosystem I as 99.0 2.7E-08 5.9E-13 91.2 16.3 119 557-688 34-159 (168)
135 KOG1839 Uncharacterized protei 99.0 2.2E-07 4.9E-12 104.1 25.6 444 238-690 640-1147(1236)
136 TIGR02552 LcrH_SycD type III s 99.0 2E-08 4.2E-13 88.6 14.3 111 539-672 5-115 (135)
137 PRK10866 outer membrane biogen 98.9 3.6E-07 7.8E-12 88.3 24.0 188 432-667 32-237 (243)
138 KOG1585 Protein required for f 98.9 3.9E-06 8.4E-11 76.6 27.6 221 392-624 31-251 (308)
139 KOG3616 Selective LIM binding 98.9 1.4E-05 3.1E-10 83.6 35.0 224 434-711 663-908 (1636)
140 KOG3616 Selective LIM binding 98.9 1.6E-05 3.5E-10 83.2 34.6 227 267-545 663-910 (1636)
141 PF13525 YfiO: Outer membrane 98.9 5.2E-07 1.1E-11 85.2 22.4 183 265-494 5-198 (203)
142 PF04733 Coatomer_E: Coatomer 98.9 3E-08 6.6E-13 98.2 13.3 258 400-717 9-268 (290)
143 PRK10866 outer membrane biogen 98.9 1.9E-06 4.2E-11 83.3 25.2 190 473-711 31-238 (243)
144 TIGR02795 tol_pal_ybgF tol-pal 98.8 6E-08 1.3E-12 83.3 12.6 106 601-717 3-108 (119)
145 CHL00033 ycf3 photosystem I as 98.8 7.4E-08 1.6E-12 88.3 13.7 121 470-596 31-151 (168)
146 PRK02603 photosystem I assembl 98.8 4.6E-07 9.9E-12 83.4 18.7 111 556-679 33-150 (172)
147 PF04733 Coatomer_E: Coatomer 98.8 3E-08 6.4E-13 98.3 11.3 253 359-671 10-265 (290)
148 COG2909 MalT ATP-dependent tra 98.8 0.00022 4.7E-09 77.6 40.7 340 262-627 344-686 (894)
149 KOG2471 TPR repeat-containing 98.8 1E-05 2.2E-10 81.0 28.5 409 265-711 100-681 (696)
150 KOG1585 Protein required for f 98.8 7E-06 1.5E-10 74.9 24.7 222 431-666 30-251 (308)
151 PLN03088 SGT1, suppressor of 98.8 5.4E-08 1.2E-12 100.2 13.1 98 603-717 5-102 (356)
152 KOG1070 rRNA processing protei 98.8 1E-06 2.3E-11 98.4 23.4 219 208-461 1445-1663(1710)
153 PF09976 TPR_21: Tetratricopep 98.8 8.5E-07 1.8E-11 78.9 19.0 124 443-585 22-145 (145)
154 PLN03088 SGT1, suppressor of 98.8 1.1E-07 2.3E-12 98.1 14.9 113 561-697 5-117 (356)
155 PRK02603 photosystem I assembl 98.8 3.6E-07 7.8E-12 84.1 16.6 108 258-379 28-142 (172)
156 PF09976 TPR_21: Tetratricopep 98.8 5.5E-07 1.2E-11 80.1 17.1 135 221-377 11-145 (145)
157 KOG0543 FKBP-type peptidyl-pro 98.8 1.4E-07 3E-12 93.1 14.0 140 562-717 212-358 (397)
158 KOG1586 Protein required for f 98.8 1E-05 2.2E-10 73.5 24.2 197 363-587 27-224 (288)
159 KOG1839 Uncharacterized protei 98.8 1.6E-06 3.4E-11 97.5 23.5 400 313-717 670-1131(1236)
160 PF13414 TPR_11: TPR repeat; P 98.7 5.5E-08 1.2E-12 74.0 8.3 66 642-716 3-69 (69)
161 TIGR02795 tol_pal_ybgF tol-pal 98.7 3.1E-07 6.8E-12 78.8 13.8 104 559-672 3-106 (119)
162 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 3E-12 77.1 10.6 99 602-717 2-100 (100)
163 COG4783 Putative Zn-dependent 98.7 1.3E-06 2.8E-11 88.1 18.9 152 429-629 303-454 (484)
164 KOG0543 FKBP-type peptidyl-pro 98.7 3.9E-07 8.4E-12 90.0 14.5 146 219-382 206-358 (397)
165 KOG1070 rRNA processing protei 98.7 4.2E-06 9E-11 93.8 23.6 222 451-715 1443-1664(1710)
166 KOG1586 Protein required for f 98.7 7.5E-06 1.6E-10 74.2 20.8 196 487-717 27-227 (288)
167 PRK10803 tol-pal system protei 98.7 3.9E-07 8.4E-12 88.6 13.7 106 601-717 143-249 (263)
168 COG4783 Putative Zn-dependent 98.7 1.4E-06 3E-11 87.9 17.7 152 218-421 303-454 (484)
169 PF13414 TPR_11: TPR repeat; P 98.6 1.9E-07 4.2E-12 71.0 8.8 64 600-671 3-67 (69)
170 COG3898 Uncharacterized membra 98.6 0.00024 5.2E-09 69.6 31.2 302 227-587 90-392 (531)
171 KOG3081 Vesicle coat complex C 98.6 1.7E-05 3.7E-10 73.7 22.3 158 522-717 113-274 (299)
172 PF12895 Apc3: Anaphase-promot 98.6 2.6E-07 5.6E-12 73.4 8.7 81 613-711 2-84 (84)
173 PF12895 Apc3: Anaphase-promot 98.6 3E-07 6.6E-12 73.0 9.1 84 570-668 1-84 (84)
174 COG3898 Uncharacterized membra 98.6 0.00052 1.1E-08 67.4 31.8 299 357-714 91-392 (531)
175 KOG2471 TPR repeat-containing 98.6 1.2E-05 2.5E-10 80.7 21.2 338 265-627 240-682 (696)
176 PF12688 TPR_5: Tetratrico pep 98.6 1.5E-06 3.4E-11 72.8 12.7 102 601-713 2-103 (120)
177 PF12688 TPR_5: Tetratrico pep 98.5 4.1E-06 8.9E-11 70.3 14.3 99 559-670 2-103 (120)
178 KOG3081 Vesicle coat complex C 98.5 6.4E-05 1.4E-09 70.0 22.9 249 359-670 17-269 (299)
179 COG1729 Uncharacterized protei 98.5 1.3E-06 2.9E-11 82.3 12.2 104 603-717 144-247 (262)
180 KOG2053 Mitochondrial inherita 98.5 0.0028 6E-08 69.1 38.2 230 232-503 20-255 (932)
181 cd00189 TPR Tetratricopeptide 98.5 7.4E-07 1.6E-11 72.7 9.4 97 434-547 2-98 (100)
182 PRK10803 tol-pal system protei 98.5 4.7E-06 1E-10 81.1 15.7 104 559-672 143-247 (263)
183 PF13432 TPR_16: Tetratricopep 98.5 5.3E-07 1.2E-11 67.5 6.7 59 605-671 2-60 (65)
184 PF13432 TPR_16: Tetratricopep 98.4 1.2E-06 2.5E-11 65.7 8.4 63 646-717 1-63 (65)
185 COG4785 NlpI Lipoprotein NlpI, 98.4 5.3E-05 1.1E-09 68.1 19.7 232 428-702 61-293 (297)
186 COG5159 RPN6 26S proteasome re 98.4 0.00025 5.4E-09 66.5 24.2 301 354-669 7-312 (421)
187 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00025 5.5E-09 69.0 26.2 207 474-716 59-267 (291)
188 KOG4234 TPR repeat-containing 98.4 7.2E-06 1.6E-10 72.5 12.6 119 219-359 93-211 (271)
189 COG4785 NlpI Lipoprotein NlpI, 98.4 3.9E-05 8.5E-10 68.9 17.2 203 390-629 63-266 (297)
190 KOG1463 26S proteasome regulat 98.4 0.00036 7.8E-09 67.2 24.5 300 354-669 8-314 (411)
191 COG0457 NrfG FOG: TPR repeat [ 98.4 0.0011 2.4E-08 64.4 30.1 229 363-629 36-265 (291)
192 PF10300 DUF3808: Protein of u 98.4 0.0018 3.9E-08 69.4 33.0 190 481-693 195-398 (468)
193 KOG4555 TPR repeat-containing 98.4 2.2E-05 4.8E-10 64.2 13.9 102 221-337 43-144 (175)
194 KOG4555 TPR repeat-containing 98.3 1.6E-05 3.5E-10 65.1 12.8 101 434-547 45-145 (175)
195 COG4105 ComL DNA uptake lipopr 98.3 0.0002 4.4E-09 67.2 21.6 186 431-664 33-226 (254)
196 KOG4234 TPR repeat-containing 98.3 6.6E-06 1.4E-10 72.7 10.9 123 562-703 99-221 (271)
197 PRK11906 transcriptional regul 98.3 4.3E-05 9.4E-10 77.9 17.8 160 311-500 258-433 (458)
198 COG4235 Cytochrome c biogenesi 98.3 1.5E-05 3.3E-10 76.2 13.8 102 599-717 155-259 (287)
199 PRK10153 DNA-binding transcrip 98.3 1.7E-05 3.7E-10 85.3 15.8 121 573-717 357-485 (517)
200 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.8E-10 81.2 15.1 120 563-710 174-293 (395)
201 PF13512 TPR_18: Tetratricopep 98.3 2.3E-05 5E-10 66.8 12.9 107 600-717 10-131 (142)
202 PRK11906 transcriptional regul 98.3 1.7E-05 3.7E-10 80.8 14.0 135 561-717 258-404 (458)
203 PRK15331 chaperone protein Sic 98.3 1.8E-05 3.9E-10 69.0 12.1 99 306-420 35-133 (165)
204 KOG4648 Uncharacterized conser 98.2 3.1E-07 6.8E-12 87.5 1.4 230 435-717 100-333 (536)
205 PRK10153 DNA-binding transcrip 98.2 3.2E-05 6.9E-10 83.2 16.4 131 310-461 341-482 (517)
206 PRK15331 chaperone protein Sic 98.2 1.2E-05 2.6E-10 70.1 10.6 99 599-714 36-134 (165)
207 KOG0985 Vesicle coat protein c 98.2 0.017 3.7E-07 63.8 36.9 149 397-577 1199-1373(1666)
208 COG4700 Uncharacterized protei 98.2 0.00028 6E-09 62.0 18.4 162 359-550 65-226 (251)
209 COG4105 ComL DNA uptake lipopr 98.2 0.00091 2E-08 62.9 22.4 196 474-716 34-234 (254)
210 PF14559 TPR_19: Tetratricopep 98.2 5.8E-06 1.3E-10 62.5 6.6 66 611-692 2-67 (68)
211 KOG1464 COP9 signalosome, subu 98.2 0.00047 1E-08 64.2 19.6 242 321-572 40-286 (440)
212 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.4E-05 9.5E-10 78.4 14.5 120 356-500 175-294 (395)
213 COG1729 Uncharacterized protei 98.1 2.9E-05 6.3E-10 73.4 12.1 102 561-672 144-245 (262)
214 KOG1463 26S proteasome regulat 98.1 0.0058 1.3E-07 59.1 26.8 302 398-716 10-318 (411)
215 COG4700 Uncharacterized protei 98.1 0.00021 4.6E-09 62.7 15.7 150 531-711 70-219 (251)
216 PF08631 SPO22: Meiosis protei 98.1 0.0041 9E-08 61.9 27.2 256 318-586 3-274 (278)
217 PF13512 TPR_18: Tetratricopep 98.1 0.00011 2.4E-09 62.8 13.4 114 558-686 10-138 (142)
218 KOG2796 Uncharacterized conser 98.1 0.0052 1.1E-07 57.3 24.9 241 265-550 69-319 (366)
219 COG4235 Cytochrome c biogenesi 98.1 0.00014 3E-09 69.8 15.5 116 558-693 156-274 (287)
220 PF08631 SPO22: Meiosis protei 98.1 0.006 1.3E-07 60.8 27.8 257 231-502 3-274 (278)
221 KOG1914 mRNA cleavage and poly 98.1 0.021 4.6E-07 59.0 41.9 441 211-716 10-503 (656)
222 KOG2796 Uncharacterized conser 98.1 0.0009 1.9E-08 62.2 19.4 141 350-505 177-317 (366)
223 PF13371 TPR_9: Tetratricopept 98.1 2.3E-05 5E-10 60.2 8.1 58 606-671 1-58 (73)
224 KOG1464 COP9 signalosome, subu 98.0 0.00055 1.2E-08 63.7 17.6 240 238-488 43-286 (440)
225 KOG0985 Vesicle coat protein c 98.0 0.033 7.1E-07 61.7 33.1 148 477-662 1223-1374(1666)
226 KOG4648 Uncharacterized conser 98.0 1.8E-05 3.9E-10 75.8 7.9 97 604-717 101-197 (536)
227 COG5159 RPN6 26S proteasome re 97.9 0.013 2.8E-07 55.3 25.0 232 312-550 7-239 (421)
228 KOG0890 Protein kinase of the 97.9 0.025 5.3E-07 68.6 33.3 411 226-694 1388-1856(2382)
229 PF13371 TPR_9: Tetratricopept 97.9 3.7E-05 8E-10 59.1 6.8 61 648-717 1-61 (73)
230 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.1E-05 8.8E-10 77.9 8.7 69 637-714 70-141 (453)
231 PF02259 FAT: FAT domain; Int 97.9 0.022 4.8E-07 59.4 29.9 151 554-717 142-341 (352)
232 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.4E-05 9.5E-10 77.7 8.8 67 597-671 72-141 (453)
233 KOG1914 mRNA cleavage and poly 97.9 0.051 1.1E-06 56.3 37.1 396 262-714 17-464 (656)
234 KOG2053 Mitochondrial inherita 97.8 0.043 9.4E-07 60.3 30.5 230 362-629 21-255 (932)
235 PF13374 TPR_10: Tetratricopep 97.8 3.4E-05 7.3E-10 51.7 4.9 41 642-682 2-42 (42)
236 KOG2610 Uncharacterized conser 97.8 0.035 7.6E-07 53.8 29.0 165 357-544 110-274 (491)
237 PF14559 TPR_19: Tetratricopep 97.8 5.6E-05 1.2E-09 57.1 6.5 53 443-503 2-54 (68)
238 PF02259 FAT: FAT domain; Int 97.8 0.06 1.3E-06 56.1 31.3 50 598-655 250-305 (352)
239 PF04184 ST7: ST7 protein; In 97.7 0.0014 3E-08 67.1 16.5 133 226-376 173-321 (539)
240 PF04184 ST7: ST7 protein; In 97.7 0.0027 5.8E-08 65.0 17.9 184 483-717 177-378 (539)
241 PF10300 DUF3808: Protein of u 97.7 0.12 2.6E-06 55.5 34.4 172 404-597 200-386 (468)
242 KOG2041 WD40 repeat protein [G 97.7 0.13 2.7E-06 55.0 30.7 164 310-498 694-876 (1189)
243 PF07079 DUF1347: Protein of u 97.7 0.091 2E-06 53.4 41.1 144 268-424 9-160 (549)
244 KOG0545 Aryl-hydrocarbon recep 97.6 0.00064 1.4E-08 62.5 11.2 108 601-717 179-296 (329)
245 PF03704 BTAD: Bacterial trans 97.6 0.0074 1.6E-07 53.6 17.9 125 519-679 8-133 (146)
246 KOG1550 Extracellular protein 97.6 0.054 1.2E-06 59.7 27.6 279 324-671 228-538 (552)
247 KOG0890 Protein kinase of the 97.6 0.14 3.1E-06 62.4 32.1 356 270-671 1388-1784(2382)
248 KOG4507 Uncharacterized conser 97.5 0.0064 1.4E-07 63.0 17.8 110 211-337 203-312 (886)
249 PF13281 DUF4071: Domain of un 97.5 0.013 2.9E-07 59.3 19.8 181 517-717 141-337 (374)
250 KOG2610 Uncharacterized conser 97.5 0.0078 1.7E-07 58.2 17.0 140 428-583 133-272 (491)
251 PF13281 DUF4071: Domain of un 97.5 0.053 1.2E-06 55.1 23.9 206 446-671 113-334 (374)
252 KOG0545 Aryl-hydrocarbon recep 97.5 0.0035 7.5E-08 57.8 13.8 105 559-671 179-293 (329)
253 PF13374 TPR_10: Tetratricopep 97.5 0.00024 5.2E-09 47.4 4.9 41 600-640 2-42 (42)
254 PF12968 DUF3856: Domain of Un 97.5 0.018 3.8E-07 46.8 15.6 120 349-468 6-136 (144)
255 KOG4642 Chaperone-dependent E3 97.4 0.0013 2.9E-08 60.3 10.5 98 436-550 14-111 (284)
256 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0014 3E-08 63.2 11.2 106 264-382 80-185 (390)
257 COG2976 Uncharacterized protei 97.4 0.028 6.1E-07 50.5 18.3 139 564-717 37-191 (207)
258 KOG4642 Chaperone-dependent E3 97.4 0.0012 2.6E-08 60.6 9.8 98 562-675 14-111 (284)
259 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0046 9.9E-08 59.8 14.1 109 552-672 75-183 (390)
260 KOG2041 WD40 repeat protein [G 97.4 0.26 5.7E-06 52.7 34.2 69 258-334 688-760 (1189)
261 COG2976 Uncharacterized protei 97.4 0.04 8.7E-07 49.5 18.8 97 561-671 92-188 (207)
262 PF12968 DUF3856: Domain of Un 97.4 0.043 9.3E-07 44.6 16.9 120 516-635 6-135 (144)
263 PF10602 RPN7: 26S proteasome 97.4 0.0077 1.7E-07 55.0 14.9 126 453-587 17-142 (177)
264 KOG1550 Extracellular protein 97.4 0.033 7.2E-07 61.3 22.5 269 220-547 243-539 (552)
265 PF06552 TOM20_plant: Plant sp 97.4 0.0013 2.8E-08 58.1 9.1 92 616-717 7-112 (186)
266 PF09986 DUF2225: Uncharacteri 97.3 0.0048 1E-07 58.1 13.4 100 571-671 90-194 (214)
267 PF09986 DUF2225: Uncharacteri 97.3 0.0047 1E-07 58.2 12.7 101 612-714 89-194 (214)
268 PF13428 TPR_14: Tetratricopep 97.3 0.00068 1.5E-08 45.7 5.1 42 643-692 2-43 (44)
269 PF13428 TPR_14: Tetratricopep 97.2 0.00067 1.4E-08 45.7 4.8 42 601-650 2-43 (44)
270 PF10602 RPN7: 26S proteasome 97.2 0.02 4.3E-07 52.4 16.0 125 415-547 19-143 (177)
271 KOG1258 mRNA processing protei 97.2 0.4 8.7E-06 50.9 38.2 393 208-656 66-489 (577)
272 KOG1258 mRNA processing protei 97.1 0.48 1E-05 50.3 39.0 388 262-717 76-473 (577)
273 PF13431 TPR_17: Tetratricopep 97.1 0.00047 1E-08 43.2 2.8 34 622-663 1-34 (34)
274 PF03704 BTAD: Bacterial trans 97.1 0.034 7.3E-07 49.4 15.8 108 268-383 9-129 (146)
275 KOG3783 Uncharacterized conser 97.1 0.52 1.1E-05 49.4 27.4 221 311-549 270-523 (546)
276 PF06552 TOM20_plant: Plant sp 97.0 0.0082 1.8E-07 53.2 10.8 69 599-675 24-106 (186)
277 PF00515 TPR_1: Tetratricopept 97.0 0.0015 3.3E-08 41.1 4.6 33 684-717 1-33 (34)
278 PF05843 Suf: Suppressor of fo 97.0 0.0093 2E-07 59.4 12.1 136 560-717 3-139 (280)
279 COG3118 Thioredoxin domain-con 97.0 0.096 2.1E-06 50.5 17.9 138 220-384 133-270 (304)
280 PF00515 TPR_1: Tetratricopept 96.9 0.0028 6E-08 39.8 5.1 30 600-629 1-30 (34)
281 PF05843 Suf: Suppressor of fo 96.9 0.015 3.1E-07 58.0 12.7 136 394-549 3-139 (280)
282 KOG1538 Uncharacterized conser 96.9 0.37 7.9E-06 51.2 22.4 52 565-627 780-831 (1081)
283 PF07719 TPR_2: Tetratricopept 96.9 0.0025 5.4E-08 40.0 4.6 33 684-717 1-33 (34)
284 PF12862 Apc5: Anaphase-promot 96.7 0.034 7.3E-07 44.8 11.6 81 401-483 7-90 (94)
285 PF13431 TPR_17: Tetratricopep 96.7 0.0015 3.4E-08 40.9 2.8 34 330-371 1-34 (34)
286 PF12862 Apc5: Anaphase-promot 96.7 0.037 8.1E-07 44.6 11.3 83 360-442 8-91 (94)
287 PF13176 TPR_7: Tetratricopept 96.7 0.0049 1.1E-07 39.3 4.9 30 644-673 1-30 (36)
288 KOG4814 Uncharacterized conser 96.7 1.2 2.6E-05 47.5 37.0 105 222-339 355-459 (872)
289 PF07719 TPR_2: Tetratricopept 96.6 0.0036 7.9E-08 39.3 4.2 33 350-382 1-33 (34)
290 KOG4814 Uncharacterized conser 96.5 1.5 3.2E-05 46.9 36.2 106 266-382 355-460 (872)
291 PF13176 TPR_7: Tetratricopept 96.5 0.0074 1.6E-07 38.4 4.9 33 352-384 1-33 (36)
292 PRK13184 pknD serine/threonine 96.5 2.6 5.6E-05 48.9 31.7 102 229-352 483-591 (932)
293 PF13181 TPR_8: Tetratricopept 96.3 0.0096 2.1E-07 37.3 4.5 32 685-717 2-33 (34)
294 COG3118 Thioredoxin domain-con 96.2 0.35 7.6E-06 46.8 16.4 156 520-704 137-292 (304)
295 PF13181 TPR_8: Tetratricopept 96.1 0.016 3.4E-07 36.3 4.8 31 351-381 2-32 (34)
296 COG0790 FOG: TPR repeat, SEL1 96.1 0.86 1.9E-05 45.9 19.9 170 272-488 48-236 (292)
297 PF07079 DUF1347: Protein of u 96.0 2.2 4.8E-05 43.9 41.3 140 511-668 373-521 (549)
298 COG0790 FOG: TPR repeat, SEL1 95.9 1.4 3E-05 44.4 20.8 166 443-656 52-236 (292)
299 PF04910 Tcf25: Transcriptiona 95.8 0.59 1.3E-05 48.2 17.5 171 427-629 35-222 (360)
300 KOG0376 Serine-threonine phosp 95.8 0.0091 2E-07 61.1 4.1 96 605-717 9-104 (476)
301 KOG0128 RNA-binding protein SA 95.8 4.2 9.1E-05 45.1 33.1 435 211-704 103-554 (881)
302 PF13174 TPR_6: Tetratricopept 95.7 0.018 4E-07 35.6 3.9 32 685-717 1-32 (33)
303 KOG4322 Anaphase-promoting com 95.6 3.1 6.7E-05 42.5 27.2 194 470-670 269-470 (482)
304 KOG0376 Serine-threonine phosp 95.6 0.017 3.7E-07 59.2 5.0 109 562-694 8-116 (476)
305 PF00244 14-3-3: 14-3-3 protei 95.5 2.4 5.3E-05 40.8 22.1 185 477-676 4-203 (236)
306 KOG3783 Uncharacterized conser 95.5 4 8.6E-05 43.1 35.5 248 429-717 264-523 (546)
307 COG5107 RNA14 Pre-mRNA 3'-end 95.3 4 8.6E-05 41.9 30.6 437 210-717 31-534 (660)
308 PF04910 Tcf25: Transcriptiona 95.3 0.85 1.8E-05 47.1 16.5 162 210-383 29-226 (360)
309 KOG1308 Hsp70-interacting prot 95.3 0.0061 1.3E-07 59.3 0.9 92 609-717 123-214 (377)
310 PF11817 Foie-gras_1: Foie gra 95.1 3.5 7.6E-05 40.2 21.9 93 364-458 152-244 (247)
311 PF08424 NRDE-2: NRDE-2, neces 95.1 2.8 6.1E-05 42.7 19.4 148 426-587 13-183 (321)
312 PF13174 TPR_6: Tetratricopept 95.0 0.034 7.3E-07 34.4 3.4 32 351-382 1-32 (33)
313 KOG1308 Hsp70-interacting prot 95.0 0.013 2.8E-07 57.2 1.9 92 439-547 121-212 (377)
314 PRK14707 hypothetical protein; 94.9 6.9 0.00015 48.2 23.6 367 311-684 834-1209(2710)
315 KOG4322 Anaphase-promoting com 94.9 5.1 0.00011 41.0 29.8 199 512-717 268-474 (482)
316 PF04190 DUF410: Protein of un 94.9 4.1 8.9E-05 40.0 19.1 205 481-699 17-243 (260)
317 PF11817 Foie-gras_1: Foie gra 94.8 4.4 9.6E-05 39.5 23.0 187 352-543 12-244 (247)
318 KOG2581 26S proteasome regulat 94.8 5.4 0.00012 40.5 21.9 141 403-550 137-280 (493)
319 COG5187 RPN7 26S proteasome re 94.8 2 4.2E-05 41.3 15.4 136 407-550 90-225 (412)
320 KOG1538 Uncharacterized conser 94.7 7.5 0.00016 41.9 24.5 182 356-585 638-831 (1081)
321 KOG2581 26S proteasome regulat 94.7 5.7 0.00012 40.3 21.6 141 276-422 137-277 (493)
322 PF12739 TRAPPC-Trs85: ER-Golg 94.7 3.8 8.2E-05 43.5 19.7 178 475-673 209-401 (414)
323 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.2 4.2E-06 37.8 6.8 68 221-295 6-73 (80)
324 PF12739 TRAPPC-Trs85: ER-Golg 94.5 6.2 0.00013 41.9 20.8 178 351-550 209-403 (414)
325 PRK14707 hypothetical protein; 94.5 11 0.00024 46.6 23.8 384 313-701 752-1142(2710)
326 PF14561 TPR_20: Tetratricopep 94.5 0.2 4.4E-06 39.7 7.3 71 620-704 8-78 (90)
327 PF08424 NRDE-2: NRDE-2, neces 94.4 3.6 7.8E-05 41.9 18.2 147 470-629 15-183 (321)
328 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.11 2.5E-06 33.2 4.6 36 643-678 2-37 (38)
329 KOG0687 26S proteasome regulat 94.4 5.7 0.00012 39.1 19.1 132 325-463 81-212 (393)
330 PF04190 DUF410: Protein of un 94.3 5.9 0.00013 38.9 25.7 220 404-657 2-243 (260)
331 KOG4507 Uncharacterized conser 94.2 0.12 2.5E-06 54.1 6.7 93 564-671 613-705 (886)
332 COG4649 Uncharacterized protei 93.9 4.4 9.5E-05 36.0 16.0 149 481-670 46-195 (221)
333 PF10579 Rapsyn_N: Rapsyn N-te 93.8 0.7 1.5E-05 34.9 8.3 70 311-385 9-78 (80)
334 PRK10941 hypothetical protein; 93.8 0.75 1.6E-05 45.0 11.2 81 599-692 180-260 (269)
335 PF04781 DUF627: Protein of un 93.7 0.57 1.2E-05 38.2 8.4 95 271-379 2-107 (111)
336 KOG0687 26S proteasome regulat 93.7 4.2 9.1E-05 40.0 15.4 128 415-550 87-214 (393)
337 PF09613 HrpB1_HrpK: Bacterial 93.6 1.4 3E-05 38.9 11.3 86 600-701 10-95 (160)
338 COG5187 RPN7 26S proteasome re 93.4 7.8 0.00017 37.4 19.7 135 365-506 90-224 (412)
339 PF00244 14-3-3: 14-3-3 protei 93.4 8 0.00017 37.3 20.3 182 435-632 4-201 (236)
340 COG5107 RNA14 Pre-mRNA 3'-end 93.2 12 0.00026 38.7 21.8 233 265-549 302-534 (660)
341 PF04781 DUF627: Protein of un 93.1 1.2 2.7E-05 36.3 9.5 95 398-503 2-107 (111)
342 COG3947 Response regulator con 93.0 3.1 6.7E-05 40.2 13.3 79 601-687 280-358 (361)
343 smart00028 TPR Tetratricopepti 92.8 0.16 3.4E-06 30.6 3.4 32 685-717 2-33 (34)
344 COG3629 DnrI DNA-binding trans 92.7 2.6 5.7E-05 41.2 13.0 78 599-684 152-229 (280)
345 PF10516 SHNi-TPR: SHNi-TPR; 92.5 0.39 8.3E-06 30.8 4.7 35 601-635 2-36 (38)
346 PF09613 HrpB1_HrpK: Bacterial 92.5 1.6 3.6E-05 38.4 10.2 89 428-533 6-94 (160)
347 PF11207 DUF2989: Protein of u 92.4 4.8 0.0001 37.0 13.4 84 401-494 115-198 (203)
348 smart00101 14_3_3 14-3-3 homol 92.3 11 0.00024 36.3 24.3 183 477-673 4-202 (244)
349 PF14853 Fis1_TPR_C: Fis1 C-te 92.3 0.95 2.1E-05 31.6 6.8 40 601-648 2-41 (53)
350 KOG0686 COP9 signalosome, subu 92.0 3.5 7.5E-05 41.8 12.8 105 309-418 151-255 (466)
351 COG4976 Predicted methyltransf 91.9 0.24 5.3E-06 45.7 4.5 59 650-717 3-61 (287)
352 PF14853 Fis1_TPR_C: Fis1 C-te 91.9 1.2 2.6E-05 31.1 7.0 39 643-689 2-40 (53)
353 PF10255 Paf67: RNA polymerase 91.3 2.2 4.7E-05 44.2 11.1 73 267-340 124-196 (404)
354 PF15015 NYD-SP12_N: Spermatog 91.3 4.5 9.8E-05 41.1 12.8 106 313-426 181-296 (569)
355 PF15015 NYD-SP12_N: Spermatog 91.2 3.2 7E-05 42.2 11.7 101 564-672 182-292 (569)
356 PF11207 DUF2989: Protein of u 91.1 6.4 0.00014 36.3 12.6 77 616-704 122-198 (203)
357 PF14561 TPR_20: Tetratricopep 91.0 4.1 8.9E-05 32.3 10.2 50 328-385 8-57 (90)
358 KOG2422 Uncharacterized conser 90.9 23 0.0005 38.0 17.8 175 278-461 251-448 (665)
359 PF04097 Nic96: Nup93/Nic96; 90.8 32 0.0007 38.6 25.7 31 513-543 410-440 (613)
360 smart00101 14_3_3 14-3-3 homol 90.8 16 0.00035 35.2 22.0 182 353-547 4-201 (244)
361 smart00028 TPR Tetratricopepti 90.7 0.34 7.3E-06 29.0 3.2 31 351-381 2-32 (34)
362 COG4649 Uncharacterized protei 90.4 13 0.00027 33.3 14.7 123 571-713 71-195 (221)
363 KOG2561 Adaptor protein NUB1, 90.4 8.8 0.00019 39.3 13.9 116 222-340 164-299 (568)
364 PF04053 Coatomer_WDAD: Coatom 90.2 9.2 0.0002 40.7 15.0 127 317-498 270-397 (443)
365 KOG1497 COP9 signalosome, subu 90.2 20 0.00044 35.3 18.7 111 348-459 101-211 (399)
366 PF04053 Coatomer_WDAD: Coatom 89.9 5.4 0.00012 42.5 13.0 157 361-584 272-428 (443)
367 PRK10941 hypothetical protein; 89.6 2 4.2E-05 42.2 8.8 66 643-717 182-247 (269)
368 KOG4014 Uncharacterized conser 89.5 13 0.00028 33.4 12.7 164 349-550 33-237 (248)
369 KOG3824 Huntingtin interacting 89.5 0.91 2E-05 43.9 6.1 70 606-691 122-191 (472)
370 TIGR02561 HrpB1_HrpK type III 89.4 5.5 0.00012 34.6 10.1 83 603-701 13-95 (153)
371 KOG0128 RNA-binding protein SA 89.3 42 0.00091 37.8 31.0 149 346-503 109-260 (881)
372 cd02682 MIT_AAA_Arch MIT: doma 89.3 3 6.6E-05 31.5 7.6 50 220-270 5-54 (75)
373 KOG0686 COP9 signalosome, subu 89.3 28 0.00061 35.7 18.3 116 423-544 141-256 (466)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 88.9 8.4 0.00018 32.9 11.2 87 488-585 40-126 (126)
375 PF07721 TPR_4: Tetratricopept 88.5 0.66 1.4E-05 26.8 2.9 24 267-290 3-26 (26)
376 KOG1310 WD40 repeat protein [G 88.4 2.9 6.2E-05 43.8 9.1 103 216-337 369-474 (758)
377 PF07721 TPR_4: Tetratricopept 88.2 0.63 1.4E-05 26.9 2.7 24 643-666 2-25 (26)
378 KOG1497 COP9 signalosome, subu 88.1 29 0.00062 34.3 19.9 109 513-627 99-211 (399)
379 KOG3364 Membrane protein invol 87.7 7.7 0.00017 33.0 9.6 69 641-717 31-103 (149)
380 COG3629 DnrI DNA-binding trans 87.5 8.2 0.00018 37.9 11.4 71 307-385 152-222 (280)
381 PF08626 TRAPPC9-Trs120: Trans 87.5 81 0.0018 38.8 24.9 155 392-549 242-477 (1185)
382 KOG2908 26S proteasome regulat 87.1 34 0.00075 34.1 18.5 96 400-496 83-179 (380)
383 COG1747 Uncharacterized N-term 87.1 45 0.00097 35.4 21.7 200 435-671 69-288 (711)
384 TIGR02561 HrpB1_HrpK type III 87.0 6.4 0.00014 34.2 9.1 86 431-533 9-94 (153)
385 PF08626 TRAPPC9-Trs120: Trans 86.9 87 0.0019 38.6 24.2 153 473-631 241-476 (1185)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 86.7 7.9 0.00017 33.1 9.7 87 279-377 40-126 (126)
387 PF09670 Cas_Cas02710: CRISPR- 86.5 44 0.00096 34.9 17.1 141 518-675 132-274 (379)
388 PRK13184 pknD serine/threonine 86.5 75 0.0016 37.4 32.3 108 271-386 481-588 (932)
389 KOG2908 26S proteasome regulat 86.3 38 0.00083 33.8 17.9 95 526-622 84-179 (380)
390 PF09670 Cas_Cas02710: CRISPR- 85.8 49 0.0011 34.6 17.0 65 268-337 134-198 (379)
391 KOG3824 Huntingtin interacting 85.5 2.3 4.9E-05 41.3 6.2 62 647-717 121-182 (472)
392 PF05053 Menin: Menin; InterP 85.4 22 0.00047 38.1 13.7 77 429-508 274-352 (618)
393 KOG3807 Predicted membrane pro 84.9 43 0.00093 33.2 18.3 53 485-548 195-247 (556)
394 KOG1310 WD40 repeat protein [G 84.9 5.7 0.00012 41.7 9.2 86 615-717 389-477 (758)
395 KOG2422 Uncharacterized conser 84.8 62 0.0013 34.9 17.8 172 407-588 253-449 (665)
396 cd02683 MIT_1 MIT: domain cont 84.8 7.1 0.00015 29.8 7.6 50 220-270 5-54 (77)
397 TIGR03504 FimV_Cterm FimV C-te 84.7 2.5 5.4E-05 28.2 4.4 26 645-670 2-27 (44)
398 PF10952 DUF2753: Protein of u 84.3 23 0.0005 29.5 10.9 74 603-676 4-84 (140)
399 PF10952 DUF2753: Protein of u 84.2 23 0.0005 29.5 10.9 74 436-509 5-85 (140)
400 KOG4014 Uncharacterized conser 83.5 34 0.00074 30.9 12.9 193 217-466 30-238 (248)
401 COG4976 Predicted methyltransf 82.7 1.9 4.1E-05 40.1 4.3 55 609-671 4-58 (287)
402 PF04212 MIT: MIT (microtubule 82.5 8.4 0.00018 28.7 7.2 48 221-269 5-52 (69)
403 KOG2561 Adaptor protein NUB1, 82.3 20 0.00042 37.0 11.4 148 476-625 165-340 (568)
404 cd02678 MIT_VPS4 MIT: domain c 81.7 11 0.00024 28.7 7.6 50 220-270 5-54 (75)
405 PRK09169 hypothetical protein; 80.8 1.8E+02 0.0039 37.4 21.9 472 243-717 263-743 (2316)
406 KOG0276 Vesicle coat complex C 80.2 29 0.00063 37.4 12.2 51 273-337 645-695 (794)
407 PF10255 Paf67: RNA polymerase 80.0 7.8 0.00017 40.3 8.2 72 310-381 124-195 (404)
408 smart00745 MIT Microtubule Int 80.0 16 0.00035 27.9 8.2 48 220-268 7-54 (77)
409 KOG4563 Cell cycle-regulated h 80.0 6.5 0.00014 39.3 7.2 67 307-373 40-106 (400)
410 PF04097 Nic96: Nup93/Nic96; 80.0 1.1E+02 0.0024 34.5 19.8 19 272-290 265-283 (613)
411 KOG4521 Nuclear pore complex, 79.7 1.4E+02 0.003 35.4 21.8 201 473-717 919-1135(1480)
412 KOG0889 Histone acetyltransfer 79.7 2.4E+02 0.0051 38.1 35.5 140 473-629 2735-2883(3550)
413 KOG0276 Vesicle coat complex C 78.9 16 0.00034 39.3 9.9 50 318-380 647-696 (794)
414 KOG4563 Cell cycle-regulated h 78.8 5.4 0.00012 39.9 6.3 62 643-704 42-103 (400)
415 KOG3364 Membrane protein invol 78.8 28 0.00061 29.7 9.5 65 393-461 33-100 (149)
416 COG3014 Uncharacterized protei 78.8 75 0.0016 31.8 14.6 48 329-381 42-89 (449)
417 cd02656 MIT MIT: domain contai 78.3 18 0.00039 27.4 7.9 54 221-275 6-59 (75)
418 cd02684 MIT_2 MIT: domain cont 78.3 19 0.0004 27.4 7.8 51 220-271 5-55 (75)
419 COG2912 Uncharacterized conser 78.1 15 0.00032 35.7 8.8 82 599-693 180-261 (269)
420 COG3914 Spy Predicted O-linked 77.7 39 0.00084 36.5 12.4 95 606-717 73-174 (620)
421 KOG0508 Ankyrin repeat protein 77.6 1.5 3.3E-05 44.9 2.2 72 624-695 319-390 (615)
422 KOG3807 Predicted membrane pro 77.4 80 0.0017 31.4 17.5 111 441-586 193-303 (556)
423 TIGR03504 FimV_Cterm FimV C-te 76.9 11 0.00023 25.2 5.3 25 478-502 3-27 (44)
424 COG3947 Response regulator con 76.6 29 0.00062 33.9 10.1 75 560-642 281-355 (361)
425 KOG2114 Vacuolar assembly/sort 76.2 1.5E+02 0.0032 33.8 29.8 49 245-295 350-398 (933)
426 PF12854 PPR_1: PPR repeat 75.4 6 0.00013 24.5 3.7 26 642-667 7-32 (34)
427 KOG1920 IkappaB kinase complex 75.2 1.9E+02 0.004 34.5 23.3 130 401-544 889-1026(1265)
428 PF05053 Menin: Menin; InterP 75.1 84 0.0018 33.9 13.8 56 574-632 295-350 (618)
429 PRK15180 Vi polysaccharide bio 74.8 13 0.00028 38.7 7.8 123 570-717 301-423 (831)
430 cd02677 MIT_SNX15 MIT: domain 73.9 37 0.0008 25.8 8.7 49 220-269 5-53 (75)
431 PF12854 PPR_1: PPR repeat 73.7 7.2 0.00016 24.2 3.8 27 265-291 7-33 (34)
432 cd02681 MIT_calpain7_1 MIT: do 72.9 39 0.00085 25.7 8.2 32 644-675 8-39 (76)
433 PF04212 MIT: MIT (microtubule 72.8 31 0.00068 25.6 7.8 42 646-687 9-51 (69)
434 COG3014 Uncharacterized protei 72.5 1.1E+02 0.0024 30.7 16.9 29 520-548 61-89 (449)
435 COG3914 Spy Predicted O-linked 72.3 1.4E+02 0.0029 32.6 14.7 129 510-656 61-190 (620)
436 cd02682 MIT_AAA_Arch MIT: doma 71.7 22 0.00047 27.0 6.5 35 474-508 6-40 (75)
437 PHA02537 M terminase endonucle 71.0 33 0.00071 32.7 9.1 102 526-629 92-207 (230)
438 KOG2063 Vacuolar assembly/sort 70.6 70 0.0015 37.0 13.1 182 476-670 506-712 (877)
439 cd02681 MIT_calpain7_1 MIT: do 69.1 49 0.0011 25.2 8.0 32 601-632 7-38 (76)
440 KOG0889 Histone acetyltransfer 68.6 4.3E+02 0.0093 35.9 31.8 104 557-673 2735-2843(3550)
441 KOG2114 Vacuolar assembly/sort 68.4 2.2E+02 0.0048 32.5 30.6 55 197-252 344-398 (933)
442 PF07720 TPR_3: Tetratricopept 67.9 18 0.00039 22.8 4.6 31 685-716 2-34 (36)
443 PF07720 TPR_3: Tetratricopept 67.8 16 0.00034 23.1 4.3 29 351-379 2-32 (36)
444 PF10373 EST1_DNA_bind: Est1 D 67.2 12 0.00025 37.3 5.9 62 619-696 1-62 (278)
445 PHA02537 M terminase endonucle 66.4 36 0.00078 32.4 8.4 109 275-385 93-213 (230)
446 PF13041 PPR_2: PPR repeat fam 65.8 23 0.00051 24.0 5.5 29 643-671 4-32 (50)
447 PF10938 YfdX: YfdX protein; 65.2 69 0.0015 28.5 9.6 113 223-337 4-146 (155)
448 smart00777 Mad3_BUB1_I Mad3/BU 65.0 43 0.00092 28.5 7.7 80 493-583 45-124 (125)
449 cd02683 MIT_1 MIT: domain cont 63.6 65 0.0014 24.6 7.9 43 645-687 9-52 (77)
450 PF13041 PPR_2: PPR repeat fam 63.5 27 0.0006 23.7 5.5 29 433-461 4-32 (50)
451 PF10373 EST1_DNA_bind: Est1 D 63.4 1E+02 0.0022 30.5 11.8 62 536-612 1-62 (278)
452 cd02679 MIT_spastin MIT: domai 63.0 43 0.00094 25.7 6.7 54 605-669 13-66 (79)
453 COG1747 Uncharacterized N-term 62.7 2.2E+02 0.0048 30.5 21.9 167 311-504 69-235 (711)
454 PF01535 PPR: PPR repeat; Int 62.6 12 0.00026 22.0 3.2 27 644-670 2-28 (31)
455 KOG0546 HSP90 co-chaperone CPR 62.4 13 0.00029 37.1 4.9 123 563-701 227-360 (372)
456 PF01535 PPR: PPR repeat; Int 61.6 14 0.0003 21.7 3.3 27 602-628 2-28 (31)
457 PRK15180 Vi polysaccharide bio 61.4 1E+02 0.0022 32.4 11.0 120 320-461 301-420 (831)
458 KOG4521 Nuclear pore complex, 61.3 3.5E+02 0.0076 32.3 18.4 184 223-421 922-1132(1480)
459 KOG0530 Protein farnesyltransf 60.7 1.7E+02 0.0036 28.5 16.8 175 442-656 53-236 (318)
460 KOG1920 IkappaB kinase complex 60.6 3.6E+02 0.0079 32.3 28.1 25 604-628 1003-1027(1265)
461 PF10858 DUF2659: Protein of u 59.4 1.3E+02 0.0028 26.7 17.9 131 572-715 71-201 (220)
462 smart00777 Mad3_BUB1_I Mad3/BU 57.3 71 0.0015 27.2 7.8 81 240-333 44-124 (125)
463 TIGR00756 PPR pentatricopeptid 56.9 23 0.0005 21.3 3.9 27 602-628 2-28 (35)
464 TIGR00756 PPR pentatricopeptid 56.8 22 0.00048 21.3 3.8 27 644-670 2-28 (35)
465 TIGR02710 CRISPR-associated pr 56.4 2.5E+02 0.0055 29.2 14.2 59 563-624 135-195 (380)
466 cd02680 MIT_calpain7_2 MIT: do 56.3 72 0.0016 24.3 6.8 34 220-254 5-38 (75)
467 KOG0546 HSP90 co-chaperone CPR 55.8 19 0.00042 36.1 4.7 99 397-503 227-338 (372)
468 KOG0508 Ankyrin repeat protein 55.8 29 0.00063 36.2 6.1 72 332-403 319-390 (615)
469 KOG2758 Translation initiation 55.1 2.3E+02 0.005 28.3 15.7 186 213-421 121-317 (432)
470 smart00745 MIT Microtubule Int 54.5 93 0.002 23.6 8.2 31 647-677 13-43 (77)
471 KOG3024 Uncharacterized conser 54.1 2.3E+02 0.0049 27.9 12.9 134 569-708 17-150 (312)
472 KOG4279 Serine/threonine prote 53.6 1E+02 0.0022 34.5 9.8 180 431-629 200-395 (1226)
473 cd02678 MIT_VPS4 MIT: domain c 53.2 98 0.0021 23.4 8.1 43 646-688 10-53 (75)
474 cd02679 MIT_spastin MIT: domai 52.8 82 0.0018 24.2 6.7 35 518-552 9-43 (79)
475 KOG2758 Translation initiation 52.1 2.6E+02 0.0056 28.0 17.5 178 470-672 125-318 (432)
476 PF12309 KBP_C: KIF-1 binding 51.7 3E+02 0.0066 28.7 16.3 60 491-550 266-342 (371)
477 COG2912 Uncharacterized conser 51.5 1E+02 0.0023 30.0 8.8 68 430-505 179-246 (269)
478 PF13812 PPR_3: Pentatricopept 51.3 39 0.00084 20.3 4.2 27 602-628 3-29 (34)
479 KOG2582 COP9 signalosome, subu 51.2 85 0.0018 31.8 8.2 110 517-629 102-212 (422)
480 PF07163 Pex26: Pex26 protein; 50.9 2.5E+02 0.0055 27.6 13.8 139 310-456 37-182 (309)
481 KOG2063 Vacuolar assembly/sort 50.7 3.8E+02 0.0081 31.4 14.3 182 311-502 507-712 (877)
482 PRK12798 chemotaxis protein; R 50.6 3.2E+02 0.007 28.6 23.0 31 432-462 257-287 (421)
483 KOG4279 Serine/threonine prote 50.3 82 0.0018 35.1 8.6 182 516-717 200-398 (1226)
484 PF13812 PPR_3: Pentatricopept 50.0 41 0.00088 20.2 4.1 27 644-670 3-29 (34)
485 COG4455 ImpE Protein of avirul 49.6 2.3E+02 0.005 26.7 10.4 55 441-503 10-64 (273)
486 COG4455 ImpE Protein of avirul 48.9 90 0.002 29.3 7.5 55 608-670 9-63 (273)
487 TIGR02710 CRISPR-associated pr 47.4 3.5E+02 0.0076 28.2 14.5 58 271-332 136-195 (380)
488 smart00386 HAT HAT (Half-A-TPR 45.5 48 0.001 19.4 4.0 30 614-651 1-30 (33)
489 cd02656 MIT MIT: domain contai 45.5 1.3E+02 0.0028 22.7 8.2 31 647-677 11-41 (75)
490 PF07163 Pex26: Pex26 protein; 43.2 3.4E+02 0.0073 26.8 15.2 141 475-624 36-182 (309)
491 PF10938 YfdX: YfdX protein; 43.1 40 0.00086 30.0 4.4 109 520-628 5-145 (155)
492 KOG2034 Vacuolar sorting prote 42.5 6E+02 0.013 29.5 24.4 310 354-714 362-696 (911)
493 KOG0530 Protein farnesyltransf 41.7 3.5E+02 0.0075 26.5 19.7 117 365-503 58-176 (318)
494 PF09205 DUF1955: Domain of un 40.6 1.6E+02 0.0034 25.3 7.1 52 611-670 97-148 (161)
495 COG3899 Predicted ATPase [Gene 39.0 7.2E+02 0.016 29.4 36.7 260 220-503 438-706 (849)
496 KOG1938 Protein with predicted 39.0 2.7E+02 0.0058 32.4 10.7 99 528-629 286-384 (960)
497 cd02684 MIT_2 MIT: domain cont 38.5 1.8E+02 0.0038 22.1 8.3 42 648-689 12-54 (75)
498 KOG2709 Uncharacterized conser 38.0 1.7E+02 0.0036 30.3 8.1 33 600-632 22-54 (560)
499 KOG4422 Uncharacterized conser 37.2 5.2E+02 0.011 27.2 32.1 351 245-628 223-589 (625)
500 PF10858 DUF2659: Protein of u 37.2 3.1E+02 0.0066 24.5 15.6 147 487-654 70-216 (220)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-45 Score=363.62 Aligned_cols=426 Identities=20% Similarity=0.275 Sum_probs=275.6
Q ss_pred cccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh
Q 004811 202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281 (729)
Q Consensus 202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 281 (729)
+|.++.+--.-....+|.....++.++..+++..+ +++....-..|++.. |..+.+|.++|.++...|++
T Consensus 63 d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r-~d~s~a~~~~a~r~~---------~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 63 DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSR-LDKSSAGSLLAIRKN---------PQGAEAYSNLANILKERGQL 132 (966)
T ss_pred CHHHHHHHHhHhhccCCCcccceeeehhhhhcccc-hhhhhhhhhhhhhcc---------chHHHHHHHHHHHHHHhchH
Confidence 33333333333444444444444444444444443 455544444444432 44566666677777777777
Q ss_pred HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004811 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (729)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (729)
++|+.+|+.++++. +..+.+|.++|.++...|+.+.|..+|..++++ +|...-+...+|.++.
T Consensus 133 ~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 133 QDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhHHHH
Confidence 77777777776664 123445667777777777777777777777766 5666666666777776
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
..|+..+|..+|.+|++..+.. +.+|.+||.++...|+...|+.+|++|+. .+|....+|++||.+
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvk------ldP~f~dAYiNLGnV 261 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK------LDPNFLDAYINLGNV 261 (966)
T ss_pred hhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhc------CCCcchHHHhhHHHH
Confidence 6777777777777776665533 34566677777777777777777766654 356666667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
|...+.|+.|+..|.+|+.+ .|..+.++.++|.+|..+|..+-|+..|++++++ .|....+++
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------~P~F~~Ay~ 324 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------QPNFPDAYN 324 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc---------CCCchHHHh
Confidence 77777777777777777666 5666667777777777777777777777777666 444556677
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
+||..+...|+..+|..+|.+++.+.+.. +.+.++||.+|..+|.+++|..+|.++++.. +..+.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aa 389 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAA 389 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhh
Confidence 77777777777777777777777666555 4566667777777777777777777766653 22456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (729)
+.++||.+|.++|++++|+.+|++++.+ .|..++++.++|..|..+|+...|+..|.+|+.+ +|
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nP 453 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NP 453 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------Cc
Confidence 6666777777777777777777777766 6666777777777777777777777777777665 56
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..++++.+||.+|...|+..+|+ ..|+.+|+++|+
T Consensus 454 t~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPD 488 (966)
T KOG4626|consen 454 TFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCC
Confidence 66777777777777777777776 777777777666
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-43 Score=351.36 Aligned_cols=420 Identities=20% Similarity=0.253 Sum_probs=382.7
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
.........+|..+.++-.+|+.|..+|+ ++.|+.+|+.++++- |+.+++|.++|.++...|+.+.|...
T Consensus 103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 103 AGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 34455677889999999999999999998 999999999999863 67799999999999999999999999
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004811 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (729)
|..++++.+ ...-++..+|.++-.+|+..+|..+|.+|++. .|..+.+|.+||.++..+|+..
T Consensus 173 ~~~alqlnP---------~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~ 235 (966)
T KOG4626|consen 173 FFEALQLNP---------DLYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIW 235 (966)
T ss_pred HHHHHhcCc---------chhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHH
Confidence 999999972 23345778999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004811 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (729)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (729)
.|+.+|++|+.+.|... .+|.+||.+|...+.++.|+..|.+|+. ..|..+.++.++|.+|+.+|.
T Consensus 236 ~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred HHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEEEecccc
Confidence 99999999999988775 4699999999999999999999999975 478888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004811 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (729)
.+-|+..|++++++ .|....++.+||..+-..|+..+|..+|.+++.+ .+..+.++++||.+|
T Consensus 302 ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 302 LDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIY 364 (966)
T ss_pred HHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHH
Confidence 99999999999999 8999999999999999999999999999999999 445578999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004811 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (729)
..+|.+++|..+|.++++..+.. +.+..+||.+|..+|++++|+.+|++++.+ .+..+.++.++|
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmG 429 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMG 429 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcc
Confidence 99999999999999999998876 678899999999999999999999999997 355899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004811 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~ 687 (729)
..|..+|+...|+.+|.+|+.+ +|..++++.+||.+|...|+..+|+..|+.++++ .|+..+++
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~ 493 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAY 493 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhh
Confidence 9999999999999999999999 9999999999999999999999999999999988 68888999
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+|+.++.-..++.+-- +.+.++.++-.+
T Consensus 494 cNllh~lq~vcdw~D~d-~~~~kl~sivrd 522 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTDYD-KRMKKLVSIVRD 522 (966)
T ss_pred hHHHHHHHHHhcccchH-HHHHHHHHHHHH
Confidence 99999888777776655 555555554433
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.5e-31 Score=298.39 Aligned_cols=421 Identities=17% Similarity=0.152 Sum_probs=317.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.+..+..+|..++..|+ |++|+.+|++|+.+. |+ ...+.++|.||..+|++++|+..+++++++.
T Consensus 126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---- 190 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD---- 190 (615)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence 45678899999999997 999999999999863 22 3468899999999999999999999999985
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
++. ..+++.+|.+|..+|++++|+..|..++... .......... +...+. ..+...+..+++.
T Consensus 191 -p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~-----~~a~~~~~~~l~~ 253 (615)
T TIGR00990 191 -PDY----SKALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLLK-----KFAESKAKEILET 253 (615)
T ss_pred -CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHHH-----HHHHHHHHHHHhc
Confidence 333 3469999999999999999999997765441 0011110000 000000 1111111111111
Q ss_pred HHhcCCC-------------------------CCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004811 380 HKDNGSP-------------------------ASLEEAADRRLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 380 ~~~~~~~-------------------------~~~~~a~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
.+..... ........+..++..+ ...++|++|+..|++++... ...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~ 330 (615)
T TIGR00990 254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE 330 (615)
T ss_pred CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence 1110000 0000011233334332 23478999999999887532 235677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
+.++..+|.++..+|++++|+..|++++.+ +|....++..+|.++...|++++|+.+|++++++
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 394 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-------- 394 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 889999999999999999999999999998 7888899999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
.|....++..+|.++...|++++|+.+|++++.+.+.. ...+..+|.++..+|++++|+..|++++...
T Consensus 395 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 463 (615)
T TIGR00990 395 -NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF--- 463 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 33346789999999999999999999999999987654 4678899999999999999999999999863
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+....++..+|.++...|++++|+..|++++.+...... ........+...+.++...|++++|+.++++++.+
T Consensus 464 -----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 -----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred -----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 223578899999999999999999999999998222100 01111112222333445579999999999999976
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 672 ~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...++..||.++...|++++|+ ..|++++++.+.
T Consensus 538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART 574 (615)
T ss_pred --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence 5777888999999999999999999 999999998874
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-30 Score=268.31 Aligned_cols=421 Identities=40% Similarity=0.524 Sum_probs=359.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
.+.....++..++.....+..+.+.+....++++..++.... .....+......++..+.+++|....++......
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 455666778888888888777888888888888877665311 1112356667777788888888888877765431
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
...++..+...-+.+.....+...+.+..+..+..+|....+...++..|..+|+|+.|+..|+++
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111333333333444666777777777777788889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
+++..+..+. .++.+...+..+|.+|..++++.+|+..|+
T Consensus 226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9885443321 344555556679999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH
Q 004811 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (729)
+|+.+.+...|+++|..+.++.+||.+|...|++++|..++++|++++++ ..+..++.+...+.+++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 99999999999999999999999999999999999999999999999998 45788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004811 537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (729)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (729)
+.+++++++++.+.++... .++.++.+||.+|..+|+|++|.++|++|+.+.+...+.........++++|..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 9999999999998888887 899999999999999999999999999999999999888778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (729)
+.+|..+|.+++.+. ...|+++|+....|.+||.+|..+|++++|+++.++++...++.+|..+|........++....
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999998887777776654
Q ss_pred Hh
Q 004811 696 EA 697 (729)
Q Consensus 696 ~~ 697 (729)
..
T Consensus 504 ~~ 505 (508)
T KOG1840|consen 504 EA 505 (508)
T ss_pred Hh
Confidence 43
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.4e-31 Score=312.16 Aligned_cols=424 Identities=17% Similarity=0.170 Sum_probs=287.5
Q ss_pred cccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh
Q 004811 202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281 (729)
Q Consensus 202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 281 (729)
++..+...+.......|.....+..+|..+...|+ +++|+.+|+++++.. |....++..+|.++...|++
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCH
Confidence 33333333344444555566666666666666665 666666666666542 22344566666666667777
Q ss_pred HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004811 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (729)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (729)
++|+..|++++... +.+ ..++..++.++...|++++|+.++++++.. +|.....+..++.++.
T Consensus 516 ~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 516 DDAIQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHH
Confidence 77777776666553 222 223566666666677777777777666655 4555556666677777
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
..|++++|+..+++++...+.. ..++..+|.++...|++++|+..|++++.. .+....++..+|.+
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADA 644 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHH
Confidence 7777777777776666544322 245667777777777777777777766543 23334556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
+...|++++|+.+|++++.. .|....++..++.++...|++++|+.+++.+... .+.....+.
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~ 707 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---------HPKAALGFE 707 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCChHHHH
Confidence 77777777777777777765 4555666677777777777777777777666555 122344566
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.+|.++...|++++|+..|++++...+.. ..+..++.++...|++++|+..+++++... +....
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~ 771 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAV 771 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH
Confidence 77888888888888888888887764432 345667888888888888888887777641 11346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (729)
++..+|.+|...|++++|+.+|+++++. +|....++..++.++...|+ .+|+.++++++.+ .|
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~ 834 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------AP 834 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CC
Confidence 7788888888888888888888888887 67777788888888888888 7788888888875 35
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+....+..+|.++...|++++|. ..|+++++.+|.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 55666778888888888888888 888888888885
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-30 Score=305.87 Aligned_cols=442 Identities=20% Similarity=0.164 Sum_probs=247.8
Q ss_pred cccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811 196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
.+...+++..++..+.......|.....+..+|..+...|+ +++|+.+|++++... |....++..+|.++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD-FEKAAEYLAKATELD---------PENAAARTQLGISK 407 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------CCCHHHHHHHHHHH
Confidence 34445555555555555555556666666666666666665 666666666665431 22244455556666
Q ss_pred HHcCChHHHHHHHHHhcccchhhc-----------------------------cccchHHHHHHHHHHHHHHHHcCCHHH
Q 004811 276 CSLGQYNEAIPVLEQSIEIPVIEE-----------------------------GQEHALAKFAGHMQLGDTYAMLGQLEN 326 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~ 326 (729)
...|++++|+..|++++....... .+. ....+..+|.++...|++++
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD----NASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CcHHHHHHHHHHHhCCCHHH
Confidence 666666666666665554431100 001 11235556666666666666
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhC
Q 004811 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG 406 (729)
Q Consensus 327 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g 406 (729)
|+.+|+++++. +|....++..++.++...|++++|+..|++++...+.. ..++..++.++...|
T Consensus 484 A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 484 AREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--------LRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHcC
Confidence 66666666655 45555566666666666666666666666666554332 233555555555556
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
++++|+.++.+++.. .+.....+..++.++...|++++|+.++++++.. .|....++..+|.++..
T Consensus 548 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 548 NEEEAVAWLEKAAEL------NPQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLA 613 (899)
T ss_pred CHHHHHHHHHHHHHh------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 666665555555432 1222233444555555555555555555554443 33334445555555555
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC---------------
Q 004811 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------- 551 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------- 551 (729)
.|++++|+..|+++++.. +....++..++.++...|++++|+.+|++++...+...
T Consensus 614 ~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred cCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 555555555555555441 11223444555555555555555555555544332210
Q ss_pred ------------CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 004811 552 ------------GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619 (729)
Q Consensus 552 ------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 619 (729)
...+.....+..+|.++...|++++|+..|++++.... . ...+..++.++...|++++|
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-----S----SQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----C----chHHHHHHHHHHHCCCHHHH
Confidence 00001123445566666666666666666666665411 1 13455566777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+..+++++.. +|....++..+|.+|...|++++|+.+|+++++. +|....++..++.++...|+
T Consensus 756 ~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 756 VKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc
Confidence 7777776665 5666667777777777777777777777777765 45666677777777777777
Q ss_pred HhHHHHHHHHHHHhhccc
Q 004811 700 VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 700 ~~~A~~~~l~~al~~~p~ 717 (729)
.+|+ ..+++++.+.|+
T Consensus 820 -~~A~-~~~~~~~~~~~~ 835 (899)
T TIGR02917 820 -PRAL-EYAEKALKLAPN 835 (899)
T ss_pred -HHHH-HHHHHHHhhCCC
Confidence 6677 777777777766
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.9e-30 Score=289.47 Aligned_cols=414 Identities=18% Similarity=0.131 Sum_probs=314.4
Q ss_pred cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
..+..+...++|..|+..+..+....|+ ...+..+|.++...|+ +++|+..+.+|+++. |+...++..+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~~~ 200 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALNRR 200 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHHHH
Confidence 4455667778889999888888888886 6789999999999998 999999999999863 5567889999
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------
Q 004811 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK------------ 339 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------ 339 (729)
|.+|..+|++++|+..|..++.+.. ...... ...+. ..+. ..+...+..++....
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~----~~~~~~-~~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDG----FRNEQS-AQAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CccHHH-HHHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 9999999999999999987765531 111100 00000 0000 011111111111000
Q ss_pred -HH------------hCCCCchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004811 340 -QV------------LGETDPRVGETCRYLAEAHV---QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (729)
Q Consensus 340 -~~------------~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~ 403 (729)
.. ....++.....+..++..+. ..++|++|+..|++++.... ..+..+.++..+|.++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKC 342 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHH
Confidence 00 00002223333444443332 34689999999999997651 12344678999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (729)
.+|++++|+..|++++.+ .|.....+..+|.++...|++++|+.+|++++++ +|....++..+|.+
T Consensus 343 ~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 343 LKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQL 408 (615)
T ss_pred HcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999999999999864 5666778999999999999999999999999998 67788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 004811 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (729)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (729)
+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++++...+.. ..++..
T Consensus 409 ~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~ 472 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNY 472 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHH
Confidence 99999999999999999998 34456778999999999999999999999999887655 467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
+|.++...|++++|+..|++++.+.+...... ......+...+.++...|++++|+.+|++++.+ +|+...
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~ 543 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDI 543 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHH
Confidence 99999999999999999999998754322211 111122233333444579999999999999998 788888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
++..+|.++..+|++++|+.+|++++++.+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998853
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-29 Score=300.49 Aligned_cols=455 Identities=15% Similarity=0.063 Sum_probs=345.3
Q ss_pred CcccccccccccccCcccccCCCCCCChHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLL-KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~-~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
.+..+...+++.+|++.+......+|.....-. .........|+ +++|+..++++++.. |....++..+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~L 187 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNTL 187 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHHH
Confidence 344566778888888777777777776653222 12222233576 999999999988864 4446678889
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhc-------------c----------------ccch-HHHH-H-----------
Q 004811 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEE-------------G----------------QEHA-LAKF-A----------- 309 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~----------------~~~~-~~~~-~----------- 309 (729)
|.+++..|++++|+..|++++....... . +... .... .
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999865421000 0 0000 0000 0
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811 310 ---GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 310 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
....+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+.+|+++++..+.....
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 0124488899999999999999999998 68889999999999999999999999999999987765432
Q ss_pred CCHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 387 ASLE------EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 387 ~~~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
.... .......+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|+++++
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1100 1122345688899999999999999999875 344557888999999999999999999999997
Q ss_pred HHHHhcCCCChhHHH------------------------------------------HHHHHHHHHHHcCCHHHHHHHHH
Q 004811 461 AFKTNKGENHPAVAS------------------------------------------VFVRLADMYNRTGKLRESKSYCE 498 (729)
Q Consensus 461 ~~~~~~~~~~~~~~~------------------------------------------~~~~la~~~~~~g~~~~A~~~~~ 498 (729)
+ .|.... .+..+|.++...|++++|+..|+
T Consensus 414 ~--------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 414 M--------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred h--------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 222222 23345666778899999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004811 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (729)
Q Consensus 499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (729)
+++++ .|....+++.+|.+|...|++++|+..+++++...+.. ...++.++..+...+++++|+
T Consensus 486 ~Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 486 QRLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHH
Confidence 99988 33445678999999999999999999999998865543 244555666666677777776
Q ss_pred HHHHHHH-------------------------------------HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 579 DSFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE 621 (729)
Q Consensus 579 ~~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (729)
.+++++. .+++. . +.....+..+|.++...|++++|+.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~-p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----Q-PPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----C-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 6655421 11111 1 1123467889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
+|+++++. +|+...++..++.+|...|++++|+..|++++.. .|+...++..+|.++...|+++
T Consensus 625 ~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 625 AYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHH
Confidence 99999998 8888899999999999999999999999988754 5777788899999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 004811 702 SRKAQSLETLLDANSR 717 (729)
Q Consensus 702 ~A~~~~l~~al~~~p~ 717 (729)
+|. ..|++++...|+
T Consensus 689 eA~-~~~~~al~~~~~ 703 (1157)
T PRK11447 689 AAQ-RTFNRLIPQAKS 703 (1157)
T ss_pred HHH-HHHHHHhhhCcc
Confidence 999 999999998765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.4e-29 Score=296.27 Aligned_cols=448 Identities=14% Similarity=0.115 Sum_probs=343.1
Q ss_pred cccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcCC----------
Q 004811 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGANG---------- 258 (729)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~~---------- 258 (729)
.+++.++++.+..+...+|+...+++.+|..++..|+ +++|+..+++++... ..+...
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 4666778888888999999999999999999999997 999999999875421 000000
Q ss_pred ------CCC-HhHHH-----------------HHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHH
Q 004811 259 ------KPS-LELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL 314 (729)
Q Consensus 259 ------~~~-~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 314 (729)
.+. +.... ....+|.++...|++++|+..|+++++.. +.++ .++..+
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~L 309 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGAL 309 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHH
Confidence 000 10000 11234888999999999999999999885 4333 358999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811 315 GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 315 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
|.++..+|++++|+.+|+++++..+. .+. .......+|.++...|++++|+.+|++++.+.|..
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999987321 111 11223456888999999999999999999987644
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC------------hh---------------------
Q 004811 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD------------AE--------------------- 430 (729)
Q Consensus 384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~--------------------- 430 (729)
..++..+|.++...|++++|+.+|++++.+....... +.
T Consensus 385 --------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 385 --------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3568899999999999999999999997542211000 00
Q ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 431 ---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 431 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
....+..+|.++...|++++|+..|++++++ .|....+++.+|.+|...|++++|+..|++++...
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--- 525 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--- 525 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 0122345677788899999999999999998 78888999999999999999999999999998862
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------------------HHHHhC
Q 004811 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYNDA 550 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~~ 550 (729)
|.....++.++.++...+++++|+.+++++. .+....
T Consensus 526 ------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 526 ------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred ------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 2223445556666666666666666554321 111111
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
+ ....++..+|.++...|++++|+.+|+++++.. +....++..++.++...|++++|+.+|++++..
T Consensus 600 p----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 600 P----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred C----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 1 113456789999999999999999999999862 224578999999999999999999999998877
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh---hHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004811 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP---DVDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
.|+...++..+|.++..+|++++|+.+|++++... +.+| ..+.++..+|.++...|++++|+ ..
T Consensus 667 -------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~ 733 (1157)
T PRK11447 667 -------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ET 733 (1157)
T ss_pred -------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 67777889999999999999999999999998753 2222 24567778899999999999999 99
Q ss_pred HHHHHh
Q 004811 708 LETLLD 713 (729)
Q Consensus 708 l~~al~ 713 (729)
|++++.
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 999985
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=4.9e-29 Score=262.33 Aligned_cols=460 Identities=17% Similarity=0.160 Sum_probs=367.6
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
..+..+-..+|.++.++..+++.++..|+ |..+..++..|+... ...+..+..++.+|.+|..+|+|++|..+
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44555667788889999999999999997 999999999988763 23356678899999999999999999999
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---
Q 004811 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--- 364 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 364 (729)
|.+++... +++ .+-.++.+|.+|...|+++.|+.+|++++.. .|...++...||.+|...+
T Consensus 330 Y~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 330 YMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhh
Confidence 99999886 222 1224889999999999999999999999988 6889999999999998876
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004811 365 -QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 365 -~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
..+.|..++.++++..+.. ..+|..++.++....-+.. +.+|..|+.++...... .-...++++|..++
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHF 463 (1018)
T ss_pred HHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHH
Confidence 5678888888888776444 4668999998876655555 99999999777766554 44678899999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811 444 SLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
..|++.+|..+|..|+..+......+. .......+++|.++...++++.|...|...+.. +|....++.
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~yl 534 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDAYL 534 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHHHH
Confidence 999999999999999998654332222 233556899999999999999999999999998 778889999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-----------------------------cHHHHHHHHHHHHHHc-
Q 004811 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----------------------------TVAGIEAQMGVMYYML- 571 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~~- 571 (729)
.+|......+...+|..++..++.+....+.... .-+.++..||.+|+..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 9998888889999999999988876544321110 0123344566666542
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 572 ----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 572 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
.+.+.+..++.+|++++.+....+|. ...+-+.+|.++...|++.+|+..|.++.+. ..+...+|.+
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--------~~~~~dv~lN 685 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREA--------TSDFEDVWLN 685 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHH--------HhhCCceeee
Confidence 33455667777777776655444433 5678899999999999999999999999887 3345568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccc
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIEL 725 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~ 725 (729)
||.||..+|+|..|++.|+.++..+- ..+...++..||+++.+.|.+.+|. .++..++.+.|. ...++++.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999999999998752 2345778899999999999999999 999999999998 55555554
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-28 Score=239.51 Aligned_cols=397 Identities=17% Similarity=0.159 Sum_probs=311.3
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+..+-..|+.+++.|. |++||.||.+|+.+. |+.+..|.+++.||...|+|++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 567788999999999997 999999999999985 2335669999999999999999999999999997
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHH-----HHHHhCC-CCchHH----
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY------------------TTGLEV-----QKQVLGE-TDPRVG---- 350 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~~~-~~~~~~---- 350 (729)
+ ....++++.+.++..+|++.+|+... ++.|.. ....++. ..|..+
T Consensus 180 --P----~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 180 --P----DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred --c----HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 3 34557999999999999999987533 222221 1222221 111111
Q ss_pred -HHHH--------------------HHHHH--HHHh---cCHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHH
Q 004811 351 -ETCR--------------------YLAEA--HVQA---LQFSEAQKFCQMALDIHKDNGSP-----ASLEEAADRRLMG 399 (729)
Q Consensus 351 -~~~~--------------------~la~~--~~~~---g~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~lg 399 (729)
..++ .+... +... ..|.+|...+.+........... .....+.++...|
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 1111 01111 1111 25666666666655444332221 1223477889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
..++..|++-.|.+.|..++.+ ++.....|..+|.+|....+..+-...|.+|..+ +|..+.+|+.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH 399 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH 399 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence 9999999999999999999864 3444455899999999999999999999999999 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
.|++++.++++++|+..|++++.+ .|..+..+..++.+.+++++++++...|+.+...+|.. ..
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E 463 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence 999999999999999999999999 77788999999999999999999999999999999887 47
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
++...|.++..+++|++|++.|..|+++.+....... .+..+...|.+.. ..+++..|+.++++|+++ +
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D 533 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D 533 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence 8889999999999999999999999998654222111 1122333332222 348999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
|..-.++..||.+..++|+.++|+++|++++.+.+.
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988653
No 12
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.97 E-value=7.8e-27 Score=241.36 Aligned_cols=291 Identities=22% Similarity=0.295 Sum_probs=271.6
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
......|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++.+|+.+|++|+.
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
+.+..+ |.+++..+.++.+||.+|...|++++|..++++|+++.....+..+ .++..+.+++.++..++++++|..++
T Consensus 270 i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 270 IREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 999876 8889999999999999999999999999999999999998766554 67778899999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004811 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (729)
+++++++....+..+...+.++.+||.+|..+|++.+|.++|++|+.+.++..+..++.....+..||..|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 99999999877777777899999999999999999999999999999999998888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811 662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
..+|.++..+. +.+|+++|+....+.+|+.+|..+|++++|. ++.+.++...-
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~ 481 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999 99998886543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-26 Score=243.54 Aligned_cols=433 Identities=15% Similarity=0.179 Sum_probs=358.1
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
..+.-....+|++..+|+..|...|..++ |..|+.+|.+|+.+.+... +.....+|.|++.+|+.+.|+..
T Consensus 151 a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 151 AQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHH
Confidence 56667788899999999999999999997 9999999999999865542 22245678999999999999999
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004811 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (729)
|++++++. + ..+.++..||.+-....+ +..++..+.++... ++..+.++..|+..|+..|
T Consensus 222 ~~ralqLd-----p----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 222 FERALQLD-----P----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHHHhcC-----h----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcc
Confidence 99999997 2 345567778877665544 45566666666655 5788899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
+|..+..+...++.... .....+..++.+|..|..+|+|++|..+|.+++... +......++.+|.+|..
T Consensus 285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhHHHHH
Confidence 99999999999987662 224457789999999999999999999999887531 22245677899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
.|+++.|..+|++++.. .|....++..||.+|...+ ..+.|..++.++++. .+....+|
T Consensus 355 ~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~ 417 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAW 417 (1018)
T ss_pred hchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHH
Confidence 99999999999999998 7888999999999999886 567777777777776 34557899
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC--hH
Q 004811 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS--AF 598 (729)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~ 598 (729)
..++.++....-+.. +.+|..|+.+....... .-..+++++|..++..|++.+|...|.+|+..+....+.+. ..
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 999999987665555 99999999888876333 33578899999999999999999999999998553322221 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
.....+++|.++...++++.|.+.|...+.. +|....++..||......++..+|..++..++.+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~------- 559 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI------- 559 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------
Confidence 3456889999999999999999999999998 9999999999998888899999999999999976
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+..++.++..+|.++....++..|. .-|+..++
T Consensus 560 -d~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~ 592 (1018)
T KOG2002|consen 560 -DSSNPNARSLLGNLHLKKSEWKPAK-KKFETILK 592 (1018)
T ss_pred -ccCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHh
Confidence 4566678888999999999999998 86666654
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=2.9e-25 Score=252.13 Aligned_cols=436 Identities=13% Similarity=0.032 Sum_probs=330.1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
..+|...........+....|+ +++|+..|.++...- +..+.++..+|.++...|++++|+.+|++++.+
T Consensus 9 ~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 9 LKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred hccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666777778888897 999998888887531 334667889999999999999999999999988
Q ss_pred chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQ 374 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (729)
. +..+. ++..+|.++...|++++|+..+++++.. .|.... +..+|.++...|++++|+..++
T Consensus 79 ~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 79 E-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred C-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 5 44332 4778999999999999999999999998 688888 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-----HcCCH-
Q 004811 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL-----SLSRY- 448 (729)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~- 448 (729)
+++++.|... .++..++.++...+..+.|+..++++.. .... ...........+..++. ..+++
T Consensus 141 ~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 141 QALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 9999987753 4577889999999999999998876542 0000 00000111122222222 22345
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 004811 449 --DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (729)
Q Consensus 449 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (729)
++|+..++.++....... ...+....+.......+...|++++|+..|+++++. +...|..+. ..+|.+
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~------~~~~P~~a~--~~la~~ 281 (765)
T PRK10049 211 IADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAE------GQIIPPWAQ--RWVASA 281 (765)
T ss_pred HHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCCCHHHH--HHHHHH
Confidence 678888888776643211 112333444444233446779999999999998776 222233333 336889
Q ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCCC-ChHH
Q 004811 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GERK-SAFF 599 (729)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~-~~~~ 599 (729)
|...|++++|+.+|++++...+.. ..........++.++...|++++|+.+++++....+.. .... ....
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 999999999999999988643221 11112345667778899999999999999988753210 0001 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (729)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-------- 422 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-------- 422 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------
Confidence 456778999999999999999999999998 8888899999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...+++.+|.++...|++++|. ..++.+++.+|+
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd 459 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ 459 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 6888889999999999999999999 999999999998
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.4e-25 Score=246.07 Aligned_cols=362 Identities=13% Similarity=0.028 Sum_probs=279.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (729)
+...+..+...|++++|+..++.++... +.++. +++.+|.+....|++++|+..|++++.. +|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV--------NV 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence 4445677888899999999999988775 44443 4788888888999999999999999988 78
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
....++..+|.++...|++++|+..|++++.+.|.. ..++..++.++...|++++|+..+.+++.. .++
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~--------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~ 176 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN--------SQIFALHLRTLVLMDKELQAISLARTQAQE---VPP 176 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC
Confidence 888899999999999999999999999999887654 245888899999999999999988866542 222
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
. ...+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..|++++..
T Consensus 177 ~---~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---- 241 (656)
T PRK15174 177 R---GDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---- 241 (656)
T ss_pred C---HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 2 23333333 4778899999999988877651 1122234456678888999999999999999887
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHH----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 508 VPGVPPEEIASGLTDVSSIYESMNELEQ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
.|....++..+|.++...|++++ |+..|++++.+.|.. ..++..+|.++...|++++|+.++++
T Consensus 242 -----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 242 -----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33346778889999999999885 788999998886654 57788899999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
++.+. +....++..+|.++...|++++|+..|++++.. +|.....+..+|.++...|++++|+.
T Consensus 310 al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 88762 223467788899999999999999999999887 77776667778889999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004811 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703 (729)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A 703 (729)
.|+++++...... .+....+...+...+...+...+.
T Consensus 374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence 9999988743322 223334555555555555555444
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.7e-25 Score=248.53 Aligned_cols=336 Identities=13% Similarity=0.087 Sum_probs=289.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
....+..+...|++++|+..++..+.. .|....+++.+|.+....|++++|+..|++++...|...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------ 110 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------ 110 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------
Confidence 445677788999999999999999988 688899999999999999999999999999999987764
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
.++..+|.++...|++++|+..|++++.+ .|....++..++.++...|++++|+..+++++.. .
T Consensus 111 --~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~ 174 (656)
T PRK15174 111 --EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------V 174 (656)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------C
Confidence 45899999999999999999999999864 4555678889999999999999999999988776 4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
|.....+..++ .+...|++++|+..+++++..... ........++.++...|++++|+..|++++...+..
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 55555665554 478899999999999998776211 112234567888999999999999999999875443
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 551 PGQQSTVAGIEAQMGVMYYMLGNYSD----SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (729)
..++..+|.++...|++++ |+..|++++.+. +....++..+|.++...|++++|+.+++++
T Consensus 246 -------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 -------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred -------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5778899999999999986 799999998862 224678999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH
Q 004811 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ 706 (729)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 706 (729)
+.. +|+...++..+|.+|...|++++|+..|++++.. +|.....+..+|.++...|++++|+ .
T Consensus 311 l~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~ 373 (656)
T PRK15174 311 LAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-S 373 (656)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-H
Confidence 998 8888889999999999999999999999999875 5776667777899999999999999 9
Q ss_pred HHHHHHhhccc
Q 004811 707 SLETLLDANSR 717 (729)
Q Consensus 707 ~l~~al~~~p~ 717 (729)
.|+++++.+|+
T Consensus 374 ~l~~al~~~P~ 384 (656)
T PRK15174 374 VFEHYIQARAS 384 (656)
T ss_pred HHHHHHHhChh
Confidence 99999999997
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.7e-25 Score=214.32 Aligned_cols=392 Identities=18% Similarity=0.148 Sum_probs=301.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
+..+-..|.-+++.|+|++|+.+|.+|+++. ++.|. .|.+++-||...|+|++.++...+++++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi----FYsNraAcY~~lgd~~~Vied~TkALEl------- 178 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI----FYSNRAACYESLGDWEKVIEDCTKALEL------- 178 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch----hhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 4456678999999999999999999999997 44343 2889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHH------------------HHHHHH---------HhcCCC--CCHHHHHHH
Q 004811 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQ------------------MALDIH---------KDNGSP--ASLEEAADR 395 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~~---------~~~~~~--~~~~~a~~~ 395 (729)
+|+...+++..+.++..+|++++|+.-.. +.|... ..+..+ ++......+
T Consensus 179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 89999999999999999999998865432 111110 001111 000001111
Q ss_pred HH--------------------H--HHHHHHhC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHHH
Q 004811 396 RL--------------------M--GLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSIGDTYL 443 (729)
Q Consensus 396 ~~--------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~la~~~~ 443 (729)
+. + +.-+...+ .|..|...+.+.......... ....+.++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 10 0 11111112 455666665555432221111 1344778888999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004811 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (729)
..|++-.|...|+.++.+ +|.....|..+|.+|....+.++-...|.+|..+ +|....+|+..
T Consensus 338 L~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~dvYyHR 400 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPDVYYHR 400 (606)
T ss_pred hcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCchhHhH
Confidence 999999999999999998 6777777999999999999999999999999999 55557789999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004811 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (729)
|.+++-++++++|+.-|++++.+.|.. +..+..++.+.+++++++++...|+.++..++. .+.++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy 465 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY 465 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH
Confidence 999999999999999999999998877 577889999999999999999999999987532 46788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (729)
...|.++..+++|++|++.|..|+++-...... +- .+..+..-|.+. .-.+++..|+.++++|+++ +|.
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpk 535 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPK 535 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cch
Confidence 889999999999999999999999983221110 00 222222222222 2348999999999999987 899
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.-.++..||.+..++|+.++|+ +.|++++.+-.
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAi-elFEksa~lAr 568 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAI-ELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999 99999887654
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.6e-24 Score=242.51 Aligned_cols=459 Identities=12% Similarity=0.018 Sum_probs=334.2
Q ss_pred cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
..+......|++..++..+..+...+|+...+++.++..++..|+ +++|+.++++|++.. |.....+..+
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L 118 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL 118 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence 344455666888888899999999999999999999999999998 999999999999862 3334444445
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHH-------------------------------HHHHHHHHHHHHHH
Q 004811 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM 320 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~ 320 (729)
+.+ +++++|+..|++++...+.......... .....+.++.+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 444 8888999999888877532111110000 01124445889999
Q ss_pred cCCHHHHHHHHHHHHHHH--------------HH---------HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811 321 LGQLENSLMCYTTGLEVQ--------------KQ---------VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 321 ~g~~~~A~~~~~~al~~~--------------~~---------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
+|++++|+..+.++++.. .. ...+.-.....++..++..|...|+.++|...+++.-
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999888876541 00 0000001233455567778888888888877765532
Q ss_pred HHHHhcCCCC----------------------------------------------------------C-----------
Q 004811 378 DIHKDNGSPA----------------------------------------------------------S----------- 388 (729)
Q Consensus 378 ~~~~~~~~~~----------------------------------------------------------~----------- 388 (729)
...+...... .
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 2211100000 0
Q ss_pred ------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------HH-------Hh---------
Q 004811 389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IA--------- 424 (729)
Q Consensus 389 ------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~-------~~--------- 424 (729)
+.....+..++......|++++|...|+++.. +. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 00012233345555667888888887776643 11 00
Q ss_pred ---------------------------------CCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 425 ---------------------------------NDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 425 ---------------------------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
.+..|. ...++..+|.++.. +++.+|+..+.+++..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-------- 505 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-------- 505 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence 011122 55677888888877 7888899988888877
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|.. .....+|.++...|++++|+..|++++... .. ...+..+|.++...|++++|+.+|++++...+.
T Consensus 506 ~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~------p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 506 QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHD------MS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccC------CC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 4543 346667777789999999999999875541 11 123678899999999999999999999886433
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ...+..++..+...|++++|+..|++++++. + . ..++..+|.++.+.|++++|+..|++++.+
T Consensus 575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-------P-~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA-------P-S-ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------C-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 2444456666667799999999999999862 2 2 568899999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+|+...++.++|.++...|++++|+..|++++++ +|+...+++++|.++...|++++|. ..|+
T Consensus 639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~ 701 (987)
T PRK09782 639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYAR 701 (987)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence 8999999999999999999999999999999987 6888999999999999999999999 9999
Q ss_pred HHHhhccc
Q 004811 710 TLLDANSR 717 (729)
Q Consensus 710 ~al~~~p~ 717 (729)
++++++|+
T Consensus 702 ~Al~l~P~ 709 (987)
T PRK09782 702 LVIDDIDN 709 (987)
T ss_pred HHHhcCCC
Confidence 99999998
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.2e-23 Score=239.07 Aligned_cols=414 Identities=13% Similarity=-0.015 Sum_probs=314.2
Q ss_pred cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004811 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (729)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (729)
.-.|+...+++.+......+|..+.++..+|..+...|+ +++|+.+|++++... |....++..++.++..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 345555566666677776788889999999999999997 999999999999863 3335567889999999
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004811 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (729)
.|++++|+..++++++.. ++++ . +..+|.++...|++++|+..++++++. .|....++..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la 157 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYV 157 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 999999999999999875 3332 3 778999999999999999999999999 788899999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HHhCCH---HHHHHHHHHHHHHHHhCCC-C
Q 004811 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-----ETKGDH---EAALEHLVLASMTMIANDQ-D 428 (729)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~-----~~~g~~---~~A~~~~~~al~~~~~~~~-~ 428 (729)
.++...+..++|+..++++.. .|.... .........+..++ ...+++ ++|+..++.++........ .
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 999999999999999987664 222100 00000111122222 222345 7788888887765433322 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+....+.......+...|++++|+..|++++.. ++..|..+. ..+|.+|...|++++|+.+|++++.....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~-- 304 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET-- 304 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC--
Confidence 334444444233446779999999999998775 111244433 33689999999999999999998865211
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC-------CCC-CcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQQ-STVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
...........++.++...|++++|+.+++++....|... ..+ .....++..++.++...|++++|+..
T Consensus 305 ---~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 305 ---IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred ---CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1011134566777888999999999999999988754211 111 12345677899999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
+++++... +....++..+|.++...|++++|+..+++++.+ +|+...+++.+|.++...|++++
T Consensus 382 l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 382 ARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence 99998762 223578999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004811 661 AIEILEFVVGI 671 (729)
Q Consensus 661 A~~~~~~al~~ 671 (729)
|...++++++.
T Consensus 446 A~~~~~~ll~~ 456 (765)
T PRK10049 446 MDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 20
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9.4e-24 Score=203.89 Aligned_cols=422 Identities=14% Similarity=0.105 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
..+++.++..|-... .+.+|+..|+-.++ ..--|+....-.++|.+|++..+|.+|+.+|+.++...+..
T Consensus 201 fsvl~nlaqqy~~nd-m~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-- 270 (840)
T KOG2003|consen 201 FSVLFNLAQQYEAND-MTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-- 270 (840)
T ss_pred HHHHHHHHHHhhhhH-HHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--
Confidence 456778887665554 36666666655443 22224445556789999999999999999999999765322
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
.....+.++.++|..+.+.|+|++|+..|+.+++. .|... +-++|..+++..|+-++-.+.|++.+.+-
T Consensus 271 --nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 271 --NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred --chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 22356777999999999999999999999999988 46554 45667778888899888888888887653
Q ss_pred HhcCCC---------CCHHHH-----------------------------------------------------------
Q 004811 381 KDNGSP---------ASLEEA----------------------------------------------------------- 392 (729)
Q Consensus 381 ~~~~~~---------~~~~~a----------------------------------------------------------- 392 (729)
....+. +....-
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI 419 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence 221111 000000
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
..-.+.+..+.+.|+++.|++.+.-. ... +......+-.+|..+++.+| ++.+|..+...++.+ +
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~----~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------d 486 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVF----EKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------D 486 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHH----Hhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------c
Confidence 00011233455667777777665322 111 22222233344444444432 566666666666665 5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
...+.++.+.|.+-+..|++++|.+.|++++.- +.....+++++|..+..+|+.++|+.+|-+.-.+....
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 556667777777777888888888888888765 44456778888888888888888888888777776655
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
+.++..++.+|..+.+..+|++++.++..+.+ ..+.++..||.+|-+.|+-.+|..++-.....
T Consensus 558 -------~evl~qianiye~led~aqaie~~~q~~slip--------~dp~ilskl~dlydqegdksqafq~~ydsyry- 621 (840)
T KOG2003|consen 558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIP--------NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY- 621 (840)
T ss_pred -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--------CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-
Confidence 57777888888888888888888877766531 23456777888888888888888777776666
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
.|-..++...||..|....-+++|+.+|+++.-+ .|........++.++.+.|+|.+|. ..|+.
T Consensus 622 -------fp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~-d~yk~ 685 (840)
T KOG2003|consen 622 -------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAF-DLYKD 685 (840)
T ss_pred -------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHH-HHHHH
Confidence 6777777777888888777788888888877654 5777777777788888888888888 88877
Q ss_pred HHhhccc
Q 004811 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
.....|+
T Consensus 686 ~hrkfpe 692 (840)
T KOG2003|consen 686 IHRKFPE 692 (840)
T ss_pred HHHhCcc
Confidence 7777775
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=2.4e-20 Score=207.37 Aligned_cols=438 Identities=12% Similarity=-0.002 Sum_probs=324.4
Q ss_pred cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004811 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (729)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (729)
-.....|..+...+..+...++.|+ ++.|+..|+++++.. |........++.++...|++++|+.+++++
T Consensus 25 ~~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 25 SGFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred cccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 3445667788899999999999997 999999999999864 222212226777888889999999999999
Q ss_pred cccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004811 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (729)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (729)
+.-. +.. ...+..+|.++...|++++|+..|+++++. +|....++..++.++...++.++|+.
T Consensus 95 ~~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 95 QSSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred ccCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 8321 111 223556688999999999999999999998 78888888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (729)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (729)
.+++++...+... .+..++.++...++..+|++.+++++.. .|....++..+..++...|-...|
T Consensus 158 ~l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 158 QATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred HHHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHH
Confidence 9999988876531 2344455555577777799999988754 222223333333333333332222
Q ss_pred HH-----------------------------------------HHHHHHHHHHHhcC------CCChhHHHHHHHHHHHH
Q 004811 452 GF-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMY 484 (729)
Q Consensus 452 ~~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~ 484 (729)
.+ ..++++........ +.++....+....-.++
T Consensus 223 ~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 223 LRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 22 23334433333321 12334455666667778
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004811 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (729)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (729)
...|++.+++..|+..... +..-|. .+...+|..|...++.++|+.+|.+++.-.+........ ......|
T Consensus 303 ~~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L 373 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDL 373 (822)
T ss_pred HHhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHH
Confidence 8889999999999876655 222233 356778999999999999999999987755322111111 2223577
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH-h---C---CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 565 GVMYYMLGNYSDSYDSFKNAISKLRA-I---G---ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~-~---~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
...|...++|++|..++++..+..+- . + ....+........++.++...|++.+|.+.+++.+..
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-------- 445 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-------- 445 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 88899999999999999998873220 0 0 1223345678888899999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.|.+..++..+|.++...|.+.+|...++.+..+ +|+...+...++.++..+|++++|. .....+++..|+
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe 516 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE 516 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence 8999999999999999999999999999888765 7999999999999999999999999 999999999998
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.9e-21 Score=220.47 Aligned_cols=361 Identities=13% Similarity=0.001 Sum_probs=287.0
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCC---HHHHH----------
Q 004811 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSL---------- 328 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~---------- 328 (729)
|.....+..++......|++++|..+|+++...... ... .......++.+|...+. ..+++
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----ARL--SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----ccc--CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 334667888999999999999999999999985311 111 11224477777776655 33332
Q ss_pred ------------HHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004811 329 ------------MCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394 (729)
Q Consensus 329 ------------~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 394 (729)
..+..+... ++ ..|. ...++..+|.++.. +++.+|+..+.+++...|.. ..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---------~~ 511 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---------WQ 511 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------HH
Confidence 222222222 22 2456 88899999999987 89999999999999887642 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (729)
Q Consensus 395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (729)
...+|.++...|++++|+..|+++... .+. ...+..+|.++...|++++|+.+|++++.. .|...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccH
Confidence 666778888999999999999986431 111 234678899999999999999999999987 56666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004811 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
..+..++..+...|++++|+..|++++++ .|. ...+.++|.++...|++++|+..|++++.+.|+.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---- 642 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---- 642 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----
Confidence 66667777777789999999999999988 333 5688999999999999999999999999998766
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (729)
..++.++|.++...|++++|+.+|++++++. +....++.++|.++...|++++|+.+|++++++
T Consensus 643 ---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l----- 706 (987)
T PRK09782 643 ---SNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD----- 706 (987)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 5788999999999999999999999999872 234678999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCH
Q 004811 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~ 700 (729)
.|+...+....|.+.....+++.|.+.+.++..+ +|... +....|.++...+++
T Consensus 707 ---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 707 ---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred ---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccc
Confidence 8999999999999999999999999999998865 34444 666777777776665
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.6e-23 Score=208.29 Aligned_cols=303 Identities=16% Similarity=0.118 Sum_probs=242.9
Q ss_pred HHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 352 TCRYLAEAHVQ--ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 352 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
.+..+|..|.. +-+..+|+..|.+.-..... ...++..+|..|+.+++|++|..+|+.+.++. |
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n--------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p 384 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN--------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------P 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------c
Confidence 34444444433 23567888888873222222 23678899999999999999999998775432 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
......-....+++.+.+--+--.+.+..++. +|..+..|..+|.+|..+++++.|+++|++|+++
T Consensus 385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------ 450 (638)
T KOG1126|consen 385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------ 450 (638)
T ss_pred ccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------
Confidence 11111112223333333322222222333333 7888899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
+|..+.+|..+|.=+.....+|.|..+|+.|+.+.+++ ..+|+.+|.+|.++++++.|.-+|++|+++
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-- 518 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-- 518 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC--
Confidence 66678899999999999999999999999999988877 589999999999999999999999999987
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
.+....++..+|.++.++|+.++|+.+|++|+.+ +|......+..|.++..++++++|+..+++..
T Consensus 519 ------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 519 ------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred ------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 2335677888999999999999999999999999 88888899999999999999999999999998
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++ -|+...+++.+|.+|.+.|+.+.|+ ..|--|++++|.
T Consensus 585 ~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk 623 (638)
T KOG1126|consen 585 EL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK 623 (638)
T ss_pred Hh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence 87 5899999999999999999999999 999999999998
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-21 Score=193.90 Aligned_cols=412 Identities=20% Similarity=0.234 Sum_probs=287.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcccc
Q 004811 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (729)
.+...|+..+..|+ |+.|+.+|..|+.+- |.....|.+...+|..+|+|++|+.--.+.+++. +.
T Consensus 4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~ 68 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD 68 (539)
T ss_pred HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence 45678999999998 999999999999873 2346678899999999999999999999999986 33
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC-----------------
Q 004811 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ----------------- 365 (729)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 365 (729)
....|..+|..+..+|+|++|+..|.+.|+. +|.....+..|+.++.....
T Consensus 69 ----w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 69 ----WAKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred ----hhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 3346999999999999999999999999999 78888888888888722210
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------HhC
Q 004811 366 ----FSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTM--------------IAN 425 (729)
Q Consensus 366 ----~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------~~~ 425 (729)
+-.....|...++..+.+...-.. ........+|.+. |.... ..+....... ...
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~---~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK---GVDEL--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh---cCccc--cccccccccCCCCCCcccccCCCCCcc
Confidence 111122233333333222110000 0000001111110 00000 0000000000 000
Q ss_pred CCC------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 426 DQD------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 426 ~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
.+. ...+.-...+|...+...++..|+++|..++++ + .....+.+.+.+|+..|.+.+.+..+..
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 000 113445678999999999999999999999999 4 5667788999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
+++..... ..+...++.++..+|..|..+++++.|+.+|++++..... ..+.......++++.
T Consensus 283 a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 283 AVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK 345 (539)
T ss_pred HHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence 88874332 1112235566667888999999999999999998876543 233333444444444
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
..+...-+ . +..+.-...-|..++..|+|..|+.+|.+|+.. +|+....|.+.|.||..+|.+.
T Consensus 346 ~~e~~a~~-------~-pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 346 EAERKAYI-------N-PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHhh-------C-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence 44433222 1 112444455588888888888888888888887 7888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.|+...+.++++ +|.+..+|.+-|.++..+.+|++|. +.|+++++.+|+
T Consensus 410 ~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~ 458 (539)
T KOG0548|consen 410 EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence 888888888876 7888888888888888888888888 888888888887
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=194.09 Aligned_cols=409 Identities=16% Similarity=0.168 Sum_probs=311.7
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
...|+....-..+|+.+++... |.+|+.+|.-|+...+.+. ......++.++|..+.+.|+|+.|+..|+.+++.
T Consensus 231 kmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~ 305 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE 305 (840)
T ss_pred cccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh
Confidence 4457777777888999998875 9999999999998765442 1334677888999999999999999999888876
Q ss_pred chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh------CCCCc---------------------
Q 004811 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL------GETDP--------------------- 347 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~--------------------- 347 (729)
. ..+.+-++|..|++..|+-++-.+.|.+.+.+-..+- ..++|
T Consensus 306 ~----------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 306 A----------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred C----------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 4 1233456677777777777777777776654411000 00011
Q ss_pred ---------------------h--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811 348 ---------------------R--------------------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 348 ---------------------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
+ ....-.+.+..|.+.|+++.|++.++-.-....
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn----- 450 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN----- 450 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc-----
Confidence 0 001112335567778888888877643322211
Q ss_pred CCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 387 ASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (729)
.....+-.+|..+++.+| ++..|..+...++.+ +...+.++.+.|.+.+..|++++|.+.|++++.-
T Consensus 451 --k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--- 519 (840)
T KOG2003|consen 451 --KTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--- 519 (840)
T ss_pred --hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---
Confidence 112234556666666644 788888888887643 3444567888999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
+.....+++++|..+..+|+.++|+.+|-+.-.+... .+.++..++.+|..+.+..+|++++.++.
T Consensus 520 -----dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 520 -----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred -----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7778899999999999999999999999998888544 47889999999999999999999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
.+.|.. ..++..||.+|-..|+-.+|..++-.....++ ....+...||..|....-+++|+.+|+
T Consensus 586 slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryfp--------~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 586 SLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFP--------CNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred ccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhcccccC--------cchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888766 46788999999999999999998877665432 234566778999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+|.-+ .|........++.|+.+.|+|.+|.+.|+..-.- .|...+++.-|.++.-.+|-
T Consensus 651 kaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence 99888 7888888889999999999999999999977654 48888888888888777664
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.2e-21 Score=201.56 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
....+.+|..+...|++++|+..|+++++..+.. ..++..+|.++...|++++|+..+++++.. ......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~ 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTRE 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHH
Confidence 3455667888899999999999999999986543 356899999999999999999999987642 011112
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
....++..+|.+|...|++++|+.+|+++++. .+....++..++.++...|++++|+..+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence 33467899999999999999999999999876 5667788999999999999999999999998876322
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
.........+..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 244 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD- 244 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 1122345567789999999999999999999999876543 4577889999999999999999999998752
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
+.....++..++.+|...|++++|+.++++++.. +|+.. .+..++.++...|++++|+.++++++
T Consensus 245 ------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 245 ------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred ------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2223567788999999999999999999999987 56554 44889999999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHHHH----hhccc
Q 004811 670 GIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLL----DANSR 717 (729)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al----~~~p~ 717 (729)
+. +|+.......++..+.. .|+..+++ ..+++.+ ..+|+
T Consensus 310 ~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 310 RR--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLVGEQLKRKPR 354 (389)
T ss_pred Hh--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHHHHHHhCCCC
Confidence 76 57766544444443322 45788887 7666655 45555
No 27
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=4.8e-22 Score=190.14 Aligned_cols=330 Identities=15% Similarity=0.143 Sum_probs=278.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.-|.-+++.|++...+.+|+.|++.- .++......+|..||.+|+.+++|++|+++...-+.+.+.+. . ....
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-d-klGE 94 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-D-KLGE 94 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-c-hhcc
Confidence 34778899999999999999999874 555555566799999999999999999999988877765542 1 2334
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC--------------------HH
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HE 409 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------------~~ 409 (729)
+.+.-+||.++...|.|++|+.++.+-+.+.+..++. ...+.+++++|.+|...|+ ++
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 5677899999999999999999999999999988754 6678899999999998875 56
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811 410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489 (729)
Q Consensus 410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 489 (729)
.|.++|..-+.+....++......++-+||..|+-+|+|+.|+.+.+.-+.+.++.+ +......++.++|.++...|+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcc
Confidence 788888888888888888888899999999999999999999999999999988876 345567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004811 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (729)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (729)
++.|+++|+..+.+..++. +....+...+.||..|....++++|+.|+.+-+.+.... ++......+++.||..|.
T Consensus 251 fe~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFN 326 (639)
T ss_pred cHhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH
Confidence 9999999999999887752 234457788899999999999999999999999998876 666666788999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004811 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (729)
..|..++|+.+.++.+++..++.+.... ..+..++.......|..
T Consensus 327 alg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQE 371 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCC
Confidence 9999999999999999999888776533 23445566666666643
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-20 Score=181.51 Aligned_cols=375 Identities=13% Similarity=0.082 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...++..|.++...|....|+..|..++... +..+.+|..|+.+.... ........- ..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~~-------e~~~~l~~~-----l~ 222 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---------PWFWSAWLELSELITDI-------EILSILVVG-----LP 222 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---------CcchHHHHHHHHhhchH-------HHHHHHHhc-----Cc
Confidence 4456667777777777777777777776543 12233455555443221 111111110 00
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 423 (729)
.......-+.++.++....+.++++.-++....+ .+.. ...-...|.+.....++++|+..|+...+
T Consensus 223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~k--- 290 (559)
T KOG1155|consen 223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRK--- 290 (559)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh---
Confidence 0123334455666777777777777777666655 2222 23456678888899999999999987653
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
++|-...-+-....+++-..+-.+-.-..+.+..+ +...+.+...+|+.|...++.++|+.+|++|+++
T Consensus 291 ---nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 291 ---NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred ---cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 13322222223334444444333322333444444 4555667788899999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
+|....+|..+|.-|..+.+...|+..|++|+++.|.. ..+|+.||.+|.-++-+.=|+-+|++
T Consensus 360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 66678899999999999999999999999999998877 48999999999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
|+.+. +.....|..||.||.+.++.++|+.+|.+|+.. ......++..||.+|.++++.++|..
T Consensus 424 A~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 424 ALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99862 334689999999999999999999999999987 34455689999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|++.++.. ..-|...|....+...||..+.+.+++++|. .+...++.-++.
T Consensus 488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCch
Confidence 999999876 4556778888999999999999999999998 888777766544
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-20 Score=186.43 Aligned_cols=430 Identities=14% Similarity=0.116 Sum_probs=312.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc------
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------ 294 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 294 (729)
+.-.+.+|++++..++ |..|......- .+ . .....+.+..+.++....+|++|..++.+.-..
T Consensus 49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~l------e---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KL------E---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hh------h---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence 3455678888988887 65555443322 11 1 123567888899999999999999998843110
Q ss_pred chhh---------ccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-
Q 004811 295 PVIE---------EGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA- 363 (729)
Q Consensus 295 ~~~~---------~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 363 (729)
.... .+... .......++..|.+|..+.++++|...|.+|+.. ++...++...+-..+...
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~ 189 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTA 189 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcch
Confidence 0000 00000 1122345777899999999999999999999877 455444444333222211
Q ss_pred ----------------cCHHHHHHHHHHHHH-HHHhcCC----C-----CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811 364 ----------------LQFSEAQKFCQMALD-IHKDNGS----P-----ASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 364 ----------------g~~~~A~~~~~~al~-~~~~~~~----~-----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
+...+-++.+-++.. ....... + ........+...+..++..++|.+..+....
T Consensus 190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ 269 (611)
T KOG1173|consen 190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEE 269 (611)
T ss_pred hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHH
Confidence 111111111111110 0000000 0 0011134566678888999999999999887
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
.+.. .+-++ ...-..+| ++...|+..+-...-.+.++. .|..+..|+.+|..|...|++.+|.++|
T Consensus 270 lle~---dpfh~--~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~--------yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 270 LLEK---DPFHL--PCLPLHIA-CLYELGKSNKLFLLSHKLVDL--------YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HHhh---CCCCc--chHHHHHH-HHHHhcccchHHHHHHHHHHh--------CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 7653 22222 22334556 778888876655555555555 7999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
-++..+ ++....+|...|..+...|..++|+..|..|-++.+... .-...+|.-|...+++..|
T Consensus 336 SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-------lP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 336 SKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-------LPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-------chHHHHHHHHHHhccHHHH
Confidence 999988 566788999999999999999999999999999987652 2235689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
..+|.+|+.+.+ ..+.++..+|.+.+..+.|.+|..+|+.++...+..... .+.....+.+||.+|.+++.
T Consensus 400 e~Ff~~A~ai~P--------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 400 EKFFKQALAIAP--------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHHHHHHHhcCC--------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhh
Confidence 999999999843 245789999999999999999999999999776665443 34456688999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++|+.+|++++.+ .|..+.++..+|.+|..+|+++.|+ .+|.++|.++|+
T Consensus 471 ~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~ 521 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence 99999999999987 6888999999999999999999999 999999999997
No 30
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-21 Score=187.33 Aligned_cols=330 Identities=17% Similarity=0.186 Sum_probs=277.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004811 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
|.-+++.|++...+.+|+.|++...... .....+|..||.+|+.+++|++|+++...-+.+.+..++....+...-
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 5567889999999999999998765443 334567999999999999999999998888888888888888888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 004811 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK--------------------LRESKSY 496 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~ 496 (729)
+||.++-.+|.|++|+.++.+-+.+.++.+ +......+++++|.+|...|+ ++.|.++
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 999999999999999999999999998886 356678899999999998764 3456677
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Q 004811 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576 (729)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 576 (729)
|..-+++.++. .+......++-+||..|+.+|+|+.|+...+.-+.+.... |+....-.++.++|.++.-.|+++.
T Consensus 178 y~eNL~l~~~l---gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 178 YMENLELSEKL---GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHh---hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHh
Confidence 77777776663 2344456788999999999999999999999999998876 7777777889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
|+++|+..+.+..++++.. ..+...+.||..|....++++|+.|+++-+.+.+.+.. ......+++.||..|...|
T Consensus 254 A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhh
Confidence 9999999999999988764 45778889999999999999999999999999888755 4566779999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (729)
Q Consensus 657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~ 702 (729)
..++|+.+.++.+++..++..+. ....+..+|..+....|..+-
T Consensus 330 ~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 330 EHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence 99999999999999887764322 245566777777777776554
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.8e-20 Score=198.95 Aligned_cols=308 Identities=14% Similarity=0.107 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004811 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
..+.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..+++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3667789999999999999999999998 68888999999999999999999999999888632 11112
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
....++..+|.+|...|++++|+.+|.+++.. .+....++..++.++...|++++|+..+++++..... ..
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence 23467899999999999999999999988642 4455678889999999999999999999998875211 01
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.......+..+|.++...|++++|+.+|+++++.. +....++..+|.++...|++++|+.++++++...+.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 11234567789999999999999999999999872 234567889999999999999999999999986443
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ...++..++.+|...|++++|+..+++++... + + . ..+..++.++...|++++|+.+|+++++.
T Consensus 247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~---~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY----P-G---A-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-C---c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 23567789999999999999999999988762 1 1 1 23478899999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004811 630 LEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVG 670 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 670 (729)
.|+.......++..+.. .|+..+|+..+++.++
T Consensus 312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 78776544444443322 5689999999998885
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-19 Score=177.03 Aligned_cols=374 Identities=18% Similarity=0.136 Sum_probs=285.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
.+.-.++..|.++...|. ..+|+..+..++..+ |....+|..|+.+.-. ++.......-.
T Consensus 162 ~D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~-------~e~~~~l~~~l--- 221 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRY---------PWFWSAWLELSELITD-------IEILSILVVGL--- 221 (559)
T ss_pred chhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcC---------CcchHHHHHHHHhhch-------HHHHHHHHhcC---
Confidence 346677888998888885 899999999888654 5557777777666422 22222211110
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (729)
+.+ ..+..-+.++.++....+.++++.-++...... -|.....-...|.+...+.++++|+..|+..++
T Consensus 222 --~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 222 --PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred --ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 110 122334567888888888888888877766651 355566667788899999999999999999887
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
..|-..+. +-....+++-..+-. .+.++.+ ..... +.....+.+.+|..|...++.++|+.+|++|
T Consensus 291 nDPYRl~d--------mdlySN~LYv~~~~s-kLs~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA 356 (559)
T KOG1155|consen 291 NDPYRLDD--------MDLYSNVLYVKNDKS-KLSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRA 356 (559)
T ss_pred cCCCcchh--------HHHHhHHHHHHhhhH-HHHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence 65433322 233334443333322 2222211 11111 2222345677899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHH
Q 004811 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (729)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (729)
+++ +|....+|..+|.-|..+.+...|+..|++|+++ .|....+|+.||+.|..++-..=|+-
T Consensus 357 LkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 357 LKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred Hhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHH
Confidence 999 8999999999999999999999999999999999 55567899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (729)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (729)
+|++|+...|.. ..+|..||.+|.+.++.++|+++|.+++..- .....++..||.+|.++++..+
T Consensus 420 YfqkA~~~kPnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 420 YFQKALELKPND-------SRLWVALGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHhcCCCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHH
Confidence 999999987766 5789999999999999999999999999862 1246789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
|..+|++.++.... .+...+....+...||..+.+.+++++|..+..+++.
T Consensus 485 Aa~~yek~v~~~~~-eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVSEL-EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999997633 3334677888888899999999999999999888874
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.7e-21 Score=197.43 Aligned_cols=300 Identities=17% Similarity=0.174 Sum_probs=247.5
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811 310 GHMQLGDTYA--MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 310 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
.+..+|..|. .+-+..+|+..|.+.-.. .+...+++..+|..|+.+++|++|..+|+.+-++.|-..+.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~- 389 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG- 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-
Confidence 3555555554 344567888888883333 57777999999999999999999999999998877655432
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
.-....+++.+.+ +-++.++.+-+ ...++.....|+.+|.||..+++++.|+++|++|+++
T Consensus 390 -------meiyST~LWHLq~-~v~Ls~Laq~L-----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------ 450 (638)
T KOG1126|consen 390 -------MEIYSTTLWHLQD-EVALSYLAQDL-----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------ 450 (638)
T ss_pred -------hhHHHHHHHHHHh-hHHHHHHHHHH-----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------
Confidence 2222333333322 22333333222 2235556689999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
+|..+.+|..+|.=+....+++.|..+|+.|+.+ .+....+|+.||.+|.++++++.|.-+|++|+++.
T Consensus 451 --dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 451 --DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred --CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence 8999999999999999999999999999999998 56668899999999999999999999999999998
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
|.. ..+...+|.++.+.|+.++|+.+|++|+.+- +......+..|.++...+++++|+..+++..
T Consensus 520 P~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 520 PSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred ccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 776 4667889999999999999999999999862 2234677889999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
++ -|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus 585 ~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 585 EL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred Hh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 98 8999999999999999999999999999999876
No 34
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=1.4e-19 Score=205.43 Aligned_cols=432 Identities=11% Similarity=0.035 Sum_probs=262.9
Q ss_pred cccccccccccCcccccCCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 004811 196 PMKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273 (729)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~ 273 (729)
.+...+.+..+.+.+...... .+-....+..+...+...++ ++.|...+...++.- -. |+ ...+..+..
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~--~~-~~~~n~Li~ 166 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FE--PD-QYMMNRVLL 166 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CC--cc-hHHHHHHHH
Confidence 344555555555444333221 11234456666667777775 777777776665431 12 22 445777788
Q ss_pred HHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------------
Q 004811 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV------------ 341 (729)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------ 341 (729)
.|.+.|++++|..+|++..+. ...+|..+...|...|++++|+..|++.++.....
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 899999999999999887532 12247788888889999999999998876431000
Q ss_pred ----------------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 004811 342 ----------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405 (729)
Q Consensus 342 ----------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~ 405 (729)
....-.....++..|...|.+.|++++|...|++.... ...+|+.+...|...
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------~~vt~n~li~~y~~~ 303 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----------TTVAWNSMLAGYALH 303 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHhC
Confidence 00000011123445566667777777777766654210 124566777777777
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
|++++|+..|.+... .+..|+. .++..+...+...|++++|.+.+..+++. ..+....++..|...|.
T Consensus 304 g~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 304 GYSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYS 371 (697)
T ss_pred CCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHH
Confidence 777777777765532 2222322 35666666777777777777776666554 12334556667777777
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004811 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (729)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (729)
+.|++++|...|++..+. ...+|+.+...|...|+.++|+++|++.... |..+. ..++..+.
T Consensus 372 k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~ll 433 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPN-HVTFLAVL 433 (697)
T ss_pred HCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC-HHHHHHHH
Confidence 777777777777654221 1345677777777777777777777776543 22222 23455666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
..+...|..++|..+|+...+. . +..+ ....|..+..+|.+.|++++|.+++++.- ..|+. .+|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~---~-g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~~---------~~p~~-~~~ 497 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSEN---H-RIKP--RAMHYACMIELLGREGLLDEAYAMIRRAP---------FKPTV-NMW 497 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHh---c-CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHCC---------CCCCH-HHH
Confidence 6777777777777777665542 1 1111 23456667777777777777777665431 13332 357
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
..|...+...|+++.|...+++.+++ .|.....|..|..+|...|++++|. +.++...+.
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~ 557 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRK 557 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHc
Confidence 77777777777777777777766543 4555566777778888888888887 777766544
No 35
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-18 Score=180.28 Aligned_cols=434 Identities=14% Similarity=0.054 Sum_probs=334.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+.++-.+...+...|+ |..+.++|++++...- .....|+.++.+|...|.-..|+.+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~~---------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-- 388 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFSF---------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-- 388 (799)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhh---------hhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence 455666667777777887 8999999999887642 2355688899999999999999999999987742
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-----------CHH
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS 367 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~ 367 (729)
.+.++. ..++.-..|+...+.+++++.+..+++..+... .+...+.++..+|.+|..+- ...
T Consensus 389 -~ps~~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 389 -QPSDIS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred -CCCcch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 122222 224445566778899999999999999976332 23445677888888886542 356
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004811 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (729)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (729)
++++.+++|+++.+.+. .+.+.++.-|..+++.+.|+++.++++.+. ....+.+|..++.++...++
T Consensus 462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhh
Confidence 78888888888877664 458899999999999999999999998652 33456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004811 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (729)
+.+|+.....+++- .+.+.........+-...++.++|+..+...+.+++...+-...-+........+.+.
T Consensus 529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 99999999999987 4554555555566666789999999999999999875321111111122222333344
Q ss_pred HhcchHHHHHHHHHHHHHHHHhC----------------CCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
....+..+|+..+.++..+.... ++.. .....+|...+..+...++.++|..++.++-.+.
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 44556666777666665554311 1111 1234567788999999999999999999988874
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 004811 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE--ILE 666 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~ 666 (729)
+..+..|+..|.++...|++.+|.+.|..|+.+ +|+...+...+|.++...|+..-|.. ++.
T Consensus 681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 346788999999999999999999999999999 89999999999999999999888888 999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++++ +|.+..+|+.||.++..+|+.++|. .+|..++++.+.
T Consensus 745 dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S 786 (799)
T KOG4162|consen 745 DALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES 786 (799)
T ss_pred HHHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence 99987 7999999999999999999999999 999999999887
No 36
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=1.4e-17 Score=190.72 Aligned_cols=418 Identities=11% Similarity=0.065 Sum_probs=288.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
++.....++..-..+.+.|+ +.+|++.|++.... +.. +.....+..+...+...|..++|..+|.....
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 33344555566666778887 88888888765431 111 11233344455667788888888888876543
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
+ ...+|..+-..|...|++++|..+|.++.+.. -.....+|..+...|.+.|++++|..+|+++
T Consensus 435 ----p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 435 ----P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred ----C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 1 12346777778888888888888888776541 1223466778888888888888888888887
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
.+.... + + ..+|..+...|.+.|++++|+..|..... .+..|+ ..+|..+...|.+.|++++|.+.|.
T Consensus 499 ~~~Gv~---P-d---vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 499 VNAGVE---A-N---VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHcCCC---C-C---HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653211 1 1 35678888888888888888888876543 233333 3567888888888888888888888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH
Q 004811 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (729)
+....... -.|+ ..+|..+...|.+.|++++|.++|+++.+. +. .....+|..+...|.+.|++++|
T Consensus 567 eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~------gi--~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 567 EMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY------NI--KGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CC--CCChHHHHHHHHHHHhcCCHHHH
Confidence 77653100 0233 467778888888888888888888887665 11 11245677888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004811 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (729)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (729)
+.+|.+.... +..+. ..+|..+...|.+.|++++|..++.++.+. +-. ....+|..+...|.+.|++
T Consensus 634 l~lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~---pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 634 LSIYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK---LGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHHHhCCCH
Confidence 8888877653 22222 346777888888888888888888877642 111 1245788888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (729)
++|.++|++.... +. .|+ ..+|..|...|.+.|++++|+++|++.... .-.|+ ..++..|...+..
T Consensus 701 eeA~~lf~eM~~~-----g~-~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k 766 (1060)
T PLN03218 701 KKALELYEDIKSI-----KL-RPT-VSTMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHH
Confidence 8888888876543 11 344 347888888888888888888888877543 22344 3456667778888
Q ss_pred hCCHhHHHHHHHHHHHhh
Q 004811 697 AGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 697 ~g~~~~A~~~~l~~al~~ 714 (729)
.|++++|. ..+..+++.
T Consensus 767 ~G~le~A~-~l~~~M~k~ 783 (1060)
T PLN03218 767 KDDADVGL-DLLSQAKED 783 (1060)
T ss_pred CCCHHHHH-HHHHHHHHc
Confidence 88888888 888887664
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=5.3e-19 Score=186.19 Aligned_cols=393 Identities=16% Similarity=0.145 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...+...|...+..|++++|..++.++++.. +.. ..+|+.||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRN----PIAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccc----hhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 3345567788888899999999999999886 333 335999999999999999999999888877
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 424 (729)
+|.....|..++....++|++.+|.-+|.+|++..|.+. ......+.+|.+.|++..|...|.++++....
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 677779999999999999999999999999999988764 45778899999999999999999988775431
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 004811 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR-- 502 (729)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 502 (729)
. +....-......+..+...++-+.|++.++.++.... .......+..++.++....+++.|.........
T Consensus 274 ~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 274 V-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred h-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 1 1112222334457778888888999999999888422 233344566789999999999999888776655
Q ss_pred --------------------HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004811 503 --------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (729)
Q Consensus 503 --------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (729)
++.- +......+..+...++.+....++..+++..+..--.. ........+.
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~ 418 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYL 418 (895)
T ss_pred cCCChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHH
Confidence 1111 01111222223556666666666666666555322111 1234467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (729)
.++.+|...|++.+|+.+|..+... .....+.+|..+|.||..+|.+++|+++|++++.. .|+..
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~ 483 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNL 483 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCch
Confidence 9999999999999999999887653 12234679999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIRE-EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
++...|+.+|.++|+.++|.+.+++...--. ..-+...+...........+|...|+.++-+ .....++.
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~ 554 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVD 554 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 9999999999999999999998887441000 0000112334566788899999999999876 55544443
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.6e-19 Score=179.09 Aligned_cols=418 Identities=17% Similarity=0.166 Sum_probs=296.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHHh-----c-CCC----CCHhHHHHHHHHHHHHHHcCChHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAK------SFEIG-----A-NGK----PSLELVMCLHVIAAIYCSLGQYNE 283 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~------~~~~~-----~-~~~----~~~~~~~~~~~la~~~~~~g~~~~ 283 (729)
.....+..+.++....+ |++|+....++-. .+++. . +.. +..-....++..|.+|..+.++++
T Consensus 81 d~~cryL~~~~l~~lk~-~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 81 DIACRYLAAKCLVKLKE-WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence 34455666777777766 7777766653210 00010 0 000 011123345667999999999999
Q ss_pred HHHHHHHhcccchhhccccchHHHHHHHHHHH-HHHHHcCCHHHH------HHHHHHHHHHHH-HHh-------CC----
Q 004811 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLG-DTYAMLGQLENS------LMCYTTGLEVQK-QVL-------GE---- 344 (729)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A------~~~~~~al~~~~-~~~-------~~---- 344 (729)
|...|.+|+.........-.. .+..+...+ ..+......+-| .+..+...++.. +.. .+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~--lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEK--LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHH--HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 999999999875322211110 001111111 111111111111 111111111100 000 00
Q ss_pred -CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811 345 -TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (729)
Q Consensus 345 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 423 (729)
.-..........+..++..++|.+..+.+...++..|-.... .-..+| ++...|+..+-...-.+. .
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~-------~~~~ia-~l~el~~~n~Lf~lsh~L---V- 305 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC-------LPLHIA-CLYELGKSNKLFLLSHKL---V- 305 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch-------HHHHHH-HHHHhcccchHHHHHHHH---H-
Confidence 012345667788899999999999999999999988766532 234455 666777655443333322 2
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
...|..+..|+.+|..|...|++.+|..+|-++..+ ++..+.+|...|..+...|..++|+..|..|-++
T Consensus 306 --~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 306 --DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred --HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 346777788999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
+... .. -...+|.-|...+++.-|..+|.+|+.+.|..+ .++..+|.+.+..+.|.+|..+|+.
T Consensus 376 ~~G~----hl-----P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 376 MPGC----HL-----PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred ccCC----cc-----hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHH
Confidence 6543 22 355689999999999999999999999998773 6778899999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
++...+....... .....+.+||.+|.+++.+++|+.+|++++.+ .|....++..+|.+|..+|+++.|++
T Consensus 440 ~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 440 ALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9988777766654 45678999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (729)
+|.+++.+ .|+...+-..|+....
T Consensus 511 ~fhKaL~l--------~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 511 HFHKALAL--------KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHhc--------CCccHHHHHHHHHHHH
Confidence 99999987 4666555555554433
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2.2e-18 Score=191.84 Aligned_cols=418 Identities=11% Similarity=-0.043 Sum_probs=306.5
Q ss_pred CcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004811 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (729)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (729)
.+-..-.+|++..|++.+.++...+|.....+..++..+...|+ +++|+.++++++. +.+.....+..+|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~---------p~n~~~~~llalA 109 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS---------SMNISSRGLASAA 109 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc---------CCCCCHHHHHHHH
Confidence 34455678888888889999999999986555588888888887 8999999999882 2222344566668
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (729)
.+|...|+|++|+++|+++++.. ++.+. ++..++.++...++.++|+..+++++.. +|.....
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~~ 172 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQNY 172 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHHH
Confidence 89999999999999999999886 44433 3667899999999999999999999887 5664333
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHH----------------------
Q 004811 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA---------------------- 410 (729)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~---------------------- 410 (729)
..++.++...++..+|+..++++++..|.... .+..+..+....|-...
T Consensus 173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 55566666677887799999999998876542 12222233322222222
Q ss_pred --------------------------HHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 411 --------------------------ALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 411 --------------------------A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
|+..++..+......+ ..+....+....-.++...|++.+++..|+.....
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-- 321 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-- 321 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc--
Confidence 2222222221111111 12233445556666777889999999888866543
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
..+.-..+....|..|...+++++|+.+|..++.-..... ..+........|...|...+++++|..++++.
T Consensus 322 -----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 322 -----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred -----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1233345778889999999999999999999976532110 01112333467788899999999999999999
Q ss_pred HHHHHh-C-------CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004811 544 LKIYND-A-------PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (729)
Q Consensus 544 l~~~~~-~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (729)
....|- . ....+........++.++...|++.+|++.+++.+... +....++..+|.++..+|.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL 465 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence 875441 0 11234556778889999999999999999999987752 3356788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+.+|...++.++.+ +|+...+...+|.++..+|++.+|......+++..
T Consensus 466 p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 466 PRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999888 89999999999999999999999999999998874
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.1e-18 Score=183.97 Aligned_cols=353 Identities=14% Similarity=0.102 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
+..++..|+..+..|++++|+..+.+++.. +|....+|+.||.+|.++|+.+++...+-.|-.+.|+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence 445778888899999999999999999998 799999999999999999999999999988887776664
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
..|..++.....+|++.+|.-+|.+|++. .|......+..+.+|.++|+...|...|.+++.+....
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 35999999999999999999999999864 45556778889999999999999999999999983100
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--
Q 004811 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK-- 545 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 545 (729)
+...........+..+...++-+.|++.++.++...... .....++.++.++....+++.|.........
T Consensus 275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 011223334455778888888899999999999843221 1233466788899999999999888776555
Q ss_pred --------------------HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 004811 546 --------------------IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (729)
Q Consensus 546 --------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (729)
+++-..+....+..+...++.+..+.++..+++..+..--.. .+......+..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d 419 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD 419 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence 111111111222234556677777777777777666432221 12345678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004811 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~ 685 (729)
++.++...|++.+|+.+|..+... + -.....+|+.+|.||..+|.+++|+++|++++.+ .|++.+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~------~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR------E-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC------c-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 999999999999999999998764 1 1233568999999999999999999999999977 699999
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 686 EKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
+...|+.++..+|+.++|. +.++....-+
T Consensus 485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D 513 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKAL-ETLEQIINPD 513 (895)
T ss_pred hhhhHHHHHHhcCCHHHHH-HHHhcccCCC
Confidence 9999999999999999999 9998877444
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=1.9e-17 Score=189.59 Aligned_cols=375 Identities=15% Similarity=0.146 Sum_probs=288.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc
Q 004811 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH 303 (729)
Q Consensus 224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (729)
+..+...+...|. ..+|+.++.... .++ ...|..+-..|...|++++|..+|.++.+.. ..
T Consensus 409 ~~~li~~~~~~g~-~~eAl~lf~~M~---------~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~- 469 (1060)
T PLN03218 409 HAKFFKACKKQRA-VKEAFRFAKLIR---------NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LK- 469 (1060)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHcC---------CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CC-
Confidence 3344455666676 777776654332 132 4567788889999999999999999987652 11
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
....+|..+...|.+.|++++|..+|+++.+.. -.| ...+|..+...|.+.|++++|+.+|.+.....-.
T Consensus 470 --pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~- 539 (1060)
T PLN03218 470 --ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK- 539 (1060)
T ss_pred --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-
Confidence 123358889999999999999999999987641 123 4578899999999999999999999987654211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
++ ..+|..+...|.+.|++++|.+.|.+.... ..+..|+ ..+|..+...|.+.|++++|.++|+++.+.
T Consensus 540 --PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-- 608 (1060)
T PLN03218 540 --PD----RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-- 608 (1060)
T ss_pred --CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence 11 357899999999999999999999877532 1122333 357788889999999999999999988765
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
+.+....+|..+...|.+.|++++|+.+|.+.... +..+ + ..+|..+...|...|++++|..++.++
T Consensus 609 -----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~P-D-~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 609 -----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKP-D-EVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred -----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-C-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 23445678999999999999999999999998765 2112 2 457888999999999999999999998
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (729)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 623 (729)
.+. +..+. ..+|..+...|.+.|++++|..+|++.... +. .+ ...+|+.+...|.+.|++++|+++|
T Consensus 676 ~k~-----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~P--dvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 676 RKQ-----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RP--TVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 754 22222 357889999999999999999999887542 11 12 2467999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
++.... +. .|+. .+|..+...+...|++++|..++.++++.
T Consensus 743 ~eM~~~-----Gi-~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 743 SEMKRL-----GL-CPNT-ITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHc-----CC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 997653 21 3554 37777889999999999999999998764
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=2.3e-18 Score=195.41 Aligned_cols=369 Identities=15% Similarity=0.068 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...+..+...|.+.|+ +++|...|++... ++ ..+|..+...|.+.|++++|+.+|+++++....
T Consensus 158 ~~~~n~Li~~y~k~g~-~~~A~~lf~~m~~---------~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--- 221 (697)
T PLN03081 158 QYMMNRVLLMHVKCGM-LIDARRLFDEMPE---------RN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSD--- 221 (697)
T ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHhcCCC---------CC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---
Confidence 5567778888999997 8877777765421 22 456888999999999999999999998754211
Q ss_pred ccch------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004811 301 QEHA------------------------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (729)
Q Consensus 301 ~~~~------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (729)
++.. .....++..|...|.+.|++++|...|++.. +...
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~ 290 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTT 290 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCCh
Confidence 1100 0011235667888999999999999987642 2355
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
.+|..+...|.+.|++++|+.+|++.....-. ++ ..++..+...+...|++++|.+.+..+++. +.. .
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~-~ 358 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---ID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFP-L 358 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CC----HHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCC-C
Confidence 78999999999999999999999988653211 11 246889999999999999999999877642 222 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
...++..+...|.+.|++++|...|++..+ + ...+|..+...|.+.|+.++|+.+|++.... +
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g 421 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------G 421 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence 345778899999999999999999987642 2 3468999999999999999999999998865 2
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
. .|+ ..++..+...+...|..++|..+|+...+.. +..+. ...|..+..+|.+.|++++|.+.++++
T Consensus 422 ~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~------ 488 (697)
T PLN03081 422 V-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKPR-AMHYACMIELLGREGLLDEAYAMIRRA------ 488 (697)
T ss_pred C-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC------
Confidence 2 122 4568888889999999999999999887643 22222 246788999999999999999887653
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
... + ...+|..+...+...|+++.|...+++.+.+ .|+....|..|+.+|...|++++|.+.++...+
T Consensus 489 -~~~-p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 489 -PFK-P--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred -CCC-C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 111 1 2457899999999999999999999998876 677777899999999999999999999997764
No 43
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.2e-17 Score=154.50 Aligned_cols=424 Identities=12% Similarity=0.037 Sum_probs=304.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-----------CCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGA-----------NGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
.....+..+....+.... |..|...|..++..-.... ...+.+.........+.||...++-+.|+..
T Consensus 41 ~~yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~ 119 (564)
T KOG1174|consen 41 VEYQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIET 119 (564)
T ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHH
Confidence 344455555555555543 6677777776665432110 1122244455567789999999999999998
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------------------------
Q 004811 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-------------------------- 341 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------- 341 (729)
+....... ..|. .-+.++..+..-++..++.-.|...+..+.-.
T Consensus 120 l~~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~ 189 (564)
T KOG1174|consen 120 LLQVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAAT 189 (564)
T ss_pred HhcCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhee
Confidence 87765442 1221 24455666665555545544444433221110
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004811 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
..+..|........+|.++....-+.-+..++-+-....+.+ ...+..+|.+++..|++.+|+..|+++..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 001111111122233433333333334444444434444333 345788999999999999999999988653
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (729)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (729)
+|......-..|.++...|+++.-.......+.+ ......-|+.-+..++...++..|+.+-++++
T Consensus 262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 6777777778889999999999887777777666 33455667777888899999999999999999
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
+. .+....++...|.++..+++.++|+-.|+.|..+.|-. ..+|..|-.+|+..|.+.+|....
T Consensus 328 ~~---------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 328 DS---------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred cc---------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHH
Confidence 98 44456789999999999999999999999999988655 478899999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811 582 KNAISKLRAIGERKSAFFGVALNQMG-LACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
..++..+.. .+.++..+| .++. .-.--++|..++++++.+ .|....+...+|.++...|+++
T Consensus 392 n~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 392 NWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccc
Confidence 988887643 345666665 4433 233468999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++.++++++..+ |+ ...+..||.++...+.+.+|. .+|..|+.+||+
T Consensus 456 D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 456 DIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK 503 (564)
T ss_pred hHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence 9999999999864 33 457889999999999999999 999999999998
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=2.6e-17 Score=154.45 Aligned_cols=333 Identities=15% Similarity=0.118 Sum_probs=243.8
Q ss_pred CCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (729)
Q Consensus 260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 339 (729)
.+|..+.-...+|..++..|++..|+..|..|++.. + ....+++..|.+|..+|+-.-|+..+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----P----NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----c----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 335556667889999999999999999999999886 2 23446899999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004811 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 419 (729)
.|+...+....|.++.++|++++|..-|..+++..+..... -.+...++.+ .
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~----------~------- 153 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALI----------Q------- 153 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhH----------H-------
Confidence 79999999999999999999999999999999887655421 0111111110 0
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
....+......+...|+...|+.+....+++ .|..+..+...+.+|...|+...|+..++.
T Consensus 154 -----------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 154 -----------EHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred -----------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0122333445566778888888888888888 788888888888888888888888888888
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH---HH--HHHHHHHHHHcCCH
Q 004811 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA---GI--EAQMGVMYYMLGNY 574 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~--~~~la~~~~~~g~~ 574 (729)
+-++. .+....++.++.+++..|+.+.++...++++++.|++..-.+..- .+ ...-+......++|
T Consensus 215 askLs---------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 215 ASKLS---------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHhcc---------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 87772 223567788888888888888888888888887665521111000 00 00112233445666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (729)
.+++...++.++.- +............+..|+..-|++.+|+....+++.+ +|+.+.++...|.+|..
T Consensus 286 t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 286 TECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhh
Confidence 66666666655531 1112222345566778888888899999988888888 88888899999999988
Q ss_pred cCChHHHHHHHHHHHHH
Q 004811 655 IGRLDDAIEILEFVVGI 671 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~ 671 (729)
...|+.|+.-|++|.++
T Consensus 354 dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 88899999999988876
No 45
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=1.7e-17 Score=193.05 Aligned_cols=150 Identities=9% Similarity=-0.023 Sum_probs=74.1
Q ss_pred cccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811 196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
.+.+.|+...|...+...... ....|..+...+.+.|+ +++|+++|.+....- ..|+ ...+..+...+
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g-----~~Pd---~~ty~~ll~a~ 298 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGE-CLEGLELFFTMRELS-----VDPD---LMTITSVISAC 298 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCC-HHHHHHHHHHHHHcC-----CCCC---hhHHHHHHHHH
Confidence 344555555555555554432 23467778888999997 999999988876421 1111 22233344444
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
...|+.+.|.+++..+++... . ....++..|...|.+.|++++|...|++... | ...+|..
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~---~-----~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~s~n~ 359 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGF---A-----VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAVSWTA 359 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCC---c-----cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CeeeHHH
Confidence 445555555555544443210 0 0122344444455555555555544443210 1 1223444
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 004811 356 LAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~a 376 (729)
+...|.+.|++++|+.+|++.
T Consensus 360 li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 444444455555555544443
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.4e-17 Score=163.65 Aligned_cols=415 Identities=17% Similarity=0.182 Sum_probs=280.6
Q ss_pred cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004811 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (729)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (729)
.+.++|..++..+.+....+|.+...+-++..++...|+ |++|+.-..+.+++. |+++..|..+|..++.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKGAALFG 82 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhHHHHHh
Confidence 445677778888888889999999999999999999998 999999888888763 6788999999999999
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHH
Q 004811 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCYTTGLE 336 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~ 336 (729)
+|+|++|+..|.+.|+.. +... ..+..|+.++...- ++-.....|...++
T Consensus 83 lg~~~eA~~ay~~GL~~d-----~~n~----~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-----PSNK----QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred cccHHHHHHHHHHHhhcC-----CchH----HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999986 2222 12455555551110 01111122333333
Q ss_pred HHHHHhCCCCchHHHHHH-------HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC------------C------CHHH
Q 004811 337 VQKQVLGETDPRVGETCR-------YLAEAHVQALQFSEAQKFCQMALDIHKDNGSP------------A------SLEE 391 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~------~~~~ 391 (729)
..++ .|.....+. .++.+.. .+.. ..+.......+....+ + ....
T Consensus 154 ~~~~-----~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 154 IIQK-----NPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK 223 (539)
T ss_pred Hhhc-----CcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence 3222 111111111 1111000 0000 0000000000000000 0 0113
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+.....+|.......++..|+++|.+++.+. .....+.+.+.+|+..|.+.+.+....++++....... +..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~k 295 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYK 295 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHH
Confidence 5567789999999999999999999998753 33456678899999999999999988888776433211 122
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
..+.++..+|..|...++++.|+.+|++++.-.+. ..+.......++++...+...-+.+..
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~- 357 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK- 357 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH-
Confidence 35566667888999999999999999998877433 223333444455554444333332222
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
+.-...-|..++..|+|..|+.+|.+|+.. .+..+..|.+.|.||..+|.+..|+...+.++++
T Consensus 358 ------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-- 421 (539)
T KOG0548|consen 358 ------AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-- 421 (539)
T ss_pred ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 334445688888899999999999888775 2335678888899999999999999988888888
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (729)
+|.....|..-|.++..+.+|++|++.|+++++. +|....+...+.+++..+
T Consensus 422 ------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 ------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence 8888888888899999899999999999888865 677777777777776653
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=8.8e-16 Score=181.27 Aligned_cols=420 Identities=15% Similarity=0.064 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...+...+..+...|+ +.+|+.++..+-. .......+...+..+...|++..+..++..+- ... .
T Consensus 341 ~~lh~raa~~~~~~g~-~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp-~~~---~ 405 (903)
T PRK04841 341 PELHRAAAEAWLAQGF-PSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNALP-WEV---L 405 (903)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCC-HHH---H
Confidence 3444555555666775 7777776554421 13345556667888888999988777775541 110 0
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
..++. .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++..
T Consensus 406 ~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 406 LENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred hcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111 2456788888999999999999988766432110001 123455666888999999999999999999985
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (729)
.+.. .....+.++..+|.++...|++++|...+.+++......+.......++..+|.++...|++++|..++++++
T Consensus 482 ~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 482 LPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred CCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3322 2233455678899999999999999999999998887776666667788999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004811 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (729)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (729)
.+.....+...+.....+..+|.++...|++++|...+.+++.+..... ......++..++.++...|++++|...
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~ 634 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARRY 634 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988765433444455677889999999999999999999999876531 223456778899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811 540 LQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (729)
Q Consensus 540 ~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (729)
+.++..+.... +... ............+...|+.+.|..++...... ...........+..++.++...|++++
T Consensus 635 l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 635 LNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 99999886654 2111 11111111234556688999988887664431 001111123345678999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
|..++++++........ ......++..+|.++...|+.++|...+.+++++..
T Consensus 710 A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 710 AEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999998665433 346677889999999999999999999999999864
No 48
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.79 E-value=7.7e-15 Score=173.25 Aligned_cols=423 Identities=15% Similarity=0.036 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
....+...+..+...|++.+|+.++..+-.. ..........+..+...|++..+..++..+-... .
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~ 405 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----L 405 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----H
Confidence 3455666777788899999998877665322 1233456667888888999888777665431110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
..+|. .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus 406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11233 34567778889999999999999987765432211 112234556678899999999999999999988642
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
.. ........++..+|.++...|++++|..++++++........ ......++..+|.++...|++++|..++++++.
T Consensus 483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 222234556788999999999999999999999998876542 233456778999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
+..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..++.++...|++++|...+.
T Consensus 560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 977642 11223334456778999999999999999999999987754 2 22345567789999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
++..+....... ..............+...|+.+.|..++....... .+. .......+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~-~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FAN-NHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Ccc-chhHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876543211 11111111112344556789999988876654310 010 1112223568999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+++++...+.. | .......++..+|.++...|+.++|. ..+.+++++...
T Consensus 712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~ 763 (903)
T PRK04841 712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence 9999999886543 2 23456778889999999999999999 999999998765
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=155.29 Aligned_cols=245 Identities=19% Similarity=0.188 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
+.-..+|.||+++|-+.+|...++.+++. ...+..+..|+.+|.+..+...|+..|.+.++.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------- 285 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------- 285 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---------
Confidence 34467999999999999999999999985 344678889999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.|..+..+..++.++..++++++|.++|+.+++..+.+ .++...+|.-|+..++.+-|+.+|.+.+++-
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG---- 354 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN-------VEAIACIAVGYFYDNNPEMALRYYRRILQMG---- 354 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-------ceeeeeeeeccccCCChHHHHHHHHHHHHhc----
Confidence 34456778899999999999999999999999887655 2444567888999999999999999999872
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
...+..+.++|.|++..++++-++..|++|+....+ .....++|++||.+....|++.-|..+|+-++.
T Consensus 355 ----~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-- 423 (478)
T KOG1129|consen 355 ----AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-- 423 (478)
T ss_pred ----CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhc--
Confidence 224578999999999999999999999999988543 345677999999999999999999999999984
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCccc
Q 004811 673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIE 724 (729)
Q Consensus 673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~ 724 (729)
.+++...++.+||.+-.+.|+.++|. ..|..+-...|+ ....+++
T Consensus 424 ------~d~~h~ealnNLavL~~r~G~i~~Ar-sll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 424 ------SDAQHGEALNNLAVLAARSGDILGAR-SLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred ------cCcchHHHHHhHHHHHhhcCchHHHH-HHHHHhhhhCcccccccccee
Confidence 58999999999999999999999999 999999999999 4444444
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=6.8e-15 Score=149.49 Aligned_cols=427 Identities=14% Similarity=0.033 Sum_probs=321.8
Q ss_pred cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004811 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (729)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (729)
.+...-|.....|+.+++.- .|+.|...+.+|-+.++.. +. +|..-+.+-...|+.+....+..++
T Consensus 401 rAveccp~s~dLwlAlarLe-----tYenAkkvLNkaRe~iptd------~~---IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 401 RAVECCPQSMDLWLALARLE-----TYENAKKVLNKAREIIPTD------RE---IWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHhccchHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCC------hh---HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445577777777766643 2777777777766654321 22 2333444455555555555555444
Q ss_pred cccchhh----------------------------------ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 292 IEIPVIE----------------------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 292 l~~~~~~----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
+.-.... .|.+. ......|..-+..+...+.++-|+..|..+++.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe-ed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE-EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc-chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 3321100 00111 012234777788888899999999999999998
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
.|..-..|...+.+-..-|..+.-..++++++...|+.. ..|...+..++..|+...|...+.+
T Consensus 546 --------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae--------~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 546 --------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE--------ILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred --------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch--------hHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 577777888888888888999999999999999887654 3477778888999999999999998
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
++.. .|..-.+|..--.+.....+++.|..+|.++... .....+|+.-+.+...+++.++|+.++
T Consensus 610 af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 610 AFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8753 3444566666677888899999999999998775 445688889999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
+++++.+ |.....|..+|+++..+++.+.|...|...++.+|.. ..+|..|+.+-.+.|..-.|
T Consensus 675 Ee~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 675 EEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHHHHHHhcchhhH
Confidence 9999994 4457789999999999999999999999998888766 36788899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------cCCC------------
Q 004811 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE--------CGPY------------ 637 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~------------ 637 (729)
...++++.-. .+.....|......-++.|+.+.|..+..+|++-+... .-..
T Consensus 739 R~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 739 RSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 9999988643 12245677777788888999999999999988764321 0000
Q ss_pred --ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 638 --HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 638 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
......++..+|.++....++++|.++|.+++.+ +|++.++|..+-..+...|.-++-. +.|.+.....
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~E 881 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETAE 881 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhccC
Confidence 1122346778899999999999999999999987 6888999999999999999999988 9999999888
Q ss_pred cc
Q 004811 716 SR 717 (729)
Q Consensus 716 p~ 717 (729)
|.
T Consensus 882 P~ 883 (913)
T KOG0495|consen 882 PT 883 (913)
T ss_pred CC
Confidence 86
No 51
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=3.1e-16 Score=182.52 Aligned_cols=426 Identities=14% Similarity=0.036 Sum_probs=278.4
Q ss_pred ccccccccccccCcccccCC--CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004811 195 TPMKKRKGKLHKGQDVSEAG--LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (729)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~--~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (729)
..+.+.++...+.+.+.+.. ...|+ ...+..+...+...|+ .+.|.+.+..+++.- -.++ ...+..+.
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g-----~~~d---~~~~n~Li 330 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELLGD-ERLGREMHGYVVKTG-----FAVD---VSVCNSLI 330 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC-hHHHHHHHHHHHHhC-----Cccc---hHHHHHHH
Confidence 33445555555554443321 23454 3445556666777886 899988888876541 1222 45678888
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (729)
..|.+.|++++|..+|++...-. ..+|..+...|.+.|++++|+.+|++..... -.|+. .+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d------------~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~-~t 391 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKD------------AVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE-IT 391 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCC------------eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc-ee
Confidence 89999999999999998865321 1247888888999999999999998875541 12332 34
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004811 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (729)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (729)
+..+-..+...|++++|.+++..+.+...... ..++..+...|.+.|++++|.+.|++... + ..
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------~-d~ 455 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCIDKALEVFHNIPE--------K-DV 455 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------C-Ce
Confidence 44455567777888888888877765432211 24567777778888888888877765421 1 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------------------------------hhHHHHHHHHH
Q 004811 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------------------------------PAVASVFVRLA 481 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~la 481 (729)
.+|..+...|...|++++|+..|++.+.. ..++. .....++..|.
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 35666777777788888888877776531 11110 11112233445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 004811 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561 (729)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 561 (729)
..|.+.|++++|...|+.. .. ...+|+.+...|...|+.++|+.+|++..+. +..+. ..++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~ 592 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPD-EVTF 592 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-cccH
Confidence 6677777777777766653 11 1456778888888888888888888876653 11111 1234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
..+-..+.+.|++++|..+|+...+.. +..+ ....|..+..++.+.|++++|.+++++.- + .|+
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~--------~pd- 656 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKY----SITP--NLKHYACVVDLLGRAGKLTEAYNFINKMP-I--------TPD- 656 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHh----CCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C--------CCC-
Confidence 555567788888888888888766321 1111 23567788888888888888888877641 1 344
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
..+|..|-..+...|+.+.|....++++++ .|+....+..|+.+|...|++++|. +..+...+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~-~vr~~M~~ 719 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVA-RVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHH-HHHHHHHH
Confidence 336666667777788888888777777765 5777778888899999999999988 77766644
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=2.2e-15 Score=141.71 Aligned_cols=339 Identities=14% Similarity=0.090 Sum_probs=240.3
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
..+|....-.+.+|..++..|+ +..|+..|..|++. +|....+++..|.+|..+|+-.-|+..+.+++++
T Consensus 32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~---------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEG---------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcC---------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 4567788889999999999998 99999999999874 3667888999999999999999999999999998
Q ss_pred chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHHHHhcCHHHHHH
Q 004811 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR---VGETCRYLAEAHVQALQFSEAQK 371 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~ 371 (729)
. + ....+....|.++.++|.+++|...|.++++. +|. ..++...++.+-.
T Consensus 102 K-----p----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--------~~s~~~~~eaqskl~~~~e---------- 154 (504)
T KOG0624|consen 102 K-----P----DFMAARIQRGVVLLKQGELEQAEADFDQVLQH--------EPSNGLVLEAQSKLALIQE---------- 154 (504)
T ss_pred C-----c----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--------CCCcchhHHHHHHHHhHHH----------
Confidence 6 2 23446889999999999999999999999887 342 2223222222110
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (729)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (729)
. ..+......+...|++..|+++....+.+ .|..+..+...+.||...|+...|
T Consensus 155 ~--------------------~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 155 H--------------------WVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred H--------------------HHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHH
Confidence 0 11223333444556777777766665542 455556666677777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--------
Q 004811 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------- 523 (729)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------- 523 (729)
+.-++.+-++ ..+....++.++.+++..|+.+.++...++++++ ..++..-...|-.|
T Consensus 209 I~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 209 IHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------CcchhhHHHHHHHHHHHHHHHH
Confidence 7777776666 4555667777777777777777777777777766 22232222222222
Q ss_pred -HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004811 524 -SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (729)
Q Consensus 524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (729)
+.-....++|.++++..++.++..|.. ..........+..|+...|++-+|+....+++++. +..+.+
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--------~~dv~~ 343 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--------PDDVQV 343 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------chHHHH
Confidence 223345567777777777777655442 12222344567788999999999999999998862 335788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
+...+.+|+....|+.|+.-|++|.+. ++....+...+-
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~--------n~sn~~~reGle 382 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL--------NESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc--------CcccHHHHHHHH
Confidence 999999999999999999999999998 666555554443
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=7e-16 Score=156.54 Aligned_cols=375 Identities=16% Similarity=0.073 Sum_probs=276.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
...+....+.-..|+.-+..+...+- ++-|+..|..|++.+. ..-..|...+..--..|..+.-..+|++
T Consensus 506 igigvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp---------~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 506 IGIGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFP---------CKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HhhccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34555666667778888888888875 8888888888888762 2234455555555667788888888888
Q ss_pred hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 004811 291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 370 (729)
++... +..+. .|+..+..+...|+...|...+.++++. +|...++|+.--.+.+...+++.|.
T Consensus 576 av~~~-----pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 576 AVEQC-----PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HHHhC-----Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHH
Confidence 88765 22221 3677778888888888888888888887 6777778877777888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHH
Q 004811 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450 (729)
Q Consensus 371 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 450 (729)
.+|.++....+. ..+|..-+.+...+++.++|+.+++.+++. .|.....|..+|.++..+++.+.
T Consensus 639 ~llakar~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 639 DLLAKARSISGT---------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HHHHHHhccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHH
Confidence 888888765433 245777777888888888888888888764 46666788888888888888888
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 004811 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (729)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (729)
|...|...+.. .|.....|..|+.+-...|+.-.|...++++.-. .|.....|.....+-.+.
T Consensus 704 aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 704 AREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHc
Confidence 88888888877 5777888888888888888888888888887655 444456677777777888
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
|+.+.|.....+|++-+|.. | .+|..-..+.-.-++-..++. |++ +... .+.++..+|..+
T Consensus 767 gn~~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~D----ALk---kce~-----dphVllaia~lf 827 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSID----ALK---KCEH-----DPHVLLAIAKLF 827 (913)
T ss_pred CCHHHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHH----HHH---hccC-----CchhHHHHHHHH
Confidence 88888888888888887766 1 222211111112222222222 222 2211 235778889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+...++++|.++|.+++++ +|+..++|..+-..+...|.-++-.+.|.++...
T Consensus 828 w~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 9999999999999999999 8999999999999999999988888888888753
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=155.62 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=233.6
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811 360 HVQALQFSEAQKFCQMALDIHKDNG--SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (729)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (729)
++..++...|-..+...+++..... ...-.........+|.+|.++|-+.+|...++.++.. ......+..
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfll 261 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFLL 261 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHHH
Confidence 4445566666666665555443222 1112222344567999999999999999999988752 223467788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004811 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (729)
|+.+|.+..+...|+..|.+.++. .|.....+..+|.++..++++++|.++|+.+++. ++..+
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~nv 324 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPINV 324 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCccc
Confidence 999999999999999999999998 6888899999999999999999999999999998 55556
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.+...+|.-|+.-++.+-|+.+|++.+++--.. ...++++|.+++..++++-++..|++|+..... +.
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~ 392 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PG 392 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cc
Confidence 777788889999999999999999999986555 478899999999999999999999999987543 33
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (729)
..+.+|+++|.+....|++.-|..+|+-++.. +++...++.+||.+-.+.|+.++|..++..+-..
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~------ 458 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV------ 458 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh------
Confidence 45789999999999999999999999999988 8999999999999999999999999999998866
Q ss_pred CCChhHHHHHHHHHHH
Q 004811 678 TANPDVDDEKRRLAEL 693 (729)
Q Consensus 678 ~~~p~~~~~~~~La~~ 693 (729)
.|+..+..++|+.+
T Consensus 459 --~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 --MPDMAEVTTNLQFM 472 (478)
T ss_pred --CccccccccceeEE
Confidence 57777776666544
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.77 E-value=1.2e-14 Score=148.15 Aligned_cols=421 Identities=14% Similarity=0.103 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
-..++..+.-.+..++ |.+.+...+..++-+ |+....+...|..+..+|+-++|..+...++..+
T Consensus 7 E~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----- 71 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQ-YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----- 71 (700)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccC-----
Confidence 3467788888888887 888888887777632 4557778889999999999999999999999864
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
... -.+|..+|.++....+|++|+.+|+.|+.+ ++++..++..++.+..+.++++-....-.+.++..
T Consensus 72 ~~S----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 72 LKS----HVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred ccc----chhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 222 236999999999999999999999999999 79999999999999999999999999988888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND--QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
+... ..|...+..+...|++..|...++.......... .......+......+....|.+++|++.+..-
T Consensus 140 ~~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 140 PSQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred hhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 7654 4588999999999999999998887765443111 12233455556677788889888888776654
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH-
Q 004811 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI- 537 (729)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 537 (729)
-.- ..+........|.++..++++++|...|...+.. .|+....+..+-.++..-.+--+++
T Consensus 212 e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---------nPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 212 EKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---------NPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred hhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 332 2333455667799999999999999999999887 4444455555544443222222233
Q ss_pred HHHHHHHHHHHhCCCC---------CCcHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHh-CC-
Q 004811 538 KLLQKALKIYNDAPGQ---------QSTVAGIEAQMGVMYYML-------------GNYSDSYDSFKNAISKLRAI-GE- 593 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~---------~~~~~~~~~~la~~~~~~-------------g~~~~A~~~~~~al~~~~~~-~~- 593 (729)
..|...-+.++...-. .......+...-.-.+.. .+..+ ..++++.+..+... .+
T Consensus 275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccc
Confidence 3333322222211000 000000000000000001 11121 12444444333322 11
Q ss_pred -----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811 594 -----------RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 594 -----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
..+....++++.++.-+...|+++.|..++..|+.. .|...+.+..-|+++...|++++|.
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHH
Confidence 134556788889999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.++.++.++- .++ ..+-..-|.-..+..+.++|. +.+.+.
T Consensus 426 ~~l~ea~elD-------~aD-R~INsKcAKYmLrAn~i~eA~-~~~skF 465 (700)
T KOG1156|consen 426 AWLDEAQELD-------TAD-RAINSKCAKYMLRANEIEEAE-EVLSKF 465 (700)
T ss_pred HHHHHHHhcc-------chh-HHHHHHHHHHHHHccccHHHH-HHHHHh
Confidence 9999998762 222 222224677777788888887 655443
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=4.2e-15 Score=154.51 Aligned_cols=440 Identities=17% Similarity=0.123 Sum_probs=322.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc
Q 004811 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH 303 (729)
Q Consensus 224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (729)
+......+.-+. |.++++-+.-..+...+... -. +.+..|..+.......|+|+.+.+.|++++...
T Consensus 287 llli~es~i~Re-~~~d~ilslm~~~~k~r~~~-~q---nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------- 353 (799)
T KOG4162|consen 287 LLLIEESLIPRE-NIEDAILSLMLLLRKLRLKK-FQ---NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------- 353 (799)
T ss_pred HHHHHhhccccc-cHHHHHHHHHHHHHHHHHhh-hc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--------
Confidence 333444444444 57888877665555443321 11 235567778888899999999999999998764
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET-CRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
......|+.++.+|...|.-..|+...+..+...+ .|..... ++.-..++...+.+++++.+..+++.....
T Consensus 354 -~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~ 426 (799)
T KOG4162|consen 354 -FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG 426 (799)
T ss_pred -hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh
Confidence 22344599999999999999999999998887732 1433334 444445566789999999999999996633
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811 383 NGSPASLEEAADRRLMGLICETKG-----------DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (729)
.. ....+.++..+|.+|..+- ...++++.+++|++. ++....+.+.++.-|..+++.+.|
T Consensus 427 ~~---~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~------d~~dp~~if~lalq~A~~R~l~sA 497 (799)
T KOG4162|consen 427 QR---SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF------DPTDPLVIFYLALQYAEQRQLTSA 497 (799)
T ss_pred hh---hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHHhHHHH
Confidence 32 2233567888888875442 245666666666542 233336778999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc
Q 004811 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (729)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (729)
..+.++++++ +....+.+|..+|.++...+++.+|+...+.+++-+... .........+-...+
T Consensus 498 l~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N---------~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 498 LDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN---------HVLMDGKIHIELTFN 561 (799)
T ss_pred HHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh---------hhhchhhhhhhhhcc
Confidence 9999999998 345668899999999999999999999999999885432 222333344555589
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----------------
Q 004811 532 ELEQAIKLLQKALKIYNDAPGQQSTVA--GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE---------------- 593 (729)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------- 593 (729)
+.++|+..+...+.++...++...... ......+.+.....+..+|...+.++..+......
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence 999999999999999886544332111 12222334444555667777777776665442111
Q ss_pred CC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 594 RK--SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 594 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+. .......|...+..+...++.++|..++.++-.+ .|.....|+..|.++...|++++|.+.|..++.+
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 00 1122346778889999999999999999999999 8999999999999999999999999999999987
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH--HHHHHHhhccc--cCCCcccc
Q 004811 672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ--SLETLLDANSR--VNNDGIEL 725 (729)
Q Consensus 672 ~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~--~l~~al~~~p~--~~~~~l~~ 725 (729)
+|+...+...||.++.+.|+..-|. . .+..+++++|. ..+..+|.
T Consensus 714 --------dP~hv~s~~Ala~~lle~G~~~la~-~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 714 --------DPDHVPSMTALAELLLELGSPRLAE-KRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred --------CCCCcHHHHHHHHHHHHhCCcchHH-HHHHHHHHHhhCCCCHHHHHHHHH
Confidence 7888889999999999999998888 7 99999999998 55555543
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.5e-15 Score=142.98 Aligned_cols=289 Identities=12% Similarity=0.100 Sum_probs=236.0
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004811 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (729)
-+.+...+..+|.+++..|++++|+..|+++.-+.+... ...-..|.++...|+++.-.......+.+.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--- 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAKV--- 296 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhhh---
Confidence 477888999999999999999999999999998876654 346667888888999987766655444321
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
...+.-|+.-+...+...++..|+.+-+++++. ++....++...|.++...++.++|+-.|+.|..+
T Consensus 297 ---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 297 ---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred ---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 122334555677788899999999999999998 7888899999999999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 004811 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG-VMYYM-LGNYSDSYDSFKN 583 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~ 583 (729)
.|....+|..|..+|...|++.+|......++..++.. +.++..+| .+++. -.--++|.+++++
T Consensus 364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 55668899999999999999999999999999998876 45555564 33332 3345789999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
++.+ .+.+..+-..+|.++...|.++.++.++++++.. .++.. .+..||.++...+.+++|.+
T Consensus 430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~~-LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDVN-LHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------ccccH-HHHHHHHHHHHhhhHHHHHH
Confidence 9886 2335667788999999999999999999999998 55544 78899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (729)
+|..|+.+ +|..-.++..|-.+-...
T Consensus 493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 493 YYYKALRQ--------DPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHhc--------CccchHHHHHHHHHHhcc
Confidence 99999987 687777776665554433
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.5e-17 Score=167.04 Aligned_cols=266 Identities=20% Similarity=0.161 Sum_probs=114.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.+|.+++..|++++|++++.+.+.... ++. ....|..+|.+....++++.|+..|++++.. ++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPD----DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---ccc----ccccccccccccccccccccccccccccccc--------cccc
Confidence 569999999999999999976654320 011 2245788999999999999999999999887 4555
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
...+..++.+ ...+++++|+.++.++.+..+.. ..+..+..++...++++++...+.++.. ....+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~ 143 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP 143 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence 6667777777 68999999999999887765322 2356677788999999999999988653 22234
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
.....+..+|.++...|++++|+..|+++++. .|....+...++.++...|+++++...+.........
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~--- 212 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD--- 212 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence 55678899999999999999999999999999 7888899999999999999999988888887777322
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|..++.+++...
T Consensus 213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 23457788999999999999999999999887665 4677899999999999999999999988754
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=2e-17 Score=166.10 Aligned_cols=266 Identities=23% Similarity=0.251 Sum_probs=113.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
..+|.+++..|++++|++.+.+.+... .++.....|..+|.+....++++.|+..|++++.. .+....
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence 366999999999999999996654321 13444577788999999999999999999999987 455666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
.+..++.+ ...+++++|+.+++++.+... . ...+..+..++...++++++...++++..... ..
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-------~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-------D---PRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP 143 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred cccccccc-ccccccccccccccccccccc-------c---cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence 77788888 789999999999988876521 1 23455667788999999999999999774221 11
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.-..++..+|.++...|++++|+.+|++++++. +....++..++.++...|+++++.+.+......
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------ 209 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKA------ 209 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence 235678899999999999999999999999973 224567888999999999999988888887776
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.|.....+..+|.+|..+|++++|+.+|++++.. +|..+.++..+|.++...|+.++|. ..+++++..
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~ 277 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL 277 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccccc
Confidence 3444457788999999999999999999999976 6888999999999999999999999 988887753
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=3.3e-15 Score=163.89 Aligned_cols=254 Identities=14% Similarity=0.034 Sum_probs=202.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (729)
+++++|+.+|++++.+ +|..+.++..+|.++... +++++|+..+++++++ +|....+
T Consensus 275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 4578999999999753 566677888888877643 3489999999999998 7888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004811 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (729)
+..+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..+++++++.|...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 999999999999999999999999999 445567899999999999999999999999999976642
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
..+..++.+++..|++++|+..+++++... ++.....+..+|.++...|++++|...+.+....
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 233445666778999999999999987642 1223457888999999999999999999887666
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.|....+...++..|...| ++|...+++.++..... +.++ ..++.+|.-.|+.+.+. .+ +++.+.+.
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~-~~-~~~~~~~~ 537 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEK-MW-NKFKNEDN 537 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHH-HH-HHhhccch
Confidence 6777778889999999888 48888888876654321 1122 23788888899988887 55 66655443
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.73 E-value=2.2e-14 Score=135.93 Aligned_cols=345 Identities=15% Similarity=0.153 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004811 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (729)
.-....|..++...+ +.+|+..+.+.+.-.... ......+-.+..+...+|.|++++.+--..+..... .
T Consensus 7 k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~---~ 76 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE---L 76 (518)
T ss_pred HHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---H
Confidence 345677888899987 999999999988776443 334556677788889999999988877666655422 3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
++......++.+++..+....++.+++.+-...+.+- |... ..-......++.++.-++.|+++++.|+.|+++.
T Consensus 77 ~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A 152 (518)
T KOG1941|consen 77 EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA 152 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 3344567789999999999999999998877766651 1111 1234566778999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
..+.++ ..+..++..||.++....|+++|+-+..+|..+....+.. .....+++.++..+..+|+.-.|.++.+
T Consensus 153 ~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~ 230 (518)
T KOG1941|consen 153 HNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCE 230 (518)
T ss_pred hccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 888765 4445678899999999999999999999999888766522 2345678889999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHH-
Q 004811 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ- 535 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~- 535 (729)
++.++.-..+ |.+..+..+..+|.+|...|+.+.|..-|+.|+....... +......++...|.++....-..+
T Consensus 231 Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g---drmgqv~al~g~Akc~~~~r~~~k~ 305 (518)
T KOG1941|consen 231 EAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG---DRMGQVEALDGAAKCLETLRLQNKI 305 (518)
T ss_pred HHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999988776 5788889999999999999999999999999999877642 344556777778888776655555
Q ss_pred ----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 536 ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 536 ----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
|+++-.+++++.... |....+..+...++.+|..+|.-++-...+.++-+..
T Consensus 306 ~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred cccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999998887 7777777888999999999998888877777766553
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.73 E-value=6.2e-15 Score=156.48 Aligned_cols=437 Identities=15% Similarity=0.085 Sum_probs=298.6
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (729)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (729)
+......+|..+.++-.+|..|....+ ...|..+|.+|.++- +..+.+...++..|....+++.|.....
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 344455566666666666666655554 566666666665541 2234455556666666666666666644
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
.+-+... .......|..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|++..|
T Consensus 551 ~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 551 RAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH
Confidence 4333221 1122334667889999999999999999999988 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHcCCH
Q 004811 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSLSRY 448 (729)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~ 448 (729)
++.|.++..+.|... ...+..+.+....|.|.+|+..+...+...... .-....+.++..++..+...|=+
T Consensus 616 lKvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred HHhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999998887653 457788999999999999999998877544322 12345677788888888888989
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C--------------------CH------HHHHHHHHH
Q 004811 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT---G--------------------KL------RESKSYCEN 499 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g--------------------~~------~~A~~~~~~ 499 (729)
.+|..+++++++.+.-............|..++....-. . .. --|.+++-.
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 999999999988776544222122223333333322211 1 00 012222222
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 004811 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 571 (729)
.+.+. .....|++||.-|+. +.+...|+.++.+++++..+. ...|+.||.+ ...
T Consensus 768 hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~ 829 (1238)
T KOG1127|consen 768 HLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGI 829 (1238)
T ss_pred HHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hcc
Confidence 22221 124567888887766 234457999999999998766 3567778877 566
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
|++.-|..+|-+++... +.....|.++|.++....+++.|...|.++..+ +|.....|...+.+
T Consensus 830 gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali 893 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALI 893 (1238)
T ss_pred chhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHh
Confidence 88888888888877652 224567888888888888888888888888887 78777777777777
Q ss_pred HHHcCChHHHHHHHHHHHHHHH-----------------------------------------HHcCCCChhHHHHHHHH
Q 004811 652 YDAIGRLDDAIEILEFVVGIRE-----------------------------------------EKLGTANPDVDDEKRRL 690 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~-----------------------------------------~~~g~~~p~~~~~~~~L 690 (729)
....|+.-++...|...-.+.. ..+=..+|+...++...
T Consensus 894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHH
Confidence 7777766666666655211110 01113578888888889
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 691 AELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
|.++..++.+++|. ....+++.+
T Consensus 974 gstlEhL~ey~~a~-ela~Rligl 996 (1238)
T KOG1127|consen 974 GSTLEHLEEYRAAL-ELATRLIGL 996 (1238)
T ss_pred HhHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999888 776666544
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=2.1e-15 Score=165.41 Aligned_cols=263 Identities=11% Similarity=-0.030 Sum_probs=202.1
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc---------CChHHHHHHHHHhc
Q 004811 224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI 292 (729)
Q Consensus 224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 292 (729)
++.+|...+... +.+++|+.+|++|+++. |..+.++..+|.+|... +++++|+..+++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445555444332 22678888888888753 45577788888887644 34899999999999
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004811 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (729)
++. ++++. ++..+|.++...|++++|+.+|++++++ +|....+++.+|.++...|++++|+..
T Consensus 332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 986 44443 4888999999999999999999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
+++++++.|... ..+..++.+++..|++++|+..+++++.. ..+.....+..+|.++..+|++++|.
T Consensus 395 ~~~Al~l~P~~~--------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 395 INECLKLDPTRA--------AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHHHhcCCCCh--------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999987643 22445566677789999999999887642 12444567788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004811 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
..+.+.... .|....++..++..|...| ++|...+++.++..... ..-...++.+|.-.|+
T Consensus 462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~ 522 (553)
T PRK12370 462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE 522 (553)
T ss_pred HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence 999887665 6777778888898888888 48888888877764431 1112236777788888
Q ss_pred HHHHHHHHHHHHH
Q 004811 533 LEQAIKLLQKALK 545 (729)
Q Consensus 533 ~~~A~~~~~~al~ 545 (729)
-+.+..+ +++.+
T Consensus 523 ~~~~~~~-~~~~~ 534 (553)
T PRK12370 523 AIAEKMW-NKFKN 534 (553)
T ss_pred hHHHHHH-HHhhc
Confidence 8777766 55443
No 64
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.72 E-value=2.4e-14 Score=135.70 Aligned_cols=345 Identities=16% Similarity=0.121 Sum_probs=275.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (729)
...-|.-++...++++|+..+.+.+... ++....+..+-.+..+...+|.|++++.+--..+..+... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3445677788889999999999888763 2223456667788889999999999988766666665443 1224
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
...+++.+++..+....+|.+++.+.+..+.+-........ ......+|..+..++.++++++.|+.|+.+...+++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~---gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG---GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc---chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 56688999999999999999999998888776433322111 245677999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
......++..||.+|....++++|+-+..+|.++.+...-.+ ......+++.++..+..+|+...|.++.+++.++.-
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999987765322 234566788999999999999999999999999977
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004811 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDS 580 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~ 580 (729)
.. .+.+..+..+.-+|.+|...|+.+.|..-|++|..+.... |+.-....++...+.++....-..+ |+++
T Consensus 238 ~~---Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 238 QH---GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred Hh---CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 63 3566778889999999999999999999999999988766 6555555666677777766554444 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
-.+++++...++.+. ....+...++.+|..+|.-++=...+.++-+.
T Consensus 314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 999999999888764 34567888999999999888777777776554
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=1.4e-15 Score=136.25 Aligned_cols=209 Identities=17% Similarity=0.135 Sum_probs=184.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
......+...||.-|+..|++..|...+++|++. +|....+|..+|.+|...|+.+.|.+.|++|+.+.++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 3455678899999999999999999999999999 6667889999999999999999999999999999887
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..++++.|..++.+|++++|..+|++|+.. +.-.....++.++|.|..+.|+++.|.++|++++++
T Consensus 102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7 578899999999999999999999999873 222234678999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+|....+...++......|++..|..++++.... -+-.+..+....++-...|+...+. .+=.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~ 231 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQA 231 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 8998899999999999999999999999987754 2355667777788888999999988 7777
Q ss_pred HHHhhccc
Q 004811 710 TLLDANSR 717 (729)
Q Consensus 710 ~al~~~p~ 717 (729)
++-...|.
T Consensus 232 qL~r~fP~ 239 (250)
T COG3063 232 QLQRLFPY 239 (250)
T ss_pred HHHHhCCC
Confidence 78888887
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=3.7e-14 Score=149.94 Aligned_cols=314 Identities=14% Similarity=0.084 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
+......|.+....|+++.|.+.+.++.+..+.. ...+...|.++...|+++.|..++.++.+.. ++..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~ 152 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDN 152 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCc
Confidence 3445666778888999999999998887765332 2446778999999999999999999886422 1211
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|...+.+.++...
T Consensus 153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---- 218 (409)
T TIGR00540 153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---- 218 (409)
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence 123444589999999999999999999988 788889999999999999999999999998887621
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
.+.............-+...+..+++...+.++....+.. ......++..++..+...|++++|...++++++...
T Consensus 219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 1122222222222222234445555556666666655432 111246778899999999999999999999998632
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 004811 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
. ..... ............++...+++.++++++. +|+.. ..+..+|.++.+.|++++|.++|++
T Consensus 295 d-----~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 295 D-----DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred C-----cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1 11000 0122233334468889999999999988 77777 7888999999999999999999995
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+..+ ..+|+... +..||.++...|+.++|. +++++++..
T Consensus 361 a~a~------~~~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l~~ 399 (409)
T TIGR00540 361 VAAC------KEQLDAND-LAMAADAFDQAGDKAEAA-AMRQDSLGL 399 (409)
T ss_pred hHHh------hcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence 4332 11566555 559999999999999999 999998764
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.9e-13 Score=130.77 Aligned_cols=432 Identities=15% Similarity=0.090 Sum_probs=299.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
-....|...|.--..+++ +..|...|++||..- ......+...+.+-++......|..++.+|+.+.+.
T Consensus 71 ~~~~~WikYaqwEesq~e-~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR- 139 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKE-IQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR- 139 (677)
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-
Confidence 344455566655555554 666666666666531 122445667788888888888888888888877521
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (729)
.-..|+....+-..+|+..-|.+.|++-++. .|+. .+|......-......+.|...|++.+-
T Consensus 140 --------VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 140 --------VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred --------HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 1123666666667788888888888888777 3433 5666666666667777788888777766
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
..|+. ..|...+..-...|+...|...|.+|+..+. ++......+...|..-..+..++.|...|+-|
T Consensus 203 ~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA 270 (677)
T KOG1915|consen 203 VHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYA 270 (677)
T ss_pred ecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 4467777777777888888888877765432 23334444555555556666666666666655
Q ss_pred HHHH---------------HHhcC---------------------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 459 LTAF---------------KTNKG---------------------ENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 459 l~~~---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
++.. ++.+| .++|.+-.+|+..-.+-...|+.+.-.+.|++|+.
T Consensus 271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 5431 11111 12566667888888888888999999999999987
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 503 IYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
-................|.+.+.. -....+.+.+.+.|+.++++.|.. ..+.+.+|...|.....+.+...|.+.+
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 632211000011122233333321 234678999999999999987643 4577888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004811 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (729)
-.|+..+++ ..++.....+-.++++++....+|++-++. .|....+|...|.+-..+|+.+.|
T Consensus 428 G~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 428 GNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHH
Confidence 999877543 234455566777889999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...|+-|+..-. -+-|. ..+......-...|.++.|. ..|+.+|+..+.
T Consensus 491 RaifelAi~qp~----ldmpe--llwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h 539 (677)
T KOG1915|consen 491 RAIFELAISQPA----LDMPE--LLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHhcCcc----cccHH--HHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence 999999886310 11122 23444556667889999999 999999998876
No 68
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.4e-14 Score=153.13 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
+...+..|...+..|+ ++.|.+.+.++.+.. +.| ...+...|.++..+|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~-------~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA-------AEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC-------CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 3455678888888997 999999888876642 222 3446677999999999999999999997654
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
++.. +.+....+.++...|++++|...+++.++. .|....++..++.++...|++++|...+.+.++..
T Consensus 149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2221 112445699999999999999999999988 68888999999999999999999999999888763
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
.... ............-....+..+++.+.+..+..... ...+.....+..++..+...|++++|+..++++++
T Consensus 218 ~~~~----~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 LFDD----EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred CCCH----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 2111 10111111222222333444444455554443211 11223467788899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHH
Q 004811 461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (729)
Q Consensus 461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (729)
. .|+.... ...........++...++..++++++.. .+++. ...+..+|.++...|++++|.+
T Consensus 292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~-~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------DDKPK-CCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------CCChh-HHHHHHHHHHHHHcccHHHHHH
Confidence 7 3443321 1222333344578889999999998872 22332 3678899999999999999999
Q ss_pred HHHH--HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811 539 LLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 539 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
+|++ +++..++. ..+..+|.++...|+.++|..+|++++...-.+++
T Consensus 357 ~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 357 AFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred HHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 9995 55543332 34568999999999999999999999887655443
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2.7e-15 Score=146.85 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=177.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.......+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH---------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456788999999999999999999999999987 3334678889999999999999999999999988654
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..++..+|.++...|++++|+.+|++++.... .......+..+|.++...|++++|..+|.+++..
T Consensus 98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 35778999999999999999999999987421 1123457888999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
.|....++..+|.++...|++++|+.++++++.+ .|.....+..++.++...|+.++|. ...+
T Consensus 165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 227 (234)
T TIGR02521 165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA 227 (234)
T ss_pred --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 6777778999999999999999999999999876 2445666778899999999999999 8888
Q ss_pred HHHhhcc
Q 004811 710 TLLDANS 716 (729)
Q Consensus 710 ~al~~~p 716 (729)
.+....|
T Consensus 228 ~~~~~~~ 234 (234)
T TIGR02521 228 QLQKLFP 234 (234)
T ss_pred HHHhhCc
Confidence 8776654
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=2.9e-13 Score=138.28 Aligned_cols=443 Identities=17% Similarity=0.159 Sum_probs=308.6
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (729)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (729)
........|+.+..+-..|..+...|+ -++|..+...+++. ++....||+.+|.++....+|++|+.+|+
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344455788888999999999999998 89999998888863 24457899999999999999999999999
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
.|+.+. +++ ..+|..++....++++++-....-.+.+++ .|.....|..+|..+...|++..|
T Consensus 100 nAl~~~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 100 NALKIE-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhcC-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999986 333 345899999999999999999988888888 688889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH
Q 004811 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449 (729)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 449 (729)
....+...................+......+....|.+++|++.+..-.. ...+........|.++..+++++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHhhhHHHHHHHHhhHH
Confidence 999988877665444444455566777778888899999999988764321 22233345566789999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCC----------CCCChHHHHH
Q 004811 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPV----------PGVPPEEIAS 518 (729)
Q Consensus 450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~----------~~~~~~~~~~ 518 (729)
+|...|...+.. +|++...+..+-.++...-+.-+++ ..|...-+.+.... .+..-+....
T Consensus 237 eA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 237 EAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred hHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence 999999999987 7888877777777775322333333 44433333222110 0101111111
Q ss_pred HH-------------HHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--------------CCCCcHHHHHHHHHHHHHHc
Q 004811 519 GL-------------TDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------GQQSTVAGIEAQMGVMYYML 571 (729)
Q Consensus 519 ~~-------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~~ 571 (729)
-+ ..+-.+|. +.... ..+++.+..+.... ..+..+.+.++.++.-+...
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 11 11111111 11111 13444333332211 12346677888999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
|+++.|..+++.|+.- .+.....+...|+++...|++++|..++.++.++ +-....+-..-|..
T Consensus 385 g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAKY 448 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAKY 448 (700)
T ss_pred ccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHHH
Confidence 9999999999999874 4557788889999999999999999999999987 32222233467888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 652 YDAIGRLDDAIEILEFVVGIREEKLGT-ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
..+..+.++|.+...+.-.-.....+. ..-........-|..|.++|++..|+ +-|..+-..
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~ 511 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKH 511 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHH
Confidence 889999999988876554321100000 01111222234478889999998888 655544433
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=2.2e-15 Score=151.34 Aligned_cols=247 Identities=16% Similarity=0.125 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
+..+.++..+.+++... .-++...+..++.+|.+|...|++++|+..|++++++ .|....++..+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 45677777777766322 1234455788999999999999999999999999998 7888999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004811 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (729)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (729)
..|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++.+..+ ....+ .
T Consensus 110 ~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~---~ 172 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALW---L 172 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---H
Confidence 999999999999999998 444567899999999999999999999999999876542 11111 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
.+....+++++|+..|.+++... .. . .|. .+.++...|++.++ ..++.+.+.+..... -.|....+|
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~----~~--~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~ 239 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKL----DK--E----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETY 239 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhC----Cc--c----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHH
Confidence 23455788999999998766431 11 1 111 34555556665443 233333321110000 045667899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+.+|.++..+|++++|+.+|++++.+. .|+.....+.+.++....++
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999862 24666666666665554443
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=3.1e-15 Score=134.00 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
....+...||.-|...|++..|...+++||+. +|....+|..+|.+|...|+.+.|.+.|++|+.+.|++++
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence 44567889999999999999999999999999 8999999999999999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
++++.|..++.+|++++|...|++|+. .+..+....++.++|.|..+.|+++.|..+|++++++
T Consensus 105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---- 168 (250)
T COG3063 105 --------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---- 168 (250)
T ss_pred --------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence 599999999999999999999999975 4556677889999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
+|........++..++..|+|..|..++++...... ..+..+.....+-...|+-+.|-.+-.+...
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788889999999999999999999999988776621 2355666666777888999988888777777
Q ss_pred HHHhC
Q 004811 546 IYNDA 550 (729)
Q Consensus 546 ~~~~~ 550 (729)
.+|..
T Consensus 236 ~fP~s 240 (250)
T COG3063 236 LFPYS 240 (250)
T ss_pred hCCCc
Confidence 76654
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.70 E-value=1.9e-14 Score=152.78 Aligned_cols=374 Identities=14% Similarity=0.106 Sum_probs=282.4
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004811 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (729)
..+...|+..|-+++++. + ....++..||.+|....+...|..+|++|.++ ++..+.+....+
T Consensus 471 rK~~~~al~ali~alrld-----~----~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-----V----SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-----c----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence 445788999999999886 2 23446889999999998999999999999999 888999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (729)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (729)
..|....+++.|...+..+-+..+... ....|..+|..|...+++..|+..|+.+++ .+|....+|..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR------~dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALR------TDPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhc------CCchhHHHHHH
Confidence 999999999999998655555443322 123466699999999999999999999875 47778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004811 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (729)
+|.+|...|++..|++.|.++..+ +|......+..+.+....|+|.+|+..+...+..+..-.. .....+
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa 671 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA 671 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence 999999999999999999999998 8988899999999999999999999999998877544211 123457
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH-----------------------cCC
Q 004811 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM-----------------------LGN 573 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~-----------------------~g~ 573 (729)
.++..++..+...|-+..|..+++++++.+.-..... ......|..++.++.- ++.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 7788888888888888889999988887765332211 1111112222221111 111
Q ss_pred H------HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 574 Y------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 574 ~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
. --|.+++-..+.+.. .+..|+++|.-|++ +.+...|+.++.+++.+ ..
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~---------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~a 814 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAI---------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CA 814 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhh---------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hh
Confidence 0 112233333332211 13467888877765 22345899999999998 56
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.....|..||.+ ...|++.-|..+|-+.+.. .|.....|.++|.++....+++-|. ..|..+..++|.
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL 882 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence 666678888877 6668888888888888765 5778888889999998889999888 889988888887
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.9e-13 Score=133.40 Aligned_cols=429 Identities=13% Similarity=0.111 Sum_probs=270.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004811 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (729)
..++...+.+...++ |++|+....+.+.+. |+...+++.--.+..+.++|++|+.+.+.-.... .
T Consensus 13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V 77 (652)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence 456666677778887 888887777777653 3345567777788899999999997666544321 0
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.....+..|.|.++++..++|+..++-+ ++....++...|.+++++|+|++|+..|+..++...
T Consensus 78 -----~~~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 78 -----INSFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred -----cchhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 1111368899999999999999998821 233345677789999999999999999998876543
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
+..+. -...+.++..-...++ .....+. .......+++.|.++...|+|.+|++.+++++.
T Consensus 142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33211 1111122211111111 1111222 233567889999999999999999999999999
Q ss_pred HHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH
Q 004811 461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
++++....++ .....+...|+.++..+|+..+|...|...+..... +.+..+.+-++|..+-....-+
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence 9887764332 235567888999999999999999999998876322 2333444444443221111111
Q ss_pred H---------------------------HHH-----------HHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 004811 534 E---------------------------QAI-----------KLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY 574 (729)
Q Consensus 534 ~---------------------------~A~-----------~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 574 (729)
+ +++ .--.++.++....++..+ ....++..-+. ......+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t-~~~~~~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEAT-KVREKKH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHH-HHHHHHH
Confidence 1 000 000112222222222221 11111111111 1111133
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHH
Q 004811 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG--PYHPDTLGVYSNLAGTY 652 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~ 652 (729)
.+|..+ +....+.++.....+...++.+...+|+++.|++.+...+........ ...|. +-..+-.+|
T Consensus 358 ~ka~e~-------L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~ 427 (652)
T KOG2376|consen 358 KKAIEL-------LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG---TVGAIVALY 427 (652)
T ss_pred hhhHHH-------HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHH
Confidence 333333 333334444444567788899999999999999999955533222111 11333 334555667
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 653 DAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 653 ~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...++.+-|...+..|+..++...... +.....+..++.+-.+.|+.++|. ..|+++++.+|.
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~ 490 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN 490 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence 888888889999999998887665433 666677778888888899999999 999999998887
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=9.2e-15 Score=143.07 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=172.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
+.......+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 95 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-- 95 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 34455778899999999999999999999999887 67778899999999999999999999999999883
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
+....++..+|.++...|++++|+.++++++.... .......+..+|.++...|++++|..+|.+++.
T Consensus 96 -------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 96 -------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred -------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345788999999999999999999999987421 122245677899999999999999999999988
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
..+ ....++..+|.++...|++++|..++++++.. .|.....+..++.++...|+.++|..+.+
T Consensus 164 ~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 IDP--------QRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hCc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 621 12457888999999999999999999999887 45556677788999999999999999887
Q ss_pred HHHHH
Q 004811 667 FVVGI 671 (729)
Q Consensus 667 ~al~~ 671 (729)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76543
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.9e-13 Score=128.23 Aligned_cols=283 Identities=13% Similarity=0.150 Sum_probs=226.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--ChhHHH
Q 004811 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ--DAEVAS 433 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 433 (729)
-|.-+.-..+.++|+..|...++..+... .+...||.+|...|..+.|+...+..+. .++ ......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHH
Confidence 45555667889999999999998665543 5689999999999999999998865432 122 234466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
++..||.-|+..|-++.|...|....+. ......++..|..+|....+|++|+...++...+-.+ ...
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~ 176 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYR 176 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cch
Confidence 7889999999999999999999988775 3445678889999999999999999999988887433 345
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
..++..|..||..+....+.+.|+..+.+|++..++. ..+-..+|.++...|+|+.|++.++.+++.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------ 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ------ 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence 6788999999999999999999999999999987766 355567899999999999999999988875
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
++.+.+.++..|..+|..+|+.++.+..+.++.+. .+. ..+...++..-....-.+.|..++.+-+..
T Consensus 244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 45678889999999999999999999999999887 332 234556677777777778888877776643
Q ss_pred HHcCCCChhHHHHHHHHHHHH
Q 004811 674 EKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 674 ~~~g~~~p~~~~~~~~La~~~ 694 (729)
+|.... .++|....
T Consensus 312 ------~Pt~~g-f~rl~~~~ 325 (389)
T COG2956 312 ------KPTMRG-FHRLMDYH 325 (389)
T ss_pred ------CCcHHH-HHHHHHhh
Confidence 676544 34444433
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.5e-13 Score=144.41 Aligned_cols=303 Identities=13% Similarity=0.072 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
+...+.-|......|+|++|.+.+.++-+. .+. + ...+...+.+....|+++.|..++.++... .+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~ 149 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--P--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD 149 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--h--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 344456677777789999999776654432 111 1 223445566779999999999999998642 22
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811 430 EV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 430 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+. .......+.++...|++++|+..+++.++. .|....++..++.+|...|++++|+..+.+..+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-- 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-- 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence 21 122234589999999999999999999988 7888899999999999999999999999988876211
Q ss_pred CCCChHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 509 PGVPPEEIA----SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 509 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
+..... .++..+........+ ...+.+..+..+.. .+....+...++..+...|+.++|...++++
T Consensus 220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122222 122222222222222 23333333332221 1122467788999999999999999999988
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (729)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (729)
++. .. ++ ......+. ...++++++++.+++.++. +|+....+..+|.++...|++++|.++
T Consensus 290 l~~-----~~-~~---~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 290 LKR-----QY-DE---RLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred Hhc-----CC-CH---HHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 773 11 11 11122222 2458999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 665 LEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
|+++++. .|+.. .+..|+.++...|+.++|. ++|++++.+.
T Consensus 351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLMLT 391 (398)
T ss_pred HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHhhh
Confidence 9999986 56654 4568999999999999999 9999998764
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=1.1e-13 Score=144.74 Aligned_cols=334 Identities=13% Similarity=0.023 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
..++..+|.++...|+.+.+...+.++...... +....+.....+.++...|++++|...++++++..|...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--- 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--- 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---
Confidence 345889999999999999998888888877533 334556677889999999999999999999998876542
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
.++.. +..+...|++..+.....+++.. ..+..+.....+..+|.++..+|++++|+..+++++++
T Consensus 78 -----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------ 143 (355)
T cd05804 78 -----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------ 143 (355)
T ss_pred -----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 22333 55566666655555555555433 34567777788889999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.|....++..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..|++++...
T Consensus 144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 6777889999999999999999999999999987432 122334567789999999999999999999986443
Q ss_pred HhCCCCCCcHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 548 NDAPGQQSTVAGI--EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (729)
Q Consensus 548 ~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (729)
+. ....... ...+...+...|....+..+ +.+.......... ..........+.++...|+.++|...++.
T Consensus 217 ~~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 217 AE----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred cC----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 21 1111111 11223333444543333222 2222222211111 11223334678888999999999999999
Q ss_pred HHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811 626 ARSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 626 al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (729)
......... .........+....|.++...|++++|++.+..++.+...+-|
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 887655410 0012334557788899999999999999999999998865544
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2e-15 Score=152.33 Aligned_cols=269 Identities=16% Similarity=0.086 Sum_probs=202.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
..|..+++.|+..+|.-.|+.|+.-. | ..+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-----P----QHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-----h----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 47999999999999999999999775 3 34567999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
..++..||..|...|.-.+|+.++.+.+...+.......... .-......-......+..-.++|-.+ ....+. .
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLea---a~~~~~-~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEA---ARQLPT-K 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHH---HHhCCC-C
Confidence 999999999999999999999999999876643321100000 00000000000000111222233222 222221 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
....+...||.+|...|+|++|+.+|+.||.. .|.....|..||-.+..-.+..+|+..|.+|+++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------ 493 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------ 493 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence 34567788999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A 577 (729)
.|..+++.++||..++.+|.|++|.++|-.||.+.+...+... .--.+|..|-.++...++.+-+
T Consensus 494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6778899999999999999999999999999999887433221 1123444555555566665543
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.1e-13 Score=127.95 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=214.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHH
Q 004811 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306 (729)
Q Consensus 227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 306 (729)
.|.-++...+ .++|++.|...++. ++....+...||..|.+.|..+.|+.+.+..+... .-....
T Consensus 41 ~GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~~q 105 (389)
T COG2956 41 KGLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTFEQ 105 (389)
T ss_pred hHHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCchHH
Confidence 3444555555 89999998888763 35668888999999999999999999988877653 111233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
...++..||.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++...+.++.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~--- 174 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT--- 174 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---
Confidence 4567899999999999999999999987765 23445688889999999999999999988888776554
Q ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (729)
.....+..+..++..+....+.+.|+..+.+|+.. ++....+-..+|.++...|+|..|++.++.+++.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ----- 243 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ----- 243 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----
Confidence 45677888889999999999999999999999763 5566677788999999999999999999998887
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 004811 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (729)
|......+...|..+|..+|+.++.+..+.++.+.... ..+...++.+-....-.+.|..++.+-+..
T Consensus 244 --n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 244 --NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred --ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 45556778888999999999999999999999887433 223445566666666677787777766665
Q ss_pred HHh
Q 004811 547 YND 549 (729)
Q Consensus 547 ~~~ 549 (729)
.|.
T Consensus 312 ~Pt 314 (389)
T COG2956 312 KPT 314 (389)
T ss_pred CCc
Confidence 443
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=3.4e-14 Score=148.79 Aligned_cols=339 Identities=16% Similarity=0.104 Sum_probs=237.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
+|+.+..+..+|..+...|+ ++.|...+.++....... ..........+.++...|++++|...++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAAR------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 68999999999999988886 899888888887765322 2234556678999999999999999999999875
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
+.+.. ++.. +..+...|++..+.....+++.. ..+.+|....++..+|.++...|++++|+..++++
T Consensus 74 ----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 74 ----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332 2332 55666666665555555555543 23446788888889999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
+++.|... .++..+|.++...|++++|+.++.+++..... ........+..+|.++...|++++|+..|+
T Consensus 141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99887652 46889999999999999999999998764322 122334567789999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004811 457 KALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (729)
+++.... ........ ...+...+...|....+..+ +.+........+. +.........+.++...|+.+
T Consensus 211 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 211 THIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence 9864410 01111111 11223333444543333332 2222221111011 112222346788888999999
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811 535 QAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 535 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
+|...+.......... .+.......+....+.++...|++++|+..+..++.+...+|+.+
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999999887776551 022223345667789999999999999999999999998888765
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=4.3e-14 Score=148.50 Aligned_cols=308 Identities=13% Similarity=0.049 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
+...+..|...+..|+ |++|.+...++-+. .+.|. ..+...+......|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQPV--VNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 3445677777888887 88888666654432 12222 224444666699999999999999998764
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
++.. .......+.++...|++++|+..++++++. .|....++..++.+|...|+|++|+..+.+..+..
T Consensus 149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 2221 122445589999999999999999999888 78889999999999999999999999998887654
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
.............++..+........+-+....+++..- ...+....+...++..+...|+.++|...++++++
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 321100000000112222111122222222222222211 11234456778899999999999999999999987
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 004811 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540 (729)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (729)
. .++ .......+. ...+++++++..+++.++. +|+....+..+|.++...+++++|..+|
T Consensus 292 ~--------~~~-~~l~~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 292 R--------QYD-ERLVLLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred c--------CCC-HHHHHHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 222 222222222 2449999999999998877 4455678899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
+++++..|+. ..+..++.++...|+.++|..+|++++.+.
T Consensus 352 e~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999986554 456689999999999999999999998864
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=1.8e-14 Score=144.85 Aligned_cols=221 Identities=18% Similarity=0.103 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (729)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (729)
.+.++..+.+++...+ ......+..++.+|.+|...|++++|+..|++++++. ++.+ .+++.+|.+
T Consensus 42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~----~a~~~lg~~ 107 (296)
T PRK11189 42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMA----DAYNYLGIY 107 (296)
T ss_pred HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCH----HHHHHHHHH
Confidence 5677777777764321 1124457889999999999999999999999999986 4443 359999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004811 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (729)
+...|++++|+..|++++++ +|....++.++|.++...|++++|+..|++++++.|... . ...
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~ 170 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL 170 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence 99999999999999999999 789999999999999999999999999999999876542 0 111
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhcCCCChhHH
Q 004811 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA---FKTNKGENHPAVA 474 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~ 474 (729)
...+....+++++|+..+.++.... ++.. + ..+.++...|++..+ ..+..+.+. ..+. .+...
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~~ 236 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKL-----DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERLC 236 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhC-----Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHHH
Confidence 1223456789999999997765321 1111 1 134555566766543 233333321 1111 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+|+.+|.++...|++++|+.+|+++++.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999988
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-14 Score=140.97 Aligned_cols=290 Identities=14% Similarity=0.075 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
.....-....|..++...+|.+|+..|..|+++ .|+.+..|.+.+.++...++|++|.-..++.+++.+...
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~ 117 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS 117 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc
Confidence 334445677889999999999999999999999 588899999999999999999999999999988876554
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLAS------------MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
. .+...+.++...++..+|.+.++..- .+.......|....+...-+.|+...|++++|.
T Consensus 118 k--------~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 118 K--------GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred c--------cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 2 35566777777777777766554211 111111122333444445566666666666666
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC---CCChHHHHHHHHHHHHHHHh
Q 004811 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP---GVPPEEIASGLTDVSSIYES 529 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~la~~~~~ 529 (729)
..--..+++ ++....+++..|.++...++.+.|+..|++++.+...... ....+.....+..-|.-.++
T Consensus 190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 665555555 5666666666666666666666666666666665211100 00011122333334444455
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004811 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (729)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (729)
.|++..|.+.|..+|.+.|.. ....+.+|.+++.+....|+..+|+.-.+.++.+ .+.+..++...|.+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c 330 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANC 330 (486)
T ss_pred ccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHH
Confidence 555555555555555554432 2233444555555555555555555555555544 23344455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 004811 610 CVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~ 629 (729)
+..+++|++|.+.|+++++.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555544
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.4e-14 Score=139.95 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=232.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+.-....|..++.... |..|+..|..|++++ |+.+..|.+.+.+++..|+|++|.-..++.+++..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-- 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-- 114 (486)
T ss_pred HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence 345566788889999986 999999999999986 44578899999999999999999999999998862
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhCC--CCchHHHHHHHHHHHHHHhcCHHH
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE 368 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 368 (729)
..+ ..+...+.++..+++..+|...++..- .....+... ..|....+...-+.++...|++++
T Consensus 115 ---~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 115 ---GFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred ---Ccc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 222 236667778877777777776555211 111111111 125556667778899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHH
Q 004811 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND------QDAEVASVDCSIGDTY 442 (729)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~ 442 (729)
|...--..+++.+.+. .+++..|.++...++.+.|+.+|++++.+-+... ..+.....+...|.-.
T Consensus 188 a~~ea~~ilkld~~n~--------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 188 AQSEAIDILKLDATNA--------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred HHHHHHHHHhcccchh--------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 9999888888876653 5688899999999999999999999986533221 1345566677889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (729)
++.|++..|.+.|..+|.+-.. +...++.+|.++|.+...+|+..+|+..++.++.+ ++....++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~ 326 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR 326 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence 9999999999999999998222 13356788999999999999999999999999999 7788999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 523 VSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|.++..+++|++|++.|+++++....
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999998655
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.9e-12 Score=129.71 Aligned_cols=460 Identities=13% Similarity=0.042 Sum_probs=291.1
Q ss_pred cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
........+++|.++......+....|+...++.....++.+.++ |++|+...+.-... .......+.-
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~fEK 85 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFFEK 85 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhHHH
Confidence 333444556667766666666677779999999999999999987 76666433321110 0011122678
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Q 004811 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ------------- 338 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 338 (729)
+.|.++++..++|+..++-+-.. + ..++...|.+++++|+|++|+..|+..++-.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~--------~----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRL--------D----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHcccHHHHHHHHhccccc--------c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99999999999999999822211 1 1236678999999999999999999874321
Q ss_pred ----------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHH
Q 004811 339 ----------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMGLI 401 (729)
Q Consensus 339 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~lg~~ 401 (729)
.+..........+.+++.|.++...|+|.+|++.++++++++....... ......+...++.+
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0111111223567889999999999999999999999988876644321 12345678889999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH----HHHHhcCCCChhHHHH
Q 004811 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD-EAGFAYQKALT----AFKTNKGENHPAVASV 476 (729)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~----~~~~~~~~~~~~~~~~ 476 (729)
+..+|+.++|...|...+.. ...+.+..+.+-++|-.+-....-++ .++..++.... .+.... .+.....+
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~~i 309 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQAI 309 (652)
T ss_pred HHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHH
Confidence 99999999999999877642 33445555656565543332222222 11111111100 000000 02333455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004811 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (729)
+.+.+.+.+..+..+.+.+..... ++..+.....++..-+ .......+.+|.+++...-+-.+. .
T Consensus 310 ~~N~~lL~l~tnk~~q~r~~~a~l--------p~~~p~~~~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p~------~ 374 (652)
T KOG2376|consen 310 YRNNALLALFTNKMDQVRELSASL--------PGMSPESLFPILLQEA-TKVREKKHKKAIELLLQFADGHPE------K 374 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhC--------CccCchHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhccCCc------h
Confidence 666676666666666554443321 2222333333333333 233333677777777665543322 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
-..+...++.+...+|+++.|+..+...+..+......- .+.+.+-..+-..+...++.+-|...+.+|+..+......
T Consensus 375 s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 375 SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 245667789999999999999999985553322211110 0112233334456677777788899999999887765443
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.+.....+..++.+-.+.|+-++|...+++.++. +|...+++..|...|... +.+.|.
T Consensus 454 -s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 454 -SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred -chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 3555557778888888899999999999999976 577888888888877765 556664
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=6.1e-15 Score=148.94 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=205.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
+..|..+++.|+..+|.-.|+.|++ .+|..+.+|..||.+....++-..|+..+++++++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence 5678899999999999999998875 58999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC-CCC-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-GVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
++..||..|...|.-.+|+.++.+-+..-.+... ... ...... ...-......+..-.++|-.+....+..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~--- 427 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK--- 427 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 9999999999999999999999998776311100 000 000000 0000000111222233444443333321
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.-..+...||.+|...|+|++|+.+|+.|+.. .+.....|+.||-.+....+.++|+..|++|+++
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---- 493 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---- 493 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence 12467789999999999999999999999986 2345789999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHhCCHhHHH
Q 004811 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD--VDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~--~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.|..++++++||..|..+|.|++|..+|-.|+.+.++..+..... .-.+|..|-.++...++.+-+.
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999999999999999999999987643311111 2345666666677777766444
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=7.3e-13 Score=125.39 Aligned_cols=402 Identities=18% Similarity=0.105 Sum_probs=243.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHH
Q 004811 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (729)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (729)
+...| |..|+.+++-++..-+ .+....-..+|.|++++|+|++|+..|+.+.... ++ ....+
T Consensus 33 ls~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~ 94 (557)
T KOG3785|consen 33 LSNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELG 94 (557)
T ss_pred Hhccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccc
Confidence 34444 8888888777664321 1122344568999999999999999999887642 11 23358
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
.+||.+++.+|.|.+|.....++-+ .|.....++.++. +.++-++-.. |...+.-..
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~-fh~~LqD~~---------- 151 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILT-FHSSLQDTL---------- 151 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHH-HHHHHhhhH----------
Confidence 8999999999999999887766532 2555556666554 4455333322 332222111
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
.-...|+.+++..-.|.+|++.|.+.+. +.+.....-..+|.||+++.-|+-+.+.+.--+.. .|
T Consensus 152 -EdqLSLAsvhYmR~HYQeAIdvYkrvL~------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~p 216 (557)
T KOG3785|consen 152 -EDQLSLASVHYMRMHYQEAIDVYKRVLQ------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FP 216 (557)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHh------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CC
Confidence 2245677777778889999999988764 56666667778899999999888887777666654 56
Q ss_pred hHHHHHHHHHHHHHHc--CCHHHH----------------HHHHH----------HHHHHHhcCCCCCChHHHHHHHHHH
Q 004811 472 AVASVFVRLADMYNRT--GKLRES----------------KSYCE----------NALRIYEKPVPGVPPEEIASGLTDV 523 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~--g~~~~A----------------~~~~~----------~al~~~~~~~~~~~~~~~~~~~~~l 523 (729)
+...+....+..+++. |+..++ ..+++ -|++.... --..+..+..+|
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~-----L~~~IPEARlNL 291 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS-----LMKHIPEARLNL 291 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH-----HHhhChHhhhhh
Confidence 6666666666655543 322221 11111 12222111 012245677889
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----
Q 004811 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF----- 598 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----- 598 (729)
+..|..+++..+|+.+.+.. .+....-|...|.++...|+--...++++-|-+.+.-.++.....
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDL----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred eeeecccccHHHHHHHHhhc----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999988776531 122233455667777777776666666655555444333221000
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811 599 ------------------------------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 599 ------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
......++|.++...|++.+|.++|-+.- +++-.+.......|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNKILYKSML 434 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-------ChhhhhhHHHHHHH
Confidence 01123455566666666666666554432 22222333345567
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc-cCCC
Q 004811 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND 721 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~ 721 (729)
|.||...+..+-|..++-+. ....+....+..+|......+++=-|. +.|..+-.+||. ..+.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~---------~t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKT---------NTPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPTPENWE 498 (557)
T ss_pred HHHHHhcCCchHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCCccccC
Confidence 77777777777766655432 112233444555677777777777777 788888788887 4443
No 89
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.4e-11 Score=121.25 Aligned_cols=390 Identities=11% Similarity=0.060 Sum_probs=301.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...+...|..-..++++..|...|++||... ...+..|...+.+-.+......|..++.+|+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~------- 136 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI------- 136 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------
Confidence 3346677888888999999999999999874 123445889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 424 (729)
-|..-..|+.....--.+|+...|.+.|++-++..|.. .+|......-.+....+.|...|++-+..
T Consensus 137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~~--- 203 (677)
T KOG1915|consen 137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVLV--- 203 (677)
T ss_pred -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhee---
Confidence 47888889988888889999999999999999887654 45777777888889999999999877542
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
+|. ...|...+..-...|+..-|...|++|++.+.. +......+...|..-..+..++.|.-+|+-|+...
T Consensus 204 ---HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 204 ---HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred ---ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 457788899999999999999999999988543 34455566677777777888888888887777643
Q ss_pred hcC---------------CCC--------------------CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 505 EKP---------------VPG--------------------VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 505 ~~~---------------~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.+. ++. ..+|....+|...-.+-...|+.+.-.+.|++|+.-.|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 321 000 112223456666677777789999999999999986654
Q ss_pred CCCCCCcHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMY---YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (729)
........-.+|..+-.++ ....+.+.+...|+.++++.+ .....++.+|...|....++.+...|...+-.|
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3222222222333332222 356789999999999998743 344567889999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH
Q 004811 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ 706 (729)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 706 (729)
+-. .|..- +......+-.++++++....+|++.++. .|.+..++...|.+-..+|+.+.|. .
T Consensus 431 IG~--------cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaR-a 492 (677)
T KOG1915|consen 431 IGK--------CPKDK-LFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRAR-A 492 (677)
T ss_pred hcc--------CCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHH-H
Confidence 887 44432 4455566778889999999999999965 7999999999999999999999999 9
Q ss_pred HHHHHHhh
Q 004811 707 SLETLLDA 714 (729)
Q Consensus 707 ~l~~al~~ 714 (729)
.|+-|++-
T Consensus 493 ifelAi~q 500 (677)
T KOG1915|consen 493 IFELAISQ 500 (677)
T ss_pred HHHHHhcC
Confidence 99988864
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=2.4e-11 Score=128.62 Aligned_cols=298 Identities=16% Similarity=0.142 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004811 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (729)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (729)
.++.....++...|++++|+.+++...... ......+-..|.++..+|++++|...|+..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 345556888999999999999998765442 123445788999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHH----H--------------------HHHHH
Q 004811 346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLE----E--------------------AADRR 396 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~----~--------------------a~~~~ 396 (729)
+|+....+..+..+..... +.+.-..+|++....+|....+.... . .....
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 7888888888888774333 45666777776666555433221000 0 01112
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC-----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 397 LMGLICETKGDHEAALEHLVLASMTMIAN-----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
.+-.+|....+..-....+.......... ..+....++++.+|..|...|++++|+.+++++++.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---- 223 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---- 223 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence 22222221111111111222111111111 112234678899999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.|..+..|...|.++-..|++.+|...++.|..+ +...-.+-...+..+.+.|+.++|...+..-..
T Consensus 224 ----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 224 ----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999888 222334556677888899999999887654432
Q ss_pred HHHhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811 546 IYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 546 ~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.......+-. ...+.....|.+|.+.|++..|++.|....+.+....+..-.
T Consensus 291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfD 344 (517)
T PF12569_consen 291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFD 344 (517)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 2110101111 123344567999999999999999999999998887665433
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.1e-11 Score=117.44 Aligned_cols=391 Identities=14% Similarity=0.106 Sum_probs=217.4
Q ss_pred ccccccccccCcccccC-CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811 197 MKKRKGKLHKGQDVSEA-GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 197 ~~~~~~~~~a~~~~~~~-~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
+...++|..|+..+.-. ..+..+....-+.+|.+++..|+ |++|+..|.-+..- .+++ +....+||.|+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~ 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACCK 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHHH
Confidence 44455666666222211 22223334566678999999997 88888887766541 2222 45577899999
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
+-+|.|.+|.....++-+.. .....++.++ .+.++-++-... ...++ +..+-...
T Consensus 102 FyLg~Y~eA~~~~~ka~k~p----------L~~RLlfhla---hklndEk~~~~f-h~~Lq-----------D~~EdqLS 156 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPKTP----------LCIRLLFHLA---HKLNDEKRILTF-HSSLQ-----------DTLEDQLS 156 (557)
T ss_pred HHHHHHHHHHHHHhhCCCCh----------HHHHHHHHHH---HHhCcHHHHHHH-HHHHh-----------hhHHHHHh
Confidence 99999999999988875432 2233333333 233443322222 22111 12233445
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004811 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
||.+++..-.|.+|++.|.+++.-.+... ..-..++.+|.++.-|+-+.+.+.--+.. .|+...+.
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~q------~pdStiA~ 222 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLRQ------FPDSTIAK 222 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHHh------CCCcHHHH
Confidence 56666666666777777776665544332 23445666666666666665555433321 22222222
Q ss_pred HHHHHHHHH--cCCHHHH----------------HHHHH----------HHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811 436 CSIGDTYLS--LSRYDEA----------------GFAYQ----------KALTAFKTNKGENHPAVASVFVRLADMYNRT 487 (729)
Q Consensus 436 ~~la~~~~~--~g~~~~A----------------~~~~~----------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 487 (729)
+..+...++ .|+..++ ...++ -|++..... -...+.+..+|...|..+
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L----~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL----MKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH----HhhChHhhhhheeeeccc
Confidence 333332222 1222111 11111 112211111 123456788899999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC----------CCCCCc-
Q 004811 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA----------PGQQST- 556 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~- 556 (729)
++..+|..+++.. .|....-+...|.+....|+--...+.++-|.+.+.-. +|....
T Consensus 299 ~dVqeA~~L~Kdl------------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 299 NDVQEAISLCKDL------------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred ccHHHHHHHHhhc------------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 9999888776542 22333445666777777666544444444443333211 111100
Q ss_pred -------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 004811 557 -------------------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV 611 (729)
Q Consensus 557 -------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 611 (729)
--...++++.++...|++.+|.+.|-+.-.. ...........||.||.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHH
Confidence 0112356788888889999998888654321 11122345667899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004811 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (729)
..+.++-|-.++-+.-. ..+....+..+|..+...+++=-|.+.|...
T Consensus 440 ~nkkP~lAW~~~lk~~t---------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---------PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hcCCchHHHHHHHhcCC---------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999998877755321 3344456677888888888877666666544
No 92
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.3e-09 Score=106.26 Aligned_cols=458 Identities=13% Similarity=0.038 Sum_probs=299.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-ChHHHHHHHHHhcccchhh
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 298 (729)
.+...+++|..++.--+|.+.|...+++|..+.+.+..-. ..-..+...|+.+|.... .+..|...+++++++.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels--- 119 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS--- 119 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence 4567789999998888899999999999999987663221 223567788999999888 7999999999999986
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHHHHHHHH
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 376 (729)
...|......++.|+.++....++..|++.+.-..+.+..+ ......+++.+ +.++....+..+.......+
T Consensus 120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~----~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~ 193 (629)
T KOG2300|consen 120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI----CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRC 193 (629)
T ss_pred --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh----hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 44444455668999999999999999998854333221110 11222333333 33344444555555666665
Q ss_pred HHHHHhcCCCC-CHHHHH-HHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhCCC-------------ChhH--------H
Q 004811 377 LDIHKDNGSPA-SLEEAA-DRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQ-------------DAEV--------A 432 (729)
Q Consensus 377 l~~~~~~~~~~-~~~~a~-~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~--------~ 432 (729)
-.+........ ..+... .+..+-. .|...|+...+...+++..+....... .+.. .
T Consensus 194 ~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqi 273 (629)
T KOG2300|consen 194 GQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQI 273 (629)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhh
Confidence 55554443221 111111 1222322 345567777776666644332221111 1111 1
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 433 SVDCSIGDT--YLSLSRYDEAGFAYQKALTAFKTNKGEN--HP----AVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 433 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.++..+-.+ -...|-+++|.++-++++...++....+ .+ .....+-.+..+-.-.|++.+|++....+.+.+
T Consensus 274 caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~ 353 (629)
T KOG2300|consen 274 CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC 353 (629)
T ss_pred HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111111111 1245778999999999988766654332 11 122345566777788999999999999999887
Q ss_pred hcCCCC--CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 505 EKPVPG--VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 505 ~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
.+.- + --....+.+...+|.....-+.++.|...|..|.+..... ...+.+-.++|..|...|+-+.-.+
T Consensus 354 ~r~p-~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~--- 425 (629)
T KOG2300|consen 354 TRFP-TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK--- 425 (629)
T ss_pred HhCC-chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH---
Confidence 7631 1 1122345667778888888899999999999998876433 2345566789999999887654333
Q ss_pred HHHHHHHHhCCCC------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811 583 NAISKLRAIGERK------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 583 ~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
+++. ++..+ ....+.+++..|...+.++++.+|...+.+.+++..... .+.-..-.+..|+.+..-.|
T Consensus 426 -~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 426 -ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred -HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhc
Confidence 3332 22221 112345677788888999999999999999999853211 12233446678899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC--HhHHH
Q 004811 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR--VRSRK 704 (729)
Q Consensus 657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~--~~~A~ 704 (729)
+..++.....-++++..++ ++.|-.......+-.+|...|+ .+...
T Consensus 500 n~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~ 547 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMEN 547 (629)
T ss_pred chHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 9999999999999998776 6677777777778888999998 44443
No 93
>PLN02789 farnesyltranstransferase
Probab=99.51 E-value=6.5e-12 Score=125.66 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=186.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004811 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEE 515 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (729)
.+-.++...+++++|+..+.+++.+ +|....+|...+.++..+| ++++++..+++++.. .+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npk 104 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPK 104 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCc
Confidence 3334456778999999999999998 8999999999999999998 689999999999988 444
Q ss_pred HHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811 516 IASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 516 ~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
...+|...+.++...|+. ++++.++.+++++.++. ..+|...+.++...|++++|+.++.++++.-
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d----- 172 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEED----- 172 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-----
Confidence 567799999888888874 67899999999887766 5789999999999999999999999999861
Q ss_pred CCChHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHH
Q 004811 594 RKSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAI 662 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 662 (729)
+....+|+..+.++... |.+ ++++.+..+++.+ +|+...+|..++.++.. .++..+|+
T Consensus 173 ---~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 173 ---VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ---CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 22457888888887765 323 5788888899998 89999999999999988 45667788
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC------------------CHhHHHHHHHHHHHhhcc
Q 004811 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS 716 (729)
Q Consensus 663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g------------------~~~~A~~~~l~~al~~~p 716 (729)
..+.+++.. .|....++..|+.+|.... ..++|. ..++.+-+.||
T Consensus 242 ~~~~~~~~~--------~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~ 304 (320)
T PLN02789 242 SVCLEVLSK--------DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP 304 (320)
T ss_pred HHHHHhhcc--------cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence 888887653 5778889999999998643 235677 77777755555
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.48 E-value=4.6e-12 Score=123.90 Aligned_cols=182 Identities=19% Similarity=0.150 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.+.....++.+|..+...|++++|+..|++++...+.. .....+++.+|.++...|++++|+..|+++++..+.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--
Confidence 34457789999999999999999999999998887644 223457889999999999999999999999986432
Q ss_pred CCCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH---H--------------HHH
Q 004811 593 ERKSAFFGVALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHPDTLG---V--------------YSN 647 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--------------~~~ 647 (729)
.+....+++.+|.++... |++++|+..|++++.. +|.... + ...
T Consensus 103 ---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (235)
T TIGR03302 103 ---HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELY 171 (235)
T ss_pred ---CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 223345788899999876 7899999999999987 444322 1 246
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.+|...|++.+|+..|++++..+ +.+|....+++.+|.++...|++++|. .+++.+....|+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~~ 235 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 7889999999999999999999875 556888999999999999999999999 999888877664
No 95
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.47 E-value=6.4e-12 Score=125.40 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+..+...|..|...+++++|.+.|.++.......++....+..+...+.+|... ++++|+.+|++++.++...+ ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence 445666677888889999999999999988888888888888888888888666 99999999999999998775 245
Q ss_pred hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
..+.++..+|.+|... |++++|+.+|++|+++++.. ........++..+|.++...|+|++|+..|++........
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 5688999999999999 99999999999999999873 3566678889999999999999999999999988765433
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 004811 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS 628 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 628 (729)
..........+...+.+++..||+..|...+++.....+.... ......+..|-.++.. ...+..|+.-|.....
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2223334455677888999999999999888887654322222 2234566666666654 3467888888877766
Q ss_pred H
Q 004811 629 I 629 (729)
Q Consensus 629 ~ 629 (729)
+
T Consensus 266 l 266 (282)
T PF14938_consen 266 L 266 (282)
T ss_dssp -
T ss_pred c
Confidence 6
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=2e-10 Score=121.71 Aligned_cols=291 Identities=13% Similarity=0.046 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004811 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
+++..+.++...|++++|+.++.+.... -.+....+...|.++..+|++++|...|...++..|++.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----- 72 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----- 72 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----
Confidence 4666788899999999999999876555 467788899999999999999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhCCC--------------------------ChhHHHHHHHH
Q 004811 390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQ--------------------------DAEVASVDCSI 438 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~l 438 (729)
..+..+..+.... .+.+.-...|.+....+..... ...+..+..++
T Consensus 73 ---~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l 149 (517)
T PF12569_consen 73 ---DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL 149 (517)
T ss_pred ---HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 2244444443222 1344445555543222111000 00011122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh---cC--------CCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTN---KG--------ENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~---~~--------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
-.+|. +..++.-+..-+....... .. ...| ...++++.+|+.|...|++++|+.++++|+..
T Consensus 150 k~Ly~---d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--- 223 (517)
T PF12569_consen 150 KPLYK---DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--- 223 (517)
T ss_pred HHHHc---ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence 22332 2222222111122221111 00 0122 23578899999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
.|..+..|...|.++...|++.+|...++.|..+.... -.+-...+..+++.|+.++|...+.....
T Consensus 224 ------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 224 ------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 56678899999999999999999999999999886554 23445678888999999999887754432
Q ss_pred HHH-HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 587 KLR-AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 587 ~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
--. ...+-......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus 291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 110 0000011123445567799999999999999999999999888654
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=6.5e-09 Score=106.66 Aligned_cols=450 Identities=14% Similarity=0.124 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...|+.....+..+|+ ...-...|.+||..++.. .| ..+|-..-......|-.+-++..|++-|++.+
T Consensus 102 pRIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----qH---~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---- 169 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----QH---DRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---- 169 (835)
T ss_pred CHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----hh---ccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----
Confidence 3456666667777876 788888888888765322 11 11122122222334444556666666555541
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------------HHHhC
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------------------------------KQVLG 343 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------------------~~~~~ 343 (729)
... ......+...+++++|.+.|...+..- +.-.+
T Consensus 170 -~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 170 -EAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred -HHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 111 112223334444454444444332210 00001
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH---------------------------HHHHHH-
Q 004811 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL---------------------------EEAADR- 395 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------------~~a~~~- 395 (729)
.-.......|..||..|...|.+++|...|++++...-...+-... .....-
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 1123466788999999999999999999999987643211110000 000000
Q ss_pred -----------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004811 396 -----------------------------RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446 (729)
Q Consensus 396 -----------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 446 (729)
..+-.+-...|+..+-+..|..|+...............|..+|.+|...|
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 001122223456677777777776544333334455678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC----CCCCChH-----HHH
Q 004811 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP----VPGVPPE-----EIA 517 (729)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~-----~~~ 517 (729)
+.+.|...|+++...--. .-.+.+.+|...|..-....+++.|+.+.++|...-... ..+..+. ...
T Consensus 402 ~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred cHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 999999999999886211 124558899999999999999999999999987653221 0111111 123
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.+|..++.+....|-++.....|++.+++.--. ..+..+.|..+....-++++.+.|++.+.+++ .+
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p 544 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFK------WP 544 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------Cc
Confidence 456666777777777777778888887775443 35567888888888889999999999988753 22
Q ss_pred HHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 004811 598 FFGVALNQM---GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVG--- 670 (729)
Q Consensus 598 ~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~--- 670 (729)
....+|+.. ...-+..-..+.|..+|++|++.+ .|.... ++...|.+-..-|--..|+..|++|-.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 233333322 222223347899999999999863 244433 455556666677877777777777532
Q ss_pred -------------HHHHHcCC--------------CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 671 -------------IREEKLGT--------------ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 671 -------------~~~~~~g~--------------~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
-...++|. .+........+.|.+-...|..+.|. ..|.-.-++.
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~sq~~ 688 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGSQIC 688 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhhhcC
Confidence 12223332 12233444556677777778888877 6666555543
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=3.1e-11 Score=118.06 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.......++.+|..+...|++++|+..|++++... ++++....+++.+|.++...|++++|+..|+++++....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence 44556788999999999999999999999998872 223445578899999999999999999999999998433
Q ss_pred CCCCChHHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 508 VPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
.+....+++.+|.++... |++++|+..|++++...+.... ...++..++...
T Consensus 103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~----------- 162 (235)
T TIGR03302 103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLR----------- 162 (235)
T ss_pred -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHH-----------
Confidence 444456788899999876 8999999999999988765511 011111111111
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
.. .......+|.+|...|++.+|+..|++++..+ +++|....+++.+|.++..+|+++
T Consensus 163 ------~~-----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 163 ------NR-----------LAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred ------HH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHH
Confidence 00 11233467889999999999999999999872 335667789999999999999999
Q ss_pred HHHHHHHHHHH
Q 004811 660 DAIEILEFVVG 670 (729)
Q Consensus 660 ~A~~~~~~al~ 670 (729)
+|..+++....
T Consensus 221 ~A~~~~~~l~~ 231 (235)
T TIGR03302 221 LAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHh
Confidence 99998887654
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=5e-09 Score=107.48 Aligned_cols=329 Identities=14% Similarity=0.116 Sum_probs=220.3
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004811 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (729)
+|.....|..... +..|+..+-+..|.+|+...........+ ...|..+|.+|...|+.+.|...|+++... ..
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y 418 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY 418 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence 5666666665544 44688888899999888754333323333 356889999999999999999999998653 12
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCCh------hHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHP------AVASVFVRLADMYNRTGKLRESKS 495 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~ 495 (729)
+...+.+.+|+..|..-....+++.|+.+.++|...-.. .....+| ....+|..++.+....|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 234566889999999999999999999999988765221 1111122 234567777888888899999999
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHHHHHHcC
Q 004811 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA---QMGVMYYMLG 572 (729)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~la~~~~~~g 572 (729)
.|++.+++.-. ...+..+.|..+....-+++|.+.|++.+.+++- +....+|. .....-+..-
T Consensus 499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-----p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-----PNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC-----ccHHHHHHHHHHHHHHHhcCC
Confidence 99999888322 3456778888888888999999999998887642 22233333 2222333334
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------HHHHhcCC
Q 004811 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS----------------ILEQECGP 636 (729)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~~~~~~~ 636 (729)
..+.|..+|++|++.++ +...-.++...+.+-...|-...|+..|++|-. ....++|+
T Consensus 565 klEraRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 78899999999998543 222233445555555566666666666666532 12222331
Q ss_pred --------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCHh
Q 004811 637 --------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 637 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La~~~~~~g~~~ 701 (729)
.+..........|.+-...|..+.|...|.-+-+++ +|. ....|...-..-.+.|+-+
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~-------dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC-------DPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC-------CCcCChHHHHHHHHHHHhcCCHH
Confidence 123334456677888889999999999999888875 333 3455666677778889844
Q ss_pred HHHHHHH
Q 004811 702 SRKAQSL 708 (729)
Q Consensus 702 ~A~~~~l 708 (729)
.-. +.|
T Consensus 712 T~k-eML 717 (835)
T KOG2047|consen 712 TYK-EML 717 (835)
T ss_pred HHH-HHH
Confidence 433 444
No 100
>PLN02789 farnesyltranstransferase
Probab=99.41 E-value=2.3e-10 Score=114.56 Aligned_cols=209 Identities=10% Similarity=-0.038 Sum_probs=170.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
++...+.+++|+..+.+++.+ .|....+|...+.++..+| ++++++..+.+++.. +|....+|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~ 111 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH 111 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence 344557788999999998864 6777889999999999998 689999999999998 7888899999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcH
Q 004811 480 LADMYNRTGKL--RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557 (729)
Q Consensus 480 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 557 (729)
.+.++...|+. ++++.++.+++++ ++....+|...+.++...|++++|++++.++++..+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~---------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------- 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSL---------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------- 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------
Confidence 99999999874 7789999999988 55567899999999999999999999999999987665
Q ss_pred HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004811 558 AGIEAQMGVMYYML---GNY----SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEA 626 (729)
Q Consensus 558 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 626 (729)
..+|+..+.++... |.+ ++++.+..+++.+. +....+|+.++.++.. .++..+|...+.++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 46788888887765 333 46777888888762 2235688888888877 45567788888887
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811 627 RSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (729)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (729)
+.. .+....++..|+.+|...
T Consensus 248 ~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcc--------cCCcHHHHHHHHHHHHhh
Confidence 775 677778899999999863
No 101
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.9e-07 Score=93.07 Aligned_cols=464 Identities=12% Similarity=0.066 Sum_probs=293.6
Q ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHH-HcCChHHHHHHHHHhcccch
Q 004811 220 LGPLLLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 296 (729)
.+.+++.+|..+...+ + ..++|.+++..... ..+..-.+.+...+|.+++ ...+++.|...+++|..+..
T Consensus 6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~ 78 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK 78 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4567889998888777 4 56666665544432 2222344667777887765 57889999999999998764
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811 297 IEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQ 374 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (729)
..+.- ....+.+...|+.+|.... .+..|...+++++++.+. .| .....++.|+.++....++..|.+.+.
T Consensus 79 ~ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~-----~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 79 SIPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS-----VPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred ccccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 33222 2346677888999998887 889999999999999654 23 234567889999999999999998843
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH---H-HHHHHHHH-HHHHcCC
Q 004811 375 MALDIHKDNGSPASLEEAADRRLM--GLICETKGDHEAALEHLVLASMTMIANDQDAEV---A-SVDCSIGD-TYLSLSR 447 (729)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~-~~~~~la~-~~~~~g~ 447 (729)
-.... .+........+++.+ +.+.....+..+.......+-.+......++.. . ..|..+-. .|...|+
T Consensus 152 vga~s----Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq 227 (629)
T KOG2300|consen 152 VGAES----ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQ 227 (629)
T ss_pred ccccc----cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 33222 222111222233333 334444445555555555554444433333322 1 12223333 3445677
Q ss_pred HHHHHHHHHHHHHHHHHhc-----------CCCChhHH--------HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhc
Q 004811 448 YDEAGFAYQKALTAFKTNK-----------GENHPAVA--------SVFVRLADM--YNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~-----------~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
...+...+++.-....... +.+.+... .++..+-.+ -...|-+++|.++-++++...++
T Consensus 228 ~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ek 307 (629)
T KOG2300|consen 228 VRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEK 307 (629)
T ss_pred hhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 7777766664433322221 11112111 111111111 12457788999999999888766
Q ss_pred CCCCC-ChH----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHH
Q 004811 507 PVPGV-PPE----EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSY 578 (729)
Q Consensus 507 ~~~~~-~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~ 578 (729)
....+ ..+ .....+-.++.+-.-.|++.+|++....+.+.+...++.. ...+.+...+|......+.++.|.
T Consensus 308 lkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe 387 (629)
T KOG2300|consen 308 LKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAE 387 (629)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHH
Confidence 42111 111 1223455667777889999999999999999988876532 234566777888888899999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--h-----hHHHHHHHHHHH
Q 004811 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH--P-----DTLGVYSNLAGT 651 (729)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~-----~~~~~~~~la~~ 651 (729)
..|..|.+.... ....+.+-.++|..|.+.|+-+.-. ++++.. ++.+ + ....+++..|..
T Consensus 388 ~hf~~a~k~t~~-----~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 388 FHFIEATKLTES-----IDLQAFCNLNLAISYLRIGDAEDLY----KALDLI----GPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred HHHHHHHHhhhH-----HHHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----CCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999887543 2335677788999999987654332 233221 2111 1 123466777888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...++++.||...+.+.+++.... ..+.-....+..|+.+....|+..++. +...-++++...
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~-nmvrpamqlAkK 517 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR-NMVRPAMQLAKK 517 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH-hccchHHHHHhc
Confidence 889999999999999999875211 112233455677899999999999999 888877776543
No 102
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.39 E-value=3.3e-11 Score=120.26 Aligned_cols=231 Identities=17% Similarity=0.178 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
+..+...|.+|...+++++|...|.++..+..+. .+....+..+...+.+|... ++++|+.+|++|+.++... |.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-Cc
Confidence 4445555777888899999999999999988773 34566677888888888766 9999999999999999887 87
Q ss_pred CCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 554 QSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
....+.++..+|.+|... |++++|+.+|++|++++...+. +.....++..+|.++...|+|++|++.|++.......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 788889999999999999 9999999999999999988663 3456778899999999999999999999998775322
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHH
Q 004811 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET 710 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~ 710 (729)
... ........++..+.|+...|+...|...+++...... +-.+..-......|...+.. ...+.+++ ..|..
T Consensus 188 ~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~~D~e~f~~av-~~~d~ 262 (282)
T PF14938_consen 188 NNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEEGDVEAFTEAV-AEYDS 262 (282)
T ss_dssp HCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHTT-CCCHHHHC-HHHTT
T ss_pred ccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHhCCHHHHHHHH-HHHcc
Confidence 111 0223344667888899999999999999988875421 11123334445555555442 34555666 66655
Q ss_pred HHhhcc
Q 004811 711 LLDANS 716 (729)
Q Consensus 711 al~~~p 716 (729)
.-.+||
T Consensus 263 ~~~ld~ 268 (282)
T PF14938_consen 263 ISRLDN 268 (282)
T ss_dssp SS---H
T ss_pred cCccHH
Confidence 555544
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.1e-09 Score=100.06 Aligned_cols=225 Identities=17% Similarity=0.165 Sum_probs=170.1
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
.+..+|..|++++..-.+.. + .....+..||.||+...+|..|..+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~-----p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERS-----P----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcC-----c----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 66778999999888766554 1 12335888999999999999999999998887 6888888899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004811 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
.|..+++.+.+..|+.......+. +. ....++..-+.+.+..+++..+....++. .....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~-~~-------L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN-PA-------LHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC-HH-------HHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence 999999999999999887665542 11 11234556677777888888887776543 112456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-----
Q 004811 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG----- 510 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 510 (729)
.+.|.+.++.|+++.|++-|+.+++. ....+..-++++.++++.++++.|+++..+.++.--+..|.
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 44455667899999999999999999998887754332110
Q ss_pred ----C-----------ChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004811 511 ----V-----------PPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (729)
Q Consensus 511 ----~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (729)
. .......+++..+.++++.++++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 0 012245667777888999999988876653
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.9e-08 Score=98.20 Aligned_cols=303 Identities=15% Similarity=0.099 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004811 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
....-|..-...|+|.+|+....++-+..+.. ..++..-+.....+|+++.|-.++.++-+. . ....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--------~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~--~~~~ 152 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--------VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---A--GDDT 152 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--------HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---C--CCch
Confidence 34445556667899999999988865544322 345677788889999999999999887532 1 1223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
......++.+....|+++.|.....++++. .|....++.....+|...|++.+...++.+..+. +.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka------~~ 218 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA------GL 218 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc------cC
Confidence 456677899999999999999999999998 7888899999999999999999998888776554 11
Q ss_pred ChHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 512 PPEEIASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 512 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
-......-+-+.+.. +....+-..+.. +....+-.+...... ..+...++.-+...|++++|.+..+++++...
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 122222222222222 111122222221 122222222221122 24455678889999999999999999987521
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
+ ......++ ...-+++..=++..++.++. +|+....+..||.+|.+.+.|.+|..+|+.++
T Consensus 295 ---D------~~L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 295 ---D------PRLCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred ---C------hhHHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 11111111 33557778878888888877 88888899999999999999999999999998
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
... .....+..+|.++.++|+..+|. +.++.++.+
T Consensus 356 ~~~---------~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~~ 390 (400)
T COG3071 356 KLR---------PSASDYAELADALDQLGEPEEAE-QVRREALLL 390 (400)
T ss_pred hcC---------CChhhHHHHHHHHHHcCChHHHH-HHHHHHHHH
Confidence 752 33566888999999999999999 999988854
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.2e-07 Score=99.79 Aligned_cols=423 Identities=17% Similarity=0.131 Sum_probs=234.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 004811 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD 346 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 346 (729)
.|-..|...|.|++|.++.+.--++. .-..|++.|..+...++.+.|+++|+++-.....+ +.+ +
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiH-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~ 898 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIH-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-Y 898 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhcccee-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-C
Confidence 35556777777777777665433322 12358899999999999999999999863221111 111 1
Q ss_pred c----------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHHH
Q 004811 347 P----------RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-------------ASLEEAADRRLMGLICE 403 (729)
Q Consensus 347 ~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~a~~~~~lg~~~~ 403 (729)
| .....|...|..+...|+.+.|+.+|..|-+.+....-. .....-.+.+.||+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 2 122467778888999999999999998886654321100 00001246788999999
Q ss_pred HhCCHHHHHHHHHHH------HHHHHhCCCChhHHHH--------HHHHHHHHHHcC-CHHHHHHHHHHH------HHHH
Q 004811 404 TKGDHEAALEHLVLA------SMTMIANDQDAEVASV--------DCSIGDTYLSLS-RYDEAGFAYQKA------LTAF 462 (729)
Q Consensus 404 ~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~--------~~~la~~~~~~g-~~~~A~~~~~~a------l~~~ 462 (729)
..|++.+|+.+|.+| +++.+.++.....+.. +...|..|...| .++.|..+|.+| ++++
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 999999999998776 3444444332222211 123345556665 666676666543 3322
Q ss_pred ------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHhcCC------------CC--
Q 004811 463 ------------KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC------ENALRIYEKPV------------PG-- 510 (729)
Q Consensus 463 ------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~-- 510 (729)
.+-. +....+..+..-+..+....+|++|..++ +.|+.++.... +.
T Consensus 1059 F~tqQf~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HhhcccHHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcC
Confidence 1111 12233556677788888999999998765 45555543321 11
Q ss_pred --CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-----CCCCC---------cHHHHHHHHHHHHHHcCCH
Q 004811 511 --VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA-----PGQQS---------TVAGIEAQMGVMYYMLGNY 574 (729)
Q Consensus 511 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~---------~~~~~~~~la~~~~~~g~~ 574 (729)
.+......++..+|.++.++|.|..|-+-|.+|-...... .|+.. ..-.+ +-++.-|+..-+|
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi-YImAANyLQtlDW 1215 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI-YIMAANYLQTLDW 1215 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee-eeehhhhhhhccc
Confidence 1223456788899999999999999998888764433211 02111 00111 1233344444444
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HH
Q 004811 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV--------QRYSINEAVELFEEARSILEQECGPYHPDTL--GV 644 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~ 644 (729)
..--+.++..+..+.+ ..++-.||..|. ...+|++|.-.+++|.+-+.+....++.... ..
T Consensus 1216 q~~pq~mK~I~tFYTK---------gqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~L 1286 (1416)
T KOG3617|consen 1216 QDNPQTMKDIETFYTK---------GQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDAL 1286 (1416)
T ss_pred ccChHHHhhhHhhhhc---------chhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 4333333333333221 122233333322 2345666666666665544433221111111 11
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 645 YSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 645 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...++.+-.. +--.+++..-..++-.+.++-.-++.-.....+..|.+.+....+|..|. ..++.+-...|.
T Consensus 1287 q~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1287 QEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence 1122222111 11112333333344333332211222234566777888899999999999 999999888887
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.32 E-value=1.8e-10 Score=127.33 Aligned_cols=285 Identities=12% Similarity=0.100 Sum_probs=194.3
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 423 (729)
.-+|....++..|...+...+++++|+..++.+++..|... ..++.+|.++...+++..+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv--------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL--------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh---------
Confidence 34688999999999999999999999999999999887765 4588999999999986666543
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.++.......++ .++.++...+.. .+..-.+++.+|.||.++|++++|...|++++++
T Consensus 88 -------------~~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 88 -------------NLIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred -------------hhhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 233444444555 444444443332 3555668899999999999999999999999988
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
++..+.+++++|..|... ++++|+.++.+|+..+-+. ........+|.. .+.....+++.=..+.++
T Consensus 146 ---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~k 212 (906)
T PRK14720 146 ---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIERK 212 (906)
T ss_pred ---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHHH
Confidence 456678899999999988 9999999999998875543 111122222211 122222233322222222
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
.+.. .+ .......+.-+=..|...++|++++.+++.++++ +|....+...|+.+|. +.|.. ..
T Consensus 213 i~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~ 275 (906)
T PRK14720 213 VLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HS 275 (906)
T ss_pred HHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cc
Confidence 2221 11 1123455666678888899999999999999999 8888889999999998 55544 55
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.|+.++++. .+-.....+..++ ..|++.+..++.
T Consensus 276 ~~ee~l~~s-------------------~l~~~~~~~~~~i-~~fek~i~f~~G 309 (906)
T PRK14720 276 LLEDYLKMS-------------------DIGNNRKPVKDCI-ADFEKNIVFDTG 309 (906)
T ss_pred hHHHHHHHh-------------------ccccCCccHHHHH-HHHHHHeeecCC
Confidence 666666542 1111123456666 777777776665
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=7e-09 Score=101.17 Aligned_cols=301 Identities=17% Similarity=0.077 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcccc
Q 004811 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (729)
.....|-.-+..|+ |.+|.....++-+. .+.| ..+|..-+.+...+|+++.|-.++.++-+.. .+
T Consensus 86 ~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~ 150 (400)
T COG3071 86 KALNEGLLKLFEGD-FQQAEKLLRRNAEH-------GEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD 150 (400)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------Ccch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence 34455666666776 77777666664432 2223 4557777888899999999999999998873 11
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+ ...+....+.+....|+++.|..-..++++. .|....++.....+|...|+|.....++.+.-+..--
T Consensus 151 ~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 151 D---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1 3345888999999999999999999999988 6888899999999999999999998887765443211
Q ss_pred cCCCCCHHHHHHHHHHHHH--HHHhCCHHHHH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 383 NGSPASLEEAADRRLMGLI--CETKGDHEAAL---EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~lg~~--~~~~g~~~~A~---~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (729)
. .....-+...+.. .....+-..+. .+++.. -.....+|. +...++.-+..+|+.++|.+..++
T Consensus 220 ~-----~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p~---l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 220 S-----DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDPE---LVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred C-----hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcChh---HHHHHHHHHHHcCChHHHHHHHHH
Confidence 1 1111122222211 11222222222 222211 111222333 345567788999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004811 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (729)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (729)
+++... ++. ....++ ...-+++..=++..++.++. ++.....+..||.++.+.+.|.+|.
T Consensus 289 ~Lk~~~------D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 289 ALKRQW------DPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHHhcc------Chh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHHH
Confidence 988611 222 111111 23457777777777887777 3333478999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
.+|+.++...+.. ..+..+|.++.++|+..+|...+++++.+.
T Consensus 349 ~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 349 EALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999998876543 567889999999999999999999998554
No 108
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.30 E-value=3.5e-06 Score=93.87 Aligned_cols=476 Identities=13% Similarity=0.043 Sum_probs=291.8
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+.+.+++|..++..-+|++.|..++++++.+.++. .-. .....+...++.++.+.+... |...++++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence 4677889999999988888999999999999987551 111 223455667799999888877 99999999987632
Q ss_pred ccccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004811 299 EGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-VGETCRYLAEAHVQALQFSEAQKFCQM 375 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (729)
..+.. +...+.+ ...+...+++..|+..++......... .++. ...+....+.++...+..+++++.+++
T Consensus 132 --~~~~~--w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 132 --YGHSA--WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred --cCchh--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 11111 1112222 223333379999999999998886531 1222 233444456667777888899999998
Q ss_pred HHHHHHhc--CCCCCHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHhCCCCh----------------------
Q 004811 376 ALDIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA---------------------- 429 (729)
Q Consensus 376 al~~~~~~--~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------- 429 (729)
+....... .+........++..+-. ++...|++..+...+.+.-..+......+
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 87766543 11113333344444443 45667887777777665543333221110
Q ss_pred --------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCh---------------hHHHHH
Q 004811 430 --------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENHP---------------AVASVF 477 (729)
Q Consensus 430 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~ 477 (729)
..+-+|..-|......+..++|.+++.++++..++... ...+ ....++
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 11233444466677778888999999999999887661 1000 122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC----C
Q 004811 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG----Q 553 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~ 553 (729)
..++.+.+-.+++..|...+..+.....+.............++..|..+...|+.+.|+.+|.+..-....... .
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 566777788999999999999988886653211123345677888999999999999999999865533322211 1
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Q 004811 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL 630 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~ 630 (729)
......+..++..++...+.-.....-+...++..... ..........++..+-..+. ..-...++...+.++++.+
T Consensus 445 ~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~ 524 (608)
T PF10345_consen 445 RELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMA 524 (608)
T ss_pred hHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Confidence 12223334566667766555433222233333322222 11112222222222222221 2224458999999999988
Q ss_pred -HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH---HHHHHHHHHHHhCCHhHHHHH
Q 004811 631 -EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD---EKRRLAELLKEAGRVRSRKAQ 706 (729)
Q Consensus 631 -~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~---~~~~La~~~~~~g~~~~A~~~ 706 (729)
..... ..-..-++..++..+. .|+..+.......+..+..+. ++..+... +-..++..+...|+.++|. .
T Consensus 525 ~~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~ 598 (608)
T PF10345_consen 525 NNKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-E 598 (608)
T ss_pred HHhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-H
Confidence 44322 2333335556666666 899999888888888877654 11222222 3346677789999999998 7
Q ss_pred HHHHHH
Q 004811 707 SLETLL 712 (729)
Q Consensus 707 ~l~~al 712 (729)
...+.-
T Consensus 599 ~~~~~~ 604 (608)
T PF10345_consen 599 ARQQLD 604 (608)
T ss_pred HHHHHH
Confidence 666554
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=6.7e-09 Score=96.75 Aligned_cols=393 Identities=13% Similarity=-0.019 Sum_probs=231.2
Q ss_pred ccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc
Q 004811 199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL 278 (729)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 278 (729)
...+|..+|+.+.......|.....+-.+|.+|+...+ |..|.++|++.-..+ |.........+..+++.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHHh
Confidence 34455566655556666677777777778888888776 777777777766554 33344445557777777
Q ss_pred CChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004811 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358 (729)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 358 (729)
+.+..|+.......... ...-.++..-+.+.+..+++..+....++. . ....+....+.|.
T Consensus 92 ~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~Ad~~in~gC 152 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENEADGQINLGC 152 (459)
T ss_pred cccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCccchhccchh
Confidence 77777777776654321 111222333445555556665555444331 0 1245667788899
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-------------
Q 004811 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN------------- 425 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------- 425 (729)
+.++.|+++.|++-|+.+++...-.. ..-++++.++++.++++.|+++....+..-...
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 99999999999999999988764432 236788999999999999999887765432111
Q ss_pred -----CCC-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 426 -----DQD-----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495 (729)
Q Consensus 426 -----~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 495 (729)
++. .....+++..+.++++.++++.|.+.+...--..+ +...+..+.+++..-. .+++.+...
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE------~elDPvTLHN~Al~n~-~~~p~~g~~ 297 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE------EELDPVTLHNQALMNM-DARPTEGFE 297 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc------ccCCchhhhHHHHhcc-cCCccccHH
Confidence 000 12334556667788888888888775543221111 2233456666665433 355666666
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHH-HHcCC
Q 004811 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMY-YMLGN 573 (729)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~-~~~g~ 573 (729)
-+.-.+.+. |.-..++.++-.+|++..-|+-|...+- ..+.... .+...++.+-..+ ..+-.
T Consensus 298 KLqFLL~~n---------PfP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yly~LLdaLIt~qT~ 361 (459)
T KOG4340|consen 298 KLQFLLQQN---------PFPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYLYDLLDALITCQTA 361 (459)
T ss_pred HHHHHHhcC---------CCChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHHHHHHHHHHhCCCC
Confidence 555555551 1223456667777777665655554432 2211111 1122223333322 33456
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQM-GLACVQR-----YSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
.++|.+-+......+.. -+..+ +.+.... .....|++-|++++++ ...++..
T Consensus 362 pEea~KKL~~La~~l~~-----------kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----------YLPVlMa 419 (459)
T KOG4340|consen 362 PEEAFKKLDGLAGMLTE-----------KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----------YLPVLMA 419 (459)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 66666655544332111 11111 1111111 1234566667777665 2336678
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
.|++|+...+|.-+.+.|+..++.+.
T Consensus 420 ~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 420 QAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHhhccccccHHHHHHHHHHHhhhc
Confidence 89999999999999999999998873
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=1.1e-10 Score=103.33 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004811 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (729)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (729)
..+|++++++.+.. +..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 45678888876643 456899999999999999999999876 233568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (729)
++|+..|++++.+ +|....+++++|.++..+|++++|+..|++++.+ .|+....+..++.+...
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 9999999999998 8999999999999999999999999999999987 57777777777776554
Q ss_pred h
Q 004811 697 A 697 (729)
Q Consensus 697 ~ 697 (729)
.
T Consensus 139 l 139 (144)
T PRK15359 139 V 139 (144)
T ss_pred H
Confidence 3
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.24 E-value=1.1e-10 Score=103.23 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
..+|++++++-+ ..+..+|.++...|++++|+.+|++++.+ +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~~p-----------~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSVDP-----------ETVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHcCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 456777777521 13557899999999999999999999998 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++|+..|++++.+ +|....+++++|.++...|++++|+ ..|+.++.++|+
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~ 124 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 99999999999986 6889999999999999999999999 999999999998
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.6e-07 Score=99.00 Aligned_cols=341 Identities=16% Similarity=0.126 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 004811 222 PLLLKQARELISSGDNPQKALELAL--------RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~--------~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (729)
.+|-.+|....+..+ .+-|.-+.- +|++..++. ++.. -...|.+...+|-.++|..+|++.-+
T Consensus 758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~----~~e~----eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQN----GEED----EAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhC----Ccch----hhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666766666665 666655431 233322222 1111 12245566778888999998888653
Q ss_pred cchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004811 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (729)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (729)
. -.|-..|...|.+++|.+..+.- +.-.....|++.|..+...++.+.|+++|
T Consensus 829 ~-----------------DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 829 Y-----------------DLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred H-----------------HHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3 23556788888888887765431 12345678899999999999999999999
Q ss_pred HHHHHH----HHhcCCC-CCH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811 374 QMALDI----HKDNGSP-ASL-------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 374 ~~al~~----~~~~~~~-~~~-------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
+++-.. .+-..+. ..+ .....|...|......|+.+.|+.+|..|.. |+.+-.+
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------------~fs~VrI 947 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------------YFSMVRI 947 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------hhhheee
Confidence 876221 1110000 000 0023466778888888888888888877642 3334444
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHhcCCCCCChHH
Q 004811 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL------RIYEKPVPGVPPEE 515 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~ 515 (729)
.+.+|+.++|....++. ....+.+.||+.|...|++.+|+.+|.+|- +++++.. -...
T Consensus 948 ~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~ 1011 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR 1011 (1416)
T ss_pred EeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH
Confidence 44455555544332221 122344556666666666666666655443 2222210 0000
Q ss_pred HHH--------HHHHHHHHHHhcc-hHHHHHHHHHH------------------HHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004811 516 IAS--------GLTDVSSIYESMN-ELEQAIKLLQK------------------ALKIYNDAPGQQSTVAGIEAQMGVMY 568 (729)
Q Consensus 516 ~~~--------~~~~la~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~la~~~ 568 (729)
.+. -+...|..|...| ..+.|..+|.+ ++++........ .-+.++..-+..+
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~-sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG-SDPKLLRRCADFF 1090 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC-CCHHHHHHHHHHH
Confidence 000 0111222233333 34444443332 344444332222 2245667778888
Q ss_pred HHcCCHHHHHHHHH------HHHHHHHHhC-----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 569 YMLGNYSDSYDSFK------NAISKLRAIG-----------------ERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (729)
Q Consensus 569 ~~~g~~~~A~~~~~------~al~~~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (729)
....+|++|..++- .|+.++...+ .........++..+|.++.++|.|..|.+-|.+
T Consensus 1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 88889999877654 4554433211 111122345788999999999999999999888
Q ss_pred HHHH
Q 004811 626 ARSI 629 (729)
Q Consensus 626 al~~ 629 (729)
|-..
T Consensus 1171 AGdK 1174 (1416)
T KOG3617|consen 1171 AGDK 1174 (1416)
T ss_pred hhhH
Confidence 7544
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=8.7e-09 Score=94.18 Aligned_cols=209 Identities=14% Similarity=0.094 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
+.++-+++....+.........++...++-.+..+....|+.+-|..++++.... .|....+...-|..+..
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEA 98 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHH
Confidence 4556666665555443333345566667777888888999999999998887666 46666777788999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
.|++++|+++|+..++- +|....++-..-.+...+|+.-+|++.+..-++.+... ..+|..++.
T Consensus 99 ~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLae 162 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELAE 162 (289)
T ss_pred hhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHHH
Confidence 99999999999998765 34445566666677788999999999999999988766 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
+|+..|+|++|.-++++.+=+ .|+....+..+|.+++-+| ++.-|.++|.+++++ .|....
T Consensus 163 iY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~r 226 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLR 226 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHH
Confidence 999999999999999998865 3445677888888888776 678899999999999 777777
Q ss_pred HHHHHHHHHHHc
Q 004811 644 VYSNLAGTYDAI 655 (729)
Q Consensus 644 ~~~~la~~~~~~ 655 (729)
+++.+-.+....
T Consensus 227 al~GI~lc~~~l 238 (289)
T KOG3060|consen 227 ALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHH
Confidence 777666555433
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.20 E-value=1.3e-09 Score=119.96 Aligned_cols=156 Identities=11% Similarity=0.003 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
+....+...+-+++.+.+. .+....++.+||.+....|.+++|..+++.++++.|+. ..+...++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~ 129 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRG 129 (694)
T ss_pred hhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHH
Confidence 3333444444455555433 34457889999999999999999999999999998877 5788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
+.+.+++++|+..+++++.. .+..+.+++.+|.++.+.|++++|+.+|++++.- +|+...++..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 99999999999999999886 2335788999999999999999999999999986 8888899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999874
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.20 E-value=1.4e-09 Score=101.65 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=107.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.++.++++..+++++.. .+.....|..+|.+|...|++++|+..|++++.+ .|+...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678888888888875 2234678999999999999999999999999999 8889999999999
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 651 TY-DAIGR--LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 651 ~~-~~~g~--~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++ ...|+ +++|...++++++. +|....+++.||..+...|++++|+ ..++++++++|.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~ 176 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP 176 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 74 67787 59999999999987 7888899999999999999999999 999999999886
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=5.1e-09 Score=109.38 Aligned_cols=253 Identities=17% Similarity=0.142 Sum_probs=195.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC----------CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004811 236 DNPQKALELALRAAKSFEIGAN----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 236 ~~~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
+-.+.+...-+.+.+.++.... ...-|.....-..++..+...|-...|+..|++.-
T Consensus 359 RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle------------- 425 (777)
T KOG1128|consen 359 RTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE------------- 425 (777)
T ss_pred cchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------
Confidence 3355666555555554433210 11124456667788999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.|.....||...|+..+|.....+-++. +..+..|..+|.+.....-|++|.++.+..-
T Consensus 426 ----mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d~s~yEkawElsn~~s-------- 484 (777)
T KOG1128|consen 426 ----MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHDPSLYEKAWELSNYIS-------- 484 (777)
T ss_pred ----HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccChHHHHHHHHHhhhhh--------
Confidence 3677889999999999999888776653 4555667777776655544555544443322
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
+.+...+|......++|.++..+++..+.+ .+.....|+.+|.+..+.+++..|..+|..++.+
T Consensus 485 ------arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---- 548 (777)
T KOG1128|consen 485 ------ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---- 548 (777)
T ss_pred ------HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----
Confidence 234667777777899999999999988764 6777789999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.|+...+|++++..|...++-.+|...+.+|++.- .....+|.|.-.+....|.+++|++.|.+.+.
T Consensus 549 ----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---------~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 ----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---------CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999983 22355677888888999999999999999998
Q ss_pred HHHhCC
Q 004811 546 IYNDAP 551 (729)
Q Consensus 546 ~~~~~~ 551 (729)
+.....
T Consensus 616 ~~~~~~ 621 (777)
T KOG1128|consen 616 LRKKYK 621 (777)
T ss_pred hhhhcc
Confidence 877654
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.19 E-value=2.9e-09 Score=117.88 Aligned_cols=236 Identities=13% Similarity=0.030 Sum_probs=171.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
++.-.|....++..++..+...++ +++|+..++.+++.. |+....++.+|.++++.+++.++... .++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 445678899999999999989987 999999999888764 55677889999999999999988877 666
Q ss_pred ccchhhccccch----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004811 293 EIPVIEEGQEHA----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (729)
Q Consensus 293 ~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (729)
.+........-. ...-.+++.+|.||..+|++++|...|++++++ +|..+.++.++|..|..
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE 162 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence 664221100000 001146899999999999999999999999999 79999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
. ++++|+.++.+|+...-........ -. .....+...-.+++.-....++.+. .-........+.-+=..|
T Consensus 163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~e--~W~k~~~~~~~d~d~f~~i~~ki~~----~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFIKKKQYVGI--EE--IWSKLVHYNSDDFDFFLRIERKVLG----HREFTRLVGLLEDLYEPY 233 (906)
T ss_pred h-hHHHHHHHHHHHHHHHHhhhcchHH--HH--HHHHHHhcCcccchHHHHHHHHHHh----hhccchhHHHHHHHHHHH
Confidence 9 9999999999999876443321111 00 1111222222333333333332221 111334455566667889
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
...++|++++.+++.++++ .+....+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH
Confidence 9999999999999999998 7778888999999887
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.6e-09 Score=119.31 Aligned_cols=158 Identities=14% Similarity=0.091 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
+....+...+-+++.+..+.+ ....++..||.+....|.+++|..+++.++++. +....++..++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L 130 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRRYP----HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV 130 (694)
T ss_pred hhhcchHhhHHHHHHHHHhcc----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence 333344444445555544432 225788999999999999999999999999973 33567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (729)
.+.+++++|+..+++++.. .|+...+++.+|.++.++|++++|+.+|++++.- +|+...++..+
T Consensus 131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~ 194 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGW 194 (694)
T ss_pred HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHH
Confidence 9999999999999999999 8999999999999999999999999999999963 78999999999
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 691 AELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|.++...|+.++|. ..|+++++...+
T Consensus 195 a~~l~~~G~~~~A~-~~~~~a~~~~~~ 220 (694)
T PRK15179 195 AQSLTRRGALWRAR-DVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence 99999999999999 999999988765
No 119
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.16 E-value=2.1e-05 Score=87.76 Aligned_cols=423 Identities=14% Similarity=0.031 Sum_probs=263.8
Q ss_pred hHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004811 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA-MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (729)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (729)
...|+.+++-+++-. .-.|...+.+++.+|.++. ...+++.|..++.+++.+.++ ..-......+...++.+
T Consensus 37 I~~ai~CL~~~~~~~-----~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i 109 (608)
T PF10345_consen 37 IATAIKCLEAVLKQF-----KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARI 109 (608)
T ss_pred HHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH
Confidence 345777777777522 3344566778999999988 789999999999999988754 11112234566778899
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM-GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
+.+.+... |...++++++........ . ...++..+ ...+...+++..|++.++.........++......+....
T Consensus 110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~--~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 110 YFKTNPKA-ALKNLDKAIEDSETYGHS--A-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHhcCHHH-HHHHHHHHHHHHhccCch--h-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 98888777 999999999988774321 1 12223333 3333334899999999999988777667766666677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhcCCCCC---
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTN--KGENHPAVASVFVRLADM--YNRTGKLRESKSYCENALRIYEKPVPGV--- 511 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 511 (729)
+.+....+..+++++.++++....... .+..++....++..+-.+ +...|++..+...+++.-..+.......
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~ 265 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWP 265 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 888888898999999999998776654 111234444555555444 4556777777766655444333221000
Q ss_pred ------------------------------ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC-C----CCc
Q 004811 512 ------------------------------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-Q----QST 556 (729)
Q Consensus 512 ------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~----~~~ 556 (729)
...-.+-+|..-|......+..++|.+++.++++...+... . ...
T Consensus 266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence 00112233444455566677777999999999998877541 0 001
Q ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 557 --------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE-RKSAFFGVALNQMGLACVQRYSINEAVE 621 (729)
Q Consensus 557 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (729)
...++..++.+.+-.+++..|......+.......+. ......+.+++..|..+...|+.+.|..
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 1233456677788899999999999988887665543 1223456778888999999999999999
Q ss_pred HHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHHHHHHHHHHH-
Q 004811 622 LFEEARSILEQECGP---YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEKRRLAELLKE- 696 (729)
Q Consensus 622 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~~~La~~~~~- 696 (729)
+|.+.+-.......+ ...-..-+..++..++...+........+...++..+.... ..+.....++..+-.++..
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 999555333222222 12223335567777887766544422222333322211111 1222333333333223322
Q ss_pred -hCCHhHHHHHHHHHHHhhc
Q 004811 697 -AGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 697 -~g~~~~A~~~~l~~al~~~ 715 (729)
.-...++. ..+..+++..
T Consensus 506 ~~~~~ne~k-~~l~~~L~~~ 524 (608)
T PF10345_consen 506 EPFSSNEAK-RHLQEALKMA 524 (608)
T ss_pred CccccHHHH-HHHHHHHHHH
Confidence 22233666 7777776654
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=1.2e-08 Score=106.61 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
......++..+...|-...|+..|++. ..|.....||...|+..+|..+..+-++.. .+
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d-- 456 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PD-- 456 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---Cc--
Confidence 344678999999999999998888764 345556778888999999999888777621 11
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
+..|..+|.+....--|++|.++.+.. .+.+...+|......++|.++..+++..+++
T Consensus 457 ----~~lyc~LGDv~~d~s~yEkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------ 514 (777)
T KOG1128|consen 457 ----PRLYCLLGDVLHDPSLYEKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEI------ 514 (777)
T ss_pred ----chhHHHhhhhccChHHHHHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhc------
Confidence 244666777666666666666665432 2335566777778899999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
+|.....|+.+|.+..+.+++..|..+|..++.+ .|+...+|++++..|...++-.+|...+.+|++..
T Consensus 515 --nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 515 --NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred --CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999998 66678999999999999999999999999999876
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.++ ..+|-+.-.+..+.|.+++|+..|.+.+.+-+...
T Consensus 584 ~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 433 24556677788899999999999999998765544
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=3.3e-08 Score=90.47 Aligned_cols=195 Identities=16% Similarity=0.117 Sum_probs=151.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
.+.++-+++....+.....- ...++...++-.+..+....|+.+-|..++++....+|.. ..+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHH
Confidence 44556666666665554432 1234456677788888889999999999999887777554 2444566888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
+...|++++|+++|+..++- + +....++-..-.+...+|+.-+|++.+...++. .+...++|..
T Consensus 96 lEa~~~~~~A~e~y~~lL~d-------d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLED-------D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhcc-------C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence 89999999999999988762 2 223445555556677888888999999999988 6777889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHhhccc
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR---VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~---~~~A~~~~l~~al~~~p~ 717 (729)
|+.+|...|+|++|.-+|++++-+ .|.....+.+||.++.-+|- +.-|. ++|.++++++|.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~ 223 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPK 223 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChH
Confidence 999999999999999999999865 68888889999999888774 44677 899999999994
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=7.4e-09 Score=96.85 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=121.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (729)
-+..|+..|+++......++.. .+. .-+...++.++++..+++++.. +|.....|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--------~~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--------DPL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--------Ccc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHHH
Confidence 4557888899887654432111 000 0112367788999999999998 89999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH-Hhcch--HHHHHHHHHHHHHHHHhCCCCC
Q 004811 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNE--LEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~ 554 (729)
..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++..+..
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l---------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---- 143 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL---------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---- 143 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----
Confidence 99999999999999999999999999 444577889999974 67777 599999999999998776
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
..++..+|..+...|++++|+.+|++++++.
T Consensus 144 ---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 ---VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4788999999999999999999999999874
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5.6e-10 Score=105.03 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (729)
+..+-.-|.-+.+.++|.+|+..|.+||++ +|..+..|.+.|.+|.++|.++.|++..+.++.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 445566678888899999999999999999 9999999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.+..+|.+||.+|..+|++++|+ +.|+++|+++|+
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~-~aykKaLeldP~ 181 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAI-EAYKKALELDPD 181 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHH-HHHHhhhccCCC
Confidence 8999999999999999999999999 999999999998
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=1.6e-08 Score=93.67 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=141.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
..|....+ ..++..+...|+-+.+..+..++... ++.....+..+|...+..|+|.+|+..+.++..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--- 129 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--- 129 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence 45555566 88899999999999999988887665 6666677777999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
.|..+.+|..+|.+|.+.|++++|...|.+++++.+.. ..+..++|..|.-.|+++.|..++..+..
T Consensus 130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44557889999999999999999999999999998876 36788999999999999999999998876
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
. +.....+..+++.+....|++++|.....+-+
T Consensus 197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred C--------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 3 12234678899999999999999987765533
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.04 E-value=1.2e-08 Score=88.08 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
....+.+|..+...|++++|...|+-...+ .+.....|.+||.++..+|+|.+|+..|.+|+.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------- 98 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------- 98 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence 455678999999999999999999988876 3446789999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~ 688 (729)
+|+....++++|.|+...|+.+.|+..|+.++..+ ..+|.......
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----~~~~~~~~l~~ 144 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----GEVSEHQILRQ 144 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccChhHHHHHH
Confidence 88889999999999999999999999999999987 24566554443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=3.5e-09 Score=93.40 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
.......+|.++...|++++|...|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------- 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 4567889999999999999999999999998 7888899999999999999999999999999876
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.....++.+|.++...|++++|. ..|+.+++++|+
T Consensus 81 -~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 117 (135)
T TIGR02552 81 -DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGE 117 (135)
T ss_pred -CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccc
Confidence 5888899999999999999999999 999999999998
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=2.5e-07 Score=87.37 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
...++..|..++..|+|.+|+..|++.+..+ +..+....+.+.+|.++...|++++|+..+++.+..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 4567889999999999999999999998874 346778899999999999999999999999999999654
Q ss_pred ChHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811 512 PPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
++....+++.+|.++..+. ...+|+..|+..+..+|+.. -..+|...
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~ 132 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR 132 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence 5567788888888876543 34578888888888877652 12334333
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
+..+... .+.--..+|..|.+.|.+..|+..++.+++.+ |+.+....++..++.+|..+|..+.
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 3333322 33445567999999999999999999999883 3356666789999999999999885
Q ss_pred HH
Q 004811 661 AI 662 (729)
Q Consensus 661 A~ 662 (729)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=2.2e-08 Score=92.72 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..++++..+.+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 5766777 89999999999999998888886655 2223445555899999999999999999999998776
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..+|..+|.+|.+.|+++.|...|.+++++... ...+.+++|..+.-.|+++.|..++..+...
T Consensus 133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAPN--------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6 578899999999999999999999999998432 3468999999999999999999999999876
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
-+....+..+|+.+...+|++++|.....+-+
T Consensus 198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 45566788999999999999999988776544
No 129
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.01 E-value=2.3e-09 Score=84.02 Aligned_cols=76 Identities=28% Similarity=0.386 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
+..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 346789999999999999999999999999999 6666767788899999999999999999999999999999875
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.9e-09 Score=98.81 Aligned_cols=120 Identities=23% Similarity=0.239 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
+.-+-.-|.-+.+.++|.+|+..|.+||.+. +..+..|.+.|.+|.++|.++.|++-++.|+.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 4445567888899999999999999999972 335788999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
+|....+|..||.+|..+|++++|++.|++++++ +|++...+.+|..+-..++...
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999988 6888888888887777776655
No 131
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=7.7e-06 Score=88.45 Aligned_cols=341 Identities=12% Similarity=0.034 Sum_probs=220.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004811 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE-LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
+|...+.+..-+..|...|. +.+||++.-.|-+ |. .+..+...+.-.+..++..--..+....-.
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d-----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~-- 408 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD-----------PEMAADLLEQLEWQLFNGSELSLLLAWLKALPA-- 408 (894)
T ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC-----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCH--
Confidence 34556666666666667775 8888888665532 22 233444455556666665444333322110
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQ 374 (729)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (729)
..-..+| ......++......++.+|..+..++....+... +......+......|.+....|++++|+++.+
T Consensus 409 --~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar 482 (894)
T COG2909 409 --ELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLAR 482 (894)
T ss_pred --HHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0001111 2345677888889999999999988876643310 00112344555667788889999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454 (729)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 454 (729)
.++...+.... ...+.++..+|.+..-.|++++|+.+..++.+.....+.......+.+..+.++..+|+...| .
T Consensus 483 ~al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~ 557 (894)
T COG2909 483 LALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--E 557 (894)
T ss_pred HHHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--H
Confidence 99998877643 334577889999999999999999999999999888888787888888899999999943333 2
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004811 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (729)
Q Consensus 455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (729)
-.++.........+..+.........+.++...-+++.+..-....+++..... ........+++.|+.++...|+++
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~ 635 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLD 635 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHH
Confidence 233333322222222333223333344444444447777777777777654432 112222333468999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
+|...+.+...............+.++.........+|+...|.....+.
T Consensus 636 ~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 636 KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999998887663222344455555556667889999988877663
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=7.4e-09 Score=89.47 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
....++.+|..+...|++++|...|+-...+ +|.....|++||.++..+|++++|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------- 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------- 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3466788899999999999999999999999 9999999999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
+|+.+.+++++|.++...|+.+.|. ..|+.++...
T Consensus 99 -~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~ 133 (157)
T PRK15363 99 -KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRIC 133 (157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence 6888899999999999999999999 9999999887
No 133
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.99 E-value=2.2e-09 Score=84.16 Aligned_cols=77 Identities=34% Similarity=0.544 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
||+.+.++.++|.+|..+|++++|+.+|++++++ .+.+|+.+|..+.++.++|.++...|++++|+ .++++++++..
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~-~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL-EYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhc
Confidence 5888999999999999999999999999999999 77888888999999999999999999999999 99999998753
No 134
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=2.7e-08 Score=91.21 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
.+..++.+|.++...|++++|+..|++++.+.. .+...+.++.++|.++...|++++|+.+|++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 467788999999999999999999999998732 22334568999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811 637 YHPDTLGVYSNLAGTYD-------AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~ 688 (729)
+|.....+..+|.++. .+|++++|+..+.+++..+++.++.+++....+..
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 6766677777777777 89999999999999999999998877665544333
No 135
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.96 E-value=2.2e-07 Score=104.13 Aligned_cols=444 Identities=15% Similarity=0.104 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHHH-HHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHH
Q 004811 238 PQKALELALRAAKS-FEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (729)
Q Consensus 238 ~~~A~~~~~~Al~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 316 (729)
.+.|++++..|+-- ...+..-...|+. .+-++..+...+++.+|...=++++++.+...+..+|. .+..+..++.
T Consensus 640 ~~dav~~~~~al~k~~~~~~~~~fnp~~---f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv 715 (1236)
T KOG1839|consen 640 LDDAVKYATKALVKLVAVCGPYGFNPAG---FYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV 715 (1236)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCccc---cccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence 34577776555533 3333222222332 33337777888999999999999999887777877764 4556777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004811 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396 (729)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 396 (729)
.++....+.+|+.+-.+++.+.-.+.+..+|..+..+.+.+..-...+ +-+.+.+..+++-........+...+.. .
T Consensus 716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H 792 (1236)
T KOG1839|consen 716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H 792 (1236)
T ss_pred eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence 777888889999999999988877777667766654444333322223 7777888888887777666655555444 3
Q ss_pred HHHHHHHH---hCCHHHHHHHHHHHHHHH----HhCCCChh---------------------------HHHHHHHHHHHH
Q 004811 397 LMGLICET---KGDHEAALEHLVLASMTM----IANDQDAE---------------------------VASVDCSIGDTY 442 (729)
Q Consensus 397 ~lg~~~~~---~g~~~~A~~~~~~al~~~----~~~~~~~~---------------------------~~~~~~~la~~~ 442 (729)
.+..++.. ..+...+....-++.... ......+. ...-...+..+.
T Consensus 793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~ 872 (1236)
T KOG1839|consen 793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL 872 (1236)
T ss_pred HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence 33332222 222222222111111000 00000000 000001111122
Q ss_pred HHcCCHHHHH---HHHHHHHHHHHHhcCC-----------------------CCh--hHHHHHHHHHHHHHHcCCHHHHH
Q 004811 443 LSLSRYDEAG---FAYQKALTAFKTNKGE-----------------------NHP--AVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 443 ~~~g~~~~A~---~~~~~al~~~~~~~~~-----------------------~~~--~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
...|...-+. ..+..-+....+.... ..| ..+.-....+......|.+.+|.
T Consensus 873 ~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~ 952 (1236)
T KOG1839|consen 873 LKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAY 952 (1236)
T ss_pred hhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhh
Confidence 2222211111 1111111111111100 011 12233344566666778888888
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCC
Q 004811 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~ 573 (729)
+ .-+++.++.... +..++.....|..|+.++...+++++|+.+-.++.-+.....|... .....+.+++...+..++
T Consensus 953 ~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 953 E-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred h-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 8 777777766543 5568889999999999999999999999999999988887767654 556778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
...|...+.++..+..-..+..++..+.+..+++.++...++++.|+.+++.|+.......++..-.....+..+++++.
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 99999999999988766655555557778889999999999999999999999999999999888888889999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811 654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (729)
.++++..|....+....++...+|++|+........+
T Consensus 1111 s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred hhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 9999999999999999999999999998876654433
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.95 E-value=2e-08 Score=88.62 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (729)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (729)
.|++++...+.. ......+|..+...|++++|...|++++... +....++..+|.++...|++++
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence 455555554433 4667889999999999999999999988752 2246789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
|+.+|++++.+ +|.....++.+|.+|...|++++|+.+|++++++.
T Consensus 70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999998 78888899999999999999999999999999873
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.95 E-value=3.6e-07 Score=88.32 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
...++..|..+...|+|++|+..|++++... +..+....+...+|.+|.+.+++++|+..+++.++....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----- 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----- 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----
Confidence 4456778899999999999999999998873 234566667799999999999999999999999999544
Q ss_pred ChHHHHHHHHHHHHHHHhcc------------------hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004811 512 PPEEIASGLTDVSSIYESMN------------------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (729)
++....+++.+|.++...+ ...+|+..|++.++.+|+.. -
T Consensus 102 -~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~---------------------y 159 (243)
T PRK10866 102 -HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ---------------------Y 159 (243)
T ss_pred -CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------------------h
Confidence 6677888999998764443 13467777777777776551 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
..+|...+..+... .+.--..+|..|.+.|.|..|+.-++.+++.+ |+.+...+++..++..|.
T Consensus 160 a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 160 TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR 223 (243)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence 12333333222222 23344577899999999999999999998873 336777889999999999
Q ss_pred HcCChHHHHHHHHH
Q 004811 654 AIGRLDDAIEILEF 667 (729)
Q Consensus 654 ~~g~~~~A~~~~~~ 667 (729)
.+|..++|..+...
T Consensus 224 ~lg~~~~a~~~~~~ 237 (243)
T PRK10866 224 QLQLNAQADKVAKI 237 (243)
T ss_pred HcCChHHHHHHHHH
Confidence 99999999887654
No 138
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.9e-06 Score=76.59 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+..|..-+..|....+|++|...+.+|......+......+..+-..+.+...+..+.++..+|++|..++.+.+ .|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence 445666677788888999999999999888777777777888888999999999999999999999999999987 56
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
+.+..-...|--....-++++|+.+|++++.+.+. ++........+...++++.+..++++|-..+.+-..+....
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~- 183 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC- 183 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence 66666566666667788999999999999999877 44445556778888999999999999998888776665544
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
.........+.....+|+...+|..|..+|+...++ +....+....++.+|-..| ..|+.++....+.
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 223333445556666777788999999999886554 2222223345555555444 4567776655543
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=1.4e-05 Score=83.65 Aligned_cols=224 Identities=16% Similarity=0.196 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 434 VDCSIGDTYLSLSRYDEAGFAYQK------ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.|-.-|.+|.+..++++|+++|++ ++++.+-.+ .......-...|.-+...|+++.|+..|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence 344557777778888888888764 455544433 2333444455677788889999998888766444211
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
........+|.+|+..++..... ......|-.++.-|...|+|+.|.++|.++-..
T Consensus 739 ----------------ieaai~akew~kai~ildniqdq--------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~ 794 (1636)
T KOG3616|consen 739 ----------------IEAAIGAKEWKKAISILDNIQDQ--------KTASGYYGEIADHYANKGDFEIAEELFTEADLF 794 (1636)
T ss_pred ----------------HHHHhhhhhhhhhHhHHHHhhhh--------ccccccchHHHHHhccchhHHHHHHHHHhcchh
Confidence 12223344555665554432221 111233456677778888888888777654221
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH--
Q 004811 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEIL-- 665 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-- 665 (729)
..-...|-+.|+|+.|.++-+++.. .......|..-+.-+...|+|.+|..+|
T Consensus 795 ----------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 795 ----------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred ----------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 1123445566777777665555432 1223334445555555555555554444
Q ss_pred ----HHHHHHHHH---------HcCCCChhH-HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811 666 ----EFVVGIREE---------KLGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 666 ----~~al~~~~~---------~~g~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.++++++.+ +.+..||+. .+.+..+|.-|...|+...|. ..|-++
T Consensus 850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae-~~flea 908 (1636)
T KOG3616|consen 850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE-EHFLEA 908 (1636)
T ss_pred ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH-HHHHhh
Confidence 233333332 222344543 467788999999999999998 655544
No 140
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.6e-05 Score=83.24 Aligned_cols=227 Identities=16% Similarity=0.189 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH------hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 267 CLHVIAAIYCSLGQYNEAIPVLEQ------SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
.|...|.+|.+..++++|+++|.+ ++++.+... |...+..--..|.-+...|+++.|+.+|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 344556667777778888887765 333322111 1222233445677788888899888888776544222
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
........+|.+|+..+...-+..... ..|-.++.-|...|+|+.|.++|.++-
T Consensus 739 ----------------ieaai~akew~kai~ildniqdqk~~s---------~yy~~iadhyan~~dfe~ae~lf~e~~- 792 (1636)
T KOG3616|consen 739 ----------------IEAAIGAKEWKKAISILDNIQDQKTAS---------GYYGEIADHYANKGDFEIAEELFTEAD- 792 (1636)
T ss_pred ----------------HHHHhhhhhhhhhHhHHHHhhhhcccc---------ccchHHHHHhccchhHHHHHHHHHhcc-
Confidence 122233456777776665443332222 225667888889999999999887652
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH---
Q 004811 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC--- 497 (729)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--- 497 (729)
....--.+|.+.|+|.+|.+.-.+... .......|...+.-+-..|+|.+|..+|
T Consensus 793 -------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 793 -------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred -------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 122234567788899888776555432 3445666777777788888888887776
Q ss_pred ---HHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811 498 ---ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 498 ---~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.+++.++.+....+ .......+...+|.-|...|+...|...|-++-.
T Consensus 851 ~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 851 GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 44555554432111 1112334555666777777777777766665543
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.89 E-value=5.2e-07 Score=85.22 Aligned_cols=183 Identities=18% Similarity=0.241 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...++..|..++..|+|.+|+..|++.+... +..+. ...+.+.+|.+++..|++++|+..|++.+...+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence 5568889999999999999999999998875 33332 3456899999999999999999999999988644
Q ss_pred CCchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 004811 345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 413 (729)
++....+++.+|.+++... ...+|+..|+..+..+|+..-. .+|..
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~ 131 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK 131 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence 6788899999999877653 2357888888888888776421 12222
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
.+..+. ...+.--..+|..|...|.|..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 221111 11223345678999999999999999999988743 3566677889999999999988754
Q ss_pred H
Q 004811 494 K 494 (729)
Q Consensus 494 ~ 494 (729)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=3e-08 Score=98.20 Aligned_cols=258 Identities=16% Similarity=0.113 Sum_probs=155.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
.-++..|+|..++.-+.. ..............+.+++..+|+++..+.-... ...|. ..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence 345667888888865541 1223445566677788889999987765533211 11222 334455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
++..+...++.+.++..++.. ................|.++...|++++|++.+.+.- . ..
T Consensus 72 la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~-------lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----S-------LE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----C-------HH
T ss_pred HHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----c-------cc
Confidence 555554434444443333221 1111121223345566778888899998888876531 0 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
.......+|+..++++.|.+.++.+.++ .+ + ...+....+++.+..| ++.+|...|++..+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e-D---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE-D---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC-C---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-c---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 4445677888999999998888765432 11 1 1122222333444444 588888888886443
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+....++..+|.++..+|+|++|...+++++. .+|...+++.+++.+....|+..++..+++.++...+|+
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 345566788899999999999999999888874 367788889999999999998855443788888878875
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=1.9e-06 Score=83.26 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
....++..|..+...|++++|+..|++++..... .+....+...+|.+|...+++++|+..+++.++..|+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~- 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP- 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence 4556778899999999999999999999998433 456677789999999999999999999999999988774
Q ss_pred CCCcHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004811 553 QQSTVAGIEAQMGVMYYMLG---------------NY---SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (729)
....+++.+|.++...+ |. .+|+..|++.++.++. ...
T Consensus 104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y---------------- 159 (243)
T PRK10866 104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY---------------- 159 (243)
T ss_pred ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence 33567778887764443 22 2344555555544321 111
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (729)
..+|...+..+... .+.--+.+|..|.+.|.+.-|+.-++.+++-+ |..+...+++..++..|
T Consensus 160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 12233222222221 22233578999999999999999999999877 77788999999999999
Q ss_pred HHhCCHhHHHHHHHHHH
Q 004811 695 KEAGRVRSRKAQSLETL 711 (729)
Q Consensus 695 ~~~g~~~~A~~~~l~~a 711 (729)
...|..++|. .....+
T Consensus 223 ~~lg~~~~a~-~~~~~l 238 (243)
T PRK10866 223 RQLQLNAQAD-KVAKII 238 (243)
T ss_pred HHcCChHHHH-HHHHHH
Confidence 9999999998 655443
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.83 E-value=6e-08 Score=83.33 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (729)
.+++.+|..+...|++++|+..|++++.. .++++....+++.+|.++...|++++|+.+|++++... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46788999999999999999999999887 22234446789999999999999999999999999764 555
Q ss_pred hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+....++..+|.++...|++++|. ..++.+++..|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~ 108 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPG 108 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcC
Confidence 556788999999999999999999 999999999997
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=7.4e-08 Score=88.33 Aligned_cols=121 Identities=17% Similarity=0.062 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
......+++.+|.++...|++++|+..|++++.+.. ++.....++.++|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 345678889999999999999999999999999832 23445678999999999999999999999999998655
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
.......++.++..+|..+...|+++.|+..+.+++..+++.....+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 43222234445555555555999999999999999988777654444
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=4.6e-07 Score=83.37 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
..+..++.+|..+...|++++|+.+|++++.+... +.....++..+|.++...|++++|+.+|++++..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 101 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------ 101 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 44667899999999999999999999999986432 1223578999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCC
Q 004811 636 PYHPDTLGVYSNLAGTYDAIGR-------LDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~g~~ 679 (729)
+|.....+..+|.+|...|+ ++.|+..++++++.+++.+..+
T Consensus 102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 78888888899999987665 6666666666766666655443
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=3e-08 Score=98.27 Aligned_cols=253 Identities=17% Similarity=0.103 Sum_probs=158.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
-++..|+|..++.-+. + ... ...........+.+.+..+|+++..+.-+.. .. .|. ..+...+
T Consensus 10 n~fy~G~Y~~~i~e~~--~--~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~l 72 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS--L--KSF----SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRLL 72 (290)
T ss_dssp HHHCTT-HHHHCHHHH--C--HTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHHH
T ss_pred HHHHhhhHHHHHHHhh--c--cCC----CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHHH
Confidence 4566889888886655 1 111 1123345677889999999998877654421 12 222 2334555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+..+...++.+.++..++..+.- .............|.++...|++++|+..+.+. ....
T Consensus 73 a~y~~~~~~~e~~l~~l~~~~~~------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~lE 132 (290)
T PF04733_consen 73 AEYLSSPSDKESALEELKELLAD------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSLE 132 (290)
T ss_dssp HHHHCTSTTHHCHHHHHHHCCCT------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCHH
T ss_pred HHHHhCccchHHHHHHHHHHHHh------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Cccc
Confidence 55554444555554443332211 112233455667788888899999988877653 1134
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCC
Q 004811 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
.......+|..+++++.|.+.++.+.++ .++.. .+....+++.+..| ++.+|..+|++..+.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-------- 197 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-------- 197 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------
Confidence 5556778999999999999888776543 22221 22223344444555 5889999998854421
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004811 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI 671 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 671 (729)
.....+++.++.++..+|+|++|...+++++.. +|....++.+++.+...+|+. +.+.+++.+....
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 113567899999999999999999999999876 788888999999999999998 5566666665544
No 148
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.81 E-value=0.00022 Score=77.61 Aligned_cols=340 Identities=11% Similarity=-0.023 Sum_probs=210.9
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
+.....+..-+..+...|...+|+.+.-.|-+- ......+-..+.-+...++..--..+ ++..+.-
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----------~~aa~lle~~~~~L~~~~~lsll~~~----~~~lP~~ 409 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDP----------EMAADLLEQLEWQLFNGSELSLLLAW----LKALPAE 409 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCH----------HHHHHHHHhhhhhhhcccchHHHHHH----HHhCCHH
Confidence 444555666677777788888888766554322 22333344445555555554332222 2111000
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
. -...+......+.......++.+|..+..++....+..... .....+...-..|.+....|+++.|+++.+.++.
T Consensus 410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 01123344556677778899999999999888776553221 2223455556678888999999999999999986
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH--HHHHH
Q 004811 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES--KSYCE 498 (729)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~ 498 (729)
....... .....++..+|.+..-.|++++|..+...+.++.+.... ......+....+.++..+|+...| ...|.
T Consensus 487 ~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 487 QLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred hcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6544332 334557788999999999999999999999999877642 344455666778889999943333 33333
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004811 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (729)
Q Consensus 499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (729)
..-...... ...+.....++..+...+ -+++.+..-....+.+.............+++.|+.+++..|++++|.
T Consensus 564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~---~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 564 LIREQHLEQ--KPRHEFLVRIRAQLLRAW---LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHhhh--cccchhHHHHHHHHHHHH---HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 222221110 011112223333333333 337777777777777665443333333334468999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
..+.+...+..... .+....+.++.........+|+..+|.....+..
T Consensus 639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999888776544 3334444455555556667899999988887743
No 149
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1e-05 Score=81.02 Aligned_cols=409 Identities=14% Similarity=0.113 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--- 341 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 341 (729)
...+++.|.+|+...++..|++.....+........ .....+.+..-..+....+.++|+.++.-.-++....
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~----~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES----SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456788899999999999999888776654321111 1112223444555666667777776654333322110
Q ss_pred -hCC----------CCchH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004811 342 -LGE----------TDPRV-----------GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (729)
Q Consensus 342 -~~~----------~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg 399 (729)
.|. ..|.. ..+.......|.+..+...+..-.+.++.+..+. +..+...+
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs 247 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS 247 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence 110 01111 1122223334455555555555555555444322 34577889
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCC------
Q 004811 400 LICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGE------ 468 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~------ 468 (729)
..++..|++.+|.+.+...- +....+ ..|. ....++++|.+++++|.|.-+..+|.+|++ .+.+....
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 99999999999998875431 111111 1122 344568999999999999999999999996 44433211
Q ss_pred ---CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch-------------
Q 004811 469 ---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE------------- 532 (729)
Q Consensus 469 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 532 (729)
.......++++.|..|...|++-.|.++|.++...+... ...|..+|.++....+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---------PrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---------PRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 012345688999999999999999999999999998762 4567777777653211
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHhC--------------------------
Q 004811 533 ------------------------------------LEQAIKLLQKALKIYNDA-------------------------- 550 (729)
Q Consensus 533 ------------------------------------~~~A~~~~~~al~~~~~~-------------------------- 550 (729)
.+=|.-+++.++-+.+..
T Consensus 398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 122444455554443110
Q ss_pred --------CCCC--------C--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004811 551 --------PGQQ--------S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (729)
Q Consensus 551 --------~~~~--------~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (729)
.|+. + ....++.+.+.+-...|+.-.|+..-.+.++..+ ...++..|
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------lS~~~kfL 548 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------LSKIYKFL 548 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------hhhHHHHH
Confidence 0000 0 1244566778888899999999999988887632 23344444
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHH------------HHHHhc------CC---C-------ChhH--HHHHHHHHHH
Q 004811 607 -----GLACVQRYSINEAVELFEEARS------------ILEQEC------GP---Y-------HPDT--LGVYSNLAGT 651 (729)
Q Consensus 607 -----a~~~~~~g~~~~A~~~~~~al~------------~~~~~~------~~---~-------~~~~--~~~~~~la~~ 651 (729)
|.++..+.+..+|..++.--+- -+.... .+ . .++. ...+++||.+
T Consensus 549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a 628 (696)
T KOG2471|consen 549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA 628 (696)
T ss_pred HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence 4555567777787776654210 011100 00 0 1121 2367899999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
|..+|++++|..++..+..+..+. ....+......+-...|+...|. ..+++.
T Consensus 629 ~alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al-~~lk~~ 681 (696)
T KOG2471|consen 629 LALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDAL-ARLKQC 681 (696)
T ss_pred HHHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchH-HHHHhc
Confidence 999999999999999999875311 12233333334456789999998 766653
No 150
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=7e-06 Score=74.93 Aligned_cols=222 Identities=15% Similarity=0.159 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
.+..|..-+.+|....+|++|...+.+|.+-++... .....+.++-..+.+...+..+.++..+|++|..++.+..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-- 105 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-- 105 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--
Confidence 344455557788888999999999999998766543 1344567788888889999999999999999999998863
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
.++.+..-...+--....-++++|+.+|++++.+.... +........+...+.++.+...|.+|-..+.+-..+...
T Consensus 106 --spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 106 --SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred --CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 22333333333444456678999999999999998876 444555667788899999999999999998887776665
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
...... ....+.....+|+...+|..|..+|+...++ .+-..++...++.+|-..|. .|+.++....+.
T Consensus 183 ~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 183 CDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred Hhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 544332 2344555566777778999999999987665 22235666777788777664 577776665544
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.80 E-value=5.4e-08 Score=100.24 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (729)
+...|..++..|+|++|+.+|++++.+ +|....++..+|.+|..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 455688889999999999999999999 8889999999999999999999999999999987 688
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...+++++|.+|..+|++++|+ ..|++++.++|+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~ 102 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 8899999999999999999999 999999999997
No 152
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=1e-06 Score=98.41 Aligned_cols=219 Identities=12% Similarity=0.064 Sum_probs=152.2
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
+++..+...+|+.+..|+.....++..++ .++|++.+++||..+.-.. .....+.+.+|.+|-..| |.-+...+.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKV 1519 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHH
Confidence 68888899999999999999999999998 9999999999998762111 112245666677666666 667778889
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004811 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (729)
|++|.+.+ ....+|..|..+|...+.+++|.++|+..++.+. .....|..+|..++.+.+-+
T Consensus 1520 FeRAcqyc----------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1520 FERACQYC----------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred HHHHHHhc----------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHH
Confidence 99988875 1234688899999999999999999999888852 45678889999999998889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004811 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (729)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (729)
.|..++.+||...|.... .......|.+-+..|+.+.+...|+..+. ..|.....|.-+...-...|+
T Consensus 1582 aa~~lL~rAL~~lPk~eH------v~~IskfAqLEFk~GDaeRGRtlfEgll~------ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEH------VEFISKFAQLEFKYGDAERGRTLFEGLLS------AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHHHHhhcchhhh------HHHHHHHHHHHhhcCCchhhHHHHHHHHh------hCccchhHHHHHHHHHHccCC
Confidence 999999999888776321 22334445555555555555555544332 123333344444444444555
Q ss_pred HHHHHHHHHHHHHH
Q 004811 448 YDEAGFAYQKALTA 461 (729)
Q Consensus 448 ~~~A~~~~~~al~~ 461 (729)
.+.+...|++++.+
T Consensus 1650 ~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555443
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=8.5e-07 Score=78.91 Aligned_cols=124 Identities=20% Similarity=0.236 Sum_probs=98.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (729)
...++...+...++..+.- .++.+....+.+.+|.+++..|++++|...|+.++.. ..++.....+...
T Consensus 22 ~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------APDPELKPLARLR 90 (145)
T ss_pred HHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCHHHHHHHHHH
Confidence 3578888887777776665 2234455788899999999999999999999999987 3334555678889
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
|+.++...|++++|+..++.. ........++..+|.+|...|++++|+..|++|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998651 1222345567789999999999999999999874
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.78 E-value=1.1e-07 Score=98.10 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
+...|..++..|+|++|+.+|.+++.+. +....++..+|.+|..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 3466888999999999999999999862 224578999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (729)
...+++.+|.+|..+|++++|+..|++++.+ +|....+...++.+....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987 566677777777775554
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=3.6e-07 Score=84.06 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
..+.+..+.+++.+|..+...|++++|+.+|++++.+.. +.+ ....++..+|.++...|++++|+.+|++++..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPN-DRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445567788899999999999999999999999998742 111 12346899999999999999999999999998
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 004811 338 QKQVLGETDPRVGETCRYLAEAHVQALQ-------FSEAQKFCQMALDI 379 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~ 379 (729)
.|.....+..+|.++...|+ ++.|+..+.++++.
T Consensus 102 --------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 102 --------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred --------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 67778888899999988776 44444444444443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=5.5e-07 Score=80.09 Aligned_cols=135 Identities=22% Similarity=0.245 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
+...+..+...+..++ +..+...+++.+.-+ ...+....+...+|.+++..|++++|+..|+.++...
T Consensus 11 a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----- 78 (145)
T PF09976_consen 11 ASALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----- 78 (145)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence 3445566666667776 777777666666542 2224557788889999999999999999999999753
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
++. .....+.+.||.++...|++++|+..++... ..+....++..+|.+|...|++++|+..|++++
T Consensus 79 ~d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 79 PDP-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 222 2334568899999999999999999986621 135567788899999999999999999999874
No 157
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-07 Score=93.12 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=118.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (729)
...|..|++.|+|..|...|++|+..+......+. .....++.+++.++.++++|.+|+....++|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 45688999999999999999999988763322211 123457899999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+|.+..+++..|.++..+|+++.|+..|++++++ .|.+..+...|..+-.+..++.+...+.|..++..
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999988 68888889999988888877777754888888876
Q ss_pred ccc
Q 004811 715 NSR 717 (729)
Q Consensus 715 ~p~ 717 (729)
.+.
T Consensus 356 ~~~ 358 (397)
T KOG0543|consen 356 LAE 358 (397)
T ss_pred ccc
Confidence 553
No 158
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1e-05 Score=73.45 Aligned_cols=197 Identities=12% Similarity=0.147 Sum_probs=136.9
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
.+.+++|.++|.++-.++ ....++..|-..|.++.......+...+.+..|...+.+|
T Consensus 27 ~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy 84 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY 84 (288)
T ss_pred CcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 457888888887775544 2334455555666666666566666667777777777776
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
.. ++..+|+.+++++++++...+. ...-+..+..+|.+|..- .++++|+.+|+++-+.+..- ......-.++.
T Consensus 85 kk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~l 158 (288)
T KOG1586|consen 85 KK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLL 158 (288)
T ss_pred hc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHH
Confidence 55 5999999999999999887752 334456677899999875 99999999999999998652 22333445677
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
..+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++-.++
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 788888889999999999998877654442222223334456677777767766665555554444
No 159
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.75 E-value=1.6e-06 Score=97.53 Aligned_cols=400 Identities=14% Similarity=0.103 Sum_probs=268.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004811 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (729)
.++..+...+++.+|...-++++++.+..++...|+...-+..++..++....+.+|+.+-.+++.+.........+..+
T Consensus 670 s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~ 749 (1236)
T KOG1839|consen 670 SLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTA 749 (1236)
T ss_pred cCceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCcccc
Confidence 34777788899999999999999999999999999999999999988888888899999999988887666554444333
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CC-ChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHH--h
Q 004811 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQ-DAEVASVDCSIGDTYLS---LSRYDEAGFAYQKALTAFKT--N 465 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~--~ 465 (729)
..+.+....-...| +-++.++..+++.+... +. +...+.. ..+..++.. ......+..-.-++.++..+ .
T Consensus 750 a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~ 826 (1236)
T KOG1839|consen 750 ATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAA 826 (1236)
T ss_pred chhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhc
Confidence 33333322222222 55666666665443332 11 1111111 222222221 11111111111111110000 0
Q ss_pred cCCCChh---------------------------HHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHhcCC-------
Q 004811 466 KGENHPA---------------------------VASVFVRLADMYNRTGKLRESKS---YCENALRIYEKPV------- 508 (729)
Q Consensus 466 ~~~~~~~---------------------------~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~~------- 508 (729)
.+...+. ...-...+..+....|...-+.. .+..-+....+..
T Consensus 827 ~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ 906 (1236)
T KOG1839|consen 827 AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEP 906 (1236)
T ss_pred cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCC
Confidence 0000010 00000111122222222111111 1111111100000
Q ss_pred -CC--------------CChH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH
Q 004811 509 -PG--------------VPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM 570 (729)
Q Consensus 509 -~~--------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~ 570 (729)
.. ...| ..+.-....+......|.+.+|.+ .-+++.+..+..+.. +..+..|..++.++..
T Consensus 907 ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~ 985 (1236)
T KOG1839|consen 907 KSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNR 985 (1236)
T ss_pred CCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh
Confidence 00 0011 122334455666677888888888 888888877665554 4778889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.|++++|+.+-.++.-+..+....+++.....+.+++...+..++...|+..+.+++.+..-..++++|..+.+..+++.
T Consensus 986 ~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen 986 LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence 99999999999999999888888888888899999999999999999999999999999888888899999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 651 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++...++++.|+.+++.|+.+...++|+.+-.+...+..++++....+++..|. ...+....+.+.
T Consensus 1066 l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1066 LLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL-EHEKVTYGIYKE 1131 (1236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH-HHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 888777766554
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=5.5e-08 Score=74.01 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHhhcc
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG-RVRSRKAQSLETLLDANS 716 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g-~~~~A~~~~l~~al~~~p 716 (729)
+.++..+|.++...|++++|+.+|++++++ +|....+++++|.++..+| ++++|+ ..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence 568899999999999999999999999998 7999999999999999999 799999 99999999998
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=3.1e-07 Score=78.82 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.+++.+|..+...|++++|+..|.+++.... .......++..+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 4678899999999999999999999987521 12223567889999999999999999999999987 2224
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+....++..+|.++..+|++++|+.++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4456789999999999999999999999999873
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.71 E-value=1.4e-07 Score=77.09 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (729)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++.+ .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4678899999999999999999999988 6666678999999999999999999999999876 35
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
....++..++.++...|++++|. ..+..++..+|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 100 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDPN 100 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCCC
Confidence 55578999999999999999999 999999998874
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.3e-06 Score=88.11 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+....+++..+..++..|++++|+..++..+.. .|++...+...+.++...++..+|.+.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 345567888999999999999999999997776 7889999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
.|.......++|..|.+.|++.+|+..++..+.-.+.. ...|..|+..|..+|+..+|...
T Consensus 370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A-------- 430 (484)
T COG4783 370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA-------- 430 (484)
T ss_pred ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence 33446678899999999999999999998887766655 46788999999999987765433
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.++.|...|++++|+..+..+.+.
T Consensus 431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 -----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 355666789999999999988776
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.9e-07 Score=90.02 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
..+...-..|+.+++.|+ |..|+..|++|+..+......++. .....++.+++.||.++++|.+|+....++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345567788999999997 999999999999998754332222 2235678999999999999999999999999
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH-HH
Q 004811 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK 371 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~ 371 (729)
.+. +.+ ..++++.|.++..+|+|+.|+..|++++++ .|.+..+...|..+..+..++.+. .+
T Consensus 285 e~~-----~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 285 ELD-----PNN----VKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hcC-----CCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 333 446999999999999999999999999999 688888888888777666655444 67
Q ss_pred HHHHHHHHHHh
Q 004811 372 FCQMALDIHKD 382 (729)
Q Consensus 372 ~~~~al~~~~~ 382 (729)
+|..++.....
T Consensus 348 ~y~~mF~k~~~ 358 (397)
T KOG0543|consen 348 MYANMFAKLAE 358 (397)
T ss_pred HHHHHhhcccc
Confidence 77777765543
No 165
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=4.2e-06 Score=93.82 Aligned_cols=222 Identities=11% Similarity=0.142 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 004811 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (729)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (729)
..+-|++.+.- +|..+..|...-..+...++.++|.+.+++||....- ....+...+|..+-++...-
T Consensus 1443 saeDferlvrs--------sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~----REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--------SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF----REEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CHHHHHHHHhc--------CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc----chhHHHHHHHHHHHhHHHhh
Confidence 34445555544 7999999999999999999999999999999987411 11233344555555555555
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
|.-+.-.+.|++|.+++... .++..|..+|...+.+++|.++|+..++.+.+ ...+|..+|..+
T Consensus 1511 G~eesl~kVFeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFL 1574 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHH
Confidence 66677788899988887544 67888999999999999999999999887642 346899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (729)
+.+.+-++|..++.+|+..+.+ ..........|++-++.|+.+.+..+|+-.+.- +|...+.|.-+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVY 1640 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHH
Confidence 9999999999999999998332 235667788899999999999999999998854 68888889888
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 691 AELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
...-...|+.+... ..|++++.+.
T Consensus 1641 id~eik~~~~~~vR-~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVR-DLFERVIELK 1664 (1710)
T ss_pred HHHHHccCCHHHHH-HHHHHHHhcC
Confidence 88889999999998 9999988764
No 166
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.5e-06 Score=74.24 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=138.7
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
.+++++|.++|.++-.+ |....+|..|=..|.++-+..... +..+..+..|...+.
T Consensus 27 ~~k~eeAadl~~~Aan~-----------------------yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~~ 82 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANM-----------------------YKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAAN 82 (288)
T ss_pred CcchHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHH
Confidence 44677777666665544 444455666666666666666655 555666777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
+|.+ ++..+|+.+++++++++...+.-. .-+..+..+|.+|..- .++++|+.+|+++-+.+..... ....-.++
T Consensus 83 cykk-~~~~eAv~cL~~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC~ 157 (288)
T KOG1586|consen 83 CYKK-VDPEEAVNCLEKAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKCL 157 (288)
T ss_pred Hhhc-cChHHHHHHHHHHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHHH
Confidence 7655 499999999999999998876542 2345677889998865 8999999999999998765322 22233466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV----DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~----~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...|..-...++|.+|+..|++..... -+++.. -.-++.-|.++....+.-.+. ..+++..+++|.
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~ 227 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCc
Confidence 777888888999999999999887542 112221 223455667777778888888 999999999997
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=3.9e-07 Score=88.65 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=91.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811 601 VALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 601 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (729)
..++..|..+ ...|+|++|+..|+..++.+ |+++....+++.+|.+|...|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999981 2233346799999999999999999999999999876 77
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|...++++.+|.++...|++++|+ ..|+++++..|+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~ 249 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPG 249 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 8899999999999999999999999 999999999997
No 168
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.4e-06 Score=87.90 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh
Q 004811 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI 297 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (729)
|....+++..|...+..|+ +++|+..+...++.. |+.+..+...+.+++..++..+|.+.+++++.+.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~-~d~A~~~l~~L~~~~---------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQ-YDEALKLLQPLIAAQ---------PDNPYYLELAGDILLEANKAKEAIERLKKALALD-- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcc-cchHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--
Confidence 5666777778888888876 777777777644432 4446667777888888888888888888888775
Q ss_pred hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
+..+ ...+.+|.+|...|++.+|+..+...+.. +|+.+..|..||..|..+|+-.+|...
T Consensus 371 ---P~~~----~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A----- 430 (484)
T COG4783 371 ---PNSP----LLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLA----- 430 (484)
T ss_pred ---CCcc----HHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHH-----
Confidence 3332 23677888888888888888777776665 677777888888888887776655543
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004811 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
.+..|...|++++|+..+..+.+.
T Consensus 431 --------------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 --------------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344455567778888777776543
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.64 E-value=1.9e-07 Score=70.98 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG-RLDDAIEILEFVVGI 671 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 671 (729)
+.+|..+|.++...|++++|+.+|++++++ +|+...+++++|.+|..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999 9999999999999999999 799999999999986
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.63 E-value=0.00024 Score=69.64 Aligned_cols=302 Identities=15% Similarity=0.080 Sum_probs=205.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHH
Q 004811 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306 (729)
Q Consensus 227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 306 (729)
.|.+....|+ -..|...-.++-+++.. +.+ +.++..-+..-...|+|+.|.+-|+.++... ..
T Consensus 90 tGliAagAGd-a~lARkmt~~~~~llss-----Dqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---------Et 152 (531)
T COG3898 90 TGLIAAGAGD-ASLARKMTARASKLLSS-----DQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDDP---------ET 152 (531)
T ss_pred hhhhhhccCc-hHHHHHHHHHHHhhhhc-----cch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---------HH
Confidence 3444445565 67777777776655421 112 2334445777788999999999999988652 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
....+..|-.--...|..+.|+.+-+.+... -|....++...-...+..|+|+.|+++.+......--..+.
T Consensus 153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 153 RLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 2223334444446789999999999999888 47777888888888899999999999998776644322221
Q ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (729)
.....+..+...+.. ...-+...|...-.++.+ ..++.+..-..-+..++..|+..++-.+++.+-+.
T Consensus 225 aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~K------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~----- 292 (531)
T COG3898 225 AERSRAVLLTAKAMS-LLDADPASARDDALEANK------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA----- 292 (531)
T ss_pred HHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhh------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-----
Confidence 111122222222222 222356677776666654 34555566667789999999999999999888775
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 004811 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (729)
+.||.. +.+|....--+.++.-++++-.+..- .++.......++...+..|++..|..--+.+...
T Consensus 293 -ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 293 -EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred -CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 225544 44454444445566677776665322 4456778888999999999999999988888887
Q ss_pred HHhCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004811 547 YNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK 587 (729)
Q Consensus 547 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 587 (729)
.+.. .++..|+.+-... |+-.+...++-+++..
T Consensus 359 ~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7654 5677788887665 9999999999988874
No 171
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.7e-05 Score=73.68 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.-|.+|...|++++|++.......+ .+...-..++.++.+++-|...++++.++-. -.
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~l------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~ 170 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENL------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE----------DA 170 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HH
Confidence 3445555556666665555442221 1111223444555555555555555544321 12
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811 602 ALNQMGLACVQR----YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 602 ~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (729)
++..||..+... +++.+|.-+|++.-+. .+.....+..+|.|...+|+|++|...++.++.-
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------ 236 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK------ 236 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------
Confidence 333344433321 2344555555444332 2333345555666666666666666666666532
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 678 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++..++++.++..+-...|...++..+.+.++...+|+
T Consensus 237 --d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 237 --DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred --cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 34445555555555555666555554455555555554
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.60 E-value=2.6e-07 Score=73.38 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811 613 RYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (729)
.|+++.|+.+|+++++. .|. ....++.+|.+|..+|++++|+.++++ ... ++......+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~ 64 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLL 64 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHH
Confidence 68999999999999998 442 555788899999999999999999998 443 46667888889
Q ss_pred HHHHHHhCCHhHHHHHHHHHH
Q 004811 691 AELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~a 711 (729)
|.++..+|++++|+ ..|+++
T Consensus 65 a~~~~~l~~y~eAi-~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAI-KALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHH-HHHHHH
T ss_pred HHHHHHhCCHHHHH-HHHhcC
Confidence 99999999999999 988875
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=3e-07 Score=72.99 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=69.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
.+|+++.|+.+|+++++..+. .. ....+..+|.+++..|++++|+.++++ ... ++....+.+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 368999999999999987432 11 455777899999999999999999999 555 566677888899
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 004811 650 GTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~a 668 (729)
.++..+|++++|+..|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.58 E-value=0.00052 Score=67.40 Aligned_cols=299 Identities=15% Similarity=0.025 Sum_probs=207.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004811 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
|.+-.-.|+-..|.++-.++-.+...... ..++..-+..-...|+++.|..-|+-.+. ++.....-+.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqe------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLR 158 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQE------PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLR 158 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccch------HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHH
Confidence 44455678888999888888766554433 35566778888889999999999987652 2222222223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH-
Q 004811 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE- 515 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 515 (729)
.|-.--...|..+.|+.|.+++... -|...+++...-...+..|+++.|+++.+.......- +.+...
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi---e~~~aeR 227 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI---EKDVAER 227 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---chhhHHH
Confidence 3333345689999999999999887 6777788888888889999999999999876654211 111111
Q ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811 516 -IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 516 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
.+..+...+.... .-+...|...-.+++++.++. ...-..-+..++..|+..++-.+++.+.+. +.
T Consensus 228 ~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl-------vPaav~AAralf~d~~~rKg~~ilE~aWK~-----eP 294 (531)
T COG3898 228 SRAVLLTAKAMSLL-DADPASARDDALEANKLAPDL-------VPAAVVAARALFRDGNLRKGSKILETAWKA-----EP 294 (531)
T ss_pred HHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc-------chHHHHHHHHHHhccchhhhhhHHHHHHhc-----CC
Confidence 1222222222222 235777888888888876654 334455688999999999999999988774 22
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
+ +. ++.+|....--+.++.-++++-.+..- .|+..+.....+..-...|++..|..--+.+..+
T Consensus 295 H-P~-------ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--- 358 (531)
T COG3898 295 H-PD-------IALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--- 358 (531)
T ss_pred C-hH-------HHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---
Confidence 2 22 344455444445566667766554222 6788888999999999999999999988888765
Q ss_pred HcCCCChhHHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHhh
Q 004811 675 KLGTANPDVDDEKRRLAELLKEA-GRVRSRKAQSLETLLDA 714 (729)
Q Consensus 675 ~~g~~~p~~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~ 714 (729)
.|. ..++..|+.+-... |+..+.. .++-+++..
T Consensus 359 -----~pr-es~~lLlAdIeeAetGDqg~vR-~wlAqav~A 392 (531)
T COG3898 359 -----APR-ESAYLLLADIEEAETGDQGKVR-QWLAQAVKA 392 (531)
T ss_pred -----Cch-hhHHHHHHHHHhhccCchHHHH-HHHHHHhcC
Confidence 343 45677788887765 9999999 999999875
No 175
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.2e-05 Score=80.69 Aligned_cols=338 Identities=14% Similarity=0.059 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHh
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE-VQKQVL 342 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~ 342 (729)
..++...+..++..|+|.+|.+.+...--.. ..-+...+ ......|.++|.+++.+|.|.-+..+|.+|++ .+.++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4557778999999999999999886543221 11111111 11233478999999999999999999999996 443332
Q ss_pred CCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC---HHH
Q 004811 343 GET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD---HEA 410 (729)
Q Consensus 343 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~ 410 (729)
..- .....+++++.|..|...|+.-.|.++|.++...+..+. ..|..++.++....+ .++
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima~~~~l~ee 390 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMALQKGLLEE 390 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhhhhhhh
Confidence 110 123557889999999999999999999999999987764 568888888764321 111
Q ss_pred HHHHHHH--------------HHHHHH----hCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHh------
Q 004811 411 ALEHLVL--------------ASMTMI----ANDQDAEVASVDCSIGDTYLSLSRYDEA-GFAYQKALTAFKTN------ 465 (729)
Q Consensus 411 A~~~~~~--------------al~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~------ 465 (729)
......+ .+.+-. ..+........-..+|.++.+.+-+--- ...+...+......
T Consensus 391 ~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~ 470 (696)
T KOG2471|consen 391 GNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSS 470 (696)
T ss_pred ccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCC
Confidence 1111100 000000 0000000000011112222111100000 00000000000000
Q ss_pred ---------------cCC-------C--------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004811 466 ---------------KGE-------N--------HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (729)
Q Consensus 466 ---------------~~~-------~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (729)
.|. . ......++.+.+.+-..+|+.-.|+..-++.++..+
T Consensus 471 ~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------- 540 (696)
T KOG2471|consen 471 SEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------- 540 (696)
T ss_pred CcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh----------
Confidence 000 0 012345566777777888888888888888777632
Q ss_pred HHHHHHHHHHHH-----HhcchHHHHHHHHHHHH------H--HHHhCCC--------------CC---------CcHHH
Q 004811 516 IASGLTDVSSIY-----ESMNELEQAIKLLQKAL------K--IYNDAPG--------------QQ---------STVAG 559 (729)
Q Consensus 516 ~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~--~~~~~~~--------------~~---------~~~~~ 559 (729)
...++..||.+| +.+.+..+|...+.--+ . .....++ .. .....
T Consensus 541 lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v 620 (696)
T KOG2471|consen 541 LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGV 620 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHH
Confidence 234454555444 44666677766554310 0 0000000 00 11234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
.+++||.++.-+|++++|..++..|..+....... .+....-.+-+..|+...|+..+++..
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~------~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNV------QATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccH------HHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 57899999999999999999999999886532221 222222234456788888888777653
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.56 E-value=1.5e-06 Score=72.84 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (729)
.+++.+|.++-..|+.++|+.+|++++.. +...+....++..+|..+..+|++++|+.++++++.-+ |++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36788999999999999999999999885 44456667799999999999999999999999998642 333
Q ss_pred hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+........++.++...|+.++|+ ..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl-~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEAL-EWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 336777788899999999999999 76655543
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=4.1e-06 Score=70.30 Aligned_cols=99 Identities=22% Similarity=0.166 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.+.+.+|.++...|+.++|+.+|++++.. +........++..+|..+..+|++++|+..+++++.. .
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence 35678999999999999999999999884 2223445678999999999999999999999999876 4
Q ss_pred hh---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 639 PD---TLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 639 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
|+ ...+...++.++...|++++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44 666778899999999999999999988774
No 178
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=6.4e-05 Score=70.00 Aligned_cols=249 Identities=13% Similarity=0.048 Sum_probs=159.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
-++..|+|..++....+.-... . .......+.+.|..+|++...+.-...+ ..+. ..+...+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~---~------~~e~d~y~~raylAlg~~~~~~~eI~~~--------~~~~-lqAvr~~ 78 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK---T------DVELDVYMYRAYLALGQYQIVISEIKEG--------KATP-LQAVRLL 78 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc---c------hhHHHHHHHHHHHHcccccccccccccc--------cCCh-HHHHHHH
Confidence 3455677777666544432211 1 1234667778888888876655443211 1122 2233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+.+...-++.+.-+.-..+-+.. .........+..-|.+|..-|++++|++.......+ .
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E 138 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E 138 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence 55554455544444433333222 112233345555678899999999999988774333 2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004811 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
+...-..++.++.+++-|...++++.++..+. ++..||..|... +.+..|.-+|++.-+ +
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c
Confidence 33334567788899999999999988876543 445566655542 356666666665433 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.++ ....++.++.++..+|+|++|...++.++.. ++...+++.++..+-...|...++.+-+-.-+.
T Consensus 203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 222 3578889999999999999999999999998 777788999999999999998887765554443
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.3e-06 Score=82.30 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (729)
+++.|.-++..|+|..|...|...++. .|+.+....+++.||.+++.+|++++|...|..+++-+ +.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 677788888999999999999999987 44477788899999999999999999999999999866 78899
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+++++.||.+...+|+.++|. ..|+++++..|.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~ 247 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPG 247 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCC
Confidence 9999999999999999999999 999999999997
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.51 E-value=0.0028 Score=69.13 Aligned_cols=230 Identities=16% Similarity=0.064 Sum_probs=129.5
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHH
Q 004811 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (729)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (729)
...++ +.+|+....+.++-+ |....+...-|..+.++|++++|..+++..-... .++ -..+
T Consensus 20 ld~~q-fkkal~~~~kllkk~---------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~tL 80 (932)
T KOG2053|consen 20 LDSSQ-FKKALAKLGKLLKKH---------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLTL 80 (932)
T ss_pred hhhHH-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHHH
Confidence 34444 666666666665532 3344445556889999999999997766543332 222 2246
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
..+-.+|..++++++|..+|++++.. .|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+...
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y------ 145 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY------ 145 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc------
Confidence 77889999999999999999999988 577 677778888888888877655544333333333321
Q ss_pred HHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 392 AADRRLMGLICETKGDHEAALE-----HLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~-----~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
..|..+..+.......+.+.. +-++..+.. ...+.....+.+.. .-.++..+|++++|...+..-+.- ..
T Consensus 146 -yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~--~l 221 (932)
T KOG2053|consen 146 -YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAE--KL 221 (932)
T ss_pred -hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHH--hc
Confidence 124444444444444443333 122222211 11222222233322 235667789999999988433221 11
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+............+...++|.+-.+...+++..
T Consensus 222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1222222233344445555555554444444443
No 181
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.50 E-value=7.4e-07 Score=72.69 Aligned_cols=97 Identities=30% Similarity=0.423 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
+++.+|.++...|++++|+..+++++.. .|....++..+|.++...+++++|+.+|++++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence 4678899999999999999999999987 4555688999999999999999999999999987322
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
...++..+|.++...|++++|..++.+++...
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 23678899999999999999999999887654
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=4.7e-06 Score=81.10 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=87.3
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 559 GIEAQMGVMY-YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 559 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
...+..+..+ ...|+|++|+..|+..+..++. ......+++.+|.+|+..|++++|+..|++++.. .|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC
Confidence 3445556654 6679999999999999987543 2334678999999999999999999999999987 344
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
++....+++.+|.++..+|++++|+..|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77788999999999999999999999999999874
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=5.3e-07 Score=67.55 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.+|..++..|++++|+..|+++++. +|....+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 8999999999999999999999999999999987
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=1.2e-06 Score=65.71 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+|..+...|++++|+..|+++++. +|....+++.+|.++..+|++++|+ ..|+++++.+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 35789999999999999999999954 7999999999999999999999999 999999999996
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=5.3e-05 Score=68.05 Aligned_cols=232 Identities=15% Similarity=0.079 Sum_probs=145.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
+...+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4455677888899999999999999999999999 8999999999999999999999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 004811 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AIS 586 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~ 586 (729)
+|..-.+..+.|..++--|++.-|.+-+.+-.+-.+ .++... .|..+ -...-+..+|..-+.+ +..
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~---~DPfR~--LWLYl---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP---NDPFRS--LWLYL---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC---CChHHH--HHHHH---HHhhCCHHHHHHHHHHHHHh
Confidence 555567788889999999999999877765544333 333211 11111 1223466677655433 222
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
..+ . .+-|+..+ +-+|+..+ ..+++++....+... .-.....++++.||..|...|+.++|..+|+
T Consensus 196 ~d~-------e--~WG~~iV~---~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 196 SDK-------E--QWGWNIVE---FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred ccH-------h--hhhHHHHH---HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 110 1 11111111 11222211 122333332211100 0012234588999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (729)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~ 702 (729)
-++...-- +.-+..-+.+.|+.+...+.+..+
T Consensus 262 LaiannVy----nfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 262 LAVANNVY----NFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHhHH----HHHHHHHHHHHHHHhccccchhhh
Confidence 88764210 012233455556665555544333
No 186
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00025 Score=66.51 Aligned_cols=301 Identities=12% Similarity=0.067 Sum_probs=184.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004811 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (729)
..+|.-..+.+++++|+..|.+.+...-...+....+.-.+...++.+|...|++..-.+........+.... .+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence 3466667788899999999999887632222222223345678899999999998776666554443333222 233333
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811 434 VDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 434 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
+...+-..+ .....++.-+..+...++.+.+... .......-..++.++.+.|+|.+|+......+.-+++ -++
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DD 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDD 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcC
Confidence 333332222 3345677777887777776543210 1122334456788999999999999999998888777 345
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.+....++..-..+|....+..++...+..|.......+-++...+.+-..-|.+++...+|..|..+|-++++-+....
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 56667778888899999999999988888887776655444444444444557778888899999999999988654433
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004811 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFV 668 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 668 (729)
.........-|..+..+. .+..++-...++ .+++.+ +....+++...+..+.. +.+|..|+..|..-
T Consensus 241 ~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred chHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 221111111122233333 333333332222 222211 23445566666666643 34677777766654
Q ss_pred H
Q 004811 669 V 669 (729)
Q Consensus 669 l 669 (729)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
No 187
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.39 E-value=0.00025 Score=69.01 Aligned_cols=207 Identities=28% Similarity=0.390 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
.......+..+...+.+..+...+...+.. . ..+.....+..++..+...+++..++..+..++...+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL--E-----LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h-----hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 455666666777777777777777666653 0 022335556666677777777777777776666543332
Q ss_pred CCcHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 554 QSTVAGIEAQMGV-MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 554 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.......+. ++...|+++.|...|.+++... .. .......+...+..+...++++.|+..+.+++..
T Consensus 129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 196 (291)
T COG0457 129 ----DLAEALLALGALYELGDYEEALELYEKALELD----PE-LNELAEALLALGALLEALGRYEEALELLEKALKL--- 196 (291)
T ss_pred ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence 111222233 6777777777777777774421 00 0113344444555566677777777777777776
Q ss_pred hcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811 633 ECGPYHPD-TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 633 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.+. ....+..++.++...++++.|+..+..++... |.....+..++..+...|.++++. ..+..+
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 262 (291)
T COG0457 197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEAL-EALEKA 262 (291)
T ss_pred -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence 444 45566777777777777777777777777652 334445555666666666677777 777777
Q ss_pred Hhhcc
Q 004811 712 LDANS 716 (729)
Q Consensus 712 l~~~p 716 (729)
+..+|
T Consensus 263 ~~~~~ 267 (291)
T COG0457 263 LELDP 267 (291)
T ss_pred HHhCc
Confidence 76666
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=7.2e-06 Score=72.46 Aligned_cols=119 Identities=23% Similarity=0.197 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
.-+..+-.-|+.+|..|+ |.+|..-|..||.+++.. +......+|.+.|.++++++.++.|+..+.+++++.
T Consensus 93 ~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--- 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--- 164 (271)
T ss_pred HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence 345667788999999998 999999999999997654 234567789999999999999999999999999996
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004811 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (729)
+....++.+.|.+|..+..|++|+..|.+.++. +|....+...++.+
T Consensus 165 ------pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 165 ------PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL 211 (271)
T ss_pred ------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence 234456788999999999999999999999998 67766665555444
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=3.9e-05 Score=68.86 Aligned_cols=203 Identities=15% Similarity=0.065 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
..+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-------- 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-------- 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence 34566777888888888888888888888754 6778889999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHHH
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL-QKALKIYN 548 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~ 548 (729)
+|..-.+..+.|..+..-|++.-|...+.+-.+. ...+|... .|..+- ...-+..+|...+ +++.....
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhccH
Confidence 8988899999999999999999998887776555 22233322 222221 2234566666544 33333322
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
...| ...+-+.+ |+..+ ...++++....+. ...-......+++.+|..+...|+.++|..+|+-++.
T Consensus 199 e~WG----~~iV~~yL-------gkiS~-e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQWG----WNIVEFYL-------GKISE-ETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhhh----HHHHHHHH-------hhccH-HHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2211 11111222 22211 1223333222110 0001123457899999999999999999999999886
Q ss_pred H
Q 004811 629 I 629 (729)
Q Consensus 629 ~ 629 (729)
.
T Consensus 266 n 266 (297)
T COG4785 266 N 266 (297)
T ss_pred H
Confidence 5
No 190
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00036 Score=67.17 Aligned_cols=300 Identities=16% Similarity=0.117 Sum_probs=191.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004811 354 RYLAEAHVQALQFSEAQKFCQMALDIHKD--NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
...+.......++++++..+.+.+..... ..+......-.....+|.++...|+..+-..........+...+. +..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence 34444555566778888888888774211 111111112345678999999999998877776655443333222 222
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811 432 ASVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 432 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
+.+...+-..+. .-+..+.-+..+..+++...+... .......-..+..+|...++|.+|+......+.-.++.
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--- 161 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---
Confidence 333333333332 334555667777777776544320 12223345678899999999999999999998887773
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
++......++..=..+|+...+..+|...+..|.......+-++...+.+-..-|.++....+|..|..||-+|.+-+..
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 34555667777778899999999999998888877766554444444555555677888889999999999999987766
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 004811 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILE 666 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 666 (729)
.+... ....++-.|-.+-...+..++--.++. .+++. ......++...|.++.. +.+|+.|+.-|.
T Consensus 242 ~~~~v--~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 242 LDDDV--KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred cCCcH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 65542 233445555555556666666554443 33332 33445577778887754 346777777776
Q ss_pred HHH
Q 004811 667 FVV 669 (729)
Q Consensus 667 ~al 669 (729)
.-+
T Consensus 312 ~eL 314 (411)
T KOG1463|consen 312 KEL 314 (411)
T ss_pred HHH
Confidence 655
No 191
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.36 E-value=0.0011 Score=64.44 Aligned_cols=229 Identities=26% Similarity=0.300 Sum_probs=164.7
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
.+.+..+...+..++...... .........+..+...+++..+...+...... ...+.....+..++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence 345556666666655554332 11245777888888899999999888877643 23455667778888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
...+++..++..+..++.. .+.........+. ++...|+++.|...+.+++..... .......+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~ 171 (291)
T COG0457 106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL 171 (291)
T ss_pred HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence 8888888888888888775 2222233344444 889999999999999999663110 013345566
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.++..+...++++.|+..+.+++...+.. ....+..++..+...+++..|...+..++...+. ...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~ 237 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE 237 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence 66666888899999999999999887662 2456778899999999999999999999886432 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.+..++..+...+.++++...+.+++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666677777777899999999999887
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.36 E-value=0.0018 Score=69.40 Aligned_cols=190 Identities=18% Similarity=0.120 Sum_probs=133.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH---HHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHhCCCC
Q 004811 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA---SGLTDVSSIYE----SMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
-.+.--.|+-+.++..+.++.+. .. ...+... -.|+....... .....+.|.+.+......+|+.
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~-~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--- 266 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKS-EN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--- 266 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhcc-CC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc---
Confidence 33444569999999999988662 11 1121111 11111111111 2345677888888888887765
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
+..+...|.++...|+.++|+..|++++....... .....++..++.++..+.+|++|..+|.+..+..
T Consensus 267 ----~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--- 335 (468)
T PF10300_consen 267 ----ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--- 335 (468)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc---
Confidence 45677889999999999999999999885433322 2345688999999999999999999999988761
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004811 634 CGPYHPDTLGVYSNLAGTYDAIGRL-------DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~ 693 (729)
....+...+..|.|+...|+. ++|.++|.++-.+..+..|...|...-+.......
T Consensus 336 ----~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~ 398 (468)
T PF10300_consen 336 ----KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKY 398 (468)
T ss_pred ----ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHH
Confidence 223344566788899999999 99999999999988887777777655555444443
No 193
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.35 E-value=2.2e-05 Score=64.23 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...+-..|..+...|+ .+.|++.|.+|+.+. |..+.+|++.+..+.-+|+.++|+..+++++++. +
T Consensus 43 S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~---------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g 108 (175)
T KOG4555|consen 43 SRELELKAIALAEAGD-LDGALELFGQALCLA---------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----G 108 (175)
T ss_pred HHHHHHHHHHHHhccc-hHHHHHHHHHHHHhc---------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----C
Confidence 3455667778888887 999999999999987 5568889999999999999999999999999986 2
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
+. ......++...|.+|..+|+.+.|...|+.+-++
T Consensus 109 ~~-trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 109 DQ-TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred cc-chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 22 3445667999999999999999999999999877
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.34 E-value=1.6e-05 Score=65.06 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
.+-.-|..+...|+.+.|++.|.+++.+ .|..+.+|++.+..+..+|+.++|+..+++++++. +...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence 3455678888999999999999999999 68889999999999999999999999999999995 4445
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 6678899999999999999999999999988763
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.33 E-value=0.0002 Score=67.15 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
.+..++.-|...+..|+|++|+..|+.+... -+..|....+...++..+.+.+++++|+..+++-+.++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence 3567788899999999999999999987754 1235566788999999999999999999999999999544
Q ss_pred CChHHHHHHHHHHHHHHHhc-----ch---HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 511 VPPEEIASGLTDVSSIYESM-----NE---LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
++....+++..|.++... .+ ..+|+.-|+..++.+|+.. . . ..|.....
T Consensus 104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~---Y-a-----------------~dA~~~i~ 160 (254)
T COG4105 104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR---Y-A-----------------PDAKARIV 160 (254)
T ss_pred --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc---c-h-----------------hhHHHHHH
Confidence 666677777778776643 22 3445555555555555441 0 0 11111111
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
.+... .+.--..+|..|.+.|.+..|+..++.+++.+.. .+....++..+..+|..+|-.++|.
T Consensus 161 ~~~d~-----------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 161 KLNDA-----------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHH
Confidence 11111 2233445788999999999999999998887433 4566678888999999999998887
Q ss_pred HH
Q 004811 663 EI 664 (729)
Q Consensus 663 ~~ 664 (729)
..
T Consensus 225 ~~ 226 (254)
T COG4105 225 KT 226 (254)
T ss_pred HH
Confidence 65
No 196
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=6.6e-06 Score=72.67 Aligned_cols=123 Identities=13% Similarity=0.241 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
-.-|.-++..|+|++|..-|..|+.+++.... .....+|.+.|.++.+++.++.|+....+++++ +|..
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence 44578889999999999999999999766543 335678899999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A 703 (729)
..++...|.+|..+..+++|++-|++.+++ +|....+...++++--......++
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999976 577767766666665444443333
No 197
>PRK11906 transcriptional regulator; Provisional
Probab=98.29 E-value=4.3e-05 Score=77.85 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---HHHHHHhCCCCchHHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 004811 311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM 375 (729)
Q Consensus 311 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 375 (729)
++..|......+. .+.|+.+|.+|+ .+ +|..+.+|..+|.+++.. ....+|..+.++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4666666655543 467888899999 55 899999999999998865 235677888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (729)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (729)
|+++.+.+ +.++..+|.+....++++.|+..|++|+.+ .|..+.+++..|.+....|+.++|++.+
T Consensus 330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88877655 467999999999999999999999999764 7888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 004811 456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCENA 500 (729)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a 500 (729)
++++++ +|....+-...-.+ .+-....+.|+.+|-+-
T Consensus 396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 999998 66554433322222 33345677788777543
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.5e-05 Score=76.24 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHH
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~ 675 (729)
.+.-|..||.+|+.+|++..|...|.+|+++ .|+...++..+|.++..+. ...++..+|++++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---- 222 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---- 222 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----
Confidence 4678999999999999999999999999999 8888889999999887654 467999999999976
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.+..+++.||..++..|++.+|. ..++..++..|.
T Consensus 223 ----D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~ 259 (287)
T COG4235 223 ----DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA 259 (287)
T ss_pred ----CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence 7899999999999999999999999 999999999886
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=1.7e-05 Score=85.31 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI--------NEAVELFEEARSILEQECGPYHPDTLGV 644 (729)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~~~~~~~~~~~~~ 644 (729)
++..|+.+|++|+++ .+.++.++..++.++.....+ ..+....++++.+ +.++....+
T Consensus 357 ~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~ 422 (517)
T PRK10153 357 SLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRI 422 (517)
T ss_pred HHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHH
Confidence 477899999999997 233566777777766554322 2333333333222 113444568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+..+|..+...|++++|...+++|+.+ +|. ..++..+|.++...|+.++|+ ..|++|+.++|.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~L~P~ 485 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 888899999999999999999999987 464 679999999999999999999 999999999998
No 200
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.8e-05 Score=81.23 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (729)
.|-.++...++++.|+.+|++..+. .+ .+...++.++...++..+|+..+.+++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3455566678899999888886653 11 34556899999999999999999999977 78888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
..+...|..+...++++.|+...++++.+ .|.....|+.|+.+|...|+++.|+ ..++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHhc
Confidence 89999999999999999999999999987 6999999999999999999999999 66653
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.27 E-value=2.3e-05 Score=66.80 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (729)
...++.-|...+..|+|.+|++.|+.....+ |..+....+...|+.+|...|++++|+..+++.+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 4677888999999999999999999887762 2245566789999999999999999999999999885 88
Q ss_pred ChhHHHHHHHHHHHHHHhCC---------------HhHHHHHHHHHHHhhccc
Q 004811 680 NPDVDDEKRRLAELLKEAGR---------------VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~al~~~p~ 717 (729)
||....+++..|.++..+.. ...|. ..|+.++...|+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~ 131 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPN 131 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcC
Confidence 99999999999999999887 88999 999999999998
No 202
>PRK11906 transcriptional regulator; Provisional
Probab=98.26 E-value=1.7e-05 Score=80.76 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Q 004811 561 EAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARS 628 (729)
Q Consensus 561 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~ 628 (729)
++..|......+. .+.|+.+|.+|+... . -.+..+.+|..++.+++.. ....+|.++.++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS----D-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 3555665555553 456778888888321 1 1334677888888877654 245678888888998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
+ ++..+.++..+|.++...|+++.|...|++|+.+ +|+.+.+++..|.+..-.|+.++|. +.+
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i 395 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-ICI 395 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence 8 8899999999999999999999999999999987 7999999999999999999999999 999
Q ss_pred HHHHhhccc
Q 004811 709 ETLLDANSR 717 (729)
Q Consensus 709 ~~al~~~p~ 717 (729)
+++++++|.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 999999997
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=98.25 E-value=1.8e-05 Score=69.03 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
..+...+..|.-++..|++++|...|+-..-. ++...+.+..||.++..+++|++|+..|..+..+...+..
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 34566889999999999999999999987776 7788888999999999999999999999999998876655
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+ .+..|.++..+|+...|+..|..++.
T Consensus 107 p--------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 P--------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred c--------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4 78899999999999999999988864
No 204
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.25 E-value=3.1e-07 Score=87.46 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=148.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
+-..|.-|+.+|.|++|+.+|.+++.. .|.++..+.+.|..|+++..|..|...++.|+.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence 355788999999999999999999998 7888999999999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
....+|...+..-..+|...+|.+-++.++++-+... .|-..+.......++.-. . +...+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----------ELkK~~a~i~Sl~E~~I~-~------KsT~G~ 224 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----------ELKKSLARINSLRERKIA-T------KSTPGF 224 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----------HHHHHHHHhcchHhhhHH-h------hcCCCC
Confidence 6788999999999999999999999999999877641 122222222222221100 0 011000
Q ss_pred ----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 595 ----KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 595 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.........-.-|..+...|.++.++.++-.-+.. ..+......+ +..|...-+++.|+.-.-+++.
T Consensus 225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~--------~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRAT--------IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred CccccchhhhccccCcchhhhhhhccccceeEeeccccc--------cCccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000111223355666777777777777665543 1122112222 5667777778887766655543
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
. .|........-+..-.-.|...++. ..++.++.+.|.
T Consensus 296 ~--------~~s~~~~~s~~~~A~T~~~~~~E~K-~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 296 P--------KPTPMPDTSGPPKAETIAKTSKEVK-PTKQTAVKVAPA 333 (536)
T ss_pred C--------CCCcCcccCCCchhHHHHhhhhhcC-cchhheeeeccc
Confidence 2 1222222222233333445666777 777777777765
No 205
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.23 E-value=3.2e-05 Score=83.22 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHH
Q 004811 310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALD 378 (729)
Q Consensus 310 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~ 378 (729)
-++..|..+...++ +..|+.+|++|+++ +|+++.++..++.+|.....+ ..+.....+++.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35666777766554 78999999999999 899999999988887665332 333334444333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
+..... . +.++..+|..+...|++++|...+++|+.+ .+. +.+|..+|.++...|++++|++.|++|
T Consensus 413 l~~~~~---~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPELNV---L---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cccCcC---C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 311111 1 356888899999999999999999999865 233 578999999999999999999999999
Q ss_pred HHH
Q 004811 459 LTA 461 (729)
Q Consensus 459 l~~ 461 (729)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 998
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=98.23 E-value=1.2e-05 Score=70.13 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
.....+..|.-++..|++++|..+|+-.... ++...+.+..||.++..+++|++|+..|..+..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------- 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL------- 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 4456677888899999999999999988877 7777888999999999999999999999999876
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.++.+...+..|.+|..+|+.+.|. ..|+.++..
T Consensus 101 -~~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~ 134 (165)
T PRK15331 101 -LKNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER 134 (165)
T ss_pred -ccCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence 3445556899999999999999999 999999884
No 207
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.017 Score=63.83 Aligned_cols=149 Identities=21% Similarity=0.204 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh---------
Q 004811 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FKTN--------- 465 (729)
Q Consensus 397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~--------- 465 (729)
..|.-++..+.|+.|.-.|... .-|..|+..+..+|+|..|....++|-.. ++..
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~v--------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNV--------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhh
Confidence 4455556666666665555422 34566778888888888888877776432 2211
Q ss_pred ------cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004811 466 ------KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (729)
Q Consensus 466 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (729)
.|-+-.-.+.-+-.+...|...|-|++-+.+++.++-+-+. ..-.+..||.+|.+- ++++-.++
T Consensus 1265 FrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1265 FRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHH
Confidence 11111122334456777888899999999999888877332 244567788777653 33443333
Q ss_pred HHH---------HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811 540 LQK---------ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 540 ~~~---------al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
++- .++.. ..+..|..+..+|.+-..|+.|
T Consensus 1335 l~LFwsRvNipKviRA~--------eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAA--------EQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHhcchHHHHHHH--------HHHHHHHHHHHHHHhhhhhhHH
Confidence 321 11111 1235566677777776666665
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00028 Score=61.97 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=122.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
...+.=+.+....-..+.+++.|.. .-.+.||......|++.+|..+|++++. +........+..+
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLgl 130 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGL 130 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHH
Confidence 3344445666666666666666554 3377899999999999999999999873 3344445678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+...+..+++..|...+++..+.-. ....+.....+|..|...|++.+|...|+.++..+.. ..
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~ 194 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQ 194 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HH
Confidence 9999999999999999998887621 1233456677899999999999999999999998533 34
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+....+..+..+|+.++|...+....+...+.
T Consensus 195 ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 195 ARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 45566888889999999888777666655443
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.18 E-value=0.00091 Score=62.87 Aligned_cols=196 Identities=18% Similarity=0.154 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
+..++.-|......|++++|+..|+....... ..+..-.+...++..+++.+++++|+..+++-+.++|.++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n- 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN- 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-
Confidence 56677888888889999999999988876522 24445678888999999999999999999998888876643
Q ss_pred CCcHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 554 QSTVAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
...+++..|.+++.. .|...+...+...-++..+.... .....+... +..+...+
T Consensus 107 ---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~dA~~~--------------i~~~~d~L- 166 (254)
T COG4105 107 ---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAPDAKAR--------------IVKLNDAL- 166 (254)
T ss_pred ---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchhhHHHH--------------HHHHHHHH-
Confidence 345566666665542 23333333333333332222111 111111111 11111111
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
+.-=..+|..|.+.|.+..|+..++.+++-+ ++.+....++..|..+|..+|-.++|. ..
T Consensus 167 -------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~--~~ 226 (254)
T COG4105 167 -------------AGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAK--KT 226 (254)
T ss_pred -------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHH--HH
Confidence 1122567899999999999999999999876 556778889999999999999999996 45
Q ss_pred HHHHhhcc
Q 004811 709 ETLLDANS 716 (729)
Q Consensus 709 ~~al~~~p 716 (729)
.+.|..|+
T Consensus 227 ~~vl~~N~ 234 (254)
T COG4105 227 AKVLGANY 234 (254)
T ss_pred HHHHHhcC
Confidence 55666554
No 210
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.16 E-value=5.8e-06 Score=62.53 Aligned_cols=66 Identities=32% Similarity=0.415 Sum_probs=56.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (729)
+..|++++|+.+|++++.. +|+...+++.+|.+|...|++++|...+++++.. +|+....+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 5689999999999999999 8999999999999999999999999999999865 56666666655
Q ss_pred HH
Q 004811 691 AE 692 (729)
Q Consensus 691 a~ 692 (729)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 211
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=0.00047 Score=64.21 Aligned_cols=242 Identities=14% Similarity=0.125 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004811 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (729)
Q Consensus 321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~ 400 (729)
....++|+.-|++++++- |+....-..++-.+..+++.+++|++-...|.+.+.........+... .+.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 347899999999999983 222334456778888899999999999999999987655432221111 11222222
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 004811 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----AVASV 476 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 476 (729)
.-....+.+--.++|+..+..+....+.......-..+|.+|+..++|.+-...+.+.-.-++.-.|+++. ....+
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 22234455555666776676666666666566666789999999999999888888877777766665433 33455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS-GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
|..-.++|..+.+-..-..+|++++.+-..+ .+|.+.- +.-.=|..+.+.|+|++|-.-|-+|.+-+........
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 5556678888888888888999999885543 2444333 2333456788899999999999999888877633333
Q ss_pred cHHHHHHHHHHHHHHcC
Q 004811 556 TVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g 572 (729)
....-|..||..+.+.|
T Consensus 270 ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 44445667888887766
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=4.4e-05 Score=78.36 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=101.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004811 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
|-.++...++++.|+.++++..+..+. +...++.++...++..+|+..+.+++. ..|.....+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence 344555678999999999998766532 356689999999999999999999984 234447888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (729)
...+..+...++++.|+.+.++++.+ .|.....|..|+.+|...|+++.|+..++.+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 89999999999999999999999999 7999999999999999999999999777643
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=2.9e-05 Score=73.43 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
+++.|.-+++.|+|..|...|..-++.++. ....+.+++.||.+++.+|+++.|...|..+++- -|.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 678888899999999999999998886432 4456789999999999999999999999999886 344788
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
..++++.||.+...+|+.++|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999875
No 214
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.0058 Score=59.15 Aligned_cols=302 Identities=13% Similarity=0.077 Sum_probs=192.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811 398 MGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (729)
.+.......++++++..|...+.........+ ..-.....+|.+|...|+..+-..........+.... .+..
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kaka 86 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKA 86 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHH
Confidence 33344445566777777766654322222222 2234567899999999999988777776666655443 3444
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811 474 ASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 474 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
+.....+-..... -+..+.-+.++..+++...+. .........-..+..+|...++|.+|+.+....+.-.... +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-D 162 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-D 162 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-c
Confidence 4444444444433 345667778888888876542 1122223344578899999999999999999988888776 6
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
+...+..++..-..+|+...+..+|...+..|........-+ |...+..-..-|.++....+|.-|..||-+|.+-+..
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 666666777777889999999999999888877665444332 2223333344466777778999999999999988766
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHH
Q 004811 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET 710 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~ 710 (729)
... +.....++-.+-.|-...+..++--.++..=..+. ......+++...|..+.. +.+++.|. ..|+.
T Consensus 242 ~~~--~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL-~~yk~ 312 (411)
T KOG1463|consen 242 LDD--DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK------YAGRDIDAMKAVAEAFGNRSLKDFEKAL-ADYKK 312 (411)
T ss_pred cCC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh------ccCcchHHHHHHHHHhcCCcHHHHHHHH-HHhHH
Confidence 543 34444444455555556666665554443222221 123345677777777653 45677777 77766
Q ss_pred HHhhcc
Q 004811 711 LLDANS 716 (729)
Q Consensus 711 al~~~p 716 (729)
-+.-||
T Consensus 313 eL~~D~ 318 (411)
T KOG1463|consen 313 ELAEDP 318 (411)
T ss_pred HHhcCh
Confidence 666555
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.00021 Score=62.71 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
=+.+.+..-..+.+.+.+.. .-.+.||..+...|++.+|..+|++++.-. . ......+..++.+.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr~~EA~~hy~qalsG~---f----A~d~a~lLglA~Aq 134 (251)
T COG4700 70 LDPERHLREATEELAIAPTV--------QNRYRLANALAELGRYHEAVPHYQQALSGI---F----AHDAAMLLGLAQAQ 134 (251)
T ss_pred cChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c----CCCHHHHHHHHHHH
Confidence 34444444444455554433 334678999999999999999999988631 1 11246788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (729)
+..+++..|...+++..+.- + ..........+|.+|..+|++.+|...|+.++..+ |. ..+....
T Consensus 135 fa~~~~A~a~~tLe~l~e~~-----p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y 199 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYN-----P-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYY 199 (251)
T ss_pred HhhccHHHHHHHHHHHhhcC-----C-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHH
Confidence 99999999999999887761 1 11223356788999999999999999999999763 33 4566677
Q ss_pred HHHHHHhCCHhHHHHHHHHHH
Q 004811 691 AELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~a 711 (729)
+..+.++|+.++|. ..+..+
T Consensus 200 ~e~La~qgr~~ea~-aq~~~v 219 (251)
T COG4700 200 AEMLAKQGRLREAN-AQYVAV 219 (251)
T ss_pred HHHHHHhcchhHHH-HHHHHH
Confidence 89999999998887 544443
No 216
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.10 E-value=0.0041 Score=61.93 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=143.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc----CCC--CCHH
Q 004811 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDN----GSP--ASLE 390 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~----~~~--~~~~ 390 (729)
....|+++.|..++.++-..........-...+..+++.|......+ +++.|..++++++++.... ... ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877532111112346678899999999999 9999999999999996441 111 1134
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 391 EAADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
...++..++.+|...+.++....... ++... ...++++... ...-.++...++.+.+.+.+.+++....-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 56788999999999988765554332 22222 3334444332 22223333378888888888888775210
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHH
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA--IKLLQKALKIY 547 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~ 547 (729)
..............+.. .....|...+...+...-.. ..+. .........-.+....++.... ++.+...+...
T Consensus 154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 01111111121222222 23456666666666543221 1111 1222222221111222222222 33333333332
Q ss_pred HhCCCCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 548 NDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 548 ~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
....+.+. ....++.+.|...++.++|+.|..+|+-++.
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22222221 2224466789999999999999999997763
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.09 E-value=0.00011 Score=62.75 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
...++.-|...+..|+|.+|++.|+......+ .......+...++.+|+..+++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 45567889999999999999999988766532 23345678899999999999999999999999998 566
Q ss_pred ChhHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 004811 638 HPDTLGVYSNLAGTYDAIGR---------------LDDAIEILEFVVGIREEKLGTANPDVDDE 686 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~g~~~p~~~~~ 686 (729)
||....+++..|.++..+.. ..+|...|++.+..+ |+++...++
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y-----P~S~ya~dA 138 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY-----PNSEYAADA 138 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC-----cCChhHHHH
Confidence 88888899999999988876 788888888888765 444444444
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0052 Score=57.35 Aligned_cols=241 Identities=13% Similarity=0.071 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchh----------hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----------EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 334 (729)
...|...-.++.++..+++|..-+...-+++.. .++......-+.....-|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 334444455666777777777666554443311 0111111122334455677777888888887766665
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 004811 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414 (729)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 414 (729)
.....++ -..+......+..+..+++-+. .+.+.+..++.-.|.|.-.+..
T Consensus 149 ~~~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~--------------~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 149 KTVVSKI---------------LANLEQGLAEESSIRLWRKRLG--------------RVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHH---------------HHHHHhccchhhHHHHHHHHHH--------------HHHHHHHHHHhcchhhhhhHHH
Confidence 5543221 1111122222444555554433 2366777888888889888888
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
+.+.+. .+++........+|.+.++.|+.+.|..+|+++-+......+ -.....+..+.+.+|.-.+++..|.
T Consensus 200 ~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 200 YHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred HHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHH
Confidence 887765 233444456677899999999999999999977655444432 3445567778888899999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
..|.+++.. ++..+.+.++.|.|+...|+..+|++.++.++++.|..
T Consensus 273 r~~~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 273 RFFTEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999888877 44456778889999999999999999999998887755
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00014 Score=69.84 Aligned_cols=116 Identities=20% Similarity=0.166 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhc
Q 004811 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQEC 634 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 634 (729)
+.-|..||.+|+.+|++..|...|.+|+++.. .....+..+|.++..+. ...++..+|++++..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----- 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAG--------DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----- 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence 46788999999999999999999999999832 13567778888777653 468999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004811 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~ 693 (729)
+|....+++.||..++..|+|.+|+..++..++.. .++.|....+-..++..
T Consensus 223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999998753 34555544444444433
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.07 E-value=0.006 Score=60.77 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=145.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-ChHHHHHHHHHhcccchh-----hccccch
Q 004811 231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI-----EEGQEHA 304 (729)
Q Consensus 231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~ 304 (729)
.+..|+ ++.|..++.++-.... ......-...+..+++.|......+ +++.|..+++++.++... ...++..
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 356776 9999999999988765 2111111556788999999999999 999999999999998532 2223333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
...+.++..++.+|...+.++...+ ...++....... |+....+..--.++...++.+.+.+.+.+++....-..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 5567889999999999988765444 334444443332 33333333333333347888888888888877543121
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHH
Q 004811 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL--SRYDEA--GFAYQKALT 460 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~ 460 (729)
.. .. .+...+-. ........|...+...+........+. ..... .+-.++... ++.... ++.....+.
T Consensus 156 ~~--~~--~~l~~i~~--l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 156 SN--FD--SILHHIKQ--LAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred ch--HH--HHHHHHHH--HHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 11 10 01111111 112234556666655553222221111 22221 122222222 222222 444444444
Q ss_pred HHHHhcC-CCChhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 461 AFKTNKG-ENHPAV----ASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 461 ~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
...+..+ +-.+.. ...+.+.|.-.++.++|++|..+|+-++.
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3322221 112222 23455668889999999999999998774
No 221
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.07 E-value=0.021 Score=58.99 Aligned_cols=441 Identities=13% Similarity=0.025 Sum_probs=237.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
.+....+|.+...|..+.+.+-.+ . +++..+.|++-+..+ |..+.+|.......+...+|+....+|.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345568999999999999877666 5 999999999988876 33455666667777888999999999999
Q ss_pred hcccchhhccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH--------
Q 004811 291 SIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-------- 361 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------- 361 (729)
+|.-. ..+..| +.|-.+....|+...+....-+|.++.....| -++.....|...+..+.
T Consensus 79 CLvkv----------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ 147 (656)
T KOG1914|consen 79 CLVKV----------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKY 147 (656)
T ss_pred HHHHH----------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccH
Confidence 98642 111122 22444455566666666666677666555444 23444444544443322
Q ss_pred -HhcCHHHHHHHHHHHHHHHHhcCCC-----CCHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC-C-----
Q 004811 362 -QALQFSEAQKFCQMALDIHKDNGSP-----ASLE-EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-D----- 428 (729)
Q Consensus 362 -~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~-~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~----- 428 (729)
...+.+.....|++|+..--.+... ...+ ........-.+-.....|-.|...+++...+...... .
T Consensus 148 ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 148 EENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP 227 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 2335566667777776432111000 0000 0000001111222334566666666665544332111 0
Q ss_pred ------hhHHHHHHHHHHHHHHc------CCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHH-------HHHHHHHHc
Q 004811 429 ------AEVASVDCSIGDTYLSL------SRY--DEAGFAYQKALTAFKTNKGENHPAVASVFV-------RLADMYNRT 487 (729)
Q Consensus 429 ------~~~~~~~~~la~~~~~~------g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~la~~~~~~ 487 (729)
......|.++-..-... |.. ..-.-.|++++..+ +..+.+|+ ..+.++...
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l--------~~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL--------GYHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhhHHHHHh
Confidence 01122222222111111 111 11122344444431 22233333 445555566
Q ss_pred CCHH-------HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHhCCCCCCcH
Q 004811 488 GKLR-------ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTV 557 (729)
Q Consensus 488 g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 557 (729)
|+.. ++..+|++++..... .....+..++..-...- +++.-..++++++.+....+
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l~~--------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~------ 365 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGLLK--------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL------ 365 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC------
Confidence 6554 455555555544211 12223333333222222 25555666777766654332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
..+|..+-..-.+..-...|...|.+|-+.-+. .++ ..+...+- -|...++..-|...|+-.+..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~---~hh---VfVa~A~m-Ey~cskD~~~AfrIFeLGLkk-------- 430 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT---RHH---VFVAAALM-EYYCSKDKETAFRIFELGLKK-------- 430 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC---cch---hhHHHHHH-HHHhcCChhHHHHHHHHHHHh--------
Confidence 233445555555556677788888887653111 111 12222222 244578999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.++....-......+...++-..|..+|++++.. . -........|..+-..-..-|+..... +.-++-....|
T Consensus 431 f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~--l~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~ 503 (656)
T KOG1914|consen 431 FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---V--LSADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP 503 (656)
T ss_pred cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc---c--CChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence 4555555556667788899999999999999864 1 111233456666666667778877766 55444444444
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0009 Score=62.22 Aligned_cols=141 Identities=14% Similarity=0.029 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
..+.+.++.++.-.+.|.-.+..+.+.++..+... ......+|.+..+.||.+.|..+|+...+.........
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q 249 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ 249 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc
Confidence 34566777888888999999999999988553322 34577899999999999999999997766555555556
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
....+..+.+.+|.-.+++..|...|.+++.. ++..+.+.++.|.|+...|+...|++.++.++....
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66677888899999999999999999999887 788889999999999999999999999999998843
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.05 E-value=2.3e-05 Score=60.20 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
|..+|...+++++|++++++++.+ +|+....+..+|.++..+|++.+|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999999 8999999999999999999999999999999977
No 224
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.03 E-value=0.00055 Score=63.75 Aligned_cols=240 Identities=13% Similarity=0.089 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (729)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (729)
+++|+.-|++++++- +.....-..++-.+..+++++|+|++-...|.+.+.........+.....+......
T Consensus 43 p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy--- 114 (440)
T KOG1464|consen 43 PKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY--- 114 (440)
T ss_pred HHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH---
Confidence 899999999998864 222233356788889999999999999999999987755444444433322222221
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH----HHHH
Q 004811 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAA 393 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~ 393 (729)
-....+.+--..+|+..+...+.. .++......-..||.+|+..++|.+-...+++.-..+....+.+.. ....
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 122333444445666666554432 1122233455679999999999999888888877766655443322 2234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (729)
Q Consensus 394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (729)
+|..-..+|..+.+-..-...|++++.+-...+.+.-...+.-.=|..+.+.|+|++|-.-|-+|.+-+...+.+ ....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhH
Confidence 455556677788888888888999987766665554445555556778899999999999998888877666532 2233
Q ss_pred HHHHHHHHHHHHHcC
Q 004811 474 ASVFVRLADMYNRTG 488 (729)
Q Consensus 474 ~~~~~~la~~~~~~g 488 (729)
..-|..||.++...|
T Consensus 272 CLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445666777777655
No 225
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.033 Score=61.71 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-C
Q 004811 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-S 555 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~ 555 (729)
|..||..+..+|+|..|....++|-.. .+|-..+..+...+.+.-|.-+ |.. .
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~--------------ktWK~VcfaCvd~~EFrlAQiC------------GL~ii 1276 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANST--------------KTWKEVCFACVDKEEFRLAQIC------------GLNII 1276 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccch--------------hHHHHHHHHHhchhhhhHHHhc------------CceEE
Confidence 445566666666666666655554322 2344444444444444333211 111 1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHH
Q 004811 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS---ILEQ 632 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~ 632 (729)
..+.-+-.+...|...|-|++-+.+++.++-+-+. ..-.+..||.+|.+- ++++-.++++-... +-+-
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKv 1347 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKV 1347 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHH
Confidence 12233455677778888888888888877766433 223456666666543 34444444332221 1000
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
+. ..+.+..|..|..+|.+-..|+.|.
T Consensus 1348 iR---A~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1348 IR---AAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HH---HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 00 1223335566666666666666554
No 226
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.01 E-value=1.8e-05 Score=75.79 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 004811 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~ 683 (729)
-..|.-|+++|.|++|+.+|.+++.. +|.+...+.+.|.+|+++.+|..|...+..|+.+ +..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 44688899999999999999999998 8888889999999999999999999999999988 4678
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+|.+.+.....+|+..+|. +.++.+|.+.|+
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~ 197 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAK-KDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcc
Confidence 899999999999999999999 999999999997
No 227
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.013 Score=55.34 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=154.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
..+|+-....+++++|+..|.+.+...-..-.....+...+...++.+|...|++..-.+......+...+...+ ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~---k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP---KI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch---hH
Confidence 456777778889999999998877551000000012344577889999999999877666665555544443322 11
Q ss_pred HHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 392 AADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 392 a~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
+.+...+-. +-.....++.-+..+...++........-.....-..+..+++..|.|.+|+......+.-+++.. +.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence 222222222 223345567777777766665544433333344556788899999999999999999988888775 46
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+....++..-..+|....+..++..-+..|........ -++...+..-..-|.+++...+|.-|..||-++++-+...
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l 239 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL 239 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence 77777888888999999999999988888877765542 1122233333444666777889999999999998876544
No 228
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.025 Score=68.60 Aligned_cols=411 Identities=11% Similarity=0.054 Sum_probs=207.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004811 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
.+|..-++.+. |..|+-++++- .....+.......+..+-.+|...++++........-... .
T Consensus 1388 tLa~aSfrc~~-y~RalmylEs~------~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-------~--- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH------RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-------P--- 1450 (2382)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHh------ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-------c---
Confidence 56767777776 77777777763 0111111222334555666899999998877776631111 0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.+...-..+...|++..|..+|+++++. +|+....+...-......|.+...+...+-.......
T Consensus 1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence 1444556677889999999999999887 4554433443333444455555555433322211110
Q ss_pred CCCHHHHHHHHHHH-HHHHHhCCHHHHHHHHH-----------HHHHHHHhCCCChhHHHHHHHHHHH----------HH
Q 004811 386 PASLEEAADRRLMG-LICETKGDHEAALEHLV-----------LASMTMIANDQDAEVASVDCSIGDT----------YL 443 (729)
Q Consensus 386 ~~~~~~a~~~~~lg-~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~~----------~~ 443 (729)
+. .-++.++ .+.++.++++.-..+.. .+.........+. ...+..+... ..
T Consensus 1516 ----~~-~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 ----EV-DELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred ----HH-HHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence 00 1111111 22244555544443321 0000000000010 0000001000 01
Q ss_pred HcCCHHHHHHHHHHHHHHHHH------h----cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811 444 SLSRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
..|-|..+.++.-+...+++- . .+.+......-|.+....-....+..+-+-.+++++-..... ....
T Consensus 1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence 111333333333322222110 0 011111111222222222112222444444455554443221 1335
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C
Q 004811 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-G 592 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~ 592 (729)
.....+|...|++....|+++.|..++-.|.+.. ...++...|..+..+|+...|+..+++.+.....- .
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 6678999999999999999999999888887654 24677889999999999999999999999765432 1
Q ss_pred CC--------CChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----------
Q 004811 593 ER--------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY---------- 652 (729)
Q Consensus 593 ~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------- 652 (729)
.. +......+...++......+++ ..-+.+|..+.++ +|.....++.+|..|
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence 11 1111222344444545555553 4566788888888 554444555555433
Q ss_pred --HHcCChHH---HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811 653 --DAIGRLDD---AIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 653 --~~~g~~~~---A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (729)
...|++.. |+-.|.+++..-.+..-..-|.....|..+|...
T Consensus 1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~ 1856 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHI 1856 (2382)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchh
Confidence 34456555 5555556654322222223355555555544433
No 229
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.91 E-value=3.7e-05 Score=59.07 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|..+|...+++++|+.++++++.+ +|+....+..+|.++...|++.+|. ..|+.+++.+|+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCC
Confidence 457899999999999999999987 6889999999999999999999999 999999999997
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.90 E-value=4.1e-05 Score=77.95 Aligned_cols=69 Identities=22% Similarity=0.152 Sum_probs=63.5
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD---DEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~---~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
.+|+...+++++|.+|..+|++++|+..|++++++ +|+.. .+++++|.+|..+|++++|+ .+|+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAl-a~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAA-DCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 37888999999999999999999999999999988 46655 56999999999999999999 99999999
Q ss_pred h
Q 004811 714 A 714 (729)
Q Consensus 714 ~ 714 (729)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 7
No 231
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.90 E-value=0.022 Score=59.38 Aligned_cols=151 Identities=10% Similarity=0.041 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 004811 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQ 632 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 632 (729)
.......+..++.+..+.|+++.|...+.++.......... ...+....+.++...|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 34556788999999999999999999998877643221111 235666778999999999999999998888 3332
Q ss_pred hc-------------------------CCCChhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811 633 EC-------------------------GPYHPDTLGVYSNLAGTYDAI------GRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 633 ~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~g~~~p 681 (729)
.. .......+.++..+|...... +..++++..|.+++.+ +|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence 20 111234456777888888777 8899999999999987 57
Q ss_pred hHHHHHHHHHHHHHHhCCHh-----------------HHHHHHHHHHHhhccc
Q 004811 682 DVDDEKRRLAELLKEAGRVR-----------------SRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~-----------------~A~~~~l~~al~~~p~ 717 (729)
....+++.+|..+...-+.+ .|+ ..|-+++...+.
T Consensus 290 ~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai-~~y~~al~~~~~ 341 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAI-EGYLKALSLGSK 341 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHH-HHHHHHHhhCCC
Confidence 77788888888876542222 255 666666666665
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.90 E-value=4.4e-05 Score=77.70 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG---VYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+..+..++++|.+|..+|+|++|+..|++++++ +|+... +|+++|.+|..+|++++|+.++++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999 777764 5999999999999999999999999986
No 233
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.85 E-value=0.051 Score=56.30 Aligned_cols=396 Identities=10% Similarity=-0.016 Sum_probs=203.2
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
|....+|+.|-.-+..+ -++++...|++.+... +..+. +|...........+|+....+|.++|.-.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvL-- 84 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVL-- 84 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--
Confidence 55677888887777666 8999999999999876 33332 477777778888999999999999987621
Q ss_pred hCCCCchHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH---------HHhCCHHHH
Q 004811 342 LGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC---------ETKGDHEAA 411 (729)
Q Consensus 342 ~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~---------~~~g~~~~A 411 (729)
....| ..|-.+....++...+.....+|.+..-....- .+....+|...+..+ ....+.+..
T Consensus 85 -------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v 156 (656)
T KOG1914|consen 85 -------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAV 156 (656)
T ss_pred -------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence 22222 233344445566555655555555544333221 111112233322222 222355556
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C-
Q 004811 412 LEHLVLASMTMIANDQDAEVASVDC-------------SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-------H- 470 (729)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~-------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~- 470 (729)
...|++|+.. +- ...-..|. ..-.+-.....|..|...+++...+.+-..-.+ .
T Consensus 157 RriYqral~t----Pm-~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 157 RRIYQRALVT----PM-HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHhcC----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 6677777531 10 00111111 111122234456677777766655543221100 0
Q ss_pred --hhHHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH-------
Q 004811 471 --PAVASVFVRLADMYNRTG------KL--RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL------- 533 (729)
Q Consensus 471 --~~~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------- 533 (729)
......|.++...-...+ .. ..-.-.|++++..+.-. ..-..+....+...+.++...|+.
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 011222333322211111 11 11222345555442110 000111223344455566666654
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
+++..+|++++...... ...+++.++..-...- .++.--.++++++.+... + ...++..+-..-
T Consensus 310 ~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~----~---~tLv~~~~mn~i 376 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI----D---LTLVYCQYMNFI 376 (656)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc----C---CceehhHHHHHH
Confidence 45555555555543322 1222333332222211 244555566666554321 1 123444444445
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG-TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (729)
.+..-...|...|.+|.+.-. .+. .++..-|. =|..+++.+-|...|+-.+..+ ++.|.. ...
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r------~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf-----~d~p~y---v~~ 440 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKR------TRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKF-----GDSPEY---VLK 440 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccC------Ccc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhc-----CCChHH---HHH
Confidence 555557788888888776411 121 22222222 2566899999999999888764 334444 444
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 690 LAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 690 La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
....+...++-..+. ..|++++..
T Consensus 441 YldfL~~lNdd~N~R-~LFEr~l~s 464 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNAR-ALFERVLTS 464 (656)
T ss_pred HHHHHHHhCcchhHH-HHHHHHHhc
Confidence 566778888888888 899998876
No 234
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.85 E-value=0.043 Score=60.27 Aligned_cols=230 Identities=17% Similarity=0.116 Sum_probs=141.0
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
..++|.+|+..+.+.++..|+.. .+...-|..+.++|+.++|..+++.. .. ..+..-..+..+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-----~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEAL-YG-----LKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhh-cc-----CCCCchHHHHHHHHH
Confidence 45789999999999998887653 34666788899999999999666532 21 122244566778899
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
|..++++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+. ++++++.. +... ...|.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~--pk~~---yyfWs 149 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNF--PKRA---YYFWS 149 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC--Cccc---chHHH
Confidence 99999999999999999987 566 66777777888888877654433 33333321 1112 22333
Q ss_pred HHHHHHHhcchHHHHHH-----HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811 522 DVSSIYESMNELEQAIK-----LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
-+..+.......++... +.++..+..-...|.....+.+. ..-.++..+|++++|...+..-+ .......
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~l--a~~l~~~-- 224 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITL--AEKLTSA-- 224 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHH--HHhcccc--
Confidence 34444443333333322 22222222222223222333332 23345667899999999884322 2222111
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.....+.....+...++|.+-.++..+++..
T Consensus 225 --~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 225 --NLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred --chHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1223344556777788888888888887776
No 235
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.84 E-value=3.4e-05 Score=51.67 Aligned_cols=41 Identities=44% Similarity=0.707 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (729)
+.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 45789999999999999999999999999999999999985
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.035 Score=53.85 Aligned_cols=165 Identities=12% Similarity=-0.019 Sum_probs=128.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004811 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
+.+..-.|++.+|-...++.++-+|... .++..--.+++..|+...-...+++.+.. -+.+.|-...+.-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence 4455667899999999999999887664 34666667888899988888888766421 1445666677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004811 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (729)
.++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.++..+.-...+.. ....
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~mla 246 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WMLA 246 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHHH
Confidence 8889999999999999999999999 78888999999999999999999999888765554321 2223
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811 517 ASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
..-|-..|.++..-+.|+.|++.|..-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 3445567888888899999999998643
No 237
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=5.6e-05 Score=57.07 Aligned_cols=53 Identities=30% Similarity=0.374 Sum_probs=49.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
+..|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999998 8999999999999999999999999999999887
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.81 E-value=0.06 Score=56.09 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811 598 FFGVALNQMGLACVQR------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (729)
..+.++..+|...... +..++++..|.+++.+ +|....+++.+|..+...
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 3466777788877777 8899999999999999 888888999999887654
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.75 E-value=0.0014 Score=67.10 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc--
Q 004811 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-- 303 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 303 (729)
......++.. ++++-+++..+|+++. |+.+.+|..|+.-. ..-..+|..+|+++++..+...+...
T Consensus 173 ~IMq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 173 EIMQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3344455554 4999999999999986 44577777766532 23467888888888876544333221
Q ss_pred --------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811 304 --------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 304 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
....+.+...+|.|..++|+.++|++.++..++... ..+...++.+|..++...+.|.++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence 112244567899999999999999999999987731 124667899999999999999999
Q ss_pred HHHHHHH
Q 004811 370 QKFCQMA 376 (729)
Q Consensus 370 ~~~~~~a 376 (729)
..++.+.
T Consensus 315 q~lL~kY 321 (539)
T PF04184_consen 315 QALLAKY 321 (539)
T ss_pred HHHHHHh
Confidence 9887764
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.71 E-value=0.0027 Score=65.04 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=121.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004811 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (729)
Q Consensus 483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (729)
-..+..+...-++...+|+++ .++.+.+|..|+.- ...-..+|..+|+++++..+...+...
T Consensus 177 ~AWRERnp~aRIkaA~eALei---------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~------- 238 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI---------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ------- 238 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh-------
Confidence 344566778888888999998 45556777666542 234468899999999988766543211
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--h
Q 004811 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP--D 640 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~ 640 (729)
.....|..-+.. .. .+......+-..+|.+..++|+.++|++.++..++. .| +
T Consensus 239 ----~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------~p~~~ 293 (539)
T PF04184_consen 239 ----FLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------FPNLD 293 (539)
T ss_pred ----hhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCccc
Confidence 111111111110 00 011113455677899999999999999999998876 33 3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCC---------------HhHHH
Q 004811 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE-AGR---------------VRSRK 704 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~-~g~---------------~~~A~ 704 (729)
...++.+|..++..++.+.++..++.+.-++ .-|..+...+.-|.+..+ .|+ ...|.
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~av 366 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAV 366 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHH
Confidence 5668999999999999999999888876432 135666666665554432 222 12466
Q ss_pred HHHHHHHHhhccc
Q 004811 705 AQSLETLLDANSR 717 (729)
Q Consensus 705 ~~~l~~al~~~p~ 717 (729)
+.+.+|++.||.
T Consensus 367 -eAi~RAvefNPH 378 (539)
T PF04184_consen 367 -EAIHRAVEFNPH 378 (539)
T ss_pred -HHHHHHHHhCCC
Confidence 788999999998
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.68 E-value=0.12 Score=55.51 Aligned_cols=172 Identities=16% Similarity=0.087 Sum_probs=118.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 404 TKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
-.||-+.++..+.++.. ..+-....+ ..|+.....+. .....+.|.+.+...... .|....
T Consensus 200 F~gdR~~GL~~L~~~~~---~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~l 268 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK---SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSAL 268 (468)
T ss_pred cCCcHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHH
Confidence 45889999998887743 111111111 11111111111 234566677777777666 688888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
.++..|+++...|+.++|+..|++++...... ..-...++..++.++..+.+|++|..++.+..+... .
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~------W 337 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK------W 337 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc------c
Confidence 99999999999999999999999988532221 223356788999999999999999999998887422 2
Q ss_pred cHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhCCCCCh
Q 004811 556 TVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
..+...+..|.++...|+. ++|..+|.++-.+..+......+
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3345567789999999999 88888888887777665444444
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.13 Score=54.98 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811 310 GHMQLGDTYAMLGQLENSLMCYTTGLEV-----QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
.|..+|......-.++-|...|-++-.. .+++ .....--...|.+-..-|+|++|.+.|..+-+..
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 3778888877777788887777665322 1110 0000011223444455688888888875442211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (729)
.-..++...|+|-...++++.. ....++.....++.++|..+..+..|++|.++|.+.-.....
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~ 828 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ 828 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence 1112344455555444444321 112233445556667777777777777777666543221000
Q ss_pred h--------c------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 465 N--------K------GENHPAVASVFVRLADMYNRTGKLRESKSYCE 498 (729)
Q Consensus 465 ~--------~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 498 (729)
. + ...-|.....+-.+|.++...|.-++|.+.|-
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 0 0 00013333344456666666666666665553
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.091 Score=53.37 Aligned_cols=144 Identities=11% Similarity=0.008 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 004811 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (729)
+..-|-++..++++.+|...|.+..+-. ...+. ..-.++.++-.-.+-+ +.+...+..+...++..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~-----~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~---- 75 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEK-----ESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQF---- 75 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHh-----hcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhc----
Confidence 4456888999999999999999987654 11111 1111222222222223 33444444444444443
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004811 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---ASLE----EAADRRLMGLICETKGDHEAALEHLVLAS 419 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~----~a~~~~~lg~~~~~~g~~~~A~~~~~~al 419 (729)
|.........|...++.++|.+|++.+............+ .... .-..-...+.++...|.+.++...+++.+
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4555666777888999999999999887665543332211 0000 01112345778889999999999999887
Q ss_pred HHHHh
Q 004811 420 MTMIA 424 (729)
Q Consensus 420 ~~~~~ 424 (729)
..+-.
T Consensus 156 ~~llk 160 (549)
T PF07079_consen 156 ERLLK 160 (549)
T ss_pred HHHhh
Confidence 65543
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00064 Score=62.47 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhHH-------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDTL-------GVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.++..-|.-++..|+|.+|...|+.|+..++.+.-. ..|+.. ..+.+.++|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 466777888999999999999999999988776533 233322 3678899999999999999999998886
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
. +|.+..+++..|.+....=+..+|. ..|.++|+++|.
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPS 296 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChh
Confidence 5 7999999999999999999999999 999999999997
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.62 E-value=0.0074 Score=53.64 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCCCCCh
Q 004811 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-SDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.+...|......++...++..+++++.++...+-..... ..| ......+...
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~~------------- 60 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLREL------------- 60 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHHH-------------
Confidence 344456666677888999999999998886542211000 111 1111222211
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (729)
...++..++..+...|++++|+..+++++.. +|....++..+..+|..+|+..+|+..|+++.....+-+|
T Consensus 61 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 61 -YLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp -HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 3356777888999999999999999999999 9999999999999999999999999999999999888777
Q ss_pred CC
Q 004811 678 TA 679 (729)
Q Consensus 678 ~~ 679 (729)
..
T Consensus 132 ~~ 133 (146)
T PF03704_consen 132 IE 133 (146)
T ss_dssp --
T ss_pred cC
Confidence 43
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.59 E-value=0.054 Score=59.66 Aligned_cols=279 Identities=16% Similarity=0.101 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHH
Q 004811 324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-----LQFSEAQKFCQMALDI---HKDNGSPASLEEAADR 395 (729)
Q Consensus 324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~---~~~~~~~~~~~~a~~~ 395 (729)
...|..+++.+... ....+...+|.+|..- .+.+.|+.+|+.+... ...... ..+.
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------~~a~ 291 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------PPAQ 291 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC------Cccc
Confidence 46788888877665 3456667777777654 5899999999999872 111111 1347
Q ss_pred HHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Q 004811 396 RLMGLICETKG-----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 396 ~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 467 (729)
+.+|.+|.... ++..|+.+|.++... ....+.+.+|.++..-. ++..|..+|..|...
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 78899988753 778899999888532 22356678888887755 577899999888764
Q ss_pred CCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Q 004811 468 ENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQK 542 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 542 (729)
....+.+.++.+|.. ..+...|..++.++.+. + + +.+...++.++..- ++++.+...+..
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~------g--~---~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK------G--N---PSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc------c--C---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence 345678888888875 35788999999999887 2 1 22333344433322 666666665554
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----C
Q 004811 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----Y 614 (729)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 614 (729)
.....-.... ..+..+.......... .+...+...+.++... ....+...+|.+|..- .
T Consensus 423 ~a~~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 423 LAELGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHHhhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCC
Confidence 4443322210 0011111111111111 1344455555544332 1346777888888754 3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHHH
Q 004811 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G--RLDDAIEILEFVVGI 671 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~~ 671 (729)
+++.|...|..+... . ....+++|.++..- | .+..|..+|.++...
T Consensus 490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 699999999999876 3 77899999998752 1 268888888888753
No 247
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.14 Score=62.41 Aligned_cols=356 Identities=12% Similarity=0.035 Sum_probs=184.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.+|.+-++.+.|.+|+-++++- ... +......-..++.+-.+|...++++.-......-.. +|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~-----ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RST-----EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS- 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccc-----cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc-
Confidence 6788889999999999999985 111 111112222355566689999999877665543111 122
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
+...-..+...|+|..|..+|++++...+..... +...-......|.+...+.+.+-... ...
T Consensus 1452 ---l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~------~~s 1514 (2382)
T KOG0890|consen 1452 ---LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII------NRS 1514 (2382)
T ss_pred ---HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh------ccC
Confidence 2333445667899999999999999887764322 22233333444555555543332210 111
Q ss_pred hHHHHHHHHH-HHHHHcCCHHHHHHHHH-------HHH---HHHHHhcCCCChhHHHHHHHHHHHH----------HHcC
Q 004811 430 EVASVDCSIG-DTYLSLSRYDEAGFAYQ-------KAL---TAFKTNKGENHPAVASVFVRLADMY----------NRTG 488 (729)
Q Consensus 430 ~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al---~~~~~~~~~~~~~~~~~~~~la~~~----------~~~g 488 (729)
+...-++.++ .+-...++++.-..+.. .+. .+.-... ..+....+..+.... ...|
T Consensus 1515 e~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~---~kD~~~~~~~i~~~r~~~i~~lsa~s~~~ 1591 (2382)
T KOG0890|consen 1515 EEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNK---KKDEIATLDLIENSRELVIENLSACSIEG 1591 (2382)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhc---ccchhhHHHHHHHHHHHhhhhHHHhhccc
Confidence 1111122221 12244455544433311 000 0000000 000011111111100 0111
Q ss_pred CHHHHHHHHHHHHH---------HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811 489 KLRESKSYCENALR---------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 489 ~~~~A~~~~~~al~---------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
-|..+.++.-+..- ...+..++.+......-|.+....-....+..+-+-.+++++-.....++....++.
T Consensus 1592 Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge 1671 (2382)
T KOG0890|consen 1592 SYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGE 1671 (2382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHH
Confidence 22233322222211 111111111111111112222221112223444455556655555444455668899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC--
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GP-- 636 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-- 636 (729)
+|...|.+....|+++.|..++-.|.+.. .+.++...|..++..|+-..|+..+++.+....... ++
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 99999999999999999999988887641 356788899999999999999999999997654321 11
Q ss_pred CChh------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHH
Q 004811 637 YHPD------TLGVYSNLAGTYDAIGRL--DDAIEILEFVVGI 671 (729)
Q Consensus 637 ~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 671 (729)
+.|. ...+...++......|++ ..-+.+|+.+.++
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 0111 122445555656666664 3445667777766
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.53 E-value=0.0064 Score=63.04 Aligned_cols=110 Identities=23% Similarity=0.278 Sum_probs=79.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
......+|..+..+..-+..|..+|. ..+|+.++..|+-..... .. -.++..+|.++.+.|...+|--++..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~-~~~A~~Ca~~a~hf~~~h------~k-di~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGE-PYQAVECAMRALHFSSRH------NK-DIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCC-hhhhhHHHHHHhhhCCcc------cc-cchhhhHHHHHHHcccccchhheeeh
Confidence 34445667766666555555555664 999999999999875332 11 23466789999999999999988888
Q ss_pred hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
|+.-.....+ -++.++.++..++.+.....+|..+.+.
T Consensus 275 A~~dA~~~t~---------n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 275 ALDDADFFTS---------NYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred hccCCccccc---------cceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 7765422222 2677999999999999999999888776
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.52 E-value=0.013 Score=59.34 Aligned_cols=181 Identities=15% Similarity=0.079 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCC
Q 004811 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
..+..++-..|....+|+.-+.+.+..-.+ +... ......+...+|.++.+ .|+.++|+..+..++... .
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~---~- 213 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD---E- 213 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---C-
Confidence 445667777888889998877777655443 1110 11123455677888888 999999999998875431 1
Q ss_pred CCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 594 RKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (729)
...+.++..+|.+|... ...++|+..|.++.++ +++. ..-.|++.++...|...+...-
T Consensus 214 ---~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~~~-Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 214 ---NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EPDY-YSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred ---CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cccc-cchHHHHHHHHHcCCcccchHH
Confidence 12346777788777542 2367788888887776 4432 2446777778888865555544
Q ss_pred HHHHHHHHHHHcC----CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 665 LEFVVGIREEKLG----TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 665 ~~~al~~~~~~~g----~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++........+| ...-.....+..++.+..-.|++++|. +.+++++.+.|.
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l~~~ 337 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCc
Confidence 4444422222222 112233445567788888899999999 999999999887
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0078 Score=58.18 Aligned_cols=140 Identities=9% Similarity=0.005 Sum_probs=65.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.|....++..--.+++.+|+...-...+++.+... .++.|-...+...++..+...|-|++|.+..++++++
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi---- 204 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI---- 204 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC----
Confidence 33333333444445555555555555554444332 1123444444445555555555555555555555555
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
++....+...++.++...|++.++.++..+.-...... .-....-|...+.++...+.|+.|++.|.+
T Consensus 205 -----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s---~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 205 -----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS---WMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred -----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---hHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 22334444555555555555555555554433322211 001122234445555555555555555553
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.51 E-value=0.053 Score=55.09 Aligned_cols=206 Identities=11% Similarity=0.042 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 004811 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525 (729)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 525 (729)
..+..+...+.+.+...+...+...-....+..++-..|....+|+.-+.+.+..-.+- ..+......+....|.
T Consensus 113 e~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 113 ERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHHH
Confidence 34444455555666655555532233345566777778999999998888777665541 1112233455667777
Q ss_pred HHHh---cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCC
Q 004811 526 IYES---MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 526 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 593 (729)
++.+ .|+.++|+..+..++..... ....++..+|.+|... ...++|+..|.++.++-
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----- 256 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE----- 256 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-----
Confidence 8877 89999999999887554322 1245667777777542 23566777777766652
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ----ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
+. ...-.+++.++...|...+...-.++....+.. ....+.-.....+..++.+..-.|++++|+..+++++
T Consensus 257 --~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 257 --PD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred --cc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11 123345556666666544333333333311111 1111223344566778888889999999999999999
Q ss_pred HH
Q 004811 670 GI 671 (729)
Q Consensus 670 ~~ 671 (729)
.+
T Consensus 333 ~l 334 (374)
T PF13281_consen 333 KL 334 (374)
T ss_pred hc
Confidence 76
No 252
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0035 Score=57.82 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----Ch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----SA------FFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
.++..-|+-+++.|+|.+|...|..|+..++.+.-.. +. .....+.+++.|++..|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4556778999999999999999999999887652221 11 1233678899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
. +|.+..+|+..|.+....=+..+|..-|.+++++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 8 9999999999999999999999999999999987
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.48 E-value=0.00024 Score=47.40 Aligned_cols=41 Identities=44% Similarity=0.531 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999998885
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.46 E-value=0.018 Score=46.77 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=86.2
Q ss_pred HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811 349 VGETCRYLAEA--HVQALQFSEAQKFCQMALDIHKDNGSPASLE----EAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 349 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
++.+|..|+.. ....|-|++|...+.+++++..........+ .+.++-.|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45566665544 4456889999999999999988776543222 36788899999999999999999999999877
Q ss_pred HhCCC-Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811 423 IANDQ-DA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 423 ~~~~~-~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
...+. +. ....+.++.|..+...|+.++|+..|+.+-++.....|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 65443 22 334555778899999999999999999999987766543
No 255
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0013 Score=60.35 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004811 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (729)
..-|..++...+|..|+..|.+++.+ +|..+..+.+.+.+|++..+++.+.....+++++ .+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~N 76 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DPN 76 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------ChH
Confidence 44466677777888888888888887 7888888888899999988999888888888888 566
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
.+..++.+|........|++|+..+.++..+....
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 78888888888888888999999999888887765
No 256
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0014 Score=63.20 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
.+.-+-.-|.-|+...+|..|+..|.+.|... ..++...+.+|.+.|-+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 45567778999999999999999999999875 4455567778999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+|....+++.-|.+++.+.++.+|..+++..+.+...
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999999998777643
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.028 Score=50.48 Aligned_cols=139 Identities=15% Similarity=0.163 Sum_probs=96.0
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHHHHHHHhCC------------C-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 564 MGVMYYMLGNY---SDSYDSFKNAISKLRAIGE------------R-KSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 564 la~~~~~~g~~---~~A~~~~~~al~~~~~~~~------------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
.|.-|....+. .+|-..|+++++....-.. . ...+-..+...++..+...+++++|+..++.++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44555544433 3666667766665421111 1 122233455677888999999999999999998
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004811 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
..... ..-...+-.+||.+...+|.+++|+..+..... +..........|.++...|+.++|+ ..
T Consensus 117 ~~t~D-----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar-~a 181 (207)
T COG2976 117 AQTKD-----ENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAAIVAELRGDILLAKGDKQEAR-AA 181 (207)
T ss_pred ccchh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHHHHHHHhhhHHHHcCchHHHH-HH
Confidence 65211 122233667899999999999999998876542 2334445567799999999999999 99
Q ss_pred HHHHHhhccc
Q 004811 708 LETLLDANSR 717 (729)
Q Consensus 708 l~~al~~~p~ 717 (729)
|++++..+++
T Consensus 182 y~kAl~~~~s 191 (207)
T COG2976 182 YEKALESDAS 191 (207)
T ss_pred HHHHHHccCC
Confidence 9999998654
No 258
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0012 Score=60.63 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
..-|..|+.-..|..|+.+|.+++.+ .+..+..+.+.+.++++..+++.+..-..+|+++ .|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence 34566777788899999999999986 3445678899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+...+.||.+......+++|+..+.++..+.+..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999887654
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0046 Score=59.80 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=94.7
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
+.++..+..+-.-|.-|++..+|..|+..|.+++.. +. .++...+..|.+.|.+.+..|+|..|+.-..+++.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KC--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cC--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 444556677777899999999999999999999874 22 234567889999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999887664
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.26 Score=52.69 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=41.4
Q ss_pred CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh----hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (729)
Q Consensus 258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 333 (729)
..|+|.. |..+|......-.++-|...|-+.-..... ..+.-+ .--...|.+-..-|+|++|.+.|-.
T Consensus 688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-----s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-----SKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-----hHHHHhHhHhhhhcchhHhhhhhhc
Confidence 4577655 667787777777888888888776544210 000000 0123455566667888888887754
Q ss_pred H
Q 004811 334 G 334 (729)
Q Consensus 334 a 334 (729)
+
T Consensus 760 ~ 760 (1189)
T KOG2041|consen 760 A 760 (1189)
T ss_pred c
Confidence 3
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.04 Score=49.50 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
...++..+...+++++|+..++.++.... +......+-.+||.+...+|.+++|+..+..... +..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESW 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccH
Confidence 45678889999999999999999886422 2334566778899999999999999988876543 233
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
........|.++...|+.++|+..|++++..
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4445677899999999999999999999986
No 262
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.38 E-value=0.043 Score=44.63 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 516 IASGLTDVSSIY--ESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 516 ~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
++.+|..|+..- ...|-|++|...+.+++++....|.... .-+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 345565555543 4557899999999999999988765432 235567789999999999999999999999988
Q ss_pred HHhCCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 589 RAIGERKSA---FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 589 ~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.+-++-+.. ....+.++.+..+...|+.++|+..|+.+.++..+..|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 876554432 23445667788999999999999999999998776554
No 263
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.38 E-value=0.0077 Score=55.03 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004811 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
+-++.-++-++...+ ......++..+|..|.+.|+++.|++.|.++.+.. .........+..+..+....++
T Consensus 17 ~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCC
Confidence 334444444443332 46667899999999999999999999999988873 3356678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
+.....++.++..+.... +++.....+...-|..++..++|..|...|-.+..-
T Consensus 89 ~~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 999999999999988764 555555556667788888899999999998776543
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.36 E-value=0.033 Score=61.31 Aligned_cols=269 Identities=16% Similarity=0.102 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-----ChHHHHHHHHH
Q 004811 220 LGPLLLKQARELISS----GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-----QYNEAIPVLEQ 290 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~----g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~ 290 (729)
...+...+|.+++.- .+|++.|+.++..|...+.+..... ...+.+.+|.+|.... ++..|+.+|.+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~ 318 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTK 318 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 334455566555443 2459999999999988432221111 1335778899998854 67889999999
Q ss_pred hcccchhhccccchHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh----
Q 004811 291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA---- 363 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 363 (729)
+.... . ..+.+.+|.++..-. ++..|..+|..|... ....+.+.++.+|..-
T Consensus 319 aA~~g-----~------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 319 AAELG-----N------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVE 377 (552)
T ss_pred HHhcC-----C------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcC
Confidence 98774 1 224778888888765 578999999988766 3557888888887643
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
.+...|..++.++.+... +.+...++.++... +.+..+.-.+.......... ....+..+.......
T Consensus 378 r~~~~A~~~~k~aA~~g~----------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~--~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN----------PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV--AQSNAAYLLDQSEED 445 (552)
T ss_pred CCHHHHHHHHHHHHHccC----------hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH--HhhHHHHHHHhcccc
Confidence 478899999999887652 12244444444333 77777666654443221111 011111111111111
Q ss_pred HHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811 443 LSL----SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 443 ~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
... .+...+...+.++.. .....+...||.+|..- .+++.|...|..+... .
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~- 505 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G- 505 (552)
T ss_pred ccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h-
Confidence 111 133444444444432 44567778888888764 4588999999888776 2
Q ss_pred HHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHH
Q 004811 515 EIASGLTDVSSIYESM---NELEQAIKLLQKALKIY 547 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~ 547 (729)
+....++|.++..- ..+..|..++.++.+..
T Consensus 506 --~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 506 --AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred --hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 66788899888651 22788888888877643
No 265
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.36 E-value=0.0013 Score=58.13 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004811 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (729)
|+.|.+.++..... +|...+.+++.|.++..+.++ .++..+++.++.-+++.+. -+|+..++++.||.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 56777777777777 899999999999988776544 3455555555544444332 16899999999999
Q ss_pred HHHHhCC-----------HhHHHHHHHHHHHhhccc
Q 004811 693 LLKEAGR-----------VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 693 ~~~~~g~-----------~~~A~~~~l~~al~~~p~ 717 (729)
+|..++. +++|. .+|++|.+.+|.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~ 112 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT
T ss_pred HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCC
Confidence 9987764 66788 899999999997
No 266
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.33 E-value=0.0048 Score=58.13 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004811 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY-----HPDTLGVY 645 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 645 (729)
...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|++.+.+..... .-+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 457888999998888776554444 446788999999999999999888888888888887765422 22445688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+.+|.++.+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999864
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.28 E-value=0.0047 Score=58.20 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=82.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-----ChhHHHH
Q 004811 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA-----NPDVDDE 686 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-----~p~~~~~ 686 (729)
....+++|++.|.-|+-...-... .+...+.++..+|++|..+|+.+....++++|+..+.+.+... .-+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~-~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKE-KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345789999999999877554433 3456778999999999999999999999999999988876422 2244678
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 687 KRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 687 ~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.+.+|.+..+.|++++|. .+|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~-~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAK-RWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHHcC
Confidence 899999999999999999 999999864
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.27 E-value=0.00068 Score=45.69 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (729)
.++..+|.+|..+|++++|+..|+++++. +|++..++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36889999999999999999999999987 6888889988875
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.24 E-value=0.00067 Score=45.73 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.++..+|.+|...|++++|++.|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8999999988875
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.24 E-value=0.02 Score=52.36 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=95.3
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
++.-+.....+........++..+|..|...|+++.|++.|.++.+.+.. .......+..+..+....+++....
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33333433445556677788999999999999999999999998876322 3456778889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.++.++-.+... +.+..........-|..+...++|.+|-..|-.+...+
T Consensus 94 ~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 94 KYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999877 33344444555566777778899999998887765443
No 271
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.22 E-value=0.4 Score=50.89 Aligned_cols=393 Identities=13% Similarity=0.044 Sum_probs=230.8
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
..+.......|-.-..|...|..-++.|. .+.++..|++++..+... .+. -+..++.+--..|+.+.-...
T Consensus 66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S------vdl--W~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS------VDL--WLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH------HHH--HHHHHHHHhccCCCHHHHHHH
Confidence 45556667889999999999999999996 999999999999887422 111 122234444456777888888
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-----
Q 004811 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----- 362 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----- 362 (729)
|++|+.......-. + ..|-..-..-..++++..-...|++.++.-.. ...-++..-.-+..
T Consensus 137 fe~A~~~vG~dF~S-~-----~lWdkyie~en~qks~k~v~~iyeRileiP~~--------~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 137 FERAKSYVGLDFLS-D-----PLWDKYIEFENGQKSWKRVANIYERILEIPLH--------QLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HHHHHHhcccchhc-c-----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhh--------HhHHHHHHHHHHHhcCChh
Confidence 88888775221111 1 12333334446677888888888888877211 11111111000111
Q ss_pred -hcCHHHHHHHHHHHHH---------------HH-HhcCCC-CCHHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 004811 363 -ALQFSEAQKFCQMALD---------------IH-KDNGSP-ASLEEAAD-----RRLMGLICETKGDHEAALEHLVLAS 419 (729)
Q Consensus 363 -~g~~~~A~~~~~~al~---------------~~-~~~~~~-~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~al 419 (729)
....+++...-..... .. .....+ ........ ....-.++...-...+.+..++..+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 1122222222211111 00 000000 00111110 0011111222222233333333332
Q ss_pred HH--HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 420 MT--MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 420 ~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
.. +...+..+.....|..........|+++...-.|++++--+ ......|...+......|+.+-|...+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 11 11123344555667777778888999999999999998763 556678899999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
..+.++..+. ...+...-+.+....|+++.|...+++...-++.. ..+-..........|+.+.+
T Consensus 355 ~~~~~i~~k~--------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 355 ARACKIHVKK--------TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HhhhhhcCCC--------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhh
Confidence 9998886542 23455566777788899999999999988776433 23333445566677888777
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
.. +......... +..+.......+...+... .-.++.+.|...+.+++++ .|+....+..+..+....+
T Consensus 420 ~~-~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 420 NY-KNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hH-HHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence 75 2222222211 2222233444555555443 3467899999999999998 7777777777766665554
No 272
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.15 E-value=0.48 Score=50.35 Aligned_cols=388 Identities=11% Similarity=-0.027 Sum_probs=218.3
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
|.....|...|..-.++|..+.+...|++++.-. + .....|. .++.+....|+.+.-...|++|+.....
T Consensus 76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p----~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~ 146 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----P----LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL 146 (577)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----h----hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence 5556677888899999999999999999998764 1 1112222 2333444667777777788888776422
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+-.....|-..-.....++++..-...|++.+++-...... ++..-.-+... +...-+-..++++.
T Consensus 147 -----dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~--------~f~~f~~~l~~-~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 147 -----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR--------HFDRFKQLLNQ-NEEKILLSIDELIQ 212 (577)
T ss_pred -----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH--------HHHHHHHHHhc-CChhhhcCHHHHHH
Confidence 12223344444444466778888888888888764322110 11100000000 00011111111111
Q ss_pred HHHhCC------CChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811 421 TMIAND------QDAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 421 ~~~~~~------~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
+..... ........+ ..+-.+-...+.++++...+.+...+ .=.++...-...+.
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK 274 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence 100000 000000000 00000000111122222222221111 11223333444555
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004811 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (729)
+..++..+...-... ....+.....|......-...|+++...-.|++++--+... ...|...+......|+
T Consensus 275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD 346 (577)
T ss_pred HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence 555665554322211 12233345567777777788999999999999998766544 4678888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
.+-|...+..+.++... . ...+...-+......|++..|...|++...- -|....+-..-+....
T Consensus 347 ~~~~~~~~~~~~~i~~k----~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVK----K---TPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER 411 (577)
T ss_pred hhHHHHHHHhhhhhcCC----C---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence 99998888888776432 1 2234455567777889999999999998877 5777777777788888
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhH-HHHHHHHHHH-HHHhCCHhHHHHHHHHHHHhhccc
Q 004811 654 AIGRLDDAIEILEFVVGIREEKLGTANPDV-DDEKRRLAEL-LKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~-~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++|+.+.+..+ ...+... .-|..++.. ...+...++. +.-.++.+.|. ..+.++++..|.
T Consensus 412 r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 412 RKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD 473 (577)
T ss_pred HhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence 99999988852 2222211 112233332 3334445544 45567888888 999999999887
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.11 E-value=0.00047 Score=43.22 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
+|++|+++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47899999 99999999999999999999999963
No 274
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.09 E-value=0.034 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 334 (729)
+...|......|+...++..+++++.+....+-+..+ ...+.++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344556667788899999999998886432221110 123445677888899999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
+.. +|..-.++..+..+|...|+...|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998877654
No 275
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.52 Score=49.43 Aligned_cols=221 Identities=12% Similarity=0.022 Sum_probs=135.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
.+..+..+...|+.+.|+..++.++....+ .-..-.++.+|.++..+.+|..|-..+....+...-..
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------ 337 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------ 337 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence 566788888888888999999988873222 23455778899999999999999999888776653221
Q ss_pred HHHHHHHHH-HHHH--------HhCCHHHHHHHHHHHHHHHHhCCC-ChhHHH----------------------HHHHH
Q 004811 391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIANDQ-DAEVAS----------------------VDCSI 438 (729)
Q Consensus 391 ~a~~~~~lg-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~----------------------~~~~l 438 (729)
+ .|..++ .++. ..|+.+.|..+++....+....+. .|.... -++.+
T Consensus 338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 1 122222 2221 234666666666655544443211 111100 01222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+ |...|=-.-+.....++..-++...-.+..+...-+..+|.++..+|+...|..+|..+++..... ..++...+.
T Consensus 416 ~--Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~Pf 491 (546)
T KOG3783|consen 416 A--YFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAVPF 491 (546)
T ss_pred H--HHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccccH
Confidence 2 222211111111111222211111111334455667788999999999999999999988653332 344556788
Q ss_pred HHHHHHHHHHhcch-HHHHHHHHHHHHHHHHh
Q 004811 519 GLTDVSSIYESMNE-LEQAIKLLQKALKIYND 549 (729)
Q Consensus 519 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 549 (729)
+++.+|.+|..++. ..++..++.+|.+...+
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 99999999999998 99999999999887643
No 276
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.05 E-value=0.0082 Score=53.20 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChHHHHHH
Q 004811 599 FGVALNQMGLACVQRYS----------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----RLDDAIEI 664 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~ 664 (729)
.+..+++.|.++..+.+ +++|+.-|++|+.+ +|+...+++++|.+|..++ +..+|..+
T Consensus 24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 46677777777766533 44555556666666 8999999999999997765 44455555
Q ss_pred HHHHHHHHHHH
Q 004811 665 LEFVVGIREEK 675 (729)
Q Consensus 665 ~~~al~~~~~~ 675 (729)
|++|...+++.
T Consensus 96 F~kA~~~FqkA 106 (186)
T PF06552_consen 96 FEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.02 E-value=0.0015 Score=41.07 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+++++|.++..+|++++|+ ..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence 357899999999999999999 999999999995
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.97 E-value=0.0093 Score=59.41 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
+|..+.....+.+..+.|..+|.+|+.. . .....+|...|.+.+. .++.+.|...|+.+++. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-----~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-----K---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-----C---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence 4566667777777799999999999631 1 1123567778888666 56666699999999998 5
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.....+......+...|+.+.|..+|++++... +........|......-...|+.+... ...+++.+..|+
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence 6666777788888999999999999999998642 111213567888888889999999888 888888888775
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.096 Score=50.51 Aligned_cols=138 Identities=19% Similarity=0.109 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.....+..+..+...|+ +.+|...+..++... ++...+...++.||...|+.+.|...+...-.-.
T Consensus 133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---- 198 (304)
T COG3118 133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---- 198 (304)
T ss_pred HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence 33455677888899997 999999999999875 3335667789999999999999999998743322
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
.......+.+...+..-....++..+. ++.+.. +|+...+.+.+|..+...|+.+.|.+.+-..+..
T Consensus 199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l----~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 199 -QDKAAHGLQAQIELLEQAAATPEIQDL----QRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred -hhhHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111111222222222333333322 222222 6889999999999999999999999998887776
Q ss_pred HHhcC
Q 004811 380 HKDNG 384 (729)
Q Consensus 380 ~~~~~ 384 (729)
.....
T Consensus 266 d~~~~ 270 (304)
T COG3118 266 DRGFE 270 (304)
T ss_pred ccccc
Confidence 55443
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.90 E-value=0.0028 Score=39.83 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
+.+|..+|.++..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999999
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.015 Score=58.04 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA 472 (729)
Q Consensus 394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (729)
+|..+.....+.+..+.|...|.+|+. .......+|...|.+.+. .++.+.|..+|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 466666777777789999999999852 233344677788888666 56666699999999998 466
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
....|......+...++.+.|..+|++++..... ......+|......-...|+.+....+.+++.+.++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6778888889999999999999999999876322 2223557777778888889999999999999888765
No 282
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.37 Score=51.19 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=28.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
..++...++|.+|..+.++- +.....++...|..+....++++|.+.|.+|-
T Consensus 780 VqlHve~~~W~eAFalAe~h-----------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKH-----------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hhheeecccchHhHhhhhhC-----------ccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 44555566666665544432 22233455555666666666666666665543
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.85 E-value=0.0025 Score=40.01 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+++.+|.++...|++++|+ ..|++++.++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence 357899999999999999999 999999999995
No 284
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.75 E-value=0.034 Score=44.82 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=62.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811 401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (729)
.....|+|..|++.+.+............ ....++.++|.++...|++++|+..+++++.+.++.. |......++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al 84 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYAL 84 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHH
Confidence 34678999999999999988776665544 5667788999999999999999999999999998875 234444444
Q ss_pred HHHHHH
Q 004811 478 VRLADM 483 (729)
Q Consensus 478 ~~la~~ 483 (729)
..+..+
T Consensus 85 ~~~~~l 90 (94)
T PF12862_consen 85 SWLANL 90 (94)
T ss_pred HHHHHH
Confidence 444443
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.72 E-value=0.0015 Score=40.87 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004811 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (729)
Q Consensus 330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (729)
+|++++++ +|....+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37888988 89999999999999999999999863
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.68 E-value=0.037 Score=44.58 Aligned_cols=83 Identities=17% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811 360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
....|+|..|++.+.+.++......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999887776543 123456688899999999999999999999999999999888877777766
Q ss_pred HHHH
Q 004811 439 GDTY 442 (729)
Q Consensus 439 a~~~ 442 (729)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.66 E-value=0.0049 Score=39.28 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
++.+||.+|..+|++++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999987754
No 288
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=1.2 Score=47.48 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004811 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (729)
..+++.|...++..+ |..++++|...+..+... .-+...+.....++.||..+.+.+.|.+++++|-+.. +
T Consensus 355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R 425 (872)
T ss_pred HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence 456788888899986 999999999999876432 2225568888999999999999999999999998775 3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 339 (729)
..+.. .+.+-.+....|.-++|+.+.........
T Consensus 426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 33322 44455666778889999998888776643
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.64 E-value=0.0036 Score=39.26 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+.+++.+|.++...|++++|+.+|++++.+.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 367899999999999999999999999998765
No 290
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=1.5 Score=46.86 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004811 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (729)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (729)
..+.+-|.-.++..+|..++++|...+.... .+............++.||..+.+.+.|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3455667888999999999999999987642 12222334666889999999999999999999999888
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+|...-....+-.+....+.-++|+.+..........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 6666666677777777889999999998887766544
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.50 E-value=0.0074 Score=38.43 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
++..||.+|...|+|++|+.+|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478899999999999999999999988776543
No 292
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.46 E-value=2.6 Score=48.90 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-------ChHHHHHHHHHhcccchhhccc
Q 004811 229 RELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-------QYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 229 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~ 301 (729)
.+++.... |++|+..|++....++.. .+-..+.+.+|.....+- .+.+|+.-|++.-.- +
T Consensus 483 ~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 549 (932)
T PRK13184 483 DAFLAEKL-YDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------V 549 (932)
T ss_pred HHHHhhHH-HHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------C
Confidence 33444443 666666666655544222 223456777777766532 355555555554322 3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (729)
..|.. |...|.+|..+|++++-+++|.-|++.+.+ +|.....
T Consensus 550 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 591 (932)
T PRK13184 550 GAPLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRL 591 (932)
T ss_pred CCchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHH
Confidence 33333 888999999999999999999999998644 5665543
No 293
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.27 E-value=0.0096 Score=37.30 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+++.+|.+|...|++++|. ..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~-~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEAL-EYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 57899999999999999999 999999999984
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.35 Score=46.78 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004811 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
-..-+.-....|++.+|...|..++...++. ..+...++.+|...|+.+.|...+...-.-.. ...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~ 202 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA 202 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence 3345556678899999999999999988766 35667899999999999999888765321110 000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (729)
...+.....++.+.....+... +++.+.. +|+...+.+.||..|...|+.++|.+.+-..+.. -.|..
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~ 270 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFE 270 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccc
Confidence 1111111122222222222222 2223333 7888899999999999999999999887665543 22222
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811 680 NPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
...+...|-.++...|..+.+.
T Consensus 271 ---d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 271 ---DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred ---CcHHHHHHHHHHHhcCCCCHHH
Confidence 2334556666666666544444
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.09 E-value=0.016 Score=36.30 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.+|+.+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999987
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.06 E-value=0.86 Score=45.92 Aligned_cols=170 Identities=18% Similarity=0.125 Sum_probs=116.7
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDP 347 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (729)
+......+++..|...+..+-... .......++.+|..- .+..+|..+|+.+.+.
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------- 106 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------- 106 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------
Confidence 334456678888998888877632 113466777777653 4678899888854433
Q ss_pred hHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhC-------CHHHHHHHHH
Q 004811 348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLV 416 (729)
Q Consensus 348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------~~~~A~~~~~ 416 (729)
....+.+.||.+|.. ..++.+|..+|.++.+...... ..+...++.+|..-. +...|+..|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 456788889998887 4489999999999987642211 234677777776642 2336888887
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811 417 LASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (729)
Q Consensus 417 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (729)
++.... ...+...+|.+|.. ..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 180 ~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 775422 44567788877755 34899999999999886 22 67777888 666655
No 297
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.02 E-value=2.2 Score=43.85 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Q 004811 511 VPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--SFKNAISK 587 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~ 587 (729)
.+....+.-+..-|.-+...|. -++|+.+++.+++..+-.. .+ -+... .+-...|.+|+. .+.+.+.+
T Consensus 373 iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec-~n~v~-~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 373 IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------EC-ENIVF-LFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HH-HHHHH-HHHHHHHHHHHhhhhHHHHHHH
Confidence 3455566667777888888887 7889999988887754331 11 11111 111122333322 22333332
Q ss_pred ---HHHhCCCC-ChHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004811 588 ---LRAIGERK-SAFFGVALNQM--GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (729)
Q Consensus 588 ---~~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (729)
....+-.. .......-+.+ |..++.+|+|.++.-+-.-..++ .| ...++..+|.++....+|++|
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHH
Confidence 22222111 01112333444 45567899999999888887777 77 567999999999999999999
Q ss_pred HHHHHHH
Q 004811 662 IEILEFV 668 (729)
Q Consensus 662 ~~~~~~a 668 (729)
..++...
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 9998754
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.93 E-value=1.4 Score=44.41 Aligned_cols=166 Identities=18% Similarity=0.160 Sum_probs=111.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
...+++..|...+.++-.. ..+ .....++.+|.. ..+..+|..+|..+.+. ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~ 110 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAE 110 (292)
T ss_pred cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHH
Confidence 3556677777777766552 112 556667777765 34678888888855443 2345
Q ss_pred HHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 004811 519 GLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-------NYSDSYDSFKNAISK 587 (729)
Q Consensus 519 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~ 587 (729)
+.+.||.+|.. ..++.+|..+|.++...-.. .. ......++.+|..-. +...|...|.++...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 67779998887 45899999999999876322 11 233566777776542 233677777777664
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811 588 LRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
. ...+...+|.+|.. ..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 2 34677888877765 34899999999999886 22 56778888 666665
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.83 E-value=0.59 Score=48.23 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=109.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHH
Q 004811 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA--DMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
..|....++..++.++..+|+...|.+.+++|+-.++... ++.......++. .+...-..
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~---~~~F~~~~~~~~~g~~rL~~~~--------------- 96 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF---HPSFSPFRSNLTSGNCRLDYRR--------------- 96 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HHHhhhhhcccccCccccCCcc---------------
Confidence 4677788999999999999999999999999998876554 333222111111 11111100
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
..+.....++......+.+.|-+..|+++.+-.+.+.+.. ++ ..++..+-....+.++|+--+..++..
T Consensus 97 ------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 97 ------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred ------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 1122345566667778888899999999998888886652 11 234445555666778887777776654
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHH
Q 004811 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSI---------------NEAVELFEEARSI 629 (729)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~ 629 (729)
....... .-...+...+.++.+++..++- +.|...+++|+..
T Consensus 166 ~~~~~~~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 166 LAKCYRN---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhh---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 4421100 0000123445667777777777 8999999999988
No 300
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.82 E-value=0.0091 Score=61.07 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 004811 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (729)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~ 684 (729)
.-+.-.+.-+.|+.|+..|.+|+++ +|..+..+.+.+.++...+++..|+.-+.+++++ +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3455566778899999999999999 9999988889999999999999999999999986 69999
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+|++-|......+++.+|+ ..|+....+.|+
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPN 104 (476)
T ss_pred heeeeccHHHHhHHHHHHHH-HHHHHhhhcCcC
Confidence 99999999999999999999 999999999887
No 301
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.78 E-value=4.2 Score=45.13 Aligned_cols=435 Identities=11% Similarity=-0.005 Sum_probs=205.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH-HHcCChHHHHHHHH
Q 004811 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY-CSLGQYNEAIPVLE 289 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~ 289 (729)
.+....++........+...+...|+ +++-...-.++.+++ ... |.++.-|.. ..++ ...++..++...|+
T Consensus 103 ~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~----pl~--~~lWl~Wl~-d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 103 EEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIA----PLP--PHLWLEWLK-DELSMTQSEERKEVEELFE 174 (881)
T ss_pred HHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc----CCC--hHHHHHHHH-HHHhhccCcchhHHHHHHH
Confidence 33444555566666777778888886 655444333333332 222 333333322 2222 23477888999999
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
+++.-... .......+......+..+...++++.-...|.+++...-..... .......+..+-..|...-..++-
T Consensus 175 kal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 175 KALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99865311 00001111112233334455677888889999998775433221 234455666666666666666777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--H-HHHHhCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHc
Q 004811 370 QKFCQMALDIHKDNGSPASLEEAADRRLMG--L-ICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSL 445 (729)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg--~-~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~ 445 (729)
+.++...+...-.. ......|.... . ......+++.|+..+.+.+..+... ...+.....|..+-......
T Consensus 251 ~a~~~~el~~~~D~-----~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~ 325 (881)
T KOG0128|consen 251 IALFVRELKQPLDE-----DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS 325 (881)
T ss_pred HHHHHHHHhccchh-----hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 77777766654111 00111122221 1 1122334444444443333222111 11222233344444445555
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004811 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (729)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (729)
|+.-.-...+++++.- .+.....|...+...-. ++-.+.+...+-+++.. .+.... +...+
T Consensus 326 G~p~ri~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~---------cp~tgd-L~~ra 387 (881)
T KOG0128|consen 326 GDPVRIQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS---------CPWTGD-LWKRA 387 (881)
T ss_pred CCchHHHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcC---------CchHHH-HHHHH
Confidence 6655555555555443 12223333333322211 11122222222222222 111111 11111
Q ss_pred HHHHhcch--HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811 525 SIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY-------MLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 525 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
.+.+..++ ...-...+.+++...- . +++....|+ ...+++.-.+.|+.|...+.......
T Consensus 388 llAleR~re~~~vI~~~l~~~ls~~~----------~-l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~ 456 (881)
T KOG0128|consen 388 LLALERNREEITVIVQNLEKDLSMTV----------E-LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQ 456 (881)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHH----------H-HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 11111111 1111122222222100 0 111111111 12244455556666666655544432
Q ss_pred ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811 596 SAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
.......+...|.++.. +++.+.|+.++...+.. ........|.....+-...|+...|..++++|+..
T Consensus 457 ~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~--- 526 (881)
T KOG0128|consen 457 LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ--- 526 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc---
Confidence 22244556666666554 46778887777766554 12333336777777778889999999988888754
Q ss_pred HcCCCChh-HHHHHHHHHHHHHHhCCHhHHH
Q 004811 675 KLGTANPD-VDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 675 ~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~ 704 (729)
...|+ ...++..+-.+....|.++...
T Consensus 527 ---~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 527 ---VVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred ---CcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 33444 4556666666777777777766
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.72 E-value=0.018 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++++.+|.++...|++++|+ ..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence 46889999999999999999 999999999985
No 303
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=3.1 Score=42.46 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=137.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
-.......+..+.++....++..|...+.+.+-...+ +........++..++.++.+-+..-.+..+.-.++.....
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 4455667778999999999999999999998776655 4456667788888888888888777777777777776655
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-----FGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
. ..+...+..-..++..+...|-.+.|+..+..++...-..+.-.... .+.++..-+..+ ...+.+.+.++++
T Consensus 346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 4 33444445556788999999999999999999988765443322110 011111111112 4456788888999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHH
Q 004811 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD---DAIEILEFVVG 670 (729)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 670 (729)
+|-.++.+..- +....++.+.+|..|-..|+.+ ++...|+++..
T Consensus 424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99888887654 6678889999999999999865 44445555543
No 304
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.58 E-value=0.017 Score=59.18 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
-.-+.-.+..++|+.|+..|.+|+++ .+..+..+.+.+.++.+.+++..|+.-+.+|++. +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34567778889999999999999997 2335667778889999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (729)
..+|+.-|.++...+++.+|...|+....+ .|+...+...+..+-
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN 116 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence 999999999999999999999999998876 466666666665553
No 305
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.54 E-value=2.4 Score=40.79 Aligned_cols=185 Identities=17% Similarity=0.168 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
+..+|.+....|+|++.+.++++++...... ...-.+.+..+|-. .|....+...+.......... +...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL--------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~ 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL--------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence 5678999999999999999999999882221 12223334444422 344445555554444433322 1111
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 004811 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE---RKSAFFGVALNQMGLACVQR-----Y-----SINEAVEL 622 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 622 (729)
.. .+..-|.. .=-++=......++.+.....- .........+-..|..|.-. | -.+.|...
T Consensus 75 ~~-----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 75 QV-----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 11 11111110 0012223344455555443211 11111222333345544321 1 24789999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHc
Q 004811 623 FEEARSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
|++|+.+......+.+|-......+.+..| .-+|+.++|+.+.++++.-....+
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence 999999999988889999998888888777 458999999999999987765444
No 306
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=4 Score=43.13 Aligned_cols=248 Identities=12% Similarity=-0.073 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
|..+......+.++...|+.+.|+..+..++.... ..-....++.+|.++..+.+|..|-..+.......
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des---- 333 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES---- 333 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh----
Confidence 33444556678888888998888998888887321 23345678899999999999999999988877762
Q ss_pred CCCChHHHHHHHHHHH-HHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 509 PGVPPEEIASGLTDVS-SIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
...-..|..++ .++.. .|+-+.|..+++....+....+...+.- .....-+.-+...+. -.+..
T Consensus 334 -----dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E-~f~~RKverf~~~~~-~~~~~ 406 (546)
T KOG3783|consen 334 -----DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE-KFIVRKVERFVKRGP-LNASI 406 (546)
T ss_pred -----hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh-HHHHHHHHHHhcccc-ccccc
Confidence 11122233333 33332 3355566666666555554432111111 111111111111111 00000
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
. .+.-+..++.++. ......+.. ++........-.+..+..--+..+|.++..+|+
T Consensus 407 -------------~-----la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~ 464 (546)
T KOG3783|consen 407 -------------L-----LASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD 464 (546)
T ss_pred -------------c-----ccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC
Confidence 0 0001111221111 111222222 221111111111223334466788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHhhccc
Q 004811 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR-VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~-~~~A~~~~l~~al~~~p~ 717 (729)
...|..+|..+++- +.....++--.+.+++.||.+|...|. ..++. +++.+|-+...+
T Consensus 465 ~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~-~~L~kAr~~~~d 523 (546)
T KOG3783|consen 465 SEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEAR-ALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHH-HHHHHHHhhccc
Confidence 99999999998865 222234444567899999999999999 99999 999999877654
No 307
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.33 E-value=4 Score=41.94 Aligned_cols=437 Identities=9% Similarity=-0.033 Sum_probs=216.3
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (729)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (729)
+.+...++|.+...|+.+...+-.++. +++-.+.|++...-+ |-...+|...-.--....+|.....+|.
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~pf---------p~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSPF---------PIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCCC---------ccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 344567899999999999998888886 888888877765432 3223333322222233477888888888
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHHcCC-H--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH-----
Q 004811 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-L--ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----- 361 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----- 361 (729)
+++.-.- .+..|... .-|.+.-+ . .++....-+|.+..-...+ -+|.....|...+..+.
T Consensus 101 rCL~k~l----------~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~ 168 (660)
T COG5107 101 RCLKKSL----------NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEEL 168 (660)
T ss_pred HHHhhhc----------cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhcccc
Confidence 8876431 11112211 11222111 0 0333333344333222111 13444444544444332
Q ss_pred ----HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------HHHHHHhC----CHHHHHHHHHHHHHHHHh
Q 004811 362 ----QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM---------GLICETKG----DHEAALEHLVLASMTMIA 424 (729)
Q Consensus 362 ----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l---------g~~~~~~g----~~~~A~~~~~~al~~~~~ 424 (729)
.+.+.+.-...|.+++..--.+.. ..|... ...-.-.| -|-.|...|++...+...
T Consensus 169 ~kwEeQqrid~iR~~Y~ral~tP~~nle-------klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 169 GKWEEQQRIDKIRNGYMRALQTPMGNLE-------KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG 241 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCccccHH-------HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc
Confidence 334455566666666643211110 011110 11111111 244555555554433221
Q ss_pred CCC-ChhHHHHHH---------HHHHHHHH-------cCC-HHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811 425 NDQ-DAEVASVDC---------SIGDTYLS-------LSR-YDEAG-FAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 425 ~~~-~~~~~~~~~---------~la~~~~~-------~g~-~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
... .+.....+. .+-.+-.. .|+ ..+-+ -.+++++.. -+....+|+.....+.
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--------~~~~~evw~dys~Y~~ 313 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--------FYYAEEVWFDYSEYLI 313 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHh
Confidence 110 111111111 11111111 112 12211 234555554 4666778888888888
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC------------CC
Q 004811 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP------------GQ 553 (729)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~ 553 (729)
..++-+.|+...++++... |. ....++.+|...++-+.-..+|+++.+...... ++
T Consensus 314 ~isd~q~al~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N 381 (660)
T COG5107 314 GISDKQKALKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNN 381 (660)
T ss_pred hccHHHHHHHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCC
Confidence 8888888888877776652 11 344566666666666555556665554332110 01
Q ss_pred CC-----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811 554 QS-----------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622 (729)
Q Consensus 554 ~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 622 (729)
.. .+..+++.+-..-.+..-.+.|...|-++-+. +-..+. ..++..+ .-+...|++.-|...
T Consensus 382 ~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----~~~~h~--vyi~~A~-~E~~~~~d~~ta~~i 454 (660)
T COG5107 382 FEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE----GIVGHH--VYIYCAF-IEYYATGDRATAYNI 454 (660)
T ss_pred ccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc----CCCCcc--eeeeHHH-HHHHhcCCcchHHHH
Confidence 10 01111222222223333455556666555432 211111 1111211 224567899999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (729)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~ 702 (729)
|+-.+.. .|+........-..+...++-+.|..+|+.++...+. ...-..|..+...-..-|+...
T Consensus 455 felGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 455 FELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred HHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHhhcchHH
Confidence 9998887 5665544455556677889999999999988865432 1223444455555555666666
Q ss_pred HHHHHHHHHHhhccc
Q 004811 703 RKAQSLETLLDANSR 717 (729)
Q Consensus 703 A~~~~l~~al~~~p~ 717 (729)
+. ..=+....+.|+
T Consensus 521 v~-sLe~rf~e~~pQ 534 (660)
T COG5107 521 VY-SLEERFRELVPQ 534 (660)
T ss_pred HH-hHHHHHHHHcCc
Confidence 65 444455555554
No 308
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.33 E-value=0.85 Score=47.08 Aligned_cols=162 Identities=15% Similarity=0.006 Sum_probs=117.3
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----c-----C---C--------CCCHhHHHHHH
Q 004811 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIG----A-----N---G--------KPSLELVMCLH 269 (729)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~----~-----~---~--------~~~~~~~~~~~ 269 (729)
+......+|-....+++++.++..+|+ +..|.++.++|+-.++.. . . + ..+.....+++
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 344557889999999999999999997 999999999999887743 1 0 0 11244566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhcccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004811 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (729)
.....+.+.|-+..|.++.+-.+.++ +. +|.. +++.+-....+.++|+--+..++.......+. .-..
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~ 176 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL 176 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence 88888899999999999999999986 33 4432 35555566667788877777777655421100 0001
Q ss_pred HHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHhc
Q 004811 349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN 383 (729)
Q Consensus 349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 383 (729)
.+...+.++.+++..++- +.|...+.+|+...|..
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 224566777788888887 89999999999988754
No 309
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.33 E-value=0.0061 Score=59.33 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=83.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~ 688 (729)
-.+..|.+++|++.|..++++ +|..+..+...+.++..+++...|+.-+..++.+ +|+.+.-+-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 345578899999999999999 9999999999999999999999999999999987 788888888
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 689 RLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.-+.....+|++++|. +.|+.+.+++-+
T Consensus 187 frg~A~rllg~~e~aa-~dl~~a~kld~d 214 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAA-HDLALACKLDYD 214 (377)
T ss_pred hhhHHHHHhhchHHHH-HHHHHHHhcccc
Confidence 8899999999999999 999999988765
No 310
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.14 E-value=3.5 Score=40.19 Aligned_cols=93 Identities=13% Similarity=-0.059 Sum_probs=75.1
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004811 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
..-...++++.+|+..+...... .....+...+|..|+..|++++|+.+|+.+...+...+-......++..+..|+.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 34456788888888888766542 3345567789999999999999999999998888877777778888899999999
Q ss_pred HcCCHHHHHHHHHHH
Q 004811 444 SLSRYDEAGFAYQKA 458 (729)
Q Consensus 444 ~~g~~~~A~~~~~~a 458 (729)
..|+.+..+.+.-+.
T Consensus 230 ~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 RLGDVEDYLTTSLEL 244 (247)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999998887765544
No 311
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.08 E-value=2.8 Score=42.72 Aligned_cols=148 Identities=8% Similarity=-0.002 Sum_probs=100.2
Q ss_pred CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811 426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
..+|....+|..+....-..-. .+.-+.+|++|++. +|.....+..+-.+..+..+.++.
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3466666677666655443322 34456677777776 667777777777777788888888
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-----------CcHHHHHH
Q 004811 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA 562 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~ 562 (729)
...+++++... ...+.+...|...-......-.+......|.+++.......... ..+..++.
T Consensus 85 ~~~we~~l~~~------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLFKN------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHHHC------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 88888888872 22334444444433333444568889999999988877543321 24556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 563 QMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
.+.......|..+.|+..++-.+++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8888889999999999999988886
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.03 E-value=0.034 Score=34.39 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
++++.+|.++...|++++|+..|+++++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46889999999999999999999999988764
No 313
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.99 E-value=0.013 Score=57.19 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=82.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+.-.+..|.++.|++.|..++.+ +|..+..+...+.++..+++...|+..|..++.+ +++.+.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---------n~Dsa~ 183 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---------NPDSAK 183 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc---------Cccccc
Confidence 34455678899999999999998 8999999999999999999999999999999998 566677
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811 519 GLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.|-..+.....+|+|.+|..++..+.++.
T Consensus 184 ~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 184 GYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 78888899999999999999999988764
No 314
>PRK14707 hypothetical protein; Provisional
Probab=94.95 E-value=6.9 Score=48.24 Aligned_cols=367 Identities=9% Similarity=0.001 Sum_probs=187.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004811 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (729)
-..+++++..+.+|.++..+-..+..+...+..+ +....+ -..++.++--+++|.+...+-.-++.+.........
T Consensus 834 AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~ 911 (2710)
T PRK14707 834 VQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPE 911 (2710)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHH
Confidence 3467888888888887777776666665544322 222222 234566666677777766666666666555443322
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (729)
...+..-..++.++..+.++.++-.+-.-+..+......++.....+ ..++.++-.+++|.+.-.+-.-+..+...+.
T Consensus 912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~ 991 (2710)
T PRK14707 912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV 991 (2710)
T ss_pred HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh
Confidence 32333344566666666666654443333334444444444333332 3466777777888776666555555554432
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
.+..-.....-..+++++..+.+|.++-.+-.-+..+...+. . .+.. ..--..++.++....+|.+.-.+-.-+.
T Consensus 992 ~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~ 1068 (2710)
T PRK14707 992 DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-N--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAAS 1068 (2710)
T ss_pred ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-c--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHH
Confidence 111111222334667777777777766655555555554431 1 1111 1122345556666666554433333333
Q ss_pred HHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811 545 KIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (729)
Q Consensus 545 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 623 (729)
.+......... ..+..-..++.++...-+|.+.-.+-.-++.+...++.........-...++.+.-...+|...-.+=
T Consensus 1069 aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr 1148 (2710)
T PRK14707 1069 ALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACE 1148 (2710)
T ss_pred HHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHH
Confidence 33332211111 00111234566677777777777777777777777655443333333334444444443433322222
Q ss_pred HHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 004811 624 EEARSILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (729)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~ 684 (729)
.-+..+..++.. +++... .-..++..+-...+|.+.-.+-+-++.+....-...+|...
T Consensus 1149 ~Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~ 1209 (2710)
T PRK14707 1149 SAIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQ 1209 (2710)
T ss_pred HHHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchh
Confidence 222333333222 222221 12355666666667766666666666666555555555443
No 315
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=5.1 Score=40.99 Aligned_cols=199 Identities=12% Similarity=-0.017 Sum_probs=139.5
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
+-.......+..+.++....++..|..++.+..-.+... ........++..++.++.+.+..-.+..+.-.++....+.
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey 346 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY 346 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence 344456778889999999999999999999877655433 2233456677788888888888778877777777766554
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHcCChHHHHHHH
Q 004811 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY------DAIGRLDDAIEIL 665 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~ 665 (729)
..+ ...+..-..++..+..+|..+.|+..+..++....-..+-+ +...+++-.++|+ ....+.+.+..++
T Consensus 347 ~ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L 422 (482)
T KOG4322|consen 347 SLD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYL 422 (482)
T ss_pred ccc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHH
Confidence 333 22345566788888899999999999999998766544422 1122222222222 2455778888888
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHH--HHHHHHHhhccc
Q 004811 666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA--QSLETLLDANSR 717 (729)
Q Consensus 666 ~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~--~~l~~al~~~p~ 717 (729)
+++-.++.++ ..|....++.+-+|..|...|+.++-.. ..|++++.--|.
T Consensus 423 ~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~ 474 (482)
T KOG4322|consen 423 DLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL 474 (482)
T ss_pred HHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC
Confidence 8888887765 5577789999999999999999875430 466776665543
No 316
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.86 E-value=4.1 Score=39.96 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=103.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
+..+.+.|++.-|..+..-.++.+.+.....+ .....+++.+......-+ +-..+..++++.. ...+.......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~----~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~ 91 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVD----EESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---S----HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHH
Confidence 34445555555555555555555544211111 122344555555443222 3456667777777 44344456678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNA-----------ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
.+..+|..|.+.|++.+|..+|-.. +..+...+.... ...........|...++...|...+...++
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e--~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE--ADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8889999999999999999887422 111112222221 223333344556677888888888877776
Q ss_pred HHHHhcCC-------CChhHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811 629 ILEQECGP-------YHPDTLGVYSNLAGTY---DAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 629 ~~~~~~~~-------~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (729)
.+... .| ..|.... +.+....+ .+.+ +...|....+.+...+. .+|.....+..+|.+|+...
T Consensus 170 ~~~~~-~p~~~~~~~~~~~~~P-llnF~~lLl~t~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 170 KLIES-HPKLENSDIEYPPSYP-LLNFLQLLLLTCERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHH----EEEEEEEEESS-H-HHHHHHHHHHHHHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred HHhcc-CcchhccccCCCCCCc-hHHHHHHHHHHHhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence 64332 11 0111111 23333333 3333 34667766666655443 24667777888888887654
Q ss_pred C
Q 004811 699 R 699 (729)
Q Consensus 699 ~ 699 (729)
.
T Consensus 243 ~ 243 (260)
T PF04190_consen 243 P 243 (260)
T ss_dssp S
T ss_pred C
Confidence 3
No 317
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.76 E-value=4.4 Score=39.47 Aligned_cols=187 Identities=14% Similarity=0.031 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CC-------HHHHHHHHHHHHHHHHhC--------------C
Q 004811 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---AS-------LEEAADRRLMGLICETKG--------------D 407 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~a~~~~~lg~~~~~~g--------------~ 407 (729)
+.+.+..+++..|+...|+.-+++=+....+..+. .. ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 34556688888999999999888877776555433 01 223344445555554332 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCh----------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 408 HEAALEHLVLASMTMIANDQDA----------------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
|..|-.+...-...+......| .....+................++.+.+|+..++..
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 2233332222222222221000 000111111111112234456788888998888776
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
.. ......+...+|..|+..|++++|+.+|+.+...+++. .-..-...++..+..++...|+.+..+.+.-+.
T Consensus 172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 52 45556677899999999999999999999998888762 234455677888889999999988877665443
No 318
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=5.4 Score=40.46 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=91.3
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 403 ETKGDHEAALEHLVLASMTMIANDQ---DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
+...++.+|...-...+.-....+. +...+.+|+.+..+|...|+...-...+...+... ..+.+....+...+.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence 3445666666655544322211111 23346677888888888888766666665554442 223345556677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
|-+.|...+.|+.|.....+..-- . .......+..++.+|.+..-+++|..|.+++-+|+...|..
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~p--e---~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYP--E---AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCc--c---ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 888888888888887766554311 0 11233567788889999999999999999999999887753
No 319
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=2 Score=41.33 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
.-++-++-+.+.++-....+-......++.++|..|.+.++.+.+.+++.+.+.-....+- ..+...+-..||.+|..
T Consensus 90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGD 167 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhcc
Confidence 3444555565555544444445667889999999999999999999999988876544432 33444555666766655
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+.-.++.++.....++. |.+....-..-...|.......++.+|-.++-.++..+...
T Consensus 168 ~~vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 168 RKVVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 54445544444444443 55555544444556667777788888888888777665443
No 320
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.72 E-value=7.5 Score=41.87 Aligned_cols=182 Identities=11% Similarity=0.022 Sum_probs=92.2
Q ss_pred HHHHHHHhcCHHHHHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811 356 LAEAHVQALQFSEAQKFCQM------ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
+|..+..+|+|.+|.++|.+ |++++.+. -.+.++.-+...|..++-....++-.........+.
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl----------RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL----------RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 44555555666666655543 23332221 133444445555555444444433322222222211
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.-|.++...|+.++|+... +-++++.+++ +......+..++..+.....+.-|-+.|.+.-..
T Consensus 708 -------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 708 -------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred -------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 1244555667766666542 3344443333 2333344555566566666666666555543222
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
-.+..++...++|++|..+.++--+.. ..+|+-.|..+....+|++|.+.|.+
T Consensus 777 -----------------ksiVqlHve~~~W~eAFalAe~hPe~~----------~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 777 -----------------KSLVQLHVETQRWDEAFALAEKHPEFK----------DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred -----------------HHHhhheeecccchHhHhhhhhCcccc----------ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 234456667788888766555432222 23455667777777788888777766
Q ss_pred HH
Q 004811 584 AI 585 (729)
Q Consensus 584 al 585 (729)
|-
T Consensus 830 AG 831 (1081)
T KOG1538|consen 830 AG 831 (1081)
T ss_pred hc
Confidence 53
No 321
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=5.7 Score=40.32 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=93.1
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
+...++.+|..+-+..+.-........-......+|+.+..+|...|+...-...+...+... .++.+....+.....
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence 345778888777666553211111111113345568888889999999777666666555442 233344455666677
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
|-..|...+.|+.|..+..+.. +|... .....+..++.+|.+..-+++|..|.+++.+|+...
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 7888888899999988876653 12221 223567888999999999999999999999887643
No 322
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.67 E-value=3.8 Score=43.49 Aligned_cols=178 Identities=11% Similarity=0.026 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHH
Q 004811 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-------EQAIKLLQKALKIY 547 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 547 (729)
.....||++++..++|+-|...|+.+..-+.. .......+.+.-..|.++...+.. ++...+++.|+..+
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~---Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN---DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh---chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 45567899999999999999999999887754 222333445555555555555532 46777888888877
Q ss_pred HhC----CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCCCCChHHHHHHHHHHHHH--HHcCCHHHH
Q 004811 548 NDA----PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL--RAIGERKSAFFGVALNQMGLAC--VQRYSINEA 619 (729)
Q Consensus 548 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A 619 (729)
... .........+....+.++...|.+.+|...+-+..... ..+.. ...+..+..+|.+| ........-
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~---~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP---FGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh---HhhHHHHHHHHHhhcccccCCCCcc
Confidence 772 12222334556677888888999888877776665542 11110 11344455555555 111000000
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
..- ....+--+..-|.-|...|+...|+.+|.+++.++.
T Consensus 363 ~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000 011122233446778999999999999999998874
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.57 E-value=0.2 Score=37.79 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
+...+..|..+|...+ .++|+..+.+|++... ..++...++-.+..+|+..|+|.+.+.+..+-+++.
T Consensus 6 ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888898886 8999999999998652 236678888889999999999999999887766664
No 324
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.50 E-value=6.2 Score=41.89 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH-------EAALEHLVLASMTMI 423 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 423 (729)
.....||+.++..++|+.|...|+.+.+-+.... .....+.++...|.+....+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 4567899999999999999999999887664433 2233455666666666666643 366667777766555
Q ss_pred hC-----CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHcCCHHHH
Q 004811 424 AN-----DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA---VASVFVRLADMY--NRTGKLRES 493 (729)
Q Consensus 424 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A 493 (729)
.. ........+....+.++...|.+.+|...+-+.....-. .... .+..+-.+|.+| ........-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 52 222344556667778888889988887776666554210 0122 445555556655 111000000
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+......+.-+..-|.-|...|+...|+.+|.+++..+...
T Consensus 363 ----------------~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 363 ----------------LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ----------------chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 00012234445556778899999999999999999998744
No 325
>PRK14707 hypothetical protein; Provisional
Probab=94.49 E-value=11 Score=46.61 Aligned_cols=384 Identities=10% Similarity=0.025 Sum_probs=190.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
.+++++..+.+|.+...+-.-+..+...+.. ++..... -..++.++--..+|.+...+-.-+..+...........
T Consensus 752 evANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr 829 (2710)
T PRK14707 752 QVATALNALSKWPDNQACAAAANTLAERQLR--EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLR 829 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHH
Confidence 4555555555554444444333333333221 1222111 13344444445555554444444444443332221121
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
.+..-..++.++..+.++..+..+-..+..+.......+.....+ ..++.++-.+++|.+...+-.-++.+...+..+
T Consensus 830 ~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d 909 (2710)
T PRK14707 830 EAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADE 909 (2710)
T ss_pred HhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC
Confidence 222234566666666777665555554544444444444333322 345667777778777666666666666655422
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
..-.....-..++.++..+.+|.++-.+-.-+..+...+. .+..-.....-..++.++-...+|.+.-.+-.-+..+..
T Consensus 910 ~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa-~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 910 PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS-DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc-cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 1222223345677777777877776555555555544431 111111122233456666666776665555554444444
Q ss_pred hCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 549 DAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 549 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
....... .....-..++.++....+|.++-.+-.-+..+...+........+.--..++.++-.+.+|.+.-.+-.-+.
T Consensus 989 rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~ 1068 (2710)
T PRK14707 989 RLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAAS 1068 (2710)
T ss_pred HHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHH
Confidence 3311111 001112356777777777776666666666665555333211112223345555555666655444444444
Q ss_pred HHHHHhcCCCChhHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811 628 SILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
.+...+.. ++.... .-..++.++...-+|.+.-.+-+.++.+...+....++........++.++....++.
T Consensus 1069 aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp 1142 (2710)
T PRK14707 1069 ALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWP 1142 (2710)
T ss_pred HHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCC
Confidence 44433322 222222 2245677777777787777777777777776655555544444445555555544443
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.48 E-value=0.2 Score=39.71 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+..+++.+.. +|+...+.+.+|..+...|++++|++.+-.++..-. ......+...|-.++...|.
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr------~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR------DYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T------TCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------cccccHHHHHHHHHHHHcCC
Confidence 4556677776 899999999999999999999999999888775311 11123445555555555665
Q ss_pred HhHHH
Q 004811 700 VRSRK 704 (729)
Q Consensus 700 ~~~A~ 704 (729)
-+.-.
T Consensus 74 ~~plv 78 (90)
T PF14561_consen 74 GDPLV 78 (90)
T ss_dssp T-HHH
T ss_pred CChHH
Confidence 44333
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.42 E-value=3.6 Score=41.92 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=94.2
Q ss_pred ChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004811 470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (729)
+|....+|..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 78888888888877655433 34556777788777 2222333444444445556667777
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------ChHHHHHHHHHH
Q 004811 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG 607 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la 607 (729)
..+++++...+.. ..+-..|...-......-.+......|.+++..+....... ......++..+.
T Consensus 86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 7777777765443 11112222222222334468899999999998877654332 223455677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 004811 608 LACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~ 629 (729)
....+.|-.+.|+..++..+++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHH
Confidence 8888999999999999999987
No 328
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.42 E-value=0.11 Score=33.16 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 478899999999999999999999999999887643
No 329
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=5.7 Score=39.09 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004811 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (729)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~ 404 (729)
++-++-+.+.++-.++.+|+ ....+++...|..|.+.|+-+.|++.+.+..+..-..+.. ++.......+|..|.
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~- 155 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYL- 155 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhc-
Confidence 44455666666666555443 4678899999999999999999999999988876655533 444445556666654
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
+.+-.-+..++|-.++...++....-..-...|.......+|.+|...|-.++..+.
T Consensus 156 --D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 156 --DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 455555566666667777776555444555567777778888888888888776654
No 330
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.28 E-value=5.9 Score=38.86 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=117.1
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (729)
.+++|++|++.+... +..+.+.|++.-|.+...-.++.+.+.. .+.......+++.+
T Consensus 2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 456777777766544 4556666777777776666666666543 22223344566666
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-----------HHHHHhCC
Q 004811 484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP 551 (729)
Q Consensus 484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~ 551 (729)
+...+.-+ +-..+..++++..+. +.........+..+|..+.+.|++.+|..+|-.+ +......
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~- 134 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK- 134 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence 66654333 355667777777622 3334455678899999999999999999887421 1111111
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----CC------CCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004811 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI----GE------RKSAFFGVALNQMGLACVQRYSINEAVE 621 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (729)
+.+.............|...++...|...+..-.+.+... .. ...+....++..+ .-++.++ ..
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl--~t~e~~~----~~ 208 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLL--LTCERDN----LP 208 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHH--HHHHHT-----HH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHH--HHHhcCc----HH
Confidence 3333333333444556778899999998888777663322 11 1112222222222 2223333 34
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
.|....+.+...... +|.....+..+|..|.....
T Consensus 209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---S
T ss_pred HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCCC
Confidence 555555554443322 56777788888888876543
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.21 E-value=0.12 Score=54.13 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
.|..+..+|+...|++++..|+...+. .....+.+||.+....|....|-.++.+++.+ ......
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl 677 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPL 677 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCch
Confidence 344556789999999999999876432 12345778999999999999999999999998 334445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.++.+|+.|..+.+.+.|++.|++|++.
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 7789999999999999999999999976
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.91 E-value=4.4 Score=36.01 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004811 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (729)
|.-|+..+.-..+-..|..++++. ..++.++|+.-|....+ ...+..+ ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~lek---tg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLEK---TGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHHh---cCCCcch--HHH
Confidence 334556666666666666666663 33556667666654332 2233333 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
....+.+....|+...|+..|.++-.-. ..|. ....+...-+.++...|-|+.-.. ..+.+.++.+|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~ 164 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence 5678899999999999999998765421 1111 112344445666777787766443 33444556688
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
-...+...||..-.+.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888899999999999999999999998875
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.78 E-value=0.7 Score=34.90 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
...-|.-++...+..+|+..++++++.... .++...++-.+..+|...|+|.+++.+..+-+++.....+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445566677888999999999999988533 4677788888999999999999999998888888766544
No 334
>PRK10941 hypothetical protein; Provisional
Probab=93.78 E-value=0.75 Score=45.04 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
....+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+ |
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 4567788889999999999999999999999 78888888999999999999999999999999876 6
Q ss_pred CChhHHHHHHHHHH
Q 004811 679 ANPDVDDEKRRLAE 692 (729)
Q Consensus 679 ~~p~~~~~~~~La~ 692 (729)
++|........+..
T Consensus 247 ~dp~a~~ik~ql~~ 260 (269)
T PRK10941 247 EDPISEMIRAQIHS 260 (269)
T ss_pred CchhHHHHHHHHHH
Confidence 66665555544443
No 335
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.72 E-value=0.57 Score=38.20 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=66.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHHH
Q 004811 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG----Q-------LENSLMCYTTGLEVQK 339 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~-------~~~A~~~~~~al~~~~ 339 (729)
++.-++..|++-+|+++.+..+.... .... .+..+..-|.++..+. + .-.++++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~----~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG----EDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc----CCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc--
Confidence 46678999999999999999987752 1111 1124666677775543 2 23566777777776
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 74 ------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 ------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6777888888888776667777777777777654
No 336
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=4.2 Score=39.96 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
+.+.++-...+.-......++.+.|..|++.|+-+.|++.+.+..+..-..+ ...+.......+|.+|... +--.
T Consensus 87 ld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~---~lV~ 161 (393)
T KOG0687|consen 87 LDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH---DLVT 161 (393)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH---HHHH
Confidence 3333333333333556778899999999999999999999988776544433 1334455556666666544 4444
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+..++|-.++++ |.+....-..-..-|.......++.+|-.+|-.++..+...
T Consensus 162 ~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 162 ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 445555555555 55555444444455666677788888888888777665443
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.62 E-value=1.4 Score=38.88 Aligned_cols=86 Identities=19% Similarity=0.092 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (729)
...+..+..+-...++.+++..++....-+ .|.....-..-|.++...|+|.+|+.+|+.+.. .
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~ 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence 345566666777788999998888877777 788888888999999999999999999998653 3
Q ss_pred ChhHHHHHHHHHHHHHHhCCHh
Q 004811 680 NPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~ 701 (729)
.|....+.-.++.++..+|+..
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH
Confidence 5666777777888888887754
No 338
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=7.8 Score=37.43 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
.-++-++-+.+.++......+ ....+.++.++|..|.+.++.+.+.+++.+.+......+...+...+...+|.+|..
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 345556666666655544442 345578899999999999999999999999887777777777777777788888866
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
+.-..+.++.....++. |.+....-..-...|.......+|.+|-.++-..+..+..
T Consensus 168 ~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 168 RKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 65555555544444433 2233333333334455666677888998888888877654
No 339
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.35 E-value=8 Score=37.27 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
+..+|.+....|+|++.+.++.+++.. +......-...+..+|-. .|....+...+.......... . .
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~---~-~ 72 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK---G-N 72 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---T-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc---c-h
Confidence 456788888999999999999888877 122223333444444422 344445555554444332221 0 1
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC----CcHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004811 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ----STVAGIEAQMGVMYYML-----G-----NYSDSYD 579 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 579 (729)
+.. ..+..-|. ..=-++=...+..++.+.....-.. ......+-..|..|... | -.+.|..
T Consensus 73 ~~~----~~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 73 EKQ----VKLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 111 11111111 1111223344455555544431111 11112222334444321 1 2378999
Q ss_pred HHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 580 SFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 580 ~~~~al~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.|++|+.+... +.+.+|...+.+++.-...|...|+.++|+.+.++|+.....
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999998 455555445555554444445689999999999999887554
No 340
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.16 E-value=12 Score=38.68 Aligned_cols=233 Identities=11% Similarity=0.086 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
+..|+.....+...++-+.|+...++++...+ . ..+.++.+|....+-+....+|+++.+.....+..
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----s-------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~ 369 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSP-----S-------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSM 369 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----c-------hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhh
Confidence 55566666667778899999999999887651 1 36678888888888888888898887665432211
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 424 (729)
.+.+.. -...|+++...+++-+-.... ..++..+-..-.+..-.+.|...|-++.+.- .
T Consensus 370 ~~s~~~---------s~~D~N~e~~~Ell~kr~~k~-----------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-~ 428 (660)
T COG5107 370 GESESA---------SKVDNNFEYSKELLLKRINKL-----------TFVFCVHLNYVLRKRGLEAARKLFIKLRKEG-I 428 (660)
T ss_pred hhhhhh---------ccccCCccccHHHHHHHHhhh-----------hhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-C
Confidence 110000 001233322222221111100 1123333333344445666777776664321 1
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.+.+.. +++.+ .-|...|++.-|...|+-.+.. .++........-..+...++-..|..+|+.++...
T Consensus 429 ~~h~vy---i~~A~-~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 429 VGHHVY---IYCAF-IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred CCccee---eeHHH-HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 111111 11111 2345678999999999888876 45555555555666778899999999999888775
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
++. ..-.+|..+...-..-|+...+..+-++.....|+
T Consensus 497 ~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 497 EKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 441 22344555555555566666666665555555443
No 341
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.12 E-value=1.2 Score=36.30 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=58.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----CHH-------HHHHHHHHHHHHHHHhc
Q 004811 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----RYD-------EAGFAYQKALTAFKTNK 466 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~-------~A~~~~~~al~~~~~~~ 466 (729)
.+.-++..|++-+|++..+..+... +........+...|.++..+. +.+ .+++.|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h---~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH---GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc---cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence 4567889999999999999877543 233332355566677765443 333 344455555544
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.|..+..++.+|.-+...--|+++..-.++++.+
T Consensus 74 ---sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 ---SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6767777777776655555566666666655544
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.00 E-value=3.1 Score=40.22 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (729)
..+...+..|...|.+.+|+++.++++++ +|-....+..|..++..+|+--.|+..|++.....++-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 45666788899999999999999999999 9999999999999999999999999999999999888888665
Q ss_pred hhHHHHH
Q 004811 681 PDVDDEK 687 (729)
Q Consensus 681 p~~~~~~ 687 (729)
.+...-|
T Consensus 352 ddsieew 358 (361)
T COG3947 352 DDSIEEW 358 (361)
T ss_pred chhHHHH
Confidence 5554444
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.84 E-value=0.16 Score=30.61 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++..+|.++...|++++|. ..++.+++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence 46788999999999999999 999999998874
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.74 E-value=2.6 Score=41.21 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
...++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578889999999999999999999999999 99999999999999999999999999999999887777775
Q ss_pred CChhHH
Q 004811 679 ANPDVD 684 (729)
Q Consensus 679 ~~p~~~ 684 (729)
......
T Consensus 224 ~P~~~~ 229 (280)
T COG3629 224 DPAPEL 229 (280)
T ss_pred CccHHH
Confidence 544433
No 345
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.53 E-value=0.39 Score=30.77 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.++..||.+-+..++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999777654
No 346
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.52 E-value=1.6 Score=38.42 Aligned_cols=89 Identities=8% Similarity=-0.033 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.......+..+..+-...++.+++...+.-..-+ .|.....-..-|.++...|+|.+|+.+|+.+.+-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---- 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---- 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence 3444556667777777888888888877755554 6888888888899999999999999998886544
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchH
Q 004811 508 VPGVPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
.+....+--.++.++..+|+.
T Consensus 74 -----~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 -----APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred -----CCCChHHHHHHHHHHHHcCCh
Confidence 233344455567777777764
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.44 E-value=4.8 Score=37.01 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=59.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (729)
.++..-.-+.|+..|-++. .......+...+.+|..|. .-+.++|+.++.+++++... ++...+.++..|
T Consensus 115 y~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sL 184 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSL 184 (203)
T ss_pred HHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHH
Confidence 3444445566777665442 1223345667778887776 67899999999999998533 234567889999
Q ss_pred HHHHHHcCCHHHHH
Q 004811 481 ADMYNRTGKLRESK 494 (729)
Q Consensus 481 a~~~~~~g~~~~A~ 494 (729)
+.++...|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999998874
No 348
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=92.31 E-value=11 Score=36.26 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004811 477 FVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
+..+|.+..+.++|++.+.+..++++... ..+ ...-.+.|..+|-. .|....+...+.. ++......+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch
Confidence 34578888999999999999999887632 111 11223334444432 3555555555554 22211111211
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHHH-----cCC-----HHHHHH
Q 004811 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK---SAFFGVALNQMGLACVQ-----RYS-----INEAVE 621 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 621 (729)
... .+..-|.. .=-++-..+....+.+.....-+. +......+-..|..|.- .|+ .+.|..
T Consensus 76 ~~~-----~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHV-----ASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 110 11111110 012233445556666655432211 11122233334444432 222 568999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Q 004811 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 673 (729)
.|+.|+++......+.||-......+.+.+|. -+++.++|..+.++++.-.-
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999888788889988888788777665 46999999988888876543
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.29 E-value=0.95 Score=31.60 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
.+++.+|..+.+.|+|++|..+.+.++++ .|++..+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHH
Confidence 36778999999999999999999999999 78777655433
No 350
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.96 E-value=3.5 Score=41.84 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004811 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (729)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (729)
.++..+|..|...|+++.|++.|-++-..+.. .......+.++-.+-...|+|.....+..+|............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 46889999999999999999999998777654 3567788888888889999998888888777655211000000
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004811 389 LEEAADRRLMGLICETKGDHEAALEHLVLA 418 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 418 (729)
...+.+...-|.+...+++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000123334455555666777777777544
No 351
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.95 E-value=0.24 Score=45.67 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=54.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
......|+.+.|.+.|.+++.+ -|+....|+++|....+.|+++.|. ..|++.++++|+
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcc
Confidence 3456778999999999999987 5999999999999999999999999 999999999998
No 352
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.90 E-value=1.2 Score=31.10 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (729)
+.++.+|..+.++|+|++|..+.+.++++ .|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 36788999999999999999999999988 5666655443
No 353
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.28 E-value=2.2 Score=44.25 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
++..|.++++-+|+|..|++.++.. ++.....-...+...+.+++.+|.+|..+++|.+|+..|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999998753 333222222334456677999999999999999999999998876544
No 354
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.26 E-value=4.5 Score=41.15 Aligned_cols=106 Identities=7% Similarity=-0.029 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC---ch-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD---PR-------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
.-|..++++++|..|..-|..+|+++.+...-.. +. ...+...|..||...++.+.|+....+.+.+.|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456677888888888888888888766432222 11 1224567889999999999999999999988877
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
... -+...|.++..+.+|.+|...+--+.-++...+
T Consensus 261 ~fr--------nHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 261 YFR--------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred hhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 653 367778888999999999887766655544444
No 355
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.17 E-value=3.2 Score=42.17 Aligned_cols=101 Identities=9% Similarity=0.051 Sum_probs=78.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
-|..++++++|..|..-|..+++++.+...... .....+-..|..||+.+++.+.|+....+.+.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 355677888888888888888888765321111 112334567889999999999999999999988
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|....-+...|.|+..+.+|.+|..-+--+.-++
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89888888999999999999999988776665444
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.09 E-value=6.4 Score=36.26 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (729)
-++|...|-++- +...-+.+...+.||..|. ..+.++|+.++.+++++.. +++.-+++++..|+.++.
T Consensus 122 d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 122 DQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQ 189 (203)
T ss_pred cHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHH
Confidence 356665555432 2223455667888888776 6788999999999998752 333556888999999999
Q ss_pred HhCCHhHHH
Q 004811 696 EAGRVRSRK 704 (729)
Q Consensus 696 ~~g~~~~A~ 704 (729)
.+|+++.|.
T Consensus 190 ~~~~~e~AY 198 (203)
T PF11207_consen 190 KLKNYEQAY 198 (203)
T ss_pred Hhcchhhhh
Confidence 999999886
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.97 E-value=4.1 Score=32.31 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
+..+++.+.. +|....+.+.+|..+...|++++|++.+-.++...+...+
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 3455666666 7899999999999999999999999999999888766543
No 358
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=23 Score=37.97 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=108.0
Q ss_pred cCChHHHHHHHHHhcccchhh----ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--------
Q 004811 278 LGQYNEAIPVLEQSIEIPVIE----EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-------- 345 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 345 (729)
...|++|...|.-+....... .-..+ +.-+..+..++.++..+|+.+-|....+++|-.....+.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ss-PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISS-PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccC-CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 455788888888777654210 00111 23456689999999999999999999999988776654321
Q ss_pred -----Cch---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811 346 -----DPR---VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 346 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
.|. ...+++..-..+.+.|-+..|.++++-.+.+.+..... .+++.+-....+..+|+=-++.++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl------~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL------GILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch------hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 122 22233444455667899999999999999988764321 2344444444555666666665554
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004811 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTA 461 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 461 (729)
.. ........|..... ..+|..|..... -..|...+.+|+.+
T Consensus 404 ~e-~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 404 PE-NMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HH-hhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 31 11222223333322 345666666555 56788888888887
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.79 E-value=32 Score=38.64 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
......+....|.-....|++++|+.+|.-|
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445566667777777788888877776543
No 360
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.77 E-value=16 Score=35.16 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811 353 CRYLAEAHVQALQFSEAQKFCQMALDIH-KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
+..+|.+..+.++|++.+.+.+++++.. +.... ..-.+.+..+|- ..|....+...+......-...+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 4567888888999999999999988752 21211 122455555553 346666666665432111111111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHc-----CC-----HHHHHHHH
Q 004811 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH---PAVASVFVRLADMYNRT-----GK-----LRESKSYC 497 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~ 497 (729)
. .+..-|. ..=-++-...+...+.+.....-+.. ......+-..|..|... |+ .+.|...|
T Consensus 78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1 1111111 11123445566777777665543321 22223333445555432 22 45889999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHH
Q 004811 498 ENALRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 547 (729)
+.|+++....++.. +|.......+.+.. |.-+++.++|..+.++|+.-.
T Consensus 152 ~~A~e~a~~~L~pt-~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 152 KSAQDIALAELPPT-HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999987755444 44444444444444 455799999988877776654
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.70 E-value=0.34 Score=29.01 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.++..+|.++...++++.|...+++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678899999999999999999999987654
No 362
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.42 E-value=13 Score=33.27 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=86.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHH
Q 004811 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNL 648 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l 648 (729)
.+..++|+..|...-+ .+-. .+...+....|.+..+.|+...|+.+|.++-... ..|... .+...-
T Consensus 71 ~~k~d~Alaaf~~lek----tg~g--~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEK----TGYG--SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHh----cCCC--cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHH
Confidence 3456677766654432 2221 2234677888999999999999999999876531 123322 244555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+.++...|-|++-. ...+.+.++.+|....+...||..-.+.|++.+|. ..|.++..
T Consensus 139 a~lLvD~gsy~dV~-------srvepLa~d~n~mR~sArEALglAa~kagd~a~A~-~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVS-------SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK-SWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHH-------HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH-HHHHHHHc
Confidence 66677778776544 34444556888999999999999999999999999 99988776
No 363
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.38 E-value=8.8 Score=39.33 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc----CCCCCHhHHHHHHHHHHHHHHcCC---hHHHHHHHHHhccc
Q 004811 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGA----NGKPSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEI 294 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 294 (729)
..+...|+.++.... |.+|+.++..|-+.|-.+. +.-+ +.+..-..+-+||+.+.+ ...|..-+..+-+-
T Consensus 164 lg~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~VD--NyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 164 LGLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELVD--NYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhhc--chhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 345778888998875 9999999998888775542 1111 223334456777887765 34555555444443
Q ss_pred chhhccc-----------cchH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 295 PVIEEGQ-----------EHAL--AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 295 ~~~~~~~-----------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
+...+|. ..|. ..+..+..-|.+.+++|+-++|.++++.+......
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3322222 2221 23344566688888888888888888887766554
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.20 E-value=9.2 Score=40.73 Aligned_cols=127 Identities=20% Similarity=0.152 Sum_probs=71.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004811 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV-GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (729)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (729)
.....++++++....... ++. |.. ..-...++..+.++|..+.|+.+.+.-- ..
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll--------~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------------~r 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLL--------PNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------------HR 324 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTG--------GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------------HH
T ss_pred HHHHcCChhhhhhhhhhh-hhc--------ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------------HH
Confidence 344578888877666311 111 111 2335667777888888888877653321 12
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
+ .+....|+++.|.+...+ ......|..||.....+|+++-|..+|+++-+.
T Consensus 325 F---eLAl~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-------------- 376 (443)
T PF04053_consen 325 F---ELALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF-------------- 376 (443)
T ss_dssp H---HHHHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------
T ss_pred h---HHHHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------
Confidence 2 334577888888776532 223357888999999999999999988876443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 004811 476 VFVRLADMYNRTGKLRESKSYCE 498 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~ 498 (729)
..|..+|...|+.+.=.++..
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHH
T ss_pred --cccHHHHHHhCCHHHHHHHHH
Confidence 345566777777654433333
No 365
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.17 E-value=20 Score=35.29 Aligned_cols=111 Identities=10% Similarity=-0.013 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
....+...||.+|...++|..|-..+.-. .........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 45667889999999999999988776432 22211111122334567888999999999999999999988655554444
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (729)
.......-...|+++-..++|-+|...|.+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344444455677777777777766665443
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.89 E-value=5.4 Score=42.46 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=87.4
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004811 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (729)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (729)
...++++++..+... -++.|... ......++..+..+|-++.|+.... ++ ...+ .
T Consensus 272 v~~~d~~~v~~~i~~-~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~-----------D~---~~rF---e 326 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA-SNLLPNIP-------KDQGQSIARFLEKKGYPELALQFVT-----------DP---DHRF---E 326 (443)
T ss_dssp HHTT-HHH-----HH-HHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HHHH---H
T ss_pred HHcCChhhhhhhhhh-hhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcC-----------Ch---HHHh---H
Confidence 346788887666531 12222221 1236678888899999999987653 22 1222 3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
+..+.|+++.|.+..++ ......|..||......|+++-|..+|+++-..
T Consensus 327 LAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------- 376 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------- 376 (443)
T ss_dssp HHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------------
T ss_pred HHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------------
Confidence 45678998888765432 224468999999999999999999999886433
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
..|..+|...|+.+.=.++. .+.... +. ++..-.+++..|+.++.++.+.++
T Consensus 377 ~~L~lLy~~~g~~~~L~kl~----~~a~~~-~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 SGLLLLYSSTGDREKLSKLA----KIAEER-GD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHH----HHHHHT-T--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cccHHHHHHhCCHHHHHHHH----HHHHHc-cC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34566777778764433333 333222 11 122234455667777776666554
No 367
>PRK10941 hypothetical protein; Provisional
Probab=89.61 E-value=2 Score=42.18 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+.+|-.+|.+.++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|. ..|+..++..|+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~ 247 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCC
Confidence 36678888999999999999999999987 5777778888999999999999999 999999999998
No 368
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.55 E-value=13 Score=33.41 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHH
Q 004811 349 VGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 349 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~ 422 (729)
.++....|+..+. .+.+|++|...| ..+-+.... +...+.+|..++ ..+++..|++.+..+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~-------K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-- 101 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVF-------KKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-- 101 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-------HhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence 4455666665443 233455555444 443332221 344566665554 34578899999987753
Q ss_pred HhCCCChhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----------
Q 004811 423 IANDQDAEVASVDCSIGDTYLSL-----S--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN---------- 485 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------- 485 (729)
.....+...+|.++..- + +..+|++++.++-++ ....+.+.|...|.
T Consensus 102 ------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~a 165 (248)
T KOG4014|consen 102 ------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNA 165 (248)
T ss_pred ------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccC
Confidence 33345556677666532 2 367888888888765 11223333333333
Q ss_pred --------------HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHH
Q 004811 486 --------------RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIY 547 (729)
Q Consensus 486 --------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 547 (729)
...+.+.|..+..+|-++ ....+..++.+.|.. -.+.++|..+-.+|.++.
T Consensus 166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 166 PGEGKPLDRAELGSLSKDMDKALQFAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 334556666666555555 234556666666653 236778888888888877
Q ss_pred HhC
Q 004811 548 NDA 550 (729)
Q Consensus 548 ~~~ 550 (729)
...
T Consensus 235 ~e~ 237 (248)
T KOG4014|consen 235 EEL 237 (248)
T ss_pred HHH
Confidence 654
No 369
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.49 E-value=0.91 Score=43.86 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004811 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~ 685 (729)
.|.-..+.|+.++|..+|+.|+.+ .|...+++..+|.+.....+.-+|-.+|-+|+.+ +|.+..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence 344456789999999999999999 8888899999999999999999999999999976 455555
Q ss_pred HHHHHH
Q 004811 686 EKRRLA 691 (729)
Q Consensus 686 ~~~~La 691 (729)
++.+.+
T Consensus 186 ALvnR~ 191 (472)
T KOG3824|consen 186 ALVNRA 191 (472)
T ss_pred HHhhhh
Confidence 554433
No 370
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.37 E-value=5.5 Score=34.57 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (729)
+..+..+-...++++++..++...--+ .|....+-..-|.++...|+|.+|+..|+...+- .+.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~~ 76 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AGA 76 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CCC
Confidence 334444445588899988888777666 7888888888999999999999999999987642 334
Q ss_pred HHHHHHHHHHHHHHhCCHh
Q 004811 683 VDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~ 701 (729)
.....-.++.++..+|+..
T Consensus 77 ~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 77 PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred chHHHHHHHHHHHhcCChH
Confidence 4555566777777777654
No 371
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.34 E-value=42 Score=37.76 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHHH
Q 004811 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL---ICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~ 422 (729)
++.....+..|-.++...|++++-...-.++.++.|-.. ..|..... .....++-..+...|++++.-.
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~--------~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP--------HLWLEWLKDELSMTQSEERKEVEELFEKALGDY 180 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence 455556677777888888998887776666666665432 11222211 1122367777888888886432
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
.........+......+..+...++++.-...|.+++...-..... -......+..+-..|...-..++-+.++...+.
T Consensus 181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2222222333333334444556678888889999988764333211 223344555555555555555666666666655
Q ss_pred H
Q 004811 503 I 503 (729)
Q Consensus 503 ~ 503 (729)
.
T Consensus 260 ~ 260 (881)
T KOG0128|consen 260 Q 260 (881)
T ss_pred c
Confidence 4
No 372
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.34 E-value=3 Score=31.46 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (729)
.+..+...|..+-..|+ +.+|+.+|++|++++.+.....|+......+..
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 46677888988999997 999999999999999988776666444433433
No 373
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.30 E-value=28 Score=35.66 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=78.8
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
+.+......-.++..+|..|...|+++.|++.|-++...+.. .......+.++-.+-...|+|..-..+..+|..
T Consensus 141 K~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 141 KDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred hcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 333334555678889999999999999999999998887654 355677888888888899999888888877766
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
..... ..........+...-|.+...+++|..|..+|-.+.
T Consensus 216 t~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 216 TPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred Cchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 52000 000000112233444555556668888888876543
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=88.95 E-value=8.4 Score=32.87 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
+.-..-..++++++..+...-.-.+++....+|...+.... .+...|...... +.....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 55666678899999988664323445566666666555332 666777655443 3334457788899999
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004811 568 YYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al 585 (729)
+...|++++|.+.|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998765
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.52 E-value=0.66 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 004811 267 CLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
++..+|.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998863
No 376
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.35 E-value=2.9 Score=43.81 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=78.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc---CChHHHHHHHHHhc
Q 004811 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---GQYNEAIPVLEQSI 292 (729)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al 292 (729)
.-|+.....+..|+-.+..+. ...|+..|.+++... |....+|.+.+.++++. |+.-.|+.....|+
T Consensus 369 eL~e~ie~~~~egnd~ly~~~-~~~~i~~~s~a~q~~---------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al 438 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESI-VSGAISHYSRAIQYV---------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL 438 (758)
T ss_pred hchHHHHHHHhhccchhhhHH-HHHHHHHHHHHhhhc---------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence 346677777777777777776 888999999988765 44577788888888764 45566777777888
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
++. .....+++.|+.++..++++.+|+.+...+...
T Consensus 439 rln---------~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 439 RLN---------PSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred cCC---------hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 775 345667999999999999999999987765544
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.16 E-value=0.63 Score=26.87 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367889999999999999999876
No 378
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.08 E-value=29 Score=34.29 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
....+.+...||.+|...++|..|-..+.-. +...|. .......+..+|.+|++.++..+|..+..++-=+.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 3456777889999999999999887665421 111121 12345667899999999999999999998875443
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
... .++......-.-.|+++-..++|-+|...|-+..
T Consensus 175 a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 175 AES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred hcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222222222334566666677777766665543
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.69 E-value=7.7 Score=32.98 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811 641 TLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.....+++|+++....+. .+.+.+++..+. ..+| ...+..+.||.-+.+.++|+.++ .+++.+++..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence 345788999999876654 445555555443 2344 44677889999999999999999 99999999998
Q ss_pred c
Q 004811 717 R 717 (729)
Q Consensus 717 ~ 717 (729)
+
T Consensus 103 ~ 103 (149)
T KOG3364|consen 103 N 103 (149)
T ss_pred C
Confidence 6
No 380
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.55 E-value=8.2 Score=37.87 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.+.++..++..+...|+++.++..+++.+.. +|..-.+|..+-..|...|+...|+..|++.-.......+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 4556888999999999999999999999998 8999999999999999999999999999998885544443
No 381
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.45 E-value=81 Score=38.79 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----C--------------------
Q 004811 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----R-------------------- 447 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~-------------------- 447 (729)
+.....+|.++...|.+.+|+.+|..|+...+..++....+.++-.++.+....+ +
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 4557789999999999999999999999999999988888777776655442211 0
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHhcC---CCCh--hHHHHHHHHHHHHHHcC--
Q 004811 448 --------------------------------YDEAGFAYQKALTAFKTNKG---ENHP--AVASVFVRLADMYNRTG-- 488 (729)
Q Consensus 448 --------------------------------~~~A~~~~~~al~~~~~~~~---~~~~--~~~~~~~~la~~~~~~g-- 488 (729)
...-...+++++.++.+... +..| -...+...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 11122345555555554431 1112 23456667777777776
Q ss_pred ------------------CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.-.++..++.+++.+.-. .-...+...++..+|.+|...|-..++.-+++.++...-.
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~---~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK---DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh---hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 677777888888776433 2235667888999999999999888887777777766543
No 382
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=34 Score=34.14 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=69.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
.+..+.++.++|++++++..........+.........+|.++...|+..++.+.+...-.......+- .+.....++.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~ 161 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYS 161 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHH
Confidence 344566799999999999988877777666778888899999999999999999998887766555432 2323444555
Q ss_pred HHH-HHHHcCCHHHHHHH
Q 004811 480 LAD-MYNRTGKLRESKSY 496 (729)
Q Consensus 480 la~-~~~~~g~~~~A~~~ 496 (729)
++. .|...|++...-..
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 544 45557777654433
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.06 E-value=45 Score=35.36 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
+..+-.++...-.+.-....+.+.+.+ ...-.++..++.+|... ..++-...+++.++.. -
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------f 129 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------F 129 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------c
Confidence 334445555555566667778888876 34457888999999988 4566677777777762 2
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
..+..-..|+..|.. ++...+..+|.+++...-.. .....+-.+|..+-.. --.+.+.- +....++....+..
T Consensus 130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~f---l~l~~kiqt~lg~~ 202 (711)
T COG1747 130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFF---LRLQKKIQTKLGEG 202 (711)
T ss_pred hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHH---HHHHHHHHHhhccc
Confidence 223444567777766 88899999999998765432 1112222333322221 11223322 22222332333322
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--------------------
Q 004811 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-------------------- 654 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------------------- 654 (729)
. ...++..+-.-|....++.+|++.+.-.++. +.....+.-++...+..
T Consensus 203 ~---~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--------d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~ 271 (711)
T COG1747 203 R---GSVLMQDVYKKYSENENWTEAIRILKHILEH--------DEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQS 271 (711)
T ss_pred h---HHHHHHHHHHHhccccCHHHHHHHHHHHhhh--------cchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhc
Confidence 1 1233444445566778999999999877776 33333344444433333
Q ss_pred cCChHHHHHHHHHHHHH
Q 004811 655 IGRLDDAIEILEFVVGI 671 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~ 671 (729)
-.++.+++.-|++.+..
T Consensus 272 ~rnf~~~l~dFek~m~f 288 (711)
T COG1747 272 GRNFFEALNDFEKLMHF 288 (711)
T ss_pred cccHHHHHHHHHHHhee
Confidence 34566677777666543
No 384
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.96 E-value=6.4 Score=34.20 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
....+..+...-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+..|+...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3344455555555688888887777654444 6877888888899999999999999988887654
Q ss_pred CChHHHHHHHHHHHHHHHhcchH
Q 004811 511 VPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
.+......-.++.++..+|+.
T Consensus 74 --~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 --AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred --CCCchHHHHHHHHHHHhcCCh
Confidence 112233344566666666664
No 385
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=86.93 E-value=87 Score=38.56 Aligned_cols=153 Identities=11% Similarity=0.003 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc----------------------
Q 004811 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM---------------------- 530 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------------------- 530 (729)
..+....+|.++...|++.+|+..|.+|+...+. ..|.-..+.++-.++.+..-.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~---~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS---SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh---cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 4566678899999999999999999999999887 445555566655554332211
Q ss_pred -----------------------------------------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004811 531 -----------------------------------------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (729)
Q Consensus 531 -----------------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (729)
..+++|+.+|.++.....+. .......++...++.++.
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~-~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY-VPQLVYSEACLRFARFLV 396 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc-CcchHHHHHHHHHHHHHH
Confidence 12334444444443322211 222244556667777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 570 MLG--------------------NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 570 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
... .-.++..++.+++.+.-. .-........+..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~--~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK--DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh--hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 777 677788888888876432 2223335678999999999999988888888887776
Q ss_pred HH
Q 004811 630 LE 631 (729)
Q Consensus 630 ~~ 631 (729)
+-
T Consensus 475 ~~ 476 (1185)
T PF08626_consen 475 LV 476 (1185)
T ss_pred hc
Confidence 53
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.68 E-value=7.9 Score=33.05 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004811 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358 (729)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 358 (729)
+.-..-..++++++........-.+....+.+|...+... .++..+|..+.... . ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~~---I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSKG---I---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHHT---T---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHcC---c---cHHHHHHHHHHHH
Confidence 4555666778887776543322222233344444444422 27888888765541 1 3467788999999
Q ss_pred HHHHhcCHHHHHHHHHHHH
Q 004811 359 AHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al 377 (729)
.+...|++.+|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.52 E-value=44 Score=34.93 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
......+.-.+..++|..|...+...... .++... ...+..+ |..+...-++.+|.++++..+.....+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 34556677778899999999999998875 222222 2334444 455567889999999999877642110
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
......+..+..+ -++...+...............+....-++.-|.--...|+|+.|+..+-+++++.-+.
T Consensus 203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 0001111111111 12222222222211110000011112222223333346899999999999999886653
No 388
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.48 E-value=75 Score=37.39 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=75.0
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004811 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (729)
...++.....|+.|+..|++...-.+ |... -.++.+.+|.+...+-.-..--..|.+|+..+..+.+ .+..+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 45667777889999999999876652 2221 2345777887776543322222566666666655533 24555
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
--|...|.+|...|+|++-+++|.-|++.++.....
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 567788889999999999999999999999877653
No 389
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=38 Score=33.84 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=68.7
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 004811 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (729)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (729)
+....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..........+.. ...++.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V-h~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV-HSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh-hhhHHH
Confidence 3445668999999999999887765 44456667778899999999999999999999888877776655433 334444
Q ss_pred HH-HHHHHcCCHHHHHHH
Q 004811 606 MG-LACVQRYSINEAVEL 622 (729)
Q Consensus 606 la-~~~~~~g~~~~A~~~ 622 (729)
++ ..|...|++..+...
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 54 445556776654433
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.79 E-value=49 Score=34.61 Aligned_cols=65 Identities=15% Similarity=-0.019 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
....+..++..++|..|...|...... ..+... .........|..++..-++.+|...++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566778899999999999998763 111111 12222334455567788899999999987765
No 391
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.45 E-value=2.3 Score=41.25 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..|.-....|+.++|..+|+.|+.+ .|.+++++..+|.+.....+.-+|- .+|-+|+.++|.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~AD-q~Y~~ALtisP~ 182 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEAD-QCYVKALTISPG 182 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhh-hhhheeeeeCCC
Confidence 3444456789999999999999988 5888889999999999999999999 999999999996
No 392
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.40 E-value=22 Score=38.10 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811 429 AEVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
.....++.+||.+-.. ...-..++.+|.+|+...+..++ .....-|..+|..|++.+++.+|+..+-++-...+.
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555432 23345678999999999998884 334566788999999999999999999999888766
Q ss_pred CC
Q 004811 507 PV 508 (729)
Q Consensus 507 ~~ 508 (729)
..
T Consensus 351 Yn 352 (618)
T PF05053_consen 351 YN 352 (618)
T ss_dssp SB
T ss_pred cc
Confidence 43
No 393
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=84.92 E-value=43 Score=33.21 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=28.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
.+..+..+-++....++++ ++.-+.+|..|+.- ..--..+|..++++|++...
T Consensus 195 WRERnp~~RI~~A~~ALeI---------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEI---------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHhcCcHHHHHHHHHHHhc---------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence 3344455555556666666 34445555555532 22334566677777666543
No 394
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.91 E-value=5.7 Score=41.70 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH---HHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004811 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA---IEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~~~~g~~~p~~~~~~~~La 691 (729)
....|+..|.+++.. .|+....+.+.|.++.+.+-...+ +.-...++.+ +|-...++++|+
T Consensus 389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la 452 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHH
Confidence 356677778887776 677777788888887776544443 3333444433 688888889999
Q ss_pred HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++..++++.+|+ .....+....|.
T Consensus 453 ~aL~el~r~~eal-~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 RALNELTRYLEAL-SCHWALQMSFPT 477 (758)
T ss_pred HHHHHHhhHHHhh-hhHHHHhhcCch
Confidence 9999999998888 877777777773
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=62 Score=34.94 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----------
Q 004811 407 DHEAALEHLVLASMTMIAN------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN----------- 469 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------- 469 (729)
.|++|...|.-+...+..+ ...|.....+..++.++..+|+.+-|....+++|=.+.....+.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 3556666666555443322 23577778889999999999999999999999987776655321
Q ss_pred --Ch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811 470 --HP---AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 470 --~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
++ ....+++..-..+.+.|-+.-|.++++-.+.+-.. . +|. .+.+.+-....+..+|.=-+.+++..-
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~----e-DPl--~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS----E-DPL--GILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc----C-Cch--hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12 22334444455667789999999999988887211 1 221 122222223334445544444444331
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 004811 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISKL 588 (729)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 588 (729)
.. ... ...+... .-..+|..|..... -..|...+.+|+...
T Consensus 406 ~~-n~l-~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 406 NM-NKL-SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hh-ccH-hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 11 111 1111111 11245566665554 567788888888764
No 396
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.79 E-value=7.1 Score=29.84 Aligned_cols=50 Identities=22% Similarity=0.065 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (729)
.+..+...|..+-..|+ |++|+.+|.+|+..+.......+++..-..+..
T Consensus 5 ~a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ 54 (77)
T cd02683 5 AAKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQ 54 (77)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 45567788888888887 999999999999999887666666555444443
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.66 E-value=2.5 Score=28.16 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 645 YSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.+.||.+|..+|+.+.|.+.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999985
No 398
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.29 E-value=23 Score=29.55 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYH---PD----TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+..+|...++.+++-.++-.|++|+.+.+++..... .+ ......+||..+..+|+.+-.+.|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 345788888999999999999999999888742211 11 12256799999999999999999999887655444
Q ss_pred c
Q 004811 676 L 676 (729)
Q Consensus 676 ~ 676 (729)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 399
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.24 E-value=23 Score=29.54 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
..+|...+..+++-.++-+|++|+.+.++....+. .-......+||..+..+|+.+-.++|++-|-+......
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi 84 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI 84 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence 45677777777888888888888877766631111 11234567899999999999999999988877655544
Q ss_pred C
Q 004811 509 P 509 (729)
Q Consensus 509 ~ 509 (729)
|
T Consensus 85 P 85 (140)
T PF10952_consen 85 P 85 (140)
T ss_pred c
Confidence 3
No 400
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.48 E-value=34 Score=30.89 Aligned_cols=193 Identities=13% Similarity=0.027 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH-----cCChHHHHHHHHHh
Q 004811 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS-----LGQYNEAIPVLEQS 291 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a 291 (729)
+...+.....++..+-...+ -|+.|.+++...-+.... +...+.+|..++. .++...|++.|..+
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~k-------nF~~A~kv~K~nCden~y---~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~a 99 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQK-------NFQAAVKVFKKNCDENSY---PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIA 99 (248)
T ss_pred ccCCchHHHHHHHHHHHHHH-------HHHHHHHHHHhcccccCC---cHHHHHhhhhhhcccCCCccCHHHHHHHHHHH
Confidence 33344455555544333323 367777777665544443 4446666665543 45788999999998
Q ss_pred cccchhhccccchHHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004811 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAML-----G--QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (729)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (729)
-... ...+...+|.+++.- + +..+|+.++.++-.+ ....+.+.|...|..-
T Consensus 100 C~~n-----------~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g- 157 (248)
T KOG4014|consen 100 CDAN-----------IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGG- 157 (248)
T ss_pred hccC-----------CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhcc-
Confidence 8753 223466677776542 2 367888888887766 4556777777666432
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
.+++ ....|....+ + ..+..+....+.+.|.++-.+|..+ ....+..++.++|..
T Consensus 158 -~~k~-------~t~ap~~g~p--~-------~~~~~~~~~kDMdka~qfa~kACel--------~~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 158 -KEKF-------KTNAPGEGKP--L-------DRAELGSLSKDMDKALQFAIKACEL--------DIPQACANVSRMYKL 212 (248)
T ss_pred -chhh-------cccCCCCCCC--c-------chhhhhhhhHhHHHHHHHHHHHHhc--------CChHHHhhHHHHHHc
Confidence 2221 1112222221 1 1233445567888888888777542 233555666666643
Q ss_pred ----cCCHHHHHHHHHHHHHHHHHhc
Q 004811 445 ----LSRYDEAGFAYQKALTAFKTNK 466 (729)
Q Consensus 445 ----~g~~~~A~~~~~~al~~~~~~~ 466 (729)
-.+-++|..+-.+|.++.+...
T Consensus 213 GDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 213 GDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 2367889999999998876654
No 401
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.65 E-value=1.9 Score=40.05 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=50.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.....++.+.|.++|.+++.+ -|+....|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345678999999999999999 8999999999999999999999999999999986
No 402
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.48 E-value=8.4 Score=28.69 Aligned_cols=48 Identities=25% Similarity=0.202 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
+..+...|..+-..|+ +++|+.+|.+|+..+-......+++..-..+.
T Consensus 5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~ 52 (69)
T PF04212_consen 5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQALR 52 (69)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4567788888888997 99999999999999877655444444444433
No 403
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.30 E-value=20 Score=36.97 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhC
Q 004811 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--VPPEEIASGLTDVSSIYESMNE---LEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 550 (729)
.++..|........|++|+.++-.|-+.+....+. ..-..++..-..+.++|+.+.+ ..+|..-+..+-+-+...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 44455666666677777777766665554332000 0011123334445667776654 334554444444444333
Q ss_pred CCCC------------C---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH------H-
Q 004811 551 PGQQ------------S---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG------L- 608 (729)
Q Consensus 551 ~~~~------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la------~- 608 (729)
+|.. + .+...+..-|.+.+.+|+-++|.++++.+...+....-.+... ..+..+| .
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~l--sllv~mGfeesdaRl 322 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETL--SLLVGMGFEESDARL 322 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHH--HHHHHcCCCchHHHH
Confidence 3322 1 2334556679999999999999999999998877664443221 2222222 1
Q ss_pred -HHHHcCCHHHHHHHHHH
Q 004811 609 -ACVQRYSINEAVELFEE 625 (729)
Q Consensus 609 -~~~~~g~~~~A~~~~~~ 625 (729)
+-.-.|+.+.|..+..+
T Consensus 323 aLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 323 ALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHhccccHHHHHHHHHH
Confidence 11224677777776643
No 404
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.70 E-value=11 Score=28.68 Aligned_cols=50 Identities=20% Similarity=0.111 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (729)
.+..+...|...-..|+ |++|+.+|.+|+..+-......+++.....+..
T Consensus 5 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~ 54 (75)
T cd02678 5 KAIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESIRA 54 (75)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34567788888888886 999999999999999887655555554444433
No 405
>PRK09169 hypothetical protein; Validated
Probab=80.76 E-value=1.8e+02 Score=37.41 Aligned_cols=472 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC
Q 004811 243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG 322 (729)
Q Consensus 243 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 322 (729)
..+.+|...+-......+......--..++.++..+++|.+...+-.-+..+......... .....--..+++++..+.
T Consensus 263 ~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALS 341 (2316)
T PRK09169 263 EACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG-LLQAMNAQAVANALNALS 341 (2316)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHh
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004811 323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402 (729)
Q Consensus 323 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~ 402 (729)
++.+...+-.-+..+...+..........--..++.++.-..+|.+...+-.-+..+..............--..++++.
T Consensus 342 KWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaL 421 (2316)
T PRK09169 342 KWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANAL 421 (2316)
T ss_pred cCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHH
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDC--SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (729)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (729)
....++..+..+-.-+..+.......+.....+. .++.++..++++.+...+-..+..++..+...-.......-..+
T Consensus 422 nALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~l 501 (2316)
T PRK09169 422 NALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGL 501 (2316)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004811 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (729)
++++....++.+...+-.-+..+..... ..........-..+++++....++.+--.+-..+..+..............
T Consensus 502 AN~LnALsKwp~~~~c~~aA~aLA~rla-~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~ 580 (2316)
T PRK09169 502 ANALNALSKWPDSDACRAAAEALADRLA-QDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSAL 580 (2316)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHh-cChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhcc
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 561 -EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 561 -~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
-..+++++....++...-.+.+-+..+...+...........-..++.++....++.+...+-..+..+...+......
T Consensus 581 naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l 660 (2316)
T PRK09169 581 NAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGL 660 (2316)
T ss_pred CHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchh
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHh
Q 004811 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS------RKAQSLETLLD 713 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~------A~~~~l~~al~ 713 (729)
-..-.-..+++++..+.++.+.-.+-..+..+...+....++.....-..++.++....++.+ |. ..+-..|.
T Consensus 661 ~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~-~~LA~rL~ 739 (2316)
T PRK09169 661 PRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAA-EALAGRLA 739 (2316)
T ss_pred HHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHH-HHHHHHHh
Q ss_pred hccc
Q 004811 714 ANSR 717 (729)
Q Consensus 714 ~~p~ 717 (729)
.+++
T Consensus 740 ~~~~ 743 (2316)
T PRK09169 740 ADAD 743 (2316)
T ss_pred cChH
No 406
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.19 E-value=29 Score=37.43 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
.+..+.|+++.|..+..++-... -|..||.+....|++..|.++|.++..+
T Consensus 645 elal~lgrl~iA~~la~e~~s~~--------------Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEANSEV--------------KWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhcchH--------------HHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34567788898888777654331 2889999999999999999999988665
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.05 E-value=7.8 Score=40.28 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
++..|.+++.-+|+|..|++.++-.---.+.++..-.+-...+++.+|-+|..+++|.+|++.|...+-...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999988765321111222222345666889999999999999999999988876543
No 408
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=80.00 E-value=16 Score=27.85 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 268 (729)
.+..+...|...-..|+ +++|+.+|.+|++.+.......+++.....+
T Consensus 7 ~A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~ 54 (77)
T smart00745 7 KAKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRREAV 54 (77)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34556778887888886 9999999999999998876655555444333
No 409
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.99 E-value=6.5 Score=39.34 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004811 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (729)
.+.-+...|+-.+.+++++.|...|..|..+...++|..+.....+++..|..++..+++...+-.+
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455788999999999999999999999999999999999999999999999999988877665443
No 410
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.96 E-value=1.1e+02 Score=34.46 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 004811 272 AAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~ 290 (729)
-.+++-.|+|+.|+.++-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 4556778999999999887
No 411
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.71 E-value=1.4e+02 Score=35.38 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH------hcch----HHHHHHHHHH
Q 004811 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------SMNE----LEQAIKLLQK 542 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~ 542 (729)
.....+.+|.+|...|+..+|+.+|.+|..-..+ ..++..+..-.. ..|+ -..|..||.+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge----------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlk 988 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE----------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLK 988 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhcccc----------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHH
Confidence 3456677899999999999999999999876422 112222211100 2232 2236677777
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622 (729)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 622 (729)
+++++... +..+.+......|++. .++.. +..+.....+=.-...+|.+-+|...
T Consensus 989 v~rlle~h---------------------n~~E~vcQlA~~AIe~---l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 989 VVRLLEEH---------------------NHAEEVCQLAVKAIEN---LPDDN-PSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHh---------------------ccHHHHHHHHHHHHHh---CCCcc-hhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 77776654 3334444444444443 33333 33555666666666777777777654
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH-----HHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE-----ILEFVVG-IREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~-~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (729)
+-+- ++......++..|..++++.|.++.=.+ +-++... +.+.......-.....|..|=..+..
T Consensus 1044 i~~n---------pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~ 1114 (1480)
T KOG4521|consen 1044 ILRN---------PDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVA 1114 (1480)
T ss_pred HHcC---------CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Confidence 4331 1122333467777778888877643222 1112222 11111111111222234444456778
Q ss_pred hCCHhHHHHHHHHHHHhhccc
Q 004811 697 AGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 697 ~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+++.+|..-.|+.+..+..+
T Consensus 1115 RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1115 RHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred hcchhHHHHHHHHHHHHhccc
Confidence 899999986788888877665
No 412
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.70 E-value=2.4e+02 Score=38.09 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhCC
Q 004811 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-ELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 551 (729)
.+++....|.+....|-++.++..+.+...+- ...-.+...-+..-+.+|.... ....+++..+..--.+
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp-----~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~y---- 2805 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLP-----NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMY---- 2805 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHH----
Confidence 34555566666667777777766666655541 1111111112222233333332 3333333322111000
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 004811 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----YS----INEAVELF 623 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~----~~~A~~~~ 623 (729)
-.....+..+...|..+.+.|+.++|-..|..|+++... ...+|...|.....+ +. -..|+.+|
T Consensus 2806 F~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~--------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCy 2877 (3550)
T KOG0889|consen 2806 FSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG--------LGKAWAEWGKYLDNRFNKEPVNISFACNAVSCY 2877 (3550)
T ss_pred HhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 011234567778899999999999999999999998554 355666666554432 11 23455555
Q ss_pred HHHHHH
Q 004811 624 EEARSI 629 (729)
Q Consensus 624 ~~al~~ 629 (729)
-+|...
T Consensus 2878 LqA~~~ 2883 (3550)
T KOG0889|consen 2878 LQAARL 2883 (3550)
T ss_pred HHHhcc
Confidence 555544
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.93 E-value=16 Score=39.29 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=37.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
..+.|+++.|.....++ +...-|..||.+....+++..|.++|.++.+..
T Consensus 647 al~lgrl~iA~~la~e~-------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-------------NSEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hhhcCcHHHHHHHHHhh-------------cchHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 35667777776654443 233457889999999999999999999886543
No 414
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.85 E-value=5.4 Score=39.86 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.-+...|+-...++++++|...|..|..+..+++|..|.++..+++..|..++..++.+.++
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999999999999999999999999999999999999888776
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.82 E-value=28 Score=29.74 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 393 ADRRLMGLICETKGD---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
...++++.++....+ ..+.+..++..+. ...+...-...+.|+..+++.++|+.++.+.+..++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456777777766554 4455666655443 2334445567788999999999999999999999887
No 416
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.78 E-value=75 Score=31.84 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
..|+++.+..++ .......-..-|.+++..++|.+....+..+-....
T Consensus 42 ~~y~Q~~q~~kk-----~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 42 KAYEQSKQFTKK-----KKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hHHHHHHHhhhh-----hhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 455666665433 112222223457788888888888777766655443
No 417
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=78.33 E-value=18 Score=27.43 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
+..+...|...-..|+ +++|+.+|..|+..+.......+++..-..+......|
T Consensus 6 a~~l~~~Av~~D~~g~-~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~y 59 (75)
T cd02656 6 AKELIKQAVKEDEDGN-YEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEY 59 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 4456677777778886 99999999999999988766555555444444333333
No 418
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=78.29 E-value=19 Score=27.43 Aligned_cols=51 Identities=22% Similarity=0.084 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
.+..++..|...-..|+ |++|+.+|.+|++.|-......+++..-..+...
T Consensus 5 ~Ai~lv~~Av~~D~~g~-y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k 55 (75)
T cd02684 5 KAIALVVQAVKKDQRGD-AAAALSLYCSALQYFVPALHYETDAQRKEALRQK 55 (75)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34567788888888886 9999999999999998876666666654444433
No 419
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=78.13 E-value=15 Score=35.66 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (729)
......++=..+...++++.|..+.++.+.+ +|....-+...|.+|.++|.+.-|++.++..++.+ |
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~-----P 246 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC-----C
Confidence 4556667777888899999999999999998 78877778889999999999999999999988775 5
Q ss_pred CChhHHHHHHHHHHH
Q 004811 679 ANPDVDDEKRRLAEL 693 (729)
Q Consensus 679 ~~p~~~~~~~~La~~ 693 (729)
+.|....+...+..+
T Consensus 247 ~~~~a~~ir~~l~~l 261 (269)
T COG2912 247 DDPIAEMIRAQLLEL 261 (269)
T ss_pred CchHHHHHHHHHHHH
Confidence 566655555554443
No 420
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.72 E-value=39 Score=36.50 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=74.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHHHcCCCChhHH
Q 004811 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF-VVGIREEKLGTANPDVD 684 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~g~~~p~~~ 684 (729)
+...+...+....+.-.+..++.. +|....++.+|+......|....+...+.. +... .|.+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 667777788888888888888888 888899999999999888887777766665 4333 35555
Q ss_pred HHHHH------HHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 685 DEKRR------LAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~------La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..... ++..+...|+..++. ..++++.++.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~d~~p~ 174 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAE-LALERAVDLLPK 174 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhhhh
Confidence 44444 488899999999999 999999998886
No 421
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.61 E-value=1.5 Score=44.93 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (729)
-+++-+.+++.++.||+........|-+|..+|+++.-++++.-|+.+.++.+.|-.|.+...+...++++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356667788889999998766667888999999999999999999999999999999999988888887764
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.42 E-value=80 Score=31.42 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=61.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
...+..+..+-++....++++ ++..+.+|..|+.--. --..+|..+++++++..+. .
T Consensus 193 ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~-------------~ 249 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET-------------I 249 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH-------------H
Confidence 334445556666777778887 7888888877775332 3466788888888877322 1
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
++........|...+|.. . .+...+..+-..++.+..++|+..+|++.++...+
T Consensus 250 yr~sqq~qh~~~~~da~~---------r---RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 250 YRQSQQCQHQSPQHEAQL---------R---RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhHHHHhhhccchhhhh---------h---cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 111121222222111110 0 11122234445677777777777777777765543
No 423
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.88 E-value=11 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 478 VRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
+.||..|..+|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 424
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.61 E-value=29 Score=33.93 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
.+...+..|...|.+.+|+.+.++++.+ ++.....+..+-.++..+|+--.|...|++.-+.++...|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 3455678899999999999999999986 33455677788889999999999999999999888887776444
Q ss_pred hHH
Q 004811 640 DTL 642 (729)
Q Consensus 640 ~~~ 642 (729)
+..
T Consensus 353 dsi 355 (361)
T COG3947 353 DSI 355 (361)
T ss_pred hhH
Confidence 433
No 425
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.15 E-value=1.5e+02 Score=33.82 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004811 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 245 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
|.-|+.+.+... .+......++...|..++..|++++|...|-+.+...
T Consensus 350 y~~Ai~LAk~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 455555555442 2334567778888999999999999999999998764
No 426
>PF12854 PPR_1: PPR repeat
Probab=75.38 E-value=6 Score=24.54 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811 642 LGVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
..+|..|...|.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34889999999999999999999875
No 427
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.21 E-value=1.9e+02 Score=34.52 Aligned_cols=130 Identities=21% Similarity=0.123 Sum_probs=59.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHH
Q 004811 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG--ENHPAVASVFV 478 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~ 478 (729)
+-..+++|+.|+.++..+- +.. +-..-..-.+.|-|.+|+.+|.--.+..+.+.. .++-..-.-+.
T Consensus 889 ID~~L~ry~~AL~hLs~~~------~~~------~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~ 956 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECG------ETY------FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSD 956 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcC------ccc------cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhcccc
Confidence 3445677777777765441 000 011112234456666666665433332221110 00001111122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811 479 RLADMYNRTGKLRESKSYCENA------LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
.-|.+|...|+.++|+..|+.+ +.+..+.. .........-..|+.-+..++++-+|-+.....+
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~--~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLS--EGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3456677777777777776543 33433321 1122223233455666666677666665555444
No 428
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=75.05 E-value=84 Score=33.94 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
-..++.+|.+|+...+.....++. .-|..+|-.|++.+++.+|+..+-+|-.....
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999888776543 45777899999999999999999999877554
No 429
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.76 E-value=13 Score=38.65 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=79.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
..|+...|-.....++...+. .+......+.+...+|+|+.|...+..+-.+. + ....+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~--------~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~----s~~~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ--------DPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----G----TTDSTLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC--------CchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----c----CCchHHHHHH
Confidence 457776666655555543211 12233445788889999999998877665552 1 1122445556
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.....+|++++|....+-.+. +.-+..++..--|..-..+|-++++. .++++++.++|.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~--------~eie~~ei~~iaa~sa~~l~~~d~~~-~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLS--------NEIEDEEVLTVAAGSADALQLFDKSY-HYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhc--------cccCChhheeeecccHHHHhHHHHHH-HHHHHHhccCCh
Confidence 667788999999887665552 12233344444455566788899999 999999999987
No 430
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=73.94 E-value=37 Score=25.82 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
.+..++..|...-..|+ |++|..+|..+++.+.......+++..-..+.
T Consensus 5 ~A~~l~~~Ave~d~~~~-y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir 53 (75)
T cd02677 5 QAAELIRLALEKEEEGD-YEAAFEFYRAGVDLLLKGVQGDSSPERREAVK 53 (75)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 45567788888888886 99999999999999988766566655544443
No 431
>PF12854 PPR_1: PPR repeat
Probab=73.69 E-value=7.2 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004811 265 VMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (729)
...|..+-..|++.|+.++|+++|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 556888999999999999999999864
No 432
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.88 E-value=39 Score=25.73 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
.+...|.-+...|++++|+.+|..+++.+...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34455666778899999999999999998773
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.81 E-value=31 Score=25.57 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHH
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEK 687 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~ 687 (729)
...|.-+...|++++|+.+|.++++.+...+. ..+|.....+
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l 51 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQAL 51 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 44555667789999999999999998776654 2234444443
No 434
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.54 E-value=1.1e+02 Score=30.73 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811 520 LTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
-.+-|.++...++|.+....+..+-..+.
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 34567788888888887777766555444
No 435
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.30 E-value=1.4e+02 Score=32.60 Aligned_cols=129 Identities=12% Similarity=-0.019 Sum_probs=73.5
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHH
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AISKL 588 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~ 588 (729)
++.++....... +...+...+....+...+..++...+.. +.+..+|+......|....+...+.. +....
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-------CPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 334555544444 6666777777777776666666654433 35566777776666666555544443 33321
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
...... -..... ++.++.....+|+..++....+++..+ .|....+...+.....++-
T Consensus 133 ~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~d~--------~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 133 PDNAEF-LGHLIR-FYQLGRYLKLLGRTAEAELALERAVDL--------LPKYPRVLGALMTARQEQC 190 (620)
T ss_pred cchHHH-HhhHHH-HHHHHHHHHHhccHHHHHHHHHHHHHh--------hhhhhhhHhHHHHHHHHhc
Confidence 110000 001112 333788888889999999999998888 5555555555554444433
No 436
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.72 E-value=22 Score=26.99 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+..+...|.-+-..|++.+|+.+|+++++.+.+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44556667777889999999999999999876543
No 437
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.01 E-value=33 Score=32.67 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=65.3
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004811 526 IYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (729)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (729)
-.+..|+++.|+++..-|++.....|+... .++.-....+......|+.-+. +|...+.......+.+....+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~--~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP--YFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhcCCCChHHHH
Confidence 346789999999999999998666554322 2333344445555666653221 222223322233344455567
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHH
Q 004811 601 VALNQMGLACV---------QRYSINEAVELFEEARSI 629 (729)
Q Consensus 601 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~ 629 (729)
..+-.+|..++ ..++...|+.++++|+.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 77888888774 456788999999999998
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.55 E-value=70 Score=37.04 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhCCCC
Q 004811 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~ 553 (729)
-+..|+.+|...|++++|++.+.+...-... ........+-.+-..+...+.. +-..++-.-.++..+.. +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~-----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi 579 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD-----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GI 579 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc-----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-he
Confidence 4667899999999999999999988774310 1112222333333333344433 44444444444333322 11
Q ss_pred C------CcHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--------cCCHHH
Q 004811 554 Q------STVAG-IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINE 618 (729)
Q Consensus 554 ~------~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~ 618 (729)
. ...+. +-.....-|......+-++.|++.++...+.... ..+..++..|.. .++-++
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-------~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-------LLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-------HHHHHHHHHHHHHHhhccCchhcccc
Confidence 0 00001 1112223355677788889999988876443222 122222222221 223345
Q ss_pred HHHH-HHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 619 AVEL-FEEARSILEQECGPYHPDT-------LGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 619 A~~~-~~~al~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+.+. +++-+..+.......+|.. ...|...+.++.++|+.++|+..|-..+.
T Consensus 653 ~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 653 APETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred chhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 5555 2333333332222222221 34677888889999999999999887665
No 439
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.11 E-value=49 Score=25.23 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 601 VALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
..+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34445566667789999999999999999766
No 440
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.60 E-value=4.3e+02 Score=35.93 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM---GLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.+.+.+..|.+..+.|-++-++..+.+...+ .......+...+ +.+|.... ..+..+++.....
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytl-------p~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sT 2801 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTL-------PNVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIEST 2801 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-------CcchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcc
Confidence 4455555666666666666666555554433 111122222222 23333322 2233333333222
Q ss_pred cCC--CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811 634 CGP--YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 634 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
.-. .+...+..+..-|....+.|+.++|-..|..|+++..
T Consensus 2802 Nl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~ 2843 (3550)
T KOG0889|consen 2802 NLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD 2843 (3550)
T ss_pred cHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh
Confidence 110 1334556777889999999999999999999999854
No 441
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.40 E-value=2.2e+02 Score=32.52 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=39.3
Q ss_pred ccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 004811 197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF 252 (729)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~ 252 (729)
+.++..|.-|+........+....+..+...|..++..|+ +++|...|-+++...
T Consensus 344 L~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGFL 398 (933)
T ss_pred HHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHcccC
Confidence 3444445556644444444445567788999999999997 999999999988653
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.93 E-value=18 Score=22.84 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHH--HHHHHhhcc
Q 004811 685 DEKRRLAELLKEAGRVRSRKAQS--LETLLDANS 716 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~--l~~al~~~p 716 (729)
+.++.+|-.+...|++++|+ +. |+-+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~-~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAI-HFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhcc
Confidence 35678899999999999999 99 447766665
No 443
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.79 E-value=16 Score=23.14 Aligned_cols=29 Identities=28% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH--HHHHH
Q 004811 351 ETCRYLAEAHVQALQFSEAQKFCQ--MALDI 379 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~ 379 (729)
+.++.+|..+...|++++|+..|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 457788999999999999999954 54443
No 444
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=67.15 E-value=12 Score=37.26 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (729)
|..+|.+|+.+ .|.....+..||.++...|+.-.|+-+|-+++-. ..|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 68899999999 8999999999999999999999999999999853 2454 6678888888777
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=66.42 E-value=36 Score=32.41 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred HHHcCChHHHHHHHHHhcccchhhccc---cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004811 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQ---EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (729)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (729)
.+..|+|+.|+.+..-|++.....+.. +.+...+.-....+......|+.-+. .++.....+. ....-.+.-.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHHH
Confidence 467899999999999999876433321 22222333344455555666653221 1222222222 111111233455
Q ss_pred HHHHHHHHHH---------HhcCHHHHHHHHHHHHHHHHhcCC
Q 004811 352 TCRYLAEAHV---------QALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 352 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.+..+|..+. ..++...|+.++++|+.+.++.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 5666677663 456788999999999999987764
No 446
>PF13041 PPR_2: PPR repeat family
Probab=65.84 E-value=23 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.+|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 47888999999999999999999988754
No 447
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=65.21 E-value=69 Score=28.48 Aligned_cols=113 Identities=13% Similarity=0.002 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC----CC--------------------------CCHhHHHHHHHHH
Q 004811 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGAN----GK--------------------------PSLELVMCLHVIA 272 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~----~~--------------------------~~~~~~~~~~~la 272 (729)
.....|+..+..|+ .++|+....+|...+..... .. ............+
T Consensus 4 ~~i~~Ar~aL~~g~-~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 4 RDIQKARLALFQGD-TDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHH
Confidence 34577888899997 99999999999887753210 00 0122345566778
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
.-.+..|+...|.+.+..+-.-. ......-|..........+..+...|++.+|...+..++.-
T Consensus 83 ~~~l~~g~~~~A~~~L~~~~~ei-~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 83 NELLKKGDKQAAREILKLAGSEI-DITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-EE-EEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHhcccc-eeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 88999999999999998764321 11112233445556778899999999999999999888753
No 448
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=64.98 E-value=43 Score=28.48 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 004811 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (729)
=..++++++..+.....-.+++....+|...+... ++ +.+.|.-.... +.-...+..|...|..+...|
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g 113 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAG 113 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcC
Confidence 34556666665544322345667777777777653 33 44444433321 334455777888999999999
Q ss_pred CHHHHHHHHHH
Q 004811 573 NYSDSYDSFKN 583 (729)
Q Consensus 573 ~~~~A~~~~~~ 583 (729)
++.+|.++|+.
T Consensus 114 ~~~~A~~iy~~ 124 (125)
T smart00777 114 RYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHc
Confidence 99999998864
No 449
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.58 E-value=65 Score=24.64 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHH
Q 004811 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEK 687 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~ 687 (729)
+...|.-+...|++++|+.+|.++++.+...+. ..++.....+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~ 52 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNL 52 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 344555667889999999999999999877653 3334443333
No 450
>PF13041 PPR_2: PPR repeat family
Probab=63.48 E-value=27 Score=23.69 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
..|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 46677888899999999999999988764
No 451
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=63.37 E-value=1e+02 Score=30.48 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 004811 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (729)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 612 (729)
|+.+|.+|..+.|.. ...|+.+|.++...|+.-.|+-+|-+++-. . .+ ...+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~-------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~-~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------GNPYNQLAVLASYQGDDLDAVYYYIRSLAV------R-IP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------S-B---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCcccchhhhhccccchHHHHHHHHHHHhc------C-CC-cHHHHHHHHHHHHH
Confidence 688999999999988 478899999999999999999999888753 1 22 25566777766665
No 452
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.02 E-value=43 Score=25.71 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
..|..+-..|+.++|+.+|++++..+.+......+ .....-.++.|..+-++..
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMK 66 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHH
Confidence 33444555689999999999999998776553332 1222234566666555544
No 453
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.69 E-value=2.2e+02 Score=30.51 Aligned_cols=167 Identities=11% Similarity=-0.036 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
+..+-.++.....+.-....+.+++.. ...-.+++.++.+|... ..++-..++++.++.+-+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD------- 131 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND------- 131 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-------
Confidence 344445555555566666777888777 34557888999999887 5566667777777665332
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
+..-..|+..|.. ++...+..+|.+++..+.........-.+|..+-.. --.+.+.-+.... ++-... | .
T Consensus 132 -vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~---kiqt~l-g--~ 201 (711)
T COG1747 132 -VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQK---KIQTKL-G--E 201 (711)
T ss_pred -HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHH---HHHHhh-c--c
Confidence 2345567777666 899999999999986544333333333344333211 1223333222222 221111 1 1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.....++..+-.-|....++.+|++.+...++.-
T Consensus 202 ~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 202 GRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred chHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 1222333344455667788999999988777763
No 454
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.55 E-value=12 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788999999999999999998754
No 455
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=62.38 E-value=13 Score=37.15 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-----------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
..+...++.++++.|..-|.+++.......... ...-.....+++.+-+..+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 346667888899999888888887654211110 0111234556777777788888887776666663
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
++....+++..+..+....++++|++.++.+... .|........+..+-....++.
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHHHH
Confidence 6777778999999999999999999999988765 4665555555555444443333
No 456
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.60 E-value=14 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+|+.+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998764
No 457
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.38 E-value=1e+02 Score=32.40 Aligned_cols=120 Identities=11% Similarity=-0.021 Sum_probs=66.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004811 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (729)
Q Consensus 320 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg 399 (729)
..|+...|-.-...++... |..+......+.++..+|+|+.+...+..+-.+..... .+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--------~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--------STLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--------hHHHHHH
Confidence 3455555555555555442 33334445567778888888888887766554443221 2345555
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
.....+|++++|.....-.+ ++..+...+...-+.....+|-++++..+.++.+.+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l------~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 365 RSLHGLARWREALSTAEMML------SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HhhhchhhHHHHHHHHHHHh------ccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 66677788888877654433 111111222222333344556677777777776665
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.29 E-value=3.5e+02 Score=32.33 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----------HHh-------c-CCCCCHhH--HHHHHHHHHHHHHcCChH
Q 004811 223 LLLKQARELISSGDNPQKALELALRAAKSF----------EIG-------A-NGKPSLEL--VMCLHVIAAIYCSLGQYN 282 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~----------~~~-------~-~~~~~~~~--~~~~~~la~~~~~~g~~~ 282 (729)
.-+.+|.++...|+ ..+|+.+|.+|..-+ ... . ...+.+.. ...|...-.++...+-.+
T Consensus 922 ~rfmlg~~yl~tge-~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGE-PVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHhhheeeecCCc-hHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 34667778888887 999999999987532 110 0 11222222 333444455556667777
Q ss_pred HHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004811 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (729)
Q Consensus 283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (729)
.++++..+|++.. +++.+ .....+..+=.-+..+|.+-+|...+-+- ++......++..+-.+++.
T Consensus 1001 ~vcQlA~~AIe~l----~dd~p-s~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENL----PDDNP-SVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHHhC----CCcch-hHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHh
Confidence 8888888887764 22222 22333445555566677777765543321 1123345677778888888
Q ss_pred hcCHHHHHHH-----HHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHH
Q 004811 363 ALQFSEAQKF-----CQMALD-IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH-LVLASMT 421 (729)
Q Consensus 363 ~g~~~~A~~~-----~~~al~-~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~-~~~al~~ 421 (729)
.|+++.-.++ -++... +............-..|..|-..+...+++.+|-.+ |+.+..+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 8876532211 011111 111100011111223366666677788888887654 5555443
No 459
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.71 E-value=1.7e+02 Score=28.47 Aligned_cols=175 Identities=11% Similarity=0.078 Sum_probs=109.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
+.....-..|+.....++.+ +|..-.+|...-.++..++ +..+-++++.+.++- .+....+|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~l--------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~---------npKNYQvW 115 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRL--------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED---------NPKNYQVW 115 (318)
T ss_pred HhccccCHHHHHHHHHHHHh--------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---------CccchhHH
Confidence 34455667788888888887 6777777777766666544 456666777776665 33345677
Q ss_pred HHHHHHHHhcchHH-HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004811 521 TDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 521 ~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
...-.+....|++. .-+++...++....+. ..+|...-.+...-+.|+.-+.+..+.++.-.. .
T Consensus 116 HHRr~ive~l~d~s~rELef~~~~l~~DaKN-------YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~--------N 180 (318)
T KOG0530|consen 116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKN-------YHAWSHRQWVLRFFKDYEDELAYADELLEEDIR--------N 180 (318)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHhccccc-------hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--------c
Confidence 77777777778776 6677777777754443 245666667777777888888888777764211 1
Q ss_pred HHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cC
Q 004811 600 GVALNQMGLACVQ-RY-----SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IG 656 (729)
Q Consensus 600 ~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g 656 (729)
-.+|+..--+... .| ..+.-+.+..+.+.+ .|....+|..|..++.. .|
T Consensus 181 NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~--------vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 181 NSAWNQRYFVITNTKGVISKAELERELNYTKDKILL--------VPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhccC
Confidence 1222211111111 11 133445555666666 68888889999888886 44
No 460
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.61 E-value=3.6e+02 Score=32.30 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 604 NQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
..|+.-+..++++-+|.+...+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4556666677777777777666654
No 461
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=59.40 E-value=1.3e+02 Score=26.74 Aligned_cols=131 Identities=12% Similarity=0.037 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
++-+-|...++..+.... ......+...+-..-...|.|.+|..++.+.++.- +..+...+|..++.|
T Consensus 71 ~N~eLa~~tLEnLvt~sn------TKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNSN------TKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHH
Confidence 555666666666444311 11122334444445566789999999999998862 245667788888888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
.....+-.--+.--++..+...-...+.-|..+.+-...|..-.+.|...+|. +.++.++..+
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~ae-knL~~l~~Sn 201 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAE-KNLKNLLASN 201 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhc
Confidence 87766544334444444444444456777888877777788888999999999 9999888754
No 462
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.28 E-value=71 Score=27.16 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHH
Q 004811 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA 319 (729)
Q Consensus 240 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 319 (729)
.=..+++++++.+.....=..++.....+...+... .++..+|..+.... .|... +..|...|..+.
T Consensus 44 ~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~---IG~~~----AlfYe~~A~~lE 110 (125)
T smart00777 44 GLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKG---IGTKL----ALFYEEWAQLLE 110 (125)
T ss_pred hHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCC---cchhh----HHHHHHHHHHHH
Confidence 346677888888766544455677766666666542 44566666655432 22222 234778899999
Q ss_pred HcCCHHHHHHHHHH
Q 004811 320 MLGQLENSLMCYTT 333 (729)
Q Consensus 320 ~~g~~~~A~~~~~~ 333 (729)
..|++.+|..+|+.
T Consensus 111 ~~g~~~~A~~iy~~ 124 (125)
T smart00777 111 AAGRYKKADEVYQL 124 (125)
T ss_pred HcCCHHHHHHHHHc
Confidence 99999999999874
No 463
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=56.86 E-value=23 Score=21.27 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+|+.+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466777889999999999999998764
No 464
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=56.81 E-value=22 Score=21.35 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+|..+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466778889999999999999998754
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.44 E-value=2.5e+02 Score=29.18 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 004811 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA--CVQRYSINEAVELFE 624 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~ 624 (729)
..+..++..++|..|...|.+++... .... .......+..+..+ ++..-++++|.++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~-~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL--LSAV-NHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--cChh-hhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 45667788999999999999888652 1111 11123344445444 456678999999998
No 466
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.27 E-value=72 Score=24.25 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEI 254 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~ 254 (729)
.+..+...|...-..|+ |++|+.+|.+|++.|-.
T Consensus 5 kai~Lv~~A~~eD~~gn-y~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGN-AEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhh-HHHHHHHHHHHHHHHHH
Confidence 35567777777777885 99999999999999876
No 467
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=55.84 E-value=19 Score=36.10 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=73.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCC-------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811 397 LMGLICETKGDHEAALEHLVLASMTMIAND-------------QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
..+.-.+..+++..|..-|.+++....... ........+.+++.+-...+.+..|+.....++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 345556777888888888877765544110 11122345566778888888888888877766663
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+....+++..+..+....++++|++.++.+...
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 6777889999999999999999999999998877
No 468
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=55.79 E-value=29 Score=36.17 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004811 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (729)
Q Consensus 332 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~ 403 (729)
-+++-+.++++|+.+|+........|-+|...|+++..++++.-|+.+..++..+-.+..+..+...+.++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356667788899999998877788899999999999999999999999999998888877777777776654
No 469
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=55.15 E-value=2.3e+02 Score=28.34 Aligned_cols=186 Identities=12% Similarity=-0.063 Sum_probs=97.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
.-.-.|+....++..|...+.-|. |..|-.++-.-..+. ..++++...++...-..-.-..+|+.|++-+.+.-
T Consensus 121 ~ynf~~e~i~~lykyakfqyeCGN-Y~gAs~yLY~~r~l~-----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 121 HYNFTPERIETLYKYAKFQYECGN-YSGASDYLYFYRALV-----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccC-cccHHHHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334568889999999999999995 999988755444432 33444344444333333455678999999888876
Q ss_pred ccchhhcccc-chHHHHHHHHHHH--HHHHH-cCCHHHHHHHH------HHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004811 293 EIPVIEEGQE-HALAKFAGHMQLG--DTYAM-LGQLENSLMCY------TTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (729)
Q Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~la--~~~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (729)
+.-....-.. -....-.+|..-- .+++. -+--+.-++.| -.|++. ..+..+..|+.+...
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvt 264 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVT 264 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhc
Confidence 6531111000 0000111111100 11111 11122222221 122222 234556666666554
Q ss_pred h-cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004811 363 A-LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 363 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
. .....+++-+-++++...-.... + ....-.+.+-.-+++.|...++++...
T Consensus 265 nk~~rr~~lkdlvkVIqqE~ysYkD--P-----iteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 265 NKRRRRNRLKDLVKVIQQESYSYKD--P-----ITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred chHhhHHHHHHHHHHHHHhccccCC--c-----HHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4 56667777777777654333221 1 223334555566888888888776543
No 470
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.46 E-value=93 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (729)
..|.-+...|++++|+.+|.++++.+.....
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3445556689999999999999999877654
No 471
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=2.3e+02 Score=27.91 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
...|++=+|...|...+...-... ...........-+.+.++.++..-|..+.-..++..+. ....+...-.-++
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~K--~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek---a~~ad~~~~~anl 91 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQK--AHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK---AEVADSLLKVANL 91 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH---HHhhHhHHHHHHH
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
+.+....+.-+..+..+-+..--+...+|...-..+..+..||..+...+++.+|. .+|
T Consensus 92 ~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~-~HF 150 (312)
T KOG3024|consen 92 AELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEAR-RHF 150 (312)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHH-hHh
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.65 E-value=1e+02 Score=34.49 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhcC
Q 004811 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR---TGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 507 (729)
...+-.++-..|....+|+.-++..+..-.+-.... -.....+.+..+.++.+ -|+-++|+...-.+++.-
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~---vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e--- 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLK---VVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE--- 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhh---hhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc---
Confidence 345556777788888899888777665544310000 00111122233333433 466777777766666642
Q ss_pred CCCCChHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-HHHH
Q 004811 508 VPGVPPEEIASGLTDVSSIYES---------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDS 577 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A 577 (729)
+...| ..+...|++|.. .+..+.|+.+|++|.+..|... .=.+++.++...|+ |+..
T Consensus 274 --g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~--------sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 274 --GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY--------SGINLATLLRAAGEHFENS 340 (1226)
T ss_pred --CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh--------ccccHHHHHHHhhhhccch
Confidence 22222 235555666543 4567789999999988766441 11356666666663 3444
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHH
Q 004811 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLA---CVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~ 629 (729)
.++-.-++.+-.-++..........|...|.. -...++|.+|+...+...++
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 44333333332222222211111122222211 12345677777666666555
No 473
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.20 E-value=98 Score=23.44 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHHH
Q 004811 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEKR 688 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~~ 688 (729)
...|.-....|++++|+.+|.++++.+..... ..+|.....+.
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 33445566789999999999999998877653 33444433333
No 474
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.83 E-value=82 Score=24.23 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
..+...|..+-..|+.++|+.+|++++........
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 33444555556668888888888888888776533
No 475
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=52.08 E-value=2.6e+02 Score=28.01 Aligned_cols=178 Identities=12% Similarity=0.041 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
.|....+++.+|...+..|+|..|-.++-....+... ..+... ..|..+| .-....+|+.|++-+.+..+...
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~-----~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSD-----PDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCC-----cchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHc
Confidence 6888899999999999999999999988777766433 233233 3343343 33446789999999988887765
Q ss_pred hCCCCCCcHHHHHHHH----HHH---HHH-cCCHHHHHHHH------HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-
Q 004811 549 DAPGQQSTVAGIEAQM----GVM---YYM-LGNYSDSYDSF------KNAISKLRAIGERKSAFFGVALNQMGLACVQR- 613 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~l----a~~---~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 613 (729)
...-... ...+... -+. ++. -+--+.-++.| -.|++. ..+..+..|+.+..-.
T Consensus 199 s~~f~~~--~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 199 SKSFSTS--AQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVTNK 266 (432)
T ss_pred ccccccH--HHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhcch
Confidence 4422211 1111111 111 111 11112222222 122221 1234555666555544
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
.....+++-+-+.++.-.-.+. +|- ...-.|+.-.=+++.|...++++-+..
T Consensus 267 ~~rr~~lkdlvkVIqqE~ysYk--DPi-----teFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESYSYK--DPI-----TEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HhhHHHHHHHHHHHHHhccccC--CcH-----HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 4455566666665554211111 332 223345555668999998888876653
No 476
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=51.68 E-value=3e+02 Score=28.66 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhcCC----C----CCChHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHhC
Q 004811 491 RESKSYCENALRIYEKPV----P----GVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 491 ~~A~~~~~~al~~~~~~~----~----~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~ 550 (729)
..|+.+|+..+..+.... + .+.......++..+|++|.+. +.+..++.+|+.++..+...
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~ 342 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKH 342 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788888888776421 1 112233567888999998875 34556666666666665554
No 477
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.50 E-value=1e+02 Score=30.03 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
.......++=..+...++++.|..+.++.+.+ .|..+.-+...|.+|.++|.+.-|+..+...++.+.
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34555666777888999999999999999998 788788888899999999999999999999888743
No 478
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.25 E-value=39 Score=20.26 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999998765
No 479
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.18 E-value=85 Score=31.85 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhCCCC
Q 004811 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS-KLRAIGERK 595 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~ 595 (729)
......++......+.....+....+|+.......+ .+..+...+-.+....++|.-+..++..-+. +.......+
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~---qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~ 178 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG---QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLD 178 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc---chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCC
Confidence 344555666666777777777778888777655433 3344555667777788888877776654332 222222223
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
+......+++-|.+|...++++.|+.+|+.++.+
T Consensus 179 ~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 179 PKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3333444555578888999999999999999875
No 480
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.94 E-value=2.5e+02 Score=27.58 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc-----hHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-----RVGETCRYL-AEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
.+-.-++.+.-..+|..|+..++++++..........+ +..-.+..+ ..++..+++|.+++.+..+....-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34556667777789999999999999886332111111 111222222 246778899999998876665544433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV-ASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
. +.++..-..+|.+.+++...++.-..-+.. ..+..-+.. ..+-..+-.++.=+|.+.+|.+...
T Consensus 117 P-------pkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 P-------PKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3 345666677888999998888766544431 111111221 1222334455566899999988763
No 481
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.69 E-value=3.8e+02 Score=31.42 Aligned_cols=182 Identities=16% Similarity=0.082 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCC--
Q 004811 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSP-- 386 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~-- 386 (729)
+..|+..|...|++++|++.+.+...-.. ..+......+-.+-..+...+.- +-..++-.-.++..+..+-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 56788888889999999888888766321 01233333444444444444433 44444444444333322211
Q ss_pred --CCHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--------cCCHHHHHHH-
Q 004811 387 --ASLEEAA-DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS--------LSRYDEAGFA- 454 (729)
Q Consensus 387 --~~~~~a~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~- 454 (729)
.....+. .-...-.-|......+-++.|++.++......+. ..+..++..|.. .++-+++.+.
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-----~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-----LLHTVLLKLYLEKVLEQASTDGKGEEAPETT 657 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-----HHHHHHHHHHHHHHhhccCchhccccchhhh
Confidence 0000000 0111222345566777888888887654333222 112222222221 2223344444
Q ss_pred -HHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 455 -YQKALTAFKTNKGENHP-------AVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 455 -~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
.++.....+.. ..-+| .....|...+.++.++|+.++|+..|-..+.
T Consensus 658 ~rekl~~~l~~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 658 VREKLLDFLESS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhhh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33333322211 11111 1245667778888889999988888766554
No 482
>PRK12798 chemotaxis protein; Reviewed
Probab=50.61 E-value=3.2e+02 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (729)
..+|..++..-...|+.+-|...-.+++.+.
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 3455555555555555555555555555554
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.34 E-value=82 Score=35.12 Aligned_cols=182 Identities=15% Similarity=0.201 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhC
Q 004811 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY---MLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
...+..++-..|....+|+.-+++.+....+ |+...... ...+.+..+.++. +-|+-++|+...-.+++. .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve-~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~---eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVE-THNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK---EG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhc-cCceEEEeeehhcccCCCccHHHHHHHHHHHHHh---cC
Confidence 3556667777888888888777666543332 21111000 0001111222222 346777777766665553 23
Q ss_pred CCCChHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHH
Q 004811 593 ERKSAFFGVALNQMGLACVQ---------RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-LDDAI 662 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~ 662 (729)
... ...+...|++|.. .+..+.|+++|++|.+. .|... .=.++|.++...|+ |+...
T Consensus 275 ~va----pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--------eP~~~-sGIN~atLL~aaG~~Fens~ 341 (1226)
T KOG4279|consen 275 PVA----PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--------EPLEY-SGINLATLLRAAGEHFENSL 341 (1226)
T ss_pred CCC----CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--------Cchhh-ccccHHHHHHHhhhhccchH
Confidence 222 2345555666543 35578899999999887 45432 34567777777774 44444
Q ss_pred HHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHH---HHhCCHhHHHHHHHHHHHhhccc
Q 004811 663 EILEFVVGIREEKLGT-ANPDVDDEKRRLAELL---KEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 663 ~~~~~al~~~~~~~g~-~~p~~~~~~~~La~~~---~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++-.-.+.+ ..++|. ..-.....|...|..+ ...+++.+|+ +.-+...++.|-
T Consensus 342 Elq~IgmkL-n~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kai-qAae~mfKLk~P 398 (1226)
T KOG4279|consen 342 ELQQIGMKL-NSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAI-QAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHH-HHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHH-HHHHHHhccCCc
Confidence 444433333 223331 2222233333333322 3457899999 888999999886
No 484
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=49.99 E-value=41 Score=20.18 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999999987664
No 485
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.61 E-value=2.3e+02 Score=26.74 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=46.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
-+.+.+...+|+...+.-++. .|........+-.+|+-.|+|++|...++-+-++
T Consensus 10 eLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 455677888888887776665 7888888889999999999999999999888777
No 486
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.89 E-value=90 Score=29.31 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.-+++.+...+|+...+.-++. .|........|-.+|.-.|+|++|...++-+-.
T Consensus 9 seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3455667788888888777766 777777778888888889999998877765543
No 487
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=47.43 E-value=3.5e+02 Score=28.18 Aligned_cols=58 Identities=16% Similarity=-0.019 Sum_probs=39.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 004811 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYT 332 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 332 (729)
.+..++..++|..|...|..++..... +... .....+..+ |..++..-++++|..+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~--~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS--AVNH--TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC--hhhh--hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 455778899999999999999866311 1122 223334444 445567778899999988
No 488
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.51 E-value=48 Score=19.42 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
|+++.|...|++++.. .|....++...+..
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHH
Confidence 5678899999999988 56666666655543
No 489
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=45.48 E-value=1.3e+02 Score=22.65 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (729)
..|.-....|++++|+.+|..+++.+.....
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444556679999999999999998877663
No 490
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.21 E-value=3.4e+02 Score=26.78 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-C---ChHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHh
Q 004811 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG-V---PPEEIASGLTDVS-SIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~---~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
..+-.-+..+.-..+|..|+..++++++........ . ...+.-..+.-+| .++..++++.+++.+.-+-.+.-++
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344455677777889999999999999987332101 1 1112222233333 4567789998887765544433222
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-SAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
.+ +.++-.-..+|.+.+++....+.-..-+.- -.+.. +.+-..+-..+-.++.=+|.+++|.++..
T Consensus 116 lP------pkIleLCILLysKv~Ep~amlev~~~WL~~---p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 116 LP------PKILELCILLYSKVQEPAAMLEVASAWLQD---PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred CC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC---cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 22 344444566788899988776665544432 11111 11222333344455566799999988763
No 491
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=43.08 E-value=40 Score=30.01 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhC------CC------------------------C--CCcHHHHHHHHHHH
Q 004811 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDA------PG------------------------Q--QSTVAGIEAQMGVM 567 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~------------------------~--~~~~~~~~~~la~~ 567 (729)
....+......|+.++|...+.++....... +. . ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 4456777888899999999998887765421 00 0 01122334566778
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
.++.|+...|...++.+-.-..-....-|-.........+..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999887765422000000000111223445667888999999999999998875
No 492
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=6e+02 Score=29.48 Aligned_cols=310 Identities=12% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004811 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (729)
...-.+|...|+|++|+++....-+..... +...|..++..++|..|.++|.+.. .
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~V-----------l~~qAdf~f~~k~y~~AA~~yA~t~-------------~ 417 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETV-----------LLKQADFLFQDKEYLRAAEIYAETL-------------S 417 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHhh-------------h
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHhcCCC
Q 004811 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR----ESKSYCENALRIYEKPVP 509 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----~A~~~~~~al~~~~~~~~ 509 (729)
..-..+.-+....+.+.-..++.+=|+... ........+.+...+-..+.+.++.+ +++..++.-.+...+-+.
T Consensus 418 ~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt--~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~ 495 (911)
T KOG2034|consen 418 SFEEVALKFLEINQERALRTFLDKKLDRLT--PEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFS 495 (911)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--hHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHH
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 004811 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN------ 583 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 583 (729)
.........+-.....-......-.+=+-+|..++.-+... -..+..+++|++|++.+..
T Consensus 496 ~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~v--------------v~~~~q~e~yeeaLevL~~~~~~el 561 (911)
T KOG2034|consen 496 KFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFV--------------VSYWIQQENYEEALEVLLNQRNPEL 561 (911)
T ss_pred HHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhccchhh
Q ss_pred ---------------HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811 584 ---------------AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 584 ---------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
.+..+...++..+.........+-.-.........++.+++-++.. ....-.+..++
T Consensus 562 ~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~--------l~~~~~~ihn~ 633 (911)
T KOG2034|consen 562 FYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEV--------LGMTNPAIHNS 633 (911)
T ss_pred HHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHh--------ccCcCHHHHHH
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.......+..+....+++.+-...... ..+++.+.-+..-...-...=...-.. ..++.++++
T Consensus 634 ll~lya~~~~~~ll~~le~~~~~~~~~--~YDl~~alRlc~~~~~~ra~V~l~~~l-~l~~~aVdl 696 (911)
T KOG2034|consen 634 LLHLYAKHERDDLLLYLEIIKFMKSRV--HYDLDYALRLCLKFKKTRACVFLLCML-NLFEDAVDL 696 (911)
T ss_pred HHHHhhcCCccchHHHHHHHhhccccc--eecHHHHHHHHHHhCccceeeeHHHHH-HHHHHHHHH
No 493
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.66 E-value=3.5e+02 Score=26.45 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004811 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
.-+.|+.+-..++.+.|.+.. +|...-.+...+ .+..+-++++...+ .+.|....+|...-.+..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYT--------VW~yRr~iL~~l~~dL~~El~~l~eI~------e~npKNYQvWHHRr~ive 123 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYT--------VWQYRRVILRHLMSDLNKELEYLDEII------EDNPKNYQVWHHRRVIVE 123 (318)
T ss_pred cCHHHHHHHHHHHHhCcccch--------HHHHHHHHHHHhHHHHHHHHHHHHHHH------HhCccchhHHHHHHHHHH
Confidence 345677777777777766542 233333333322 34556666666554 356666778888878888
Q ss_pred HcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811 444 SLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 444 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
..|++. .-+++...++.. +...-.+|...-.+...-+.++.-+.+..+.++.
T Consensus 124 ~l~d~s~rELef~~~~l~~--------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDD--------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HhcCcccchHHHHHHHHhc--------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888877 667777777775 5666778888888888888899999998888876
No 494
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.65 E-value=1.6e+02 Score=25.35 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
..+|+-++-.+.+....+- ....+..+..+|.+|.+.|+..+|-+++.+|-+
T Consensus 97 v~~~kkDqLdki~~~l~kn--------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKN--------EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4455555555555554432 233445789999999999999999999998875
No 495
>COG3899 Predicted ATPase [General function prediction only]
Probab=39.04 E-value=7.2e+02 Score=29.42 Aligned_cols=260 Identities=16% Similarity=0.033 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004811 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.+..++..|+.....-. +.+|+.++..++.+.......+...-....+......-+..+++..+..++...+..
T Consensus 438 l~~l~l~Ag~ka~~~~a-~~~A~~~~~~~~~ll~~~~~~~~~~l~l~~~~~~~~~a~~~~~~~~~e~~~~~~~~~----- 511 (849)
T COG3899 438 LAELNLLAGRKAKLRSA-YSAAISYLERGLSLLLADAWQNQYLLALMLHRLAAENAYLRGQFELSESLIEVVLIC----- 511 (849)
T ss_pred HHHHHHhcchhhhhchh-hHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH-----
Confidence 34455555665555555 899999999999887554322111111111222222223345555555555533322
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH--HHHHHhcCHHHHHHHHHHHH
Q 004811 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA--EAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al 377 (729)
..........+......+..+++...|+..-..++......+... + ..+....+ ......++ ......+
T Consensus 512 -~~~~~~~~~~~~~~i~~~~~q~~~~~ai~~~~~~l~~l~~~~~~~-~--~~~~~~~~~~~~~~~~~~-----~~~~~~~ 582 (849)
T COG3899 512 -AASNLDGAKVYELVIQAYTAQKQRLEAIALGQNALQLLGIAFPEK-P--CLAELNQAGEEINQLLGD-----RAIEELL 582 (849)
T ss_pred -hhhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccc-c--chHHHHHHHHHHHHhhhh-----hhHHHHH
Confidence 112222334455555556677777777777555554433222111 1 11111111 11111111 0011111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH----HHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHH
Q 004811 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV----LASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAG 452 (729)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 452 (729)
..+....+... ....+......+-+..+...+. .........++......++...+.+... .+++..+.
T Consensus 583 -~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gn~~~s~~~~~~~~~~~~~~~~~~~~~y 656 (849)
T COG3899 583 -NLPAMTDPDKL-----AALRILLNLILALFLTAPNLFPLIILTIVTLSLKYGNSSESAAAYVRYGDILNSFLGDFEKAY 656 (849)
T ss_pred -hChhccchhHH-----HHHHHHHHhhHHHHhhchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111111111 1111111111111222222222 2223333445555556666666655544 47888888
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Q 004811 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL--RESKSYCENALRI 503 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 503 (729)
.+...++....... .......++..+......... .+++..++..+..
T Consensus 657 ~~~~~a~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (849)
T COG3899 657 EFGKLALQLLEKFN---AKELKSKWYLEAGVFILHWNDHLKETISLFKEGLVA 706 (849)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 88888888765543 333444455555555544444 4455555555444
No 496
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.96 E-value=2.7e+02 Score=32.43 Aligned_cols=99 Identities=13% Similarity=-0.022 Sum_probs=52.1
Q ss_pred HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004811 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (729)
...+++..|+-.+..++......+........-...-+..+-..|....|+.+|.+++..++...-.. .....++.++
T Consensus 286 see~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~--~edh~~f~i~ 363 (960)
T KOG1938|consen 286 SEEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSF--AEDHLYFTIL 363 (960)
T ss_pred CcCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcch--hHHhHHHhHH
Confidence 34455666666666666665333222221111112235566677788999999999998765422111 1223455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 004811 608 LACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~ 629 (729)
..|.-.+ .+.|-..+.+.+..
T Consensus 364 ~~y~l~~-~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 364 HVYLLCQ-EDDADEEFSKLIAD 384 (960)
T ss_pred Hhhhhhc-chhHHHHHHHHHhh
Confidence 6443333 34555555555544
No 497
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=38.47 E-value=1.8e+02 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=29.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHc-CCCChhHHHHHHH
Q 004811 648 LAGTYDAIGRLDDAIEILEFVVGIREEKL-GTANPDVDDEKRR 689 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~-g~~~p~~~~~~~~ 689 (729)
.|.-....|++++|+.+|..+++.+.... ...+|.....+..
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~ 54 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQ 54 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34445667999999999999999887755 3445554444433
No 498
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.04 E-value=1.7e+02 Score=30.30 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
+.+...+|.+|-..+++++|+.+|++++.+..+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 456677899999999999999999999998776
No 499
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.18 E-value=5.2e+02 Score=27.22 Aligned_cols=351 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCH
Q 004811 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL 324 (729)
Q Consensus 245 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 324 (729)
+++|.++++...........-..-..+|..-+..|+---|.-.-++. ...+..++.+-.|...-|+|
T Consensus 223 ~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm-------------~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 223 LERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKM-------------TPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhc-------------CCchHhHHHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHH
Q 004811 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD-IHKDNGSPASLEEAADRRLMGLICE 403 (729)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~a~~~~~lg~~~~ 403 (729)
+.|...+.+++.-.+++ .-.|.....++.+-......+-...|..++...+. +..+...+.++..-.....--.++.
T Consensus 290 ~~ar~aalqil~EmKei--GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 290 EDARKAALQILGEMKEI--GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Q ss_pred HhCCHHHHHHHHHHHH--HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811 404 TKGDHEAALEHLVLAS--MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (729)
...+.+-|...-...- .-....+........|.++-.+.+.....+.-..+|+..+-.. ..........+-
T Consensus 368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-------y~p~~~~m~~~l 440 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-------YFPHSQTMIHLL 440 (625)
T ss_pred HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-------ecCCchhHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHHHHHHHH
Q 004811 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-------------ELEQAIKLLQKALKIYN 548 (729)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------------~~~~A~~~~~~al~~~~ 548 (729)
++....|.++---+.+...+.. .+.........+-.++.... .+.+......++.+..+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~--------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEY--------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHh--------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
........-+..+..++.++.+.|.+++|.+++.-.+..-.++.... ...++..+-..-...+...+|+.+++-++.
T Consensus 513 ~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p---~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 513 IRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP---LLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
No 500
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=37.15 E-value=3.1e+02 Score=24.53 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
.++-+-|...++..+... +..-.-.+...+...-...|.|.+|..++.+.++. ........+|..++.
T Consensus 70 ~~N~eLa~~tLEnLvt~s-------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~n-----k~YSeistsYaRi~w 137 (220)
T PF10858_consen 70 KNNSELAFNTLENLVTNS-------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN-----KEYSEISTSYARINW 137 (220)
T ss_pred cCcHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh-----hhHHHHHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (729)
+.....+-..-+.--.+..+.+.-..+...++.+.+-...+..-.+.|+..+|++.++..+.. ......+-
T Consensus 138 c~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~S---------nn~SdllK 208 (220)
T PF10858_consen 138 CCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLAS---------NNVSDLLK 208 (220)
T ss_pred HHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------cchHHHHH
Q ss_pred HHHHHHHH
Q 004811 647 NLAGTYDA 654 (729)
Q Consensus 647 ~la~~~~~ 654 (729)
.-|.++..
T Consensus 209 dQAKaLl~ 216 (220)
T PF10858_consen 209 DQAKALLV 216 (220)
T ss_pred HHHHHHHh
Done!