Query 004812
Match_columns 729
No_of_seqs 1564 out of 3103
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 13:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.7E-45 8E-50 363.4 25.4 415 213-717 74-488 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.4E-43 3E-48 352.2 30.2 420 208-717 103-522 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 1.7E-31 3.7E-36 297.9 48.7 421 220-717 126-574 (615)
4 KOG1840 Kinesin light chain [C 100.0 1.7E-30 3.6E-35 268.5 48.0 421 217-697 84-505 (508)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-31 1.4E-35 311.5 43.1 424 202-717 446-869 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-30 7.6E-35 305.2 44.7 442 196-717 338-835 (899)
7 TIGR00990 3a0801s09 mitochondr 100.0 2.4E-30 5.3E-35 288.6 39.2 414 192-673 132-573 (615)
8 PRK11447 cellulose synthase su 100.0 1.7E-29 3.6E-34 299.8 47.5 455 193-717 118-703 (1157)
9 PRK11447 cellulose synthase su 100.0 5.1E-29 1.1E-33 295.7 48.7 448 200-713 160-739 (1157)
10 KOG2002 TPR-containing nuclear 100.0 6.5E-29 1.4E-33 261.4 39.9 460 208-725 257-758 (1018)
11 KOG0547 Translocase of outer m 100.0 1.7E-28 3.8E-33 239.2 35.7 397 219-674 113-569 (606)
12 KOG1840 Kinesin light chain [C 100.0 7.7E-27 1.7E-31 241.4 41.5 291 423-716 190-481 (508)
13 KOG2002 TPR-containing nuclear 100.0 1.2E-26 2.6E-31 244.4 40.7 433 208-713 151-592 (1018)
14 PRK10049 pgaA outer membrane p 100.0 3.3E-25 7.3E-30 251.6 44.0 436 215-717 9-459 (765)
15 PRK15174 Vi polysaccharide exp 100.0 3.7E-25 8.1E-30 245.7 43.4 362 268-703 45-410 (656)
16 PRK15174 Vi polysaccharide exp 100.0 2E-25 4.4E-30 247.9 39.8 365 276-717 16-384 (656)
17 KOG0547 Translocase of outer m 100.0 5.3E-25 1.2E-29 215.0 34.9 392 265-716 115-568 (606)
18 PRK09782 bacteriophage N4 rece 99.9 5.5E-24 1.2E-28 241.0 43.4 459 192-717 49-709 (987)
19 PRK10049 pgaA outer membrane p 99.9 1.4E-23 3.1E-28 238.3 38.8 414 198-671 26-456 (765)
20 KOG2003 TPR repeat-containing 99.9 2E-23 4.4E-28 201.6 25.5 422 221-717 201-692 (840)
21 KOG2003 TPR repeat-containing 99.9 1.6E-22 3.5E-27 195.4 25.6 409 215-699 231-709 (840)
22 PRK14574 hmsH outer membrane p 99.9 3.2E-20 6.8E-25 206.4 47.2 437 213-717 26-516 (822)
23 KOG0548 Molecular co-chaperone 99.9 8.9E-22 1.9E-26 196.0 30.9 412 223-717 4-458 (539)
24 KOG1126 DNA-binding cell divis 99.9 9.6E-23 2.1E-27 207.9 23.8 303 352-717 319-623 (638)
25 PRK09782 bacteriophage N4 rece 99.9 2.5E-21 5.5E-26 219.5 38.0 361 262-700 373-760 (987)
26 KOG1130 Predicted G-alpha GTPa 99.9 4.6E-22 9.9E-27 190.3 25.4 330 270-616 22-371 (639)
27 PRK11788 tetratricopeptide rep 99.9 8.5E-21 1.8E-25 201.4 38.2 309 351-713 36-346 (389)
28 KOG1155 Anaphase-promoting com 99.9 2.7E-20 5.8E-25 181.3 35.2 375 265-717 164-539 (559)
29 KOG1130 Predicted G-alpha GTPa 99.9 1.2E-21 2.6E-26 187.4 25.1 330 357-702 24-373 (639)
30 PRK11788 tetratricopeptide rep 99.9 1.9E-20 4E-25 198.8 36.7 308 310-670 37-346 (389)
31 KOG1155 Anaphase-promoting com 99.9 9.7E-20 2.1E-24 177.5 37.9 373 220-670 163-535 (559)
32 KOG1173 Anaphase-promoting com 99.9 3.3E-20 7.1E-25 185.4 35.3 430 221-717 49-521 (611)
33 KOG1126 DNA-binding cell divis 99.9 2.3E-21 5E-26 197.9 25.1 300 310-671 319-620 (638)
34 PLN03081 pentatricopeptide (PP 99.9 1.6E-19 3.4E-24 204.9 38.0 433 195-714 95-557 (697)
35 KOG4162 Predicted calmodulin-b 99.9 1.9E-18 4.2E-23 178.9 39.9 434 219-717 321-786 (799)
36 PLN03218 maturation of RBCL 1; 99.9 1.5E-17 3.2E-22 190.4 50.5 417 218-714 367-783 (1060)
37 KOG2076 RNA polymerase III tra 99.9 7E-19 1.5E-23 185.3 36.1 392 266-713 140-554 (895)
38 PRK14574 hmsH outer membrane p 99.9 2.5E-18 5.4E-23 191.3 40.8 418 193-672 40-514 (822)
39 KOG1173 Anaphase-promoting com 99.9 4.7E-19 1E-23 177.2 29.9 418 220-695 81-534 (611)
40 KOG2076 RNA polymerase III tra 99.9 1.1E-18 2.4E-23 183.8 33.8 353 308-715 139-513 (895)
41 PLN03218 maturation of RBCL 1; 99.9 1.9E-17 4E-22 189.6 44.9 373 226-671 411-783 (1060)
42 KOG1174 Anaphase-promoting com 99.8 8.2E-17 1.8E-21 154.8 37.8 424 219-717 41-503 (564)
43 PLN03081 pentatricopeptide (PP 99.8 3.9E-18 8.5E-23 193.5 34.1 369 221-670 158-556 (697)
44 KOG0624 dsRNA-activated protei 99.8 3.9E-17 8.5E-22 153.3 32.9 333 260-671 33-370 (504)
45 PLN03077 Protein ECB2; Provisi 99.8 2.2E-17 4.9E-22 192.1 36.6 150 196-376 231-380 (857)
46 KOG0548 Molecular co-chaperone 99.8 4.5E-17 9.8E-22 162.7 33.1 415 198-697 13-473 (539)
47 PRK04841 transcriptional regul 99.8 8.5E-16 1.8E-20 181.4 50.1 420 221-673 341-762 (903)
48 PRK04841 transcriptional regul 99.8 8.2E-15 1.8E-19 173.0 49.9 423 264-717 340-763 (903)
49 KOG1129 TPR repeat-containing 99.8 1.5E-17 3.3E-22 155.0 20.2 245 433-724 224-470 (478)
50 KOG0495 HAT repeat protein [RN 99.8 1E-14 2.2E-19 148.2 41.0 427 212-717 401-883 (913)
51 PLN03077 Protein ECB2; Provisi 99.8 4.7E-16 1E-20 181.1 36.6 429 193-714 259-720 (857)
52 KOG1129 TPR repeat-containing 99.8 1.4E-17 2.9E-22 155.3 18.2 283 359-693 188-472 (478)
53 KOG0624 dsRNA-activated protei 99.8 1.7E-15 3.8E-20 142.3 32.3 339 215-649 32-382 (504)
54 KOG1156 N-terminal acetyltrans 99.8 1.1E-14 2.5E-19 148.4 40.6 421 221-711 7-465 (700)
55 KOG0495 HAT repeat protein [RN 99.8 1.5E-15 3.3E-20 154.1 32.4 374 212-671 507-880 (913)
56 KOG4162 Predicted calmodulin-b 99.8 4E-15 8.8E-20 154.6 36.1 438 225-724 288-761 (799)
57 KOG1174 Anaphase-promoting com 99.8 6.5E-15 1.4E-19 141.9 33.1 289 346-697 228-518 (564)
58 PF13429 TPR_15: Tetratricopep 99.7 1.6E-17 3.5E-22 166.9 13.6 266 270-588 13-278 (280)
59 KOG1941 Acetylcholine receptor 99.7 1.3E-14 2.8E-19 137.5 31.8 345 222-588 7-361 (518)
60 PF13429 TPR_15: Tetratricopep 99.7 2.3E-17 5E-22 165.7 13.9 266 396-714 12-277 (280)
61 PRK12370 invasion protein regu 99.7 4.7E-15 1E-19 162.7 32.5 265 395-716 261-537 (553)
62 KOG1941 Acetylcholine receptor 99.7 1.9E-14 4E-19 136.4 31.1 345 268-629 9-360 (518)
63 COG3063 PilF Tfp pilus assembl 99.7 1.1E-15 2.3E-20 136.9 21.5 209 470-717 31-239 (250)
64 KOG1127 TPR repeat-containing 99.7 7.1E-15 1.5E-19 156.0 31.2 437 210-714 481-996 (1238)
65 PRK12370 invasion protein regu 99.7 2.1E-15 4.6E-20 165.4 28.2 263 224-545 261-534 (553)
66 TIGR02521 type_IV_pilW type IV 99.7 2.6E-15 5.7E-20 146.9 25.6 208 470-716 27-234 (234)
67 TIGR00540 hemY_coli hemY prote 99.7 4E-14 8.8E-19 149.6 35.9 312 350-714 84-399 (409)
68 KOG1156 N-terminal acetyltrans 99.7 3.2E-13 7E-18 137.9 40.3 443 209-714 29-511 (700)
69 TIGR00540 hemY_coli hemY prote 99.7 1.7E-14 3.6E-19 152.5 32.7 318 221-593 84-405 (409)
70 PRK11189 lipoprotein NlpI; Pro 99.7 2.4E-15 5.3E-20 151.1 25.0 247 406-699 40-286 (296)
71 KOG1915 Cell cycle control pro 99.7 8.7E-13 1.9E-17 129.6 41.0 432 219-717 71-539 (677)
72 KOG2376 Signal recognition par 99.7 6.3E-13 1.4E-17 134.4 40.4 431 222-717 13-490 (652)
73 COG3063 PilF Tfp pilus assembl 99.7 3.6E-15 7.9E-20 133.5 21.6 209 305-550 32-240 (250)
74 cd05804 StaR_like StaR_like; a 99.7 1E-13 2.2E-18 145.1 34.9 334 309-678 7-343 (355)
75 TIGR02521 type_IV_pilW type IV 99.7 1E-14 2.2E-19 142.8 25.6 206 428-671 27-232 (234)
76 COG2956 Predicted N-acetylgluc 99.7 1.9E-13 4.2E-18 128.1 32.0 299 356-711 41-344 (389)
77 KOG1127 TPR repeat-containing 99.7 6.4E-14 1.4E-18 148.9 32.1 374 278-717 471-882 (1238)
78 PRK10747 putative protoheme IX 99.7 1.7E-13 3.7E-18 144.0 35.7 303 350-715 84-391 (398)
79 COG2956 Predicted N-acetylgluc 99.7 2.1E-13 4.6E-18 127.8 31.5 275 227-550 41-315 (389)
80 KOG1125 TPR repeat-containing 99.7 2.5E-15 5.3E-20 151.7 19.8 269 270-577 290-561 (579)
81 cd05804 StaR_like StaR_like; a 99.7 3.6E-14 7.8E-19 148.6 29.4 339 217-595 2-344 (355)
82 PRK10747 putative protoheme IX 99.7 5.2E-14 1.1E-18 147.9 30.4 308 221-588 84-391 (398)
83 KOG0550 Molecular chaperone (D 99.7 9.1E-15 2E-19 141.3 22.2 290 305-629 46-350 (486)
84 PRK11189 lipoprotein NlpI; Pro 99.7 1.8E-14 3.9E-19 144.8 25.7 221 238-503 42-265 (296)
85 KOG0550 Molecular chaperone (D 99.7 1.4E-14 3.1E-19 139.9 23.2 291 219-549 47-353 (486)
86 KOG2376 Signal recognition par 99.7 3.3E-12 7.2E-17 129.3 40.1 462 190-704 15-511 (652)
87 KOG1125 TPR repeat-containing 99.7 8.3E-15 1.8E-19 148.0 20.5 270 396-704 289-562 (579)
88 KOG3785 Uncharacterized conser 99.6 8E-13 1.7E-17 125.1 30.0 401 232-720 33-497 (557)
89 KOG1915 Cell cycle control pro 99.6 1.9E-11 4.1E-16 120.3 38.8 390 265-714 73-500 (677)
90 PF12569 NARP1: NMDA receptor- 99.6 2.6E-11 5.5E-16 128.4 41.3 299 266-598 5-345 (517)
91 KOG3785 Uncharacterized conser 99.6 9.1E-12 2E-16 118.1 32.7 391 197-668 32-487 (557)
92 KOG2300 Uncharacterized conser 99.5 2E-09 4.3E-14 106.7 42.6 458 220-704 45-547 (629)
93 PLN02789 farnesyltranstransfer 99.5 8.8E-12 1.9E-16 124.7 25.6 230 438-716 43-304 (320)
94 TIGR03302 OM_YfiO outer membra 99.5 4.5E-12 9.7E-17 124.0 20.9 181 514-717 30-235 (235)
95 PF14938 SNAP: Soluble NSF att 99.5 5.6E-12 1.2E-16 125.8 21.4 229 392-629 35-266 (282)
96 KOG2047 mRNA splicing factor [ 99.5 4.7E-09 1E-13 107.7 41.6 450 221-715 102-688 (835)
97 TIGR03302 OM_YfiO outer membra 99.5 3.1E-11 6.7E-16 118.0 25.4 195 428-670 29-231 (235)
98 PF12569 NARP1: NMDA receptor- 99.5 1.5E-10 3.3E-15 122.5 32.1 290 310-635 6-340 (517)
99 KOG2047 mRNA splicing factor [ 99.4 6.1E-09 1.3E-13 106.8 39.8 330 346-709 345-718 (835)
100 PLN02789 farnesyltranstransfer 99.4 5.5E-11 1.2E-15 119.0 23.9 208 275-530 47-268 (320)
101 KOG2300 Uncharacterized conser 99.4 1.3E-07 2.8E-12 94.2 46.1 464 220-717 6-517 (629)
102 KOG4340 Uncharacterized conser 99.4 2E-09 4.4E-14 100.1 30.4 225 276-541 21-265 (459)
103 PF14938 SNAP: Soluble NSF att 99.4 6.7E-11 1.4E-15 118.1 22.2 229 349-586 34-265 (282)
104 COG3071 HemY Uncharacterized e 99.3 2.1E-08 4.6E-13 97.9 36.0 304 352-715 86-391 (400)
105 KOG3617 WD40 and TPR repeat-co 99.3 1E-07 2.2E-12 100.5 42.2 425 270-717 831-1362(1416)
106 PRK14720 transcript cleavage f 99.3 2.1E-10 4.6E-15 126.7 22.2 286 343-717 24-309 (906)
107 PF10345 Cohesin_load: Cohesin 99.3 2.9E-06 6.4E-11 94.4 55.2 476 219-712 57-604 (608)
108 COG3071 HemY Uncharacterized e 99.3 9.2E-09 2E-13 100.3 30.0 301 223-588 86-391 (400)
109 KOG4340 Uncharacterized conser 99.3 5.6E-09 1.2E-13 97.2 25.8 394 198-673 21-445 (459)
110 PRK15359 type III secretion sy 99.3 1.3E-10 2.8E-15 102.8 13.8 127 537-697 13-139 (144)
111 PRK15359 type III secretion sy 99.2 1.3E-10 2.7E-15 102.9 12.8 112 578-717 13-124 (144)
112 KOG3617 WD40 and TPR repeat-co 99.2 1.4E-07 3.1E-12 99.3 36.5 342 222-630 758-1175(1416)
113 KOG3060 Uncharacterized conser 99.2 1.1E-08 2.4E-13 93.6 23.7 208 407-654 27-237 (289)
114 PRK10370 formate-dependent nit 99.2 1.5E-09 3.3E-14 101.5 18.7 122 571-717 52-176 (198)
115 PRK15179 Vi polysaccharide bio 99.2 1.4E-09 3.1E-14 119.7 21.5 156 488-672 63-218 (694)
116 KOG1128 Uncharacterized conser 99.2 5.6E-09 1.2E-13 109.1 24.1 253 236-551 359-621 (777)
117 PRK14720 transcript cleavage f 99.2 3.1E-09 6.8E-14 117.7 23.6 237 213-486 23-269 (906)
118 PRK15179 Vi polysaccharide bio 99.2 1.7E-09 3.7E-14 119.1 21.2 158 531-717 63-220 (694)
119 PF10345 Cohesin_load: Cohesin 99.1 4E-05 8.7E-10 85.4 53.7 441 262-715 56-564 (608)
120 KOG1128 Uncharacterized conser 99.1 7.8E-09 1.7E-13 108.0 20.5 224 308-592 398-621 (777)
121 KOG3060 Uncharacterized conser 99.1 3.9E-08 8.4E-13 90.0 21.5 195 488-717 26-223 (289)
122 PRK10370 formate-dependent nit 99.1 8.2E-09 1.8E-13 96.5 17.8 150 398-588 22-174 (198)
123 KOG0553 TPR repeat-containing 99.1 5.2E-10 1.1E-14 105.2 9.6 101 600-717 81-181 (304)
124 COG5010 TadD Flp pilus assembl 99.0 1.8E-08 4E-13 93.2 17.8 168 427-627 62-229 (257)
125 PF13525 YfiO: Outer membrane 99.0 2.4E-07 5.2E-12 87.5 25.8 183 432-662 5-198 (203)
126 PRK15363 pathogenicity island 99.0 1.4E-08 3E-13 87.8 15.7 110 558-688 35-144 (157)
127 TIGR02552 LcrH_SycD type III s 99.0 3.8E-09 8.1E-14 93.2 12.8 102 599-717 16-117 (135)
128 PF13424 TPR_12: Tetratricopep 99.0 2.4E-09 5.1E-14 83.9 9.6 76 597-673 2-77 (78)
129 COG2909 MalT ATP-dependent tra 99.0 7.3E-06 1.6E-10 88.6 38.4 342 217-584 343-685 (894)
130 COG5010 TadD Flp pilus assembl 99.0 3E-08 6.6E-13 91.8 17.7 167 470-669 63-229 (257)
131 KOG0553 TPR repeat-containing 99.0 6E-09 1.3E-13 98.2 13.1 120 558-701 81-200 (304)
132 PF13424 TPR_12: Tetratricopep 99.0 2.1E-09 4.5E-14 84.2 8.7 77 638-716 1-77 (78)
133 PRK15363 pathogenicity island 99.0 8.1E-09 1.8E-13 89.2 12.7 100 599-715 34-133 (157)
134 KOG1839 Uncharacterized protei 99.0 1.7E-07 3.7E-12 105.1 25.6 444 238-690 640-1147(1236)
135 CHL00033 ycf3 photosystem I as 99.0 2.8E-08 6E-13 91.1 16.3 119 557-688 34-159 (168)
136 TIGR02552 LcrH_SycD type III s 99.0 2E-08 4.2E-13 88.6 14.2 111 539-672 5-115 (135)
137 PRK10866 outer membrane biogen 98.9 3.6E-07 7.8E-12 88.3 24.0 188 432-667 32-237 (243)
138 KOG1585 Protein required for f 98.9 3.3E-06 7.1E-11 77.0 27.6 221 392-624 31-251 (308)
139 KOG3616 Selective LIM binding 98.9 1.1E-05 2.5E-10 84.3 35.0 227 267-545 663-910 (1636)
140 KOG3616 Selective LIM binding 98.9 1.8E-05 3.8E-10 83.0 35.0 224 434-711 663-908 (1636)
141 PF13525 YfiO: Outer membrane 98.9 5.7E-07 1.2E-11 84.9 22.4 183 265-494 5-198 (203)
142 PF04733 Coatomer_E: Coatomer 98.9 2.7E-08 5.9E-13 98.5 13.3 258 400-717 9-268 (290)
143 PRK10866 outer membrane biogen 98.9 1.9E-06 4E-11 83.4 25.2 190 473-711 31-238 (243)
144 KOG2471 TPR repeat-containing 98.8 6.4E-06 1.4E-10 82.4 28.3 409 265-711 100-681 (696)
145 TIGR02795 tol_pal_ybgF tol-pal 98.8 5.8E-08 1.3E-12 83.4 12.6 106 601-717 3-108 (119)
146 CHL00033 ycf3 photosystem I as 98.8 7.3E-08 1.6E-12 88.4 13.7 121 470-596 31-151 (168)
147 PRK02603 photosystem I assembl 98.8 4.6E-07 1E-11 83.3 18.7 111 556-679 33-150 (172)
148 PF04733 Coatomer_E: Coatomer 98.8 4.3E-08 9.3E-13 97.1 12.4 253 359-671 10-265 (290)
149 COG2909 MalT ATP-dependent tra 98.8 0.00022 4.7E-09 77.6 40.7 340 262-627 344-686 (894)
150 PRK02603 photosystem I assembl 98.8 1.9E-07 4.2E-12 85.9 15.7 109 257-379 27-142 (172)
151 KOG1585 Protein required for f 98.8 6.3E-06 1.4E-10 75.2 24.5 226 469-709 26-251 (308)
152 PF09976 TPR_21: Tetratricopep 98.8 7.8E-07 1.7E-11 79.1 19.0 123 444-585 23-145 (145)
153 PLN03088 SGT1, suppressor of 98.8 5.4E-08 1.2E-12 100.2 13.1 98 603-717 5-102 (356)
154 KOG1070 rRNA processing protei 98.8 1.2E-06 2.5E-11 98.1 23.4 219 208-461 1445-1663(1710)
155 PLN03088 SGT1, suppressor of 98.8 1.2E-07 2.5E-12 97.8 14.9 113 561-697 5-117 (356)
156 KOG1586 Protein required for f 98.8 8.3E-06 1.8E-10 74.0 24.2 197 363-587 27-224 (288)
157 KOG1839 Uncharacterized protei 98.8 1.4E-06 3E-11 97.9 23.5 400 313-717 670-1131(1236)
158 KOG0543 FKBP-type peptidyl-pro 98.8 1.4E-07 3.1E-12 93.0 14.0 140 562-717 212-358 (397)
159 PF09976 TPR_21: Tetratricopep 98.8 6.2E-07 1.3E-11 79.8 17.1 135 221-377 11-145 (145)
160 TIGR02795 tol_pal_ybgF tol-pal 98.7 3.1E-07 6.7E-12 78.8 13.8 104 559-672 3-106 (119)
161 PF13414 TPR_11: TPR repeat; P 98.7 6.1E-08 1.3E-12 73.8 8.3 66 642-716 3-69 (69)
162 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 3.1E-12 77.0 10.6 99 602-717 2-100 (100)
163 KOG0543 FKBP-type peptidyl-pro 98.7 3.7E-07 8E-12 90.2 14.5 146 219-382 206-358 (397)
164 COG4783 Putative Zn-dependent 98.7 1.5E-06 3.2E-11 87.6 18.9 152 429-629 303-454 (484)
165 KOG1070 rRNA processing protei 98.7 4.1E-06 9E-11 93.8 23.6 211 470-715 1454-1664(1710)
166 PRK10803 tol-pal system protei 98.7 3.8E-07 8.2E-12 88.7 13.7 106 601-717 143-249 (263)
167 KOG1586 Protein required for f 98.7 9.6E-06 2.1E-10 73.6 20.9 196 487-717 27-227 (288)
168 COG4783 Putative Zn-dependent 98.6 1.5E-06 3.3E-11 87.6 17.7 152 218-421 303-454 (484)
169 KOG3081 Vesicle coat complex C 98.6 1.2E-05 2.7E-10 74.6 22.1 255 400-717 16-274 (299)
170 PF13414 TPR_11: TPR repeat; P 98.6 2E-07 4.3E-12 70.9 8.8 64 600-671 3-67 (69)
171 COG3898 Uncharacterized membra 98.6 0.00028 6.1E-09 69.2 31.2 303 226-587 89-392 (531)
172 PF12895 Apc3: Anaphase-promot 98.6 2.7E-07 5.8E-12 73.3 8.7 81 613-711 2-84 (84)
173 PF12895 Apc3: Anaphase-promot 98.6 3.1E-07 6.8E-12 72.9 9.1 84 570-668 1-84 (84)
174 COG3898 Uncharacterized membra 98.6 0.0006 1.3E-08 67.0 31.8 299 357-714 91-392 (531)
175 KOG2471 TPR repeat-containing 98.6 1.4E-05 3E-10 80.2 21.2 338 265-627 240-682 (696)
176 PF12688 TPR_5: Tetratrico pep 98.6 1.7E-06 3.6E-11 72.6 12.7 102 601-713 2-103 (120)
177 KOG3081 Vesicle coat complex C 98.5 6.7E-05 1.4E-09 69.9 22.9 249 359-670 17-269 (299)
178 COG1729 Uncharacterized protei 98.5 1.3E-06 2.9E-11 82.3 12.2 104 603-717 144-247 (262)
179 PF12688 TPR_5: Tetratrico pep 98.5 4.8E-06 1E-10 69.9 14.3 99 559-670 2-103 (120)
180 cd00189 TPR Tetratricopeptide 98.5 7.6E-07 1.7E-11 72.6 9.4 97 434-547 2-98 (100)
181 KOG2053 Mitochondrial inherita 98.5 0.0032 6.9E-08 68.7 38.2 230 232-503 20-255 (932)
182 PRK10803 tol-pal system protei 98.5 4.6E-06 9.9E-11 81.2 15.7 104 559-672 143-247 (263)
183 PF13432 TPR_16: Tetratricopep 98.5 5.1E-07 1.1E-11 67.6 6.7 59 605-671 2-60 (65)
184 PF13432 TPR_16: Tetratricopep 98.4 6.2E-07 1.3E-11 67.2 6.9 63 646-717 1-63 (65)
185 COG5159 RPN6 26S proteasome re 98.4 0.00019 4.2E-09 67.2 23.8 301 354-669 7-312 (421)
186 COG4785 NlpI Lipoprotein NlpI, 98.4 6.6E-05 1.4E-09 67.4 19.8 232 428-702 61-293 (297)
187 KOG4234 TPR repeat-containing 98.4 5.4E-06 1.2E-10 73.2 12.6 119 219-359 93-211 (271)
188 KOG1463 26S proteasome regulat 98.4 0.00029 6.4E-09 67.7 24.5 300 354-669 8-314 (411)
189 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00027 5.8E-09 68.8 26.2 207 474-716 59-267 (291)
190 COG4785 NlpI Lipoprotein NlpI, 98.4 4.2E-05 9.2E-10 68.6 17.2 203 390-629 63-266 (297)
191 KOG4555 TPR repeat-containing 98.4 2E-05 4.4E-10 64.4 13.9 102 221-337 43-144 (175)
192 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00091 2E-08 65.0 29.4 229 363-629 36-265 (291)
193 PF10300 DUF3808: Protein of u 98.3 0.002 4.3E-08 69.0 33.0 189 482-693 196-398 (468)
194 COG4105 ComL DNA uptake lipopr 98.3 0.0002 4.3E-09 67.2 21.6 186 431-664 33-226 (254)
195 KOG4234 TPR repeat-containing 98.3 6.4E-06 1.4E-10 72.7 10.9 123 562-703 99-221 (271)
196 KOG4555 TPR repeat-containing 98.3 2E-05 4.4E-10 64.5 12.8 101 434-547 45-145 (175)
197 PRK11906 transcriptional regul 98.3 3.9E-05 8.5E-10 78.2 17.3 160 311-500 258-433 (458)
198 PF13512 TPR_18: Tetratricopep 98.3 2E-05 4.4E-10 67.1 12.9 107 600-717 10-131 (142)
199 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.9E-10 81.1 15.1 120 563-710 174-293 (395)
200 COG4235 Cytochrome c biogenesi 98.3 1.7E-05 3.7E-10 75.9 13.8 102 599-717 155-259 (287)
201 PRK10153 DNA-binding transcrip 98.3 1.8E-05 4E-10 85.0 15.6 121 573-717 357-485 (517)
202 PRK11906 transcriptional regul 98.2 1.9E-05 4E-10 80.5 14.0 135 561-717 258-404 (458)
203 KOG4648 Uncharacterized conser 98.2 3.4E-07 7.3E-12 87.3 1.4 230 435-717 100-333 (536)
204 PRK15331 chaperone protein Sic 98.2 2E-05 4.2E-10 68.8 12.1 99 306-420 35-133 (165)
205 KOG0985 Vesicle coat protein c 98.2 0.013 2.9E-07 64.6 35.3 156 396-577 1198-1373(1666)
206 PRK15331 chaperone protein Sic 98.2 1.2E-05 2.6E-10 70.0 10.6 99 599-714 36-134 (165)
207 PRK10153 DNA-binding transcrip 98.2 3.6E-05 7.9E-10 82.8 16.4 131 310-461 341-482 (517)
208 COG4105 ComL DNA uptake lipopr 98.2 0.00067 1.5E-08 63.7 22.4 197 473-716 33-234 (254)
209 COG4700 Uncharacterized protei 98.2 0.0003 6.5E-09 61.8 18.4 162 359-550 65-226 (251)
210 COG1729 Uncharacterized protei 98.2 2.7E-05 5.8E-10 73.7 12.1 102 561-672 144-245 (262)
211 PF14559 TPR_19: Tetratricopep 98.2 6.2E-06 1.4E-10 62.4 6.6 66 611-692 2-67 (68)
212 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.5E-05 9.7E-10 78.3 14.4 120 356-500 175-294 (395)
213 KOG1464 COP9 signalosome, subu 98.1 0.00053 1.2E-08 63.8 19.6 242 321-572 40-286 (440)
214 KOG1463 26S proteasome regulat 98.1 0.0063 1.4E-07 58.9 26.9 302 398-716 10-318 (411)
215 PF08631 SPO22: Meiosis protei 98.1 0.0038 8.2E-08 62.2 27.2 256 318-586 3-274 (278)
216 PF13512 TPR_18: Tetratricopep 98.1 0.00011 2.4E-09 62.7 13.4 115 558-687 10-139 (142)
217 COG4235 Cytochrome c biogenesi 98.1 0.00014 2.9E-09 69.9 15.5 116 558-693 156-274 (287)
218 KOG2796 Uncharacterized conser 98.1 0.00078 1.7E-08 62.6 19.4 140 351-505 178-317 (366)
219 PF08631 SPO22: Meiosis protei 98.1 0.006 1.3E-07 60.8 27.8 257 231-502 3-274 (278)
220 KOG2796 Uncharacterized conser 98.1 0.0066 1.4E-07 56.7 25.2 240 266-550 70-319 (366)
221 PF13371 TPR_9: Tetratricopept 98.1 2.3E-05 5E-10 60.2 8.1 58 606-671 1-58 (73)
222 KOG4648 Uncharacterized conser 98.1 1.1E-05 2.4E-10 77.1 7.4 97 604-717 101-197 (536)
223 COG4700 Uncharacterized protei 98.0 0.00058 1.2E-08 60.0 17.1 135 310-464 91-225 (251)
224 KOG1464 COP9 signalosome, subu 98.0 0.0005 1.1E-08 64.0 17.6 240 238-488 43-286 (440)
225 KOG1914 mRNA cleavage and poly 98.0 0.025 5.4E-07 58.5 41.9 441 211-716 10-503 (656)
226 KOG0985 Vesicle coat protein c 98.0 0.037 7.9E-07 61.4 33.1 91 560-662 1281-1374(1666)
227 COG5159 RPN6 26S proteasome re 98.0 0.012 2.6E-07 55.6 25.0 232 312-550 7-239 (421)
228 KOG0890 Protein kinase of the 97.9 0.029 6.4E-07 68.0 33.3 411 226-694 1388-1856(2382)
229 PF02259 FAT: FAT domain; Int 97.9 0.022 4.7E-07 59.4 29.9 151 554-717 142-341 (352)
230 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.2E-05 9E-10 77.8 8.7 69 637-714 70-141 (453)
231 PF13371 TPR_9: Tetratricopept 97.9 3.9E-05 8.5E-10 58.9 6.8 61 648-717 1-61 (73)
232 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.6E-05 1E-09 77.5 8.8 67 597-671 72-141 (453)
233 KOG2053 Mitochondrial inherita 97.9 0.039 8.4E-07 60.6 30.4 230 362-629 21-255 (932)
234 PF13374 TPR_10: Tetratricopep 97.8 3.5E-05 7.6E-10 51.6 4.9 41 642-682 2-42 (42)
235 PF14559 TPR_19: Tetratricopep 97.8 6.1E-05 1.3E-09 56.9 6.5 53 443-503 2-54 (68)
236 KOG2610 Uncharacterized conser 97.8 0.039 8.4E-07 53.6 29.0 165 357-544 110-274 (491)
237 PF02259 FAT: FAT domain; Int 97.8 0.059 1.3E-06 56.1 31.3 50 598-655 250-305 (352)
238 KOG2041 WD40 repeat protein [G 97.8 0.085 1.8E-06 56.2 30.7 124 310-458 694-822 (1189)
239 KOG1914 mRNA cleavage and poly 97.7 0.082 1.8E-06 54.8 37.1 397 262-714 17-464 (656)
240 PF04184 ST7: ST7 protein; In 97.7 0.0016 3.5E-08 66.6 16.5 133 226-376 173-321 (539)
241 PF07079 DUF1347: Protein of u 97.7 0.073 1.6E-06 54.0 41.1 143 268-424 9-160 (549)
242 PF04184 ST7: ST7 protein; In 97.7 0.0034 7.4E-08 64.3 17.9 183 484-717 178-378 (539)
243 PF10300 DUF3808: Protein of u 97.7 0.13 2.9E-06 55.2 34.4 172 404-597 200-386 (468)
244 KOG0545 Aryl-hydrocarbon recep 97.6 0.00065 1.4E-08 62.4 11.2 108 601-717 179-296 (329)
245 KOG1550 Extracellular protein 97.6 0.047 1E-06 60.1 27.6 279 324-671 228-538 (552)
246 PF03704 BTAD: Bacterial trans 97.6 0.0082 1.8E-07 53.4 17.9 125 519-679 8-133 (146)
247 KOG0890 Protein kinase of the 97.6 0.16 3.4E-06 62.2 32.1 357 270-672 1388-1785(2382)
248 KOG4507 Uncharacterized conser 97.6 0.0053 1.2E-07 63.6 17.6 110 211-337 203-312 (886)
249 PF13281 DUF4071: Domain of un 97.5 0.012 2.6E-07 59.7 19.8 181 517-717 141-337 (374)
250 KOG0545 Aryl-hydrocarbon recep 97.5 0.003 6.6E-08 58.2 13.8 114 559-688 179-302 (329)
251 PF13281 DUF4071: Domain of un 97.5 0.056 1.2E-06 54.9 23.9 206 446-671 113-334 (374)
252 PF13374 TPR_10: Tetratricopep 97.5 0.00023 5E-09 47.5 4.9 41 600-640 2-42 (42)
253 KOG4642 Chaperone-dependent E3 97.5 0.00073 1.6E-08 62.0 9.2 100 435-551 13-112 (284)
254 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0013 2.9E-08 63.4 11.2 106 264-382 80-185 (390)
255 PF12968 DUF3856: Domain of Un 97.5 0.018 3.9E-07 46.7 15.6 120 349-468 6-136 (144)
256 KOG2610 Uncharacterized conser 97.4 0.13 2.9E-06 50.0 27.7 167 313-501 108-274 (491)
257 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0042 9.1E-08 60.0 14.1 109 552-672 75-183 (390)
258 COG2976 Uncharacterized protei 97.4 0.029 6.3E-07 50.4 18.3 139 564-717 37-191 (207)
259 COG2976 Uncharacterized protei 97.4 0.037 8E-07 49.7 18.8 98 560-671 91-188 (207)
260 KOG4642 Chaperone-dependent E3 97.4 0.0013 2.8E-08 60.4 9.8 98 562-675 14-111 (284)
261 PF12968 DUF3856: Domain of Un 97.4 0.04 8.7E-07 44.8 16.9 120 516-635 6-135 (144)
262 PF10602 RPN7: 26S proteasome 97.4 0.0075 1.6E-07 55.1 14.9 126 453-587 17-142 (177)
263 PF06552 TOM20_plant: Plant sp 97.4 0.00098 2.1E-08 58.9 8.6 92 616-717 7-112 (186)
264 KOG1550 Extracellular protein 97.4 0.032 6.9E-07 61.4 22.4 268 221-547 244-539 (552)
265 PF09986 DUF2225: Uncharacteri 97.3 0.0055 1.2E-07 57.7 13.4 100 571-671 90-194 (214)
266 KOG2041 WD40 repeat protein [G 97.3 0.35 7.6E-06 51.8 34.4 131 258-418 688-822 (1189)
267 PF09986 DUF2225: Uncharacteri 97.3 0.0048 1E-07 58.1 12.7 101 612-714 89-194 (214)
268 PF13428 TPR_14: Tetratricopep 97.2 0.00074 1.6E-08 45.5 5.1 42 643-692 2-43 (44)
269 PF13428 TPR_14: Tetratricopep 97.2 0.00067 1.5E-08 45.7 4.8 42 601-650 2-43 (44)
270 PF10602 RPN7: 26S proteasome 97.2 0.021 4.6E-07 52.2 16.0 125 415-547 19-143 (177)
271 KOG1258 mRNA processing protei 97.2 0.43 9.4E-06 50.6 38.2 393 208-656 66-489 (577)
272 KOG3783 Uncharacterized conser 97.1 0.48 1E-05 49.7 27.4 221 311-549 270-523 (546)
273 PF13431 TPR_17: Tetratricopep 97.1 0.00049 1.1E-08 43.1 2.8 34 622-663 1-34 (34)
274 PF03704 BTAD: Bacterial trans 97.1 0.034 7.4E-07 49.3 15.8 108 268-383 9-129 (146)
275 KOG1258 mRNA processing protei 97.0 0.64 1.4E-05 49.4 39.0 388 262-717 76-473 (577)
276 PF00515 TPR_1: Tetratricopept 97.0 0.0016 3.5E-08 41.0 4.6 33 684-717 1-33 (34)
277 PF06552 TOM20_plant: Plant sp 97.0 0.01 2.2E-07 52.6 10.8 69 599-675 24-106 (186)
278 PF05843 Suf: Suppressor of fo 97.0 0.0092 2E-07 59.4 12.1 136 560-717 3-139 (280)
279 COG3118 Thioredoxin domain-con 97.0 0.096 2.1E-06 50.5 17.9 138 220-384 133-270 (304)
280 PF00515 TPR_1: Tetratricopept 96.9 0.0028 6E-08 39.8 5.1 30 600-629 1-30 (34)
281 KOG1538 Uncharacterized conser 96.9 0.53 1.2E-05 50.0 23.9 54 564-628 779-832 (1081)
282 PF05843 Suf: Suppressor of fo 96.9 0.017 3.8E-07 57.5 13.3 136 394-549 3-139 (280)
283 PF07719 TPR_2: Tetratricopept 96.8 0.0026 5.6E-08 39.9 4.6 33 684-717 1-33 (34)
284 PF12862 Apc5: Anaphase-promot 96.8 0.032 7E-07 45.0 11.6 81 401-483 7-90 (94)
285 KOG4814 Uncharacterized conser 96.8 1 2.2E-05 48.0 37.0 105 222-339 355-459 (872)
286 PF13431 TPR_17: Tetratricopep 96.7 0.0016 3.5E-08 40.8 2.8 34 330-371 1-34 (34)
287 PF12862 Apc5: Anaphase-promot 96.7 0.037 8E-07 44.6 11.3 83 360-442 8-91 (94)
288 PF13176 TPR_7: Tetratricopept 96.6 0.0051 1.1E-07 39.2 4.9 30 644-673 1-30 (36)
289 PF07719 TPR_2: Tetratricopept 96.6 0.0055 1.2E-07 38.4 4.7 29 601-629 2-30 (34)
290 PF13176 TPR_7: Tetratricopept 96.5 0.0071 1.5E-07 38.5 4.9 33 352-384 1-33 (36)
291 PF07079 DUF1347: Protein of u 96.3 1.7 3.6E-05 44.7 41.3 141 510-668 372-521 (549)
292 PF13181 TPR_8: Tetratricopept 96.3 0.0098 2.1E-07 37.3 4.5 32 685-717 2-33 (34)
293 PRK13184 pknD serine/threonine 96.2 3.5 7.5E-05 47.9 31.7 345 229-627 483-867 (932)
294 COG3118 Thioredoxin domain-con 96.2 0.4 8.6E-06 46.4 16.4 156 520-704 137-292 (304)
295 COG0790 FOG: TPR repeat, SEL1 96.1 0.84 1.8E-05 46.0 19.9 170 272-488 48-236 (292)
296 PF13181 TPR_8: Tetratricopept 96.0 0.017 3.7E-07 36.1 4.8 31 351-381 2-32 (34)
297 KOG4814 Uncharacterized conser 96.0 2.7 5.9E-05 45.0 38.1 107 265-382 354-460 (872)
298 COG0790 FOG: TPR repeat, SEL1 95.9 1.4 3E-05 44.4 20.7 166 443-656 52-236 (292)
299 KOG0376 Serine-threonine phosp 95.9 0.008 1.7E-07 61.5 4.1 96 605-717 9-104 (476)
300 PF04910 Tcf25: Transcriptiona 95.8 0.62 1.3E-05 48.0 17.5 171 427-629 35-222 (360)
301 PF13174 TPR_6: Tetratricopept 95.7 0.018 3.9E-07 35.6 3.9 32 685-717 1-32 (33)
302 KOG0128 RNA-binding protein SA 95.6 4.9 0.00011 44.6 33.1 435 211-704 103-554 (881)
303 KOG0376 Serine-threonine phosp 95.5 0.019 4E-07 58.9 5.0 109 562-694 8-116 (476)
304 KOG4322 Anaphase-promoting com 95.5 3.4 7.4E-05 42.2 27.2 194 470-670 269-470 (482)
305 COG5107 RNA14 Pre-mRNA 3'-end 95.5 3.5 7.6E-05 42.3 30.6 443 211-717 32-534 (660)
306 PF00244 14-3-3: 14-3-3 protei 95.5 2.6 5.5E-05 40.7 22.1 185 477-676 4-203 (236)
307 KOG2581 26S proteasome regulat 95.5 3.3 7.2E-05 41.9 20.3 141 361-505 137-278 (493)
308 KOG1308 Hsp70-interacting prot 95.4 0.0056 1.2E-07 59.6 0.9 93 608-717 122-214 (377)
309 KOG4322 Anaphase-promoting com 95.3 4 8.6E-05 41.7 29.8 199 512-717 268-474 (482)
310 KOG3783 Uncharacterized conser 95.3 4.8 0.0001 42.6 35.7 250 429-717 264-523 (546)
311 PF04910 Tcf25: Transcriptiona 95.3 0.91 2E-05 46.8 16.5 162 210-383 29-226 (360)
312 PF11817 Foie-gras_1: Foie gra 95.1 3.6 7.8E-05 40.1 21.9 93 364-458 152-244 (247)
313 PRK14707 hypothetical protein; 95.0 5.9 0.00013 48.7 23.4 367 311-684 834-1209(2710)
314 PF08424 NRDE-2: NRDE-2, neces 95.0 2.9 6.4E-05 42.6 19.4 148 426-587 13-183 (321)
315 PF13174 TPR_6: Tetratricopept 95.0 0.034 7.4E-07 34.3 3.4 32 351-382 1-32 (33)
316 KOG1538 Uncharacterized conser 95.0 6.4 0.00014 42.4 24.3 116 439-585 710-831 (1081)
317 PF11817 Foie-gras_1: Foie gra 94.9 4 8.7E-05 39.8 23.0 187 352-543 12-244 (247)
318 KOG2581 26S proteasome regulat 94.9 4.9 0.00011 40.7 21.9 143 401-550 135-280 (493)
319 KOG1308 Hsp70-interacting prot 94.9 0.014 3.1E-07 56.9 1.9 92 439-547 121-212 (377)
320 PF12739 TRAPPC-Trs85: ER-Golg 94.7 3.8 8.2E-05 43.5 19.7 178 475-673 209-401 (414)
321 COG5187 RPN7 26S proteasome re 94.7 2.1 4.6E-05 41.1 15.4 136 407-550 90-225 (412)
322 PF10579 Rapsyn_N: Rapsyn N-te 94.7 0.19 4E-06 37.9 6.8 68 221-295 6-73 (80)
323 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.1 2.2E-06 33.4 4.6 36 643-678 2-37 (38)
324 PF12739 TRAPPC-Trs85: ER-Golg 94.5 6 0.00013 42.0 20.8 178 351-550 209-403 (414)
325 PRK14707 hypothetical protein; 94.5 11 0.00024 46.6 23.8 384 313-701 752-1142(2710)
326 PF14561 TPR_20: Tetratricopep 94.5 0.21 4.5E-06 39.6 7.3 71 620-704 8-78 (90)
327 PF04190 DUF410: Protein of un 94.2 6.1 0.00013 38.8 25.7 219 404-656 2-242 (260)
328 PF08424 NRDE-2: NRDE-2, neces 94.2 4.4 9.4E-05 41.3 18.2 147 470-629 15-183 (321)
329 PRK10941 hypothetical protein; 93.9 0.68 1.5E-05 45.3 11.2 82 598-692 179-260 (269)
330 KOG0687 26S proteasome regulat 93.9 7.2 0.00016 38.4 19.1 132 325-463 81-212 (393)
331 KOG4507 Uncharacterized conser 93.8 0.15 3.3E-06 53.3 6.7 93 564-671 613-705 (886)
332 PF00244 14-3-3: 14-3-3 protei 93.7 7 0.00015 37.7 20.3 182 435-632 4-201 (236)
333 PF09613 HrpB1_HrpK: Bacterial 93.7 1.4 2.9E-05 38.9 11.3 86 600-701 10-95 (160)
334 KOG0687 26S proteasome regulat 93.6 4.3 9.3E-05 39.9 15.4 128 415-550 87-214 (393)
335 PF10579 Rapsyn_N: Rapsyn N-te 93.6 1.8 3.9E-05 32.8 10.2 68 477-550 9-76 (80)
336 COG4649 Uncharacterized protei 93.5 5.1 0.00011 35.6 16.0 149 481-670 46-195 (221)
337 COG5187 RPN7 26S proteasome re 93.3 8.1 0.00018 37.3 19.7 135 365-506 90-224 (412)
338 PF04781 DUF627: Protein of un 93.0 1.3 2.9E-05 36.1 9.5 95 398-503 2-107 (111)
339 PF04781 DUF627: Protein of un 92.9 1.1 2.4E-05 36.5 9.0 102 606-714 2-107 (111)
340 smart00028 TPR Tetratricopepti 92.8 0.16 3.4E-06 30.6 3.4 32 685-717 2-33 (34)
341 COG3629 DnrI DNA-binding trans 92.8 2.5 5.4E-05 41.3 13.0 78 599-684 152-229 (280)
342 COG5107 RNA14 Pre-mRNA 3'-end 92.7 14 0.0003 38.3 21.8 232 265-549 302-534 (660)
343 COG3947 Response regulator con 92.7 3.5 7.7E-05 39.8 13.3 79 601-687 280-358 (361)
344 PF11207 DUF2989: Protein of u 92.7 4.3 9.2E-05 37.4 13.4 84 401-494 115-198 (203)
345 PF10516 SHNi-TPR: SHNi-TPR; 92.7 0.36 7.7E-06 30.9 4.7 35 601-635 2-36 (38)
346 PF14853 Fis1_TPR_C: Fis1 C-te 92.3 0.79 1.7E-05 32.0 6.5 40 601-648 2-41 (53)
347 PF09613 HrpB1_HrpK: Bacterial 92.3 1.9 4E-05 38.1 10.2 89 428-533 6-94 (160)
348 COG4976 Predicted methyltransf 92.0 0.24 5.3E-06 45.7 4.5 59 650-717 3-61 (287)
349 smart00101 14_3_3 14-3-3 homol 91.9 12 0.00027 36.0 24.3 183 477-673 4-202 (244)
350 PF14853 Fis1_TPR_C: Fis1 C-te 91.6 1.1 2.3E-05 31.3 6.5 39 310-356 3-41 (53)
351 KOG0686 COP9 signalosome, subu 91.6 4 8.6E-05 41.4 12.8 105 309-418 151-255 (466)
352 PF10255 Paf67: RNA polymerase 91.4 2.1 4.5E-05 44.4 11.1 73 267-340 124-196 (404)
353 PF11207 DUF2989: Protein of u 91.3 5.9 0.00013 36.4 12.6 78 615-704 121-198 (203)
354 PF04190 DUF410: Protein of un 91.2 16 0.00035 35.9 23.3 205 481-699 17-243 (260)
355 smart00101 14_3_3 14-3-3 homol 90.9 16 0.00034 35.3 22.0 182 353-547 4-201 (244)
356 PF15015 NYD-SP12_N: Spermatog 90.9 4.9 0.00011 40.9 12.6 106 313-426 181-296 (569)
357 PF04097 Nic96: Nup93/Nic96; 90.7 33 0.00071 38.6 25.7 31 513-543 410-440 (613)
358 COG4649 Uncharacterized protei 90.7 12 0.00026 33.4 14.7 123 571-713 71-195 (221)
359 PF14561 TPR_20: Tetratricopep 90.7 4.6 9.9E-05 32.0 10.2 50 328-385 8-57 (90)
360 smart00028 TPR Tetratricopepti 90.7 0.34 7.4E-06 29.0 3.2 31 351-381 2-32 (34)
361 KOG1497 COP9 signalosome, subu 90.5 19 0.00041 35.5 18.7 111 348-459 101-211 (399)
362 KOG4014 Uncharacterized conser 90.3 11 0.00023 34.0 12.7 164 349-550 33-237 (248)
363 KOG2422 Uncharacterized conser 90.2 29 0.00062 37.3 17.8 175 278-461 251-448 (665)
364 PF15015 NYD-SP12_N: Spermatog 90.0 4.1 9E-05 41.4 11.3 101 564-672 182-292 (569)
365 PF04053 Coatomer_WDAD: Coatom 90.0 9.9 0.00021 40.5 15.0 128 317-499 270-398 (443)
366 KOG2561 Adaptor protein NUB1, 89.7 13 0.00029 38.1 14.6 116 222-340 164-299 (568)
367 TIGR02561 HrpB1_HrpK type III 89.6 5.2 0.00011 34.7 10.1 83 603-701 13-95 (153)
368 PF04053 Coatomer_WDAD: Coatom 89.4 6.6 0.00014 41.8 13.2 157 361-584 272-428 (443)
369 PRK13184 pknD serine/threonine 89.3 51 0.0011 38.7 30.6 108 271-386 481-588 (932)
370 cd02682 MIT_AAA_Arch MIT: doma 89.2 3.2 6.9E-05 31.4 7.6 51 220-271 5-55 (75)
371 PRK10941 hypothetical protein; 89.0 2.3 5E-05 41.7 8.8 66 643-717 182-247 (269)
372 KOG1310 WD40 repeat protein [G 88.8 2.6 5.5E-05 44.1 9.1 103 216-337 369-474 (758)
373 KOG3824 Huntingtin interacting 88.8 1.1 2.4E-05 43.3 6.1 70 606-691 122-191 (472)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 88.5 9.4 0.0002 32.6 11.2 87 488-585 40-126 (126)
375 PF07721 TPR_4: Tetratricopept 88.5 0.67 1.4E-05 26.8 2.9 24 267-290 3-26 (26)
376 PF07721 TPR_4: Tetratricopept 88.1 0.65 1.4E-05 26.8 2.7 24 643-666 2-25 (26)
377 KOG0686 COP9 signalosome, subu 88.1 34 0.00074 35.1 18.3 119 420-544 138-256 (466)
378 PF08626 TRAPPC9-Trs120: Trans 87.9 77 0.0017 39.0 24.9 155 392-549 242-477 (1185)
379 KOG3364 Membrane protein invol 87.8 7.5 0.00016 33.0 9.6 69 641-717 31-103 (149)
380 COG1747 Uncharacterized N-term 87.6 42 0.0009 35.6 21.7 200 435-671 69-288 (711)
381 KOG1497 COP9 signalosome, subu 87.5 31 0.00068 34.0 20.1 109 513-627 99-211 (399)
382 KOG0128 RNA-binding protein SA 87.4 56 0.0012 36.8 31.0 152 346-503 109-260 (881)
383 COG3629 DnrI DNA-binding trans 87.1 8.9 0.00019 37.6 11.4 71 307-385 152-222 (280)
384 PF09670 Cas_Cas02710: CRISPR- 87.1 39 0.00085 35.3 17.1 141 518-675 132-274 (379)
385 KOG4014 Uncharacterized conser 87.0 11 0.00024 33.8 10.7 150 414-593 50-239 (248)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 86.5 8.1 0.00018 33.0 9.7 87 279-377 40-126 (126)
387 KOG2908 26S proteasome regulat 86.5 37 0.00081 33.9 17.9 95 526-622 84-179 (380)
388 TIGR02561 HrpB1_HrpK type III 86.5 7 0.00015 34.0 9.1 86 431-533 9-94 (153)
389 PF05053 Menin: Menin; InterP 85.9 20 0.00043 38.4 13.7 77 429-508 274-352 (618)
390 PF09670 Cas_Cas02710: CRISPR- 85.7 50 0.0011 34.6 17.0 65 268-337 134-198 (379)
391 PF08626 TRAPPC9-Trs120: Trans 85.6 1E+02 0.0022 38.0 24.8 154 348-505 240-476 (1185)
392 KOG3824 Huntingtin interacting 85.6 2.2 4.8E-05 41.3 6.2 62 647-717 121-182 (472)
393 KOG1310 WD40 repeat protein [G 85.3 5.3 0.00012 41.9 9.2 86 615-717 389-477 (758)
394 KOG2422 Uncharacterized conser 85.1 60 0.0013 35.0 17.3 173 532-717 253-451 (665)
395 cd02683 MIT_1 MIT: domain cont 85.1 6.8 0.00015 30.0 7.6 51 220-271 5-55 (77)
396 KOG2908 26S proteasome regulat 84.4 47 0.001 33.2 18.8 96 400-496 83-179 (380)
397 PF10952 DUF2753: Protein of u 84.4 23 0.00049 29.6 10.9 74 603-676 4-84 (140)
398 TIGR03504 FimV_Cterm FimV C-te 84.2 2.7 5.8E-05 28.0 4.4 25 646-670 3-27 (44)
399 PF10952 DUF2753: Protein of u 84.0 24 0.00051 29.5 10.9 74 436-509 5-85 (140)
400 KOG2561 Adaptor protein NUB1, 84.0 15 0.00033 37.7 11.4 149 475-625 164-340 (568)
401 PF04212 MIT: MIT (microtubule 83.0 7.8 0.00017 28.9 7.2 49 221-270 5-53 (69)
402 COG4976 Predicted methyltransf 82.7 1.6 3.5E-05 40.5 3.9 56 609-672 4-59 (287)
403 KOG2114 Vacuolar assembly/sort 82.7 92 0.002 35.3 28.3 49 245-295 350-398 (933)
404 cd02678 MIT_VPS4 MIT: domain c 82.2 10 0.00022 28.8 7.6 51 220-271 5-55 (75)
405 KOG3807 Predicted membrane pro 81.2 61 0.0013 32.2 18.3 52 486-548 196-247 (556)
406 PF04097 Nic96: Nup93/Nic96; 81.1 1E+02 0.0022 34.7 19.8 19 272-290 265-283 (613)
407 PRK09169 hypothetical protein; 81.1 1.8E+02 0.0038 37.5 21.9 472 243-717 263-743 (2316)
408 smart00745 MIT Microtubule Int 80.9 14 0.00031 28.1 8.2 49 220-269 7-55 (77)
409 KOG0889 Histone acetyltransfer 80.4 2.2E+02 0.0049 38.3 35.5 140 473-629 2735-2883(3550)
410 PF10255 Paf67: RNA polymerase 80.3 7.9 0.00017 40.2 8.3 72 310-381 124-195 (404)
411 KOG0276 Vesicle coat complex C 80.2 29 0.00063 37.4 12.2 50 274-337 646-695 (794)
412 KOG4521 Nuclear pore complex, 80.0 1.3E+02 0.0029 35.5 21.8 200 474-717 920-1135(1480)
413 KOG3364 Membrane protein invol 79.6 26 0.00056 30.0 9.5 65 393-461 33-100 (149)
414 COG3014 Uncharacterized protei 79.2 73 0.0016 31.9 14.6 49 329-382 42-90 (449)
415 cd02656 MIT MIT: domain contai 79.1 18 0.00039 27.4 8.1 54 221-275 6-59 (75)
416 KOG4563 Cell cycle-regulated h 79.1 7.2 0.00016 39.0 7.2 67 307-373 40-106 (400)
417 COG2912 Uncharacterized conser 79.0 13 0.00029 35.9 8.8 82 599-693 180-261 (269)
418 cd02684 MIT_2 MIT: domain cont 78.9 17 0.00038 27.6 7.8 52 220-272 5-56 (75)
419 KOG0508 Ankyrin repeat protein 78.8 1.5 3.3E-05 44.9 2.6 73 624-696 319-391 (615)
420 KOG4563 Cell cycle-regulated h 78.7 5.6 0.00012 39.8 6.3 62 643-704 42-103 (400)
421 COG3914 Spy Predicted O-linked 78.1 37 0.0008 36.6 12.4 95 606-717 73-174 (620)
422 KOG3807 Predicted membrane pro 77.6 79 0.0017 31.5 17.5 111 441-586 193-303 (556)
423 KOG2114 Vacuolar assembly/sort 77.3 1.4E+02 0.003 34.0 26.3 53 199-252 346-398 (933)
424 COG3947 Response regulator con 77.3 43 0.00094 32.8 11.4 74 560-641 281-354 (361)
425 TIGR03504 FimV_Cterm FimV C-te 76.8 11 0.00023 25.2 5.3 25 478-502 3-27 (44)
426 PF12854 PPR_1: PPR repeat 76.4 5.5 0.00012 24.7 3.7 26 642-667 7-32 (34)
427 cd02677 MIT_SNX15 MIT: domain 76.3 31 0.00068 26.2 8.7 50 220-270 5-54 (75)
428 PF05053 Menin: Menin; InterP 76.3 75 0.0016 34.3 13.8 72 558-632 277-350 (618)
429 KOG1920 IkappaB kinase complex 75.0 1.9E+02 0.0041 34.5 23.3 131 400-544 888-1026(1265)
430 PRK15180 Vi polysaccharide bio 74.0 14 0.0003 38.4 7.8 123 570-717 301-423 (831)
431 COG3914 Spy Predicted O-linked 72.9 1.3E+02 0.0028 32.7 14.7 128 510-657 61-191 (620)
432 cd02681 MIT_calpain7_1 MIT: do 72.6 40 0.00087 25.7 8.2 32 644-675 8-39 (76)
433 PF12854 PPR_1: PPR repeat 72.6 7.9 0.00017 24.0 3.8 27 265-291 7-33 (34)
434 PF04212 MIT: MIT (microtubule 72.4 32 0.0007 25.5 7.8 43 645-687 8-51 (69)
435 PHA02537 M terminase endonucle 71.7 31 0.00067 32.8 9.1 103 525-629 91-207 (230)
436 cd02682 MIT_AAA_Arch MIT: doma 71.5 22 0.00047 27.0 6.5 35 474-508 6-40 (75)
437 KOG4521 Nuclear pore complex, 71.4 2E+02 0.0043 34.2 16.4 184 265-461 920-1132(1480)
438 KOG2063 Vacuolar assembly/sort 71.3 66 0.0014 37.2 13.1 182 476-670 506-712 (877)
439 KOG1920 IkappaB kinase complex 71.1 2.3E+02 0.005 33.8 27.6 25 604-628 1003-1027(1265)
440 COG3014 Uncharacterized protei 70.6 1.2E+02 0.0027 30.4 16.9 29 520-548 61-89 (449)
441 KOG0889 Histone acetyltransfer 68.6 4.3E+02 0.0093 35.9 31.8 104 557-673 2735-2843(3550)
442 cd02681 MIT_calpain7_1 MIT: do 68.0 52 0.0011 25.1 8.0 32 601-632 7-38 (76)
443 PF07720 TPR_3: Tetratricopept 67.8 18 0.0004 22.8 4.6 31 685-716 2-34 (36)
444 KOG0276 Vesicle coat complex C 67.5 21 0.00045 38.5 7.6 79 520-629 617-695 (794)
445 PF07720 TPR_3: Tetratricopept 67.2 16 0.00035 23.1 4.3 29 351-379 2-32 (36)
446 KOG4422 Uncharacterized conser 67.1 1.7E+02 0.0036 30.6 30.6 69 558-629 522-590 (625)
447 PF10373 EST1_DNA_bind: Est1 D 66.0 13 0.00028 37.0 5.9 62 619-696 1-62 (278)
448 PF13041 PPR_2: PPR repeat fam 65.8 23 0.0005 24.1 5.4 29 643-671 4-32 (50)
449 KOG0530 Protein farnesyltransf 65.3 1.4E+02 0.003 29.0 16.4 170 278-486 56-233 (318)
450 PF10938 YfdX: YfdX protein; 64.9 71 0.0015 28.4 9.6 112 223-336 4-145 (155)
451 PF10373 EST1_DNA_bind: Est1 D 64.7 92 0.002 30.8 11.8 62 536-612 1-62 (278)
452 smart00777 Mad3_BUB1_I Mad3/BU 64.6 44 0.00095 28.4 7.7 80 493-583 45-124 (125)
453 COG1747 Uncharacterized N-term 64.4 2.1E+02 0.0045 30.7 21.9 167 311-504 69-235 (711)
454 cd02679 MIT_spastin MIT: domai 63.9 41 0.00089 25.8 6.7 56 604-670 12-67 (79)
455 cd02683 MIT_1 MIT: domain cont 63.8 64 0.0014 24.7 7.9 42 645-686 9-51 (77)
456 PHA02537 M terminase endonucle 63.4 58 0.0013 31.0 9.2 109 275-385 93-213 (230)
457 KOG0546 HSP90 co-chaperone CPR 63.2 13 0.00028 37.3 4.9 122 563-700 227-359 (372)
458 PF01535 PPR: PPR repeat; Int 63.1 12 0.00025 22.1 3.2 27 644-670 2-28 (31)
459 PF13041 PPR_2: PPR repeat fam 63.1 28 0.00061 23.6 5.5 29 433-461 4-32 (50)
460 PF01535 PPR: PPR repeat; Int 62.2 13 0.00029 21.8 3.3 27 602-628 2-28 (31)
461 KOG0260 RNA polymerase II, lar 62.0 89 0.0019 36.8 11.5 125 20-183 1474-1604(1605)
462 PRK15180 Vi polysaccharide bio 61.1 1.1E+02 0.0023 32.3 11.0 120 320-461 301-420 (831)
463 TIGR02710 CRISPR-associated pr 59.3 2.3E+02 0.0049 29.5 14.2 110 563-675 135-279 (380)
464 PF10858 DUF2659: Protein of u 58.2 1.4E+02 0.0029 26.6 18.0 131 572-715 71-201 (220)
465 cd02680 MIT_calpain7_2 MIT: do 57.9 65 0.0014 24.5 6.8 34 220-254 5-38 (75)
466 TIGR00756 PPR pentatricopeptid 57.5 21 0.00046 21.4 3.8 27 644-670 2-28 (35)
467 TIGR00756 PPR pentatricopeptid 57.3 23 0.00049 21.3 3.9 27 602-628 2-28 (35)
468 smart00777 Mad3_BUB1_I Mad3/BU 55.8 78 0.0017 26.9 7.8 82 239-333 43-124 (125)
469 KOG2758 Translation initiation 55.8 2.3E+02 0.0049 28.4 15.5 186 213-421 121-317 (432)
470 KOG0508 Ankyrin repeat protein 55.3 28 0.00061 36.2 5.9 135 264-403 244-390 (615)
471 smart00745 MIT Microtubule Int 55.1 91 0.002 23.6 8.2 31 647-677 13-43 (77)
472 KOG0546 HSP90 co-chaperone CPR 55.0 20 0.00044 35.9 4.7 99 397-503 227-338 (372)
473 cd02679 MIT_spastin MIT: domai 54.7 73 0.0016 24.5 6.7 35 518-552 9-43 (79)
474 cd02678 MIT_VPS4 MIT: domain c 53.7 95 0.0021 23.5 8.1 42 646-687 10-52 (75)
475 PF12309 KBP_C: KIF-1 binding 53.2 2.9E+02 0.0062 28.8 16.3 60 491-550 266-342 (371)
476 KOG4279 Serine/threonine prote 52.8 72 0.0016 35.5 8.6 182 516-717 200-398 (1226)
477 KOG4279 Serine/threonine prote 52.6 1.1E+02 0.0023 34.3 9.8 180 431-629 200-395 (1226)
478 PF07163 Pex26: Pex26 protein; 51.6 2.5E+02 0.0054 27.6 13.7 139 310-456 37-182 (309)
479 PF13812 PPR_3: Pentatricopept 51.5 38 0.00083 20.3 4.2 27 602-628 3-29 (34)
480 PF13812 PPR_3: Pentatricopept 50.7 39 0.00084 20.3 4.1 27 644-670 3-29 (34)
481 PRK12798 chemotaxis protein; R 50.2 3.3E+02 0.0071 28.6 23.0 31 432-462 257-287 (421)
482 KOG2582 COP9 signalosome, subu 50.0 91 0.002 31.6 8.2 110 517-629 102-212 (422)
483 COG2912 Uncharacterized conser 49.4 1.2E+02 0.0026 29.7 8.8 68 430-505 179-246 (269)
484 COG4455 ImpE Protein of avirul 49.4 88 0.0019 29.4 7.5 55 608-670 9-63 (273)
485 KOG2063 Vacuolar assembly/sort 47.6 4.2E+02 0.0091 31.1 14.1 182 311-502 507-712 (877)
486 KOG3024 Uncharacterized conser 47.3 2.9E+02 0.0063 27.2 12.9 134 569-708 17-150 (312)
487 PF10938 YfdX: YfdX protein; 47.1 99 0.0021 27.5 7.5 109 603-713 5-145 (155)
488 TIGR02710 CRISPR-associated pr 46.9 3.6E+02 0.0077 28.1 14.5 58 271-332 136-195 (380)
489 KOG2758 Translation initiation 45.8 3.3E+02 0.0071 27.4 17.5 178 470-672 125-318 (432)
490 cd02656 MIT MIT: domain contai 45.8 1.3E+02 0.0028 22.7 8.2 31 647-677 11-41 (75)
491 smart00386 HAT HAT (Half-A-TPR 45.6 48 0.001 19.4 4.0 30 614-651 1-30 (33)
492 PF07163 Pex26: Pex26 protein; 45.1 3.1E+02 0.0068 27.0 15.2 141 475-624 36-182 (309)
493 COG4455 ImpE Protein of avirul 44.9 2.1E+02 0.0045 27.0 9.1 62 315-384 8-69 (273)
494 COG3899 Predicted ATPase [Gene 40.9 6.8E+02 0.015 29.6 37.0 260 220-503 438-706 (849)
495 cd02684 MIT_2 MIT: domain cont 40.2 1.6E+02 0.0036 22.3 8.3 41 648-688 12-53 (75)
496 KOG4318 Bicoid mRNA stability 40.0 6.7E+02 0.014 29.3 25.4 66 647-716 983-1049(1088)
497 KOG0530 Protein farnesyltransf 39.5 3.7E+02 0.0081 26.2 19.7 117 365-503 58-176 (318)
498 PF09205 DUF1955: Domain of un 39.4 1.7E+02 0.0037 25.2 7.1 52 611-670 97-148 (161)
499 COG5091 SGT1 Suppressor of G2 38.6 86 0.0019 30.2 5.9 60 404-463 51-110 (368)
500 KOG1938 Protein with predicted 38.3 2.8E+02 0.006 32.3 10.7 98 529-629 287-384 (960)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-45 Score=363.38 Aligned_cols=415 Identities=20% Similarity=0.285 Sum_probs=255.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004812 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
....+|.....++.++..+++-.+ +++....-..|++.. |..+.+|.++|.++...|++++|+.+|+.++
T Consensus 74 v~~~d~t~~~~llll~ai~~q~~r-~d~s~a~~~~a~r~~---------~q~ae~ysn~aN~~kerg~~~~al~~y~~ai 143 (966)
T KOG4626|consen 74 VGQEDPTNTERLLLLSAIFFQGSR-LDKSSAGSLLAIRKN---------PQGAEAYSNLANILKERGQLQDALALYRAAI 143 (966)
T ss_pred hhccCCCcccceeeehhhhhcccc-hhhhhhhhhhhhhcc---------chHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 334444444444444444444433 444444444444332 4446666666666666666666666666666
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004812 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (729)
++. +..+.+|.++|.++...|+.+.|..+|..++++ +|...-+...+|.++...|+..+|..+
T Consensus 144 el~---------p~fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 144 ELK---------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hcC---------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhHHHHhhcccchhHHH
Confidence 654 123445666666666666666666666666666 566666666666666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
|.+|++..+.. +.+|.+||.++...|+...|+.+|++|+. .+|....+|++||.+|...+.|+.|+
T Consensus 207 YlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvk------ldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 207 YLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK------LDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhc------CCCcchHHHhhHHHHHHHHhcchHHH
Confidence 66666655432 34466666666666666666666666654 25555666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
..|.+|+.+ .|..+.++.++|.+|..+|..+-|+..|++++++ .|....++++||..+...|+
T Consensus 273 s~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 273 SCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------QPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc---------CCCchHHHhHHHHHHHhccc
Confidence 666666665 5666666666666666666666666666666666 44445566666666666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 004812 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (729)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 612 (729)
..+|..+|.+++.+.+.. +.+.++||.+|..+|.+++|..+|.++++.. +..+.+.++||.+|.+
T Consensus 336 V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQ 400 (966)
T ss_pred hHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHh
Confidence 666666666666665554 4556666666666666666666666666653 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004812 613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (729)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 692 (729)
+|++++|+.+|++++.+ .|..++++.++|..|..+|+...|+..|.+|+.+ +|..++++.+||.
T Consensus 401 qgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLas 464 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLAS 464 (966)
T ss_pred cccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHH
Confidence 66666666666666666 6666666666666666666666666666666655 5666666666666
Q ss_pred HHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 693 LLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 693 ~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|...|+..+|+ ..|+++|++.|+
T Consensus 465 i~kDsGni~~AI-~sY~~aLklkPD 488 (966)
T KOG4626|consen 465 IYKDSGNIPEAI-QSYRTALKLKPD 488 (966)
T ss_pred HhhccCCcHHHH-HHHHHHHccCCC
Confidence 666666666666 666666666666
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-43 Score=352.23 Aligned_cols=420 Identities=20% Similarity=0.254 Sum_probs=382.5
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
.........+|..+..+-.+|++|..+|+ +++|+.+|+.++++- |+.+.+|.++|.++...|+.+.|...
T Consensus 103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 103 AGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 34455667889999999999999999998 999999999999863 67799999999999999999999999
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004812 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (729)
|..++++. + ...-+...+|.++-.+|+..+|..+|.+|++. .|..+.+|.+||.++..+|+..
T Consensus 173 ~~~alqln-----P----~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~ 235 (966)
T KOG4626|consen 173 FFEALQLN-----P----DLYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIW 235 (966)
T ss_pred HHHHHhcC-----c----chhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHH
Confidence 99999997 2 23345778999999999999999999999999 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004812 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (729)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (729)
.|+.+|++|+.+.|... .+|.+||.+|...+.|++|+..|.+|+. ..|..+.++.++|.+|+.+|.
T Consensus 236 ~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred HHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEEEecccc
Confidence 99999999999988765 4699999999999999999999999975 478888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004812 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (729)
.+-|+..|++++++ .|....++.+||..+-..|+..+|..+|.+++.+ .+..+.++++||.+|
T Consensus 302 ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 302 LDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIY 364 (966)
T ss_pred HHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999999999999 444578899999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004812 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (729)
..+|.+++|..+|.+++++.+.. +.+..+||.+|..+|++++|+.+|++++.+ .+..+.++.++|
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmG 429 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMG 429 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcc
Confidence 99999999999999999998876 678899999999999999999999999997 355899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004812 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 687 (729)
..|..+|+...|+.+|.+|+.+ +|..++++.+||.+|...|+..+|+..|+.++.+ .|+..+++
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~ 493 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAY 493 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhh
Confidence 9999999999999999999999 9999999999999999999999999999999988 58888999
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+|+.++.-..++.+-- +.+.++.++-.+
T Consensus 494 cNllh~lq~vcdw~D~d-~~~~kl~sivrd 522 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTDYD-KRMKKLVSIVRD 522 (966)
T ss_pred hHHHHHHHHHhcccchH-HHHHHHHHHHHH
Confidence 99998887777766655 555555554433
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.7e-31 Score=297.88 Aligned_cols=421 Identities=17% Similarity=0.152 Sum_probs=317.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.+..+..+|..++..|+ |++|+.+|++|+.+. |+ ...+.++|.||..+|++++|+..+++++++.
T Consensus 126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---- 190 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD---- 190 (615)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence 45678899999999997 999999999999863 22 3468899999999999999999999999985
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004812 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
++. ..+++.+|.+|..+|++++|+..|..++..- .......... +...+. ..+...+..+++.
T Consensus 191 -p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~-----~~a~~~~~~~l~~ 253 (615)
T TIGR00990 191 -PDY----SKALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLLK-----KFAESKAKEILET 253 (615)
T ss_pred -CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHHH-----HHHHHHHHHHHhc
Confidence 333 3459999999999999999999997765441 0011110000 000000 1111111111111
Q ss_pred HHhcCCC-------------------------CCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004812 380 HKDNGSP-------------------------ASLEEAADRRLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 380 ~~~~~~~-------------------------~~~~~a~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
.+..... ........+..++..+ ...++|++|+..|++++... ...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~ 330 (615)
T TIGR00990 254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE 330 (615)
T ss_pred CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence 1110000 0000011233333332 23478999999999887532 235677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
+.++..+|.++..+|++++|+..|++++.+ .|....++..+|.++...|++++|+.+|++++++
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 394 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-------- 394 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 889999999999999999999999999998 7888899999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
.|....++..+|.++...|++++|+.+|++++.+.+.. ...+..+|.++..+|++++|+..|++++...
T Consensus 395 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 463 (615)
T TIGR00990 395 -NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF--- 463 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 33346789999999999999999999999999987654 4678899999999999999999999999763
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+....++..+|.++...|++++|+..|++++.+...... ........+...+.++...|++++|+.++++++.+
T Consensus 464 -----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 -----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred -----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 123568899999999999999999999999998322100 01111222222333445579999999999999976
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 672 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...++..||.++...|++++|+ ..|++++++.+.
T Consensus 538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART 574 (615)
T ss_pred --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence 5777788999999999999999999 999999998874
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-30 Score=268.46 Aligned_cols=421 Identities=40% Similarity=0.524 Sum_probs=360.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004812 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
.+.....++..++.....+..+.+.+....++++..++.... .....++.....++..+.+++|....++...+..
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 455667778888888888877888888888888877665211 1112356667777788888888888877765431
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004812 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
...++..+...-+.+.....+...+.+..+..+..+|....+...++..|..+|+|+.|+..|+.+
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111333333333444667777777777777788889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
+++..+..+. .++.+...+..+|.+|..++++.+|+..|+
T Consensus 226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9885443321 244555556679999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH
Q 004812 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (729)
+|+.+.+...|+++|..+.++.+||.+|...|+|++|..++++|++++++ ..+..++.+...+.+++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 99999999999999999999999999999999999999999999999998 45788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004812 537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (729)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (729)
..+++++++++.+.++... .++.++.+||.+|..+|+|++|.++|++|+.+.+...+.........+.++|..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 9999999999998888887 899999999999999999999999999999999999888778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 695 (729)
+.+|..+|.++..+. ...|+++|+....|.+||.+|..+|++++|+++.++++...++.+|..+|........++....
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 999999999999999 8899999999999999999999999999999999999999999999999998887777776654
Q ss_pred Hh
Q 004812 696 EA 697 (729)
Q Consensus 696 ~~ 697 (729)
..
T Consensus 504 ~~ 505 (508)
T KOG1840|consen 504 EA 505 (508)
T ss_pred Hh
Confidence 43
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-31 Score=311.46 Aligned_cols=424 Identities=17% Similarity=0.169 Sum_probs=286.7
Q ss_pred cccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh
Q 004812 202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281 (729)
Q Consensus 202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 281 (729)
++..+...+.......|.....+..+|..+...|+ +++|+.+|+++++.. |....++..+|.++...|++
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCH
Confidence 33333333344444555566666666666666665 666666666666542 22344566666666677777
Q ss_pred HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004812 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (729)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (729)
++|+..|++++... +.+ ..++..++.++...|++++|+.++++++.. +|.....+..++.++.
T Consensus 516 ~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 516 DDAIQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHH
Confidence 77777776666553 222 223566666666677777777777666655 4555556666677777
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004812 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
..|++++|+.++++++...+.. ...+..+|.++...|++++|+..|++++.. .+....++..+|.+
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADA 644 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHH
Confidence 7777777777776666544322 245667777777777777777777766543 23334556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
+...|++++|+.+|++++.. .|....++..++.++...|++++|+.+++.+.... +.....+.
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~ 707 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFE 707 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHH
Confidence 77777777777777777765 45556666777777777777777777776665551 22344566
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.+|.++...|++++|+..|++++...+.. ..+..++.++...|++++|+..+++++... +....
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~ 771 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAV 771 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH
Confidence 77888888888888888888887764332 345667788888888888888887777641 11246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
++..+|.+|...|++++|+.+|+++++. +|....++..++.++...|+ .+|+.++++++.+ .|
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~ 834 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------AP 834 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CC
Confidence 7788888888888888888888888877 67777788888888888888 7788888888875 35
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+....+..+|.++...|++++|. ..|+++++.+|.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 55566778888888888888888 888888888885
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-30 Score=305.24 Aligned_cols=442 Identities=20% Similarity=0.164 Sum_probs=247.0
Q ss_pred cccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004812 196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
.+...+++..++..+.......|.....+..+|..+...|+ +++|+.+|++++... |....++..+|.++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD-FEKAAEYLAKATELD---------PENAAARTQLGISK 407 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------CCCHHHHHHHHHHH
Confidence 34445555555545555555556666666666666666665 666666666665431 22234455556666
Q ss_pred HHcCChHHHHHHHHHhcccchhhc-----------------------------cccchHHHHHHHHHHHHHHHHcCCHHH
Q 004812 276 CSLGQYNEAIPVLEQSIEIPVIEE-----------------------------GQEHALAKFAGHMQLGDTYAMLGQLEN 326 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~ 326 (729)
...|++++|+..|++++....... .+. ....+..+|.++...|++++
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD----NASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CcHHHHHHHHHHHhCCCHHH
Confidence 666666666666655554431000 001 11235556666666666666
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhC
Q 004812 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG 406 (729)
Q Consensus 327 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g 406 (729)
|+.+|++++.. +|....++..++.++...|++++|+..|++++...+.. ..++..++.++...|
T Consensus 484 A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 484 AREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--------LRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHcC
Confidence 66666666655 45555566666666666666666666666666544322 233555555555555
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
++++|+..+.+++.. .+.....+..++.++...|++++|+..+++++.. .|....++..+|.++..
T Consensus 548 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 548 NEEEAVAWLEKAAEL------NPQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLA 613 (899)
T ss_pred CHHHHHHHHHHHHHh------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 555555555555432 1222233444555555555555555555554443 33334445555555555
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC---------------
Q 004812 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------- 551 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------- 551 (729)
.|++++|+..|+++++.. +....++..++.++...|++++|+.+|++++...+...
T Consensus 614 ~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred cCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 555555555555555441 11223444455555555555555555555444332210
Q ss_pred ------------CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 004812 552 ------------GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619 (729)
Q Consensus 552 ------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 619 (729)
...+.....+..+|.++...|++++|+..|++++.... . ...+..++.++...|++++|
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-----S----SQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----C----chHHHHHHHHHHHCCCHHHH
Confidence 00001123445566666666666666666666665411 1 13455666777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+..++++++. +|....++..+|.+|...|++++|+.+|+++++. +|....++..++.++...|+
T Consensus 756 ~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 756 VKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc
Confidence 7777776665 5666667777777777777777777777777765 45666677777777777777
Q ss_pred HhHHHHHHHHHHHhhccc
Q 004812 700 VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 700 ~~~A~~~~l~~al~~~p~ 717 (729)
.+|+ ..+++++.+.|+
T Consensus 820 -~~A~-~~~~~~~~~~~~ 835 (899)
T TIGR02917 820 -PRAL-EYAEKALKLAPN 835 (899)
T ss_pred -HHHH-HHHHHHHhhCCC
Confidence 6677 777777777766
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.4e-30 Score=288.58 Aligned_cols=414 Identities=18% Similarity=0.131 Sum_probs=313.9
Q ss_pred cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004812 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
..+..+...++|..|+..+..+....|+ ...+..+|.++...|+ +++|+..+.+|+++. |+...++..+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~~~ 200 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALNRR 200 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHHHH
Confidence 4455567778889999888888888886 6789999999999997 999999999999863 4567889999
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------
Q 004812 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK------------ 339 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------ 339 (729)
|.+|..+|++++|+..|..++.+.. ...... ...+. ..+. ..+...+..++....
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~----~~~~~~-~~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDG----FRNEQS-AQAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CccHHH-HHHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 9999999999999999987765531 111100 00000 0000 011111111111000
Q ss_pred -HH------------hCCCCchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004812 340 -QV------------LGETDPRVGETCRYLAEAHV---QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (729)
Q Consensus 340 -~~------------~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~ 403 (729)
.. ....++.....+..++..+. ..++|++|+..|++++.... ..+..+.++..+|.++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKC 342 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHH
Confidence 00 00002223333444443332 34689999999999997651 12344677999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (729)
.+|++++|+..|++++.+ .|.....+..+|.++...|++++|+.+|++++++ +|....++..+|.+
T Consensus 343 ~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 343 LKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQL 408 (615)
T ss_pred HcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999999999999864 5666778999999999999999999999999998 67788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 004812 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (729)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (729)
+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++++...+.. ..++..
T Consensus 409 ~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~ 472 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNY 472 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHH
Confidence 99999999999999999998 34456778999999999999999999999999887655 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
+|.++...|++++|+..|++++.+.+...... ......+...+.++...|++++|+.+|++++.+ +|+...
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~ 543 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDI 543 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHH
Confidence 99999999999999999999998754322211 111122233333444579999999999999998 788888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
++..+|.++..+|++++|+.+|++++++.+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998853
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-29 Score=299.80 Aligned_cols=455 Identities=15% Similarity=0.063 Sum_probs=344.8
Q ss_pred CcccccccccccccCcccccCCCCCCChHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004812 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLK-QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~-~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
.+..+...+++.+|++.+......+|.....-.. ........|+ +++|+..++++++.. |....++..+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~L 187 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNTL 187 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHHH
Confidence 3445667788888887777777777765432221 2222233476 999999999988764 4446678889
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhc-------------c----------------ccch-HHHH-H-----------
Q 004812 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEE-------------G----------------QEHA-LAKF-A----------- 309 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~----------------~~~~-~~~~-~----------- 309 (729)
|.+++..|++++|+..+++++....... . +... .... .
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999865421000 0 0000 0000 0
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004812 310 ---GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 310 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
....+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+.+|+++++..+.....
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 0123488899999999999999999998 68889999999999999999999999999999987765422
Q ss_pred CCHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 387 ASLE------EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 387 ~~~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
.... .......+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+.+|+++++
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1100 1122345688899999999999999999875 344557888999999999999999999999997
Q ss_pred HHHHhcCCCChhHHH------------------------------------------HHHHHHHHHHHcCCHHHHHHHHH
Q 004812 461 AFKTNKGENHPAVAS------------------------------------------VFVRLADMYNRTGKLRESKSYCE 498 (729)
Q Consensus 461 ~~~~~~~~~~~~~~~------------------------------------------~~~~la~~~~~~g~~~~A~~~~~ 498 (729)
+ .|.... .+..+|.++...|++++|+..|+
T Consensus 414 ~--------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 414 M--------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred h--------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 222222 23345667778899999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004812 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (729)
Q Consensus 499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (729)
+++++ .|....+++.+|.+|...|++++|+..+++++...+.. ...++.++..+...+++++|+
T Consensus 486 ~Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 486 QRLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHH
Confidence 99998 33445678999999999999999999999998765543 244555666666677777776
Q ss_pred HHHHHHH-------------------------------------HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 579 DSFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE 621 (729)
Q Consensus 579 ~~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (729)
.+++++. .+++. .+ .....+..+|.++...|++++|+.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p----~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QP----PSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CC----CCchHHHHHHHHHHHcCCHHHHHH
Confidence 6655421 11111 11 123467889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004812 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
+|+++++. +|+...++..++.+|...|++++|+..|++++.. .|+...++..+|.++...|+++
T Consensus 625 ~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 625 AYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHH
Confidence 99999998 8888899999999999999999999999988754 5677788899999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 004812 702 SRKAQSLETLLDANSR 717 (729)
Q Consensus 702 ~A~~~~l~~al~~~p~ 717 (729)
+|. ..|++++...|+
T Consensus 689 eA~-~~~~~al~~~~~ 703 (1157)
T PRK11447 689 AAQ-RTFNRLIPQAKS 703 (1157)
T ss_pred HHH-HHHHHHhhhCcc
Confidence 999 999999988765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.1e-29 Score=295.67 Aligned_cols=448 Identities=14% Similarity=0.113 Sum_probs=342.8
Q ss_pred cccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcCC----------
Q 004812 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGANG---------- 258 (729)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~~---------- 258 (729)
.+++.++++.+..+...+|+...+++.+|..++..|+ +++|+..+++++... +.+...
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 4666778888888899999999999999999999997 999999999875421 110000
Q ss_pred ------CCC-HhHHH-----------------HHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHH
Q 004812 259 ------KPS-LELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL 314 (729)
Q Consensus 259 ------~~~-~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 314 (729)
.+. +.... ....+|.++...|++++|+..|+++++.. ++++ .++..+
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~L 309 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGAL 309 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHH
Confidence 000 10000 11234888999999999999999999885 4433 358999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004812 315 GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 315 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
|.+|..+|++++|+.+|+++++..+. .+. .......+|.++...|++++|+.+|++++.+.+..
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999987321 111 11223456888999999999999999999987644
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC------------hh---------------------
Q 004812 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD------------AE--------------------- 430 (729)
Q Consensus 384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~--------------------- 430 (729)
..++..+|.++...|++++|+.+|++++.+....... +.
T Consensus 385 --------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 385 --------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3568899999999999999999999997542211000 00
Q ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 431 ---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 431 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
....+..+|.++...|++++|+..|++++++ .|....+++.+|.+|...|++++|+..|++++...
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--- 525 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--- 525 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 0122345677788899999999999999998 78888999999999999999999999999998862
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------------------HHHHhC
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYNDA 550 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~~ 550 (729)
|.....++.++..+...+++++|+..++++. .+....
T Consensus 526 ------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 526 ------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred ------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 2223445555666666666666666554321 111111
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
+. ...++..+|.++...|++++|+.+|+++++.. +....++..++.++...|++++|+.+|++++..
T Consensus 600 p~----~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 600 PP----STRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred CC----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 11 13456789999999999999999999999862 224578999999999999999999999998877
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh---hHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004812 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP---DVDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
.|+...++..+|.++..+|++++|+.+|++++... +.+| ..+.++..+|.++...|++++|+ ..
T Consensus 667 -------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~ 733 (1157)
T PRK11447 667 -------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ET 733 (1157)
T ss_pred -------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 67777889999999999999999999999998753 2222 24566778899999999999999 99
Q ss_pred HHHHHh
Q 004812 708 LETLLD 713 (729)
Q Consensus 708 l~~al~ 713 (729)
|++++.
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 999985
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=6.5e-29 Score=261.39 Aligned_cols=460 Identities=17% Similarity=0.160 Sum_probs=366.6
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
..+..+-..+|.++.++..+++.+|..|+ |..+..++..|+... ...+..+..++.+|.+|..+|+|++|..+
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44555667788888999999999999997 999999999988764 23356788899999999999999999999
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---
Q 004812 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--- 364 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 364 (729)
|.+++... +++ .+-.++.+|.+|...|+++.|+.+|++++.. .|...++...||.+|...+
T Consensus 330 Y~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 330 YMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhh
Confidence 99999876 222 1223889999999999999999999999988 6888999999999998876
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004812 365 -QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 365 -~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
..+.|..++.++++..+.. ..+|..++.++....-+.. +.+|..|+.++...... .-...++++|..++
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHF 463 (1018)
T ss_pred HHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHH
Confidence 5678888888888776444 4568899988876655555 99999999777666554 44678899999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 444 SLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
..|++.+|..+|..|+..+......+. .......+++|.++...++++.|.+.|...+.. +|....++.
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~yl 534 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDAYL 534 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHHHH
Confidence 999999999999999998654332222 233556899999999999999999999999988 777889999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-----------------------------cHHHHHHHHHHHHHHc-
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----------------------------TVAGIEAQMGVMYYML- 571 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~~- 571 (729)
.+|......+...+|..++..++.+....+.... .-+.++..||.+|+..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 9998888889999999999888876544322111 0123344566665542
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 572 ----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 572 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
.+.+.+..++.+|++++.+....+|. ...+-+.+|.++...|++.+|+..|.++.+. ..+...+|.+
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--------~~~~~dv~lN 685 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREA--------TSDFEDVWLN 685 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHH--------HhhCCceeee
Confidence 23455666777777776655444433 5678899999999999999999999999887 3345568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccc
Q 004812 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIEL 725 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~ 725 (729)
||.||..+|+|..|++.|+.++..+- ..+...++..||+++...|.+.+|. .++..++.+.|. ...++++.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999999999998752 2345678899999999999999999 999999999998 55555543
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-28 Score=239.16 Aligned_cols=397 Identities=17% Similarity=0.158 Sum_probs=310.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+..+-..|+.+++.+. |++||.||.+|+.+. |+.+..|.+++.||...|+|++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 567788899999999997 999999999999985 2235569999999999999999999999999997
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHH-----HHHHhCC-CCchHH----
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY------------------TTGLEV-----QKQVLGE-TDPRVG---- 350 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~~~-~~~~~~---- 350 (729)
+ ....++++.+.++..+|++.+|+... ++.|.. ....++. ..|..+
T Consensus 180 --P----~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 180 --P----DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred --c----HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 3 34557999999999999999987433 222221 1222221 111111
Q ss_pred -HHHH--------------------HHHHH--HHHhc---CHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHH
Q 004812 351 -ETCR--------------------YLAEA--HVQAL---QFSEAQKFCQMALDIHKDNGSP-----ASLEEAADRRLMG 399 (729)
Q Consensus 351 -~~~~--------------------~la~~--~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~lg 399 (729)
..++ .+... +...+ .|.+|...+.+........... .....+.++...|
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 1111 01111 11112 4666666666655444332221 1223477889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
..++..|++-.|.+.|..++.+ ++.....|..+|.+|....+..+-...|.+|..+ +|..+.+|+.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH 399 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH 399 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence 9999999999999999999864 3334445899999999999999999999999999 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
.|++++-++++++|+..|++++.+ .|..+..+..++.+.++++++++++..|+.+...+|.. ..
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E 463 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence 999999999999999999999999 77788999999999999999999999999999999887 47
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
++...|.++..+++|++|++.|..|+++.+....... .+..+...|.+.. ..+++..|+.++++|+++ +
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D 533 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D 533 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence 8889999999999999999999999998654222111 1122333332222 348999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
|..-.++..||.+..++|+.++|+++|++++.+.+.
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988653
No 12
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.97 E-value=7.7e-27 Score=241.37 Aligned_cols=291 Identities=22% Similarity=0.295 Sum_probs=271.5
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
......|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++.+|+.+|++|+.
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455788888888899999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
+.+... |.+++..+.++.+||.+|...|++++|..++++|++|....++..+ .++..+.+++.++..++++++|..++
T Consensus 270 i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 270 IREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 999876 8889999999999999999999999999999999999998766554 67778899999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004812 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (729)
+++++++....+..+...+.++.+||.+|..+|++.+|.++|++|+.+.++..+..++.....+..||..|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 99999999877777777899999999999999999999999999999999998888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 662 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
..+|.++..+. +.+|+++|+....+.+|+.+|..+|++++|. ++.+.++...-
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~ 481 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999 99998885543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-26 Score=244.38 Aligned_cols=433 Identities=15% Similarity=0.179 Sum_probs=357.7
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
..+.-....+|.+..+|+.+|...|..++ |..|+.+|.+|+.+.+... +.....+|.|++.+|+.+.|+..
T Consensus 151 a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 151 AQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHH
Confidence 55667778899999999999999999997 9999999999999875542 22245678999999999999999
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004812 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (729)
|++++++. + ..+.++..||.+-....+ +..++..+.++... ++..+.++..|+..|+..|
T Consensus 222 ~~ralqLd-----p----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 222 FERALQLD-----P----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHHHhcC-----h----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcc
Confidence 99999997 2 345567777777665544 45566666666655 5778899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
+|..+..+...++.... .....+..++.+|..|..+|+|++|..+|.+++... +......++.+|.+|..
T Consensus 285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhHHHHH
Confidence 99999999999987662 234557789999999999999999999999887531 22235677899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004812 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
.|+++.|..+|++++.. .|....++..||.+|...+ ..+.|..++.++++. .+....+|
T Consensus 355 ~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~ 417 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAW 417 (1018)
T ss_pred hchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHH
Confidence 99999999999999998 7888999999999999886 567777888887776 34557899
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC--hH
Q 004812 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS--AF 598 (729)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~ 598 (729)
..++.++....-+.. +.+|..|+.+....... .-..+++++|..++..|++.+|...|.+|+..+....+.+. ..
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 999999987665555 99999999888876333 33578899999999999999999999999998553322221 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.....+++|.++...++++.|.+.|...+.. +|..+.++..||......++..+|..++..++.+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~------- 559 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI------- 559 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------
Confidence 3456889999999999999999999999998 9999999999998888899999999999999976
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+..++.++..+|.++....++..|. .-|+..++
T Consensus 560 -d~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~ 592 (1018)
T KOG2002|consen 560 -DSSNPNARSLLGNLHLKKSEWKPAK-KKFETILK 592 (1018)
T ss_pred -ccCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHh
Confidence 4556678888999999999999998 76666654
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=3.3e-25 Score=251.56 Aligned_cols=436 Identities=13% Similarity=0.032 Sum_probs=330.0
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004812 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
..+|...........+....|+ +++|+..|.++...- +..+.++..+|.++...|++++|+.+|++++.+
T Consensus 9 ~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 9 LKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred hccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666667777778888897 899998888877531 334667889999999999999999999999988
Q ss_pred chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004812 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQ 374 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (729)
. +..+. ++..+|.++...|++++|+..+++++.. .|.... +..+|.++...|++++|+..++
T Consensus 79 ~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 79 E-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred C-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 5 44332 3778999999999999999999999998 678888 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-----HcCCH-
Q 004812 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL-----SLSRY- 448 (729)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~- 448 (729)
+++++.|... .++..++.++...+..+.|+..++++.. .... ...........+..++. ..+++
T Consensus 141 ~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 141 QALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 9999987653 4577789999999999999998876542 0000 00000111122222222 22345
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 004812 449 --DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (729)
Q Consensus 449 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (729)
++|+..++.++....... ...+....+.......+...|++++|+..|+++++. +...|..+. ..+|.+
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~------~~~~P~~a~--~~la~~ 281 (765)
T PRK10049 211 IADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAE------GQIIPPWAQ--RWVASA 281 (765)
T ss_pred HHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCCCHHHH--HHHHHH
Confidence 678888888776643211 112333444444233446779999999999998776 222233333 336889
Q ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCCC-ChHH
Q 004812 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GERK-SAFF 599 (729)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~-~~~~ 599 (729)
|..+|++++|+.+|++++...+.. ..........++.++...|++++|+.+++++....+.. .... ....
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 999999999999999988643221 11112345667778899999999999999888753210 0001 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-------- 422 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-------- 422 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------
Confidence 456778999999999999999999999998 8888899999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...+++.+|.++...|++++|. ..++.+++.+|+
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd 459 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ 459 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 6888889999999999999999999 999999999998
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.7e-25 Score=245.74 Aligned_cols=362 Identities=13% Similarity=0.028 Sum_probs=281.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004812 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (729)
+...+..+...|++++|+..++.++... +.++. +++.+|.+....|++++|+..|++++.. +|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV--------NV 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence 4445677888999999999999988775 44443 4888888889999999999999999988 78
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004812 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
....++..+|.++...|++++|+..|++++.+.|.. ..++..++.++...|++++|+..+.+++.. .++
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~--------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~ 176 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN--------SQIFALHLRTLVLMDKELQAISLARTQAQE---VPP 176 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC
Confidence 888899999999999999999999999999887654 245888899999999999999988866542 222
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
. ...+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..|++++..
T Consensus 177 ~---~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---- 241 (656)
T PRK15174 177 R---GDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---- 241 (656)
T ss_pred C---HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 2 23333333 4778899999999988887651 1122234456678888999999999999999887
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHH----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
.+....++..+|.++...|++++ |+..|++++.+.|.. ..++..+|.++...|++++|+.++++
T Consensus 242 -----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 242 -----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33346778889999999999886 789999998887654 57788899999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004812 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
++.+. +....++..+|.++...|++++|+..|++++.. +|.....+..+|.++...|++++|+.
T Consensus 310 al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 88762 123467788899999999999999999999887 77776667778889999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004812 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703 (729)
Q Consensus 664 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A 703 (729)
.|+++++...... .+....+...+...+...+...+.
T Consensus 374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence 9999998743322 223344555666666666555544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=2e-25 Score=247.89 Aligned_cols=365 Identities=13% Similarity=0.083 Sum_probs=301.0
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004812 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
.++.+|+.-.-+|..+-+..+...+.. ......+..+...|++++|+..++..+.. .|....+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~ 81 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNE------QNIILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRR 81 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccc------cCHHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHH
Confidence 344555555455555444332221211 12445677788999999999999999988 6888999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004812 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
+|.+....|++++|+..|++++...|... .++..+|.++...|++++|+..|++++.+ .|....++
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~~~--------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~ 147 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVCQP--------EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIF 147 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHH
Confidence 99999999999999999999999987764 45899999999999999999999999864 45556788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004812 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (729)
..++.++...|++++|+..+++++.. .|.....+..++ .+...|++++|+..+++++..... .
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~--------~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~ 210 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQE--------VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------E 210 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh--------CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------c
Confidence 89999999999999999999988776 455555665554 478899999999999998776211 1
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHh
Q 004812 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD----SYDSFKNAISKLRAI 591 (729)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~ 591 (729)
.......++.++...|++++|+..|++++...+.. ..++..+|.++...|++++ |+..|++++.+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--- 280 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG-------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--- 280 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---
Confidence 12234567888999999999999999999875443 5778899999999999986 799999998862
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+....++..+|.++...|++++|+.++++++.. +|+...++..+|.+|...|++++|+..|++++..
T Consensus 281 -----P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 281 -----SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred -----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 224578999999999999999999999999998 8888889999999999999999999999999875
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 672 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.....+..+|.++...|++++|+ ..|+++++.+|+
T Consensus 348 --------~P~~~~~~~~~a~al~~~G~~deA~-~~l~~al~~~P~ 384 (656)
T PRK15174 348 --------KGVTSKWNRYAAAALLQAGKTSEAE-SVFEHYIQARAS 384 (656)
T ss_pred --------CccchHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhChh
Confidence 5776667777899999999999999 999999999997
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.3e-25 Score=215.00 Aligned_cols=392 Identities=18% Similarity=0.148 Sum_probs=301.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
+..+-..|.-+++.|+|++|+.+|.+|+++. ++.|. .|.+++-||...|+|++.++...+++++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi----FYsNraAcY~~lgd~~~Vied~TkALEl------- 178 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI----FYSNRAACYESLGDWEKVIEDCTKALEL------- 178 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch----hhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 4456678999999999999999999999997 44443 2889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHH------------------HHHHHH---------HhcCCC--CCHHHHHHH
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQ------------------MALDIH---------KDNGSP--ASLEEAADR 395 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~~---------~~~~~~--~~~~~a~~~ 395 (729)
+|+...+++..+.++..+|++++|+.-.. +.|... ..+..+ ++......+
T Consensus 179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 89999999999999999999998865432 111110 000111 000001111
Q ss_pred HH--------------------H--HHHHHHhC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHHH
Q 004812 396 RL--------------------M--GLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSIGDTYL 443 (729)
Q Consensus 396 ~~--------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~la~~~~ 443 (729)
+. + +.-+...+ .|..|...+.+.......... ....+.++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 10 0 11111112 456666666555432221111 1244778888999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004812 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (729)
..|++-.|...|+.++.+ +|.....|..+|.+|....+.++-...|.+|..+ +|....+|+..
T Consensus 338 L~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~dvYyHR 400 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPDVYYHR 400 (606)
T ss_pred hcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCchhHhH
Confidence 999999999999999998 6777777999999999999999999999999999 55557789999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004812 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (729)
|.+++-++++++|+.-|++++.+.|.. +..+..++.+.+++++++++...|+.+...++. .+.++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy 465 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY 465 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH
Confidence 999999999999999999999998877 577889999999999999999999999887532 45788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
...|.++..+++|++|++.|..|+++-...... +- .+..+..-|.+. .-.+++..|+.++++|+++ +|.
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpk 535 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPK 535 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cch
Confidence 899999999999999999999999983221110 00 222222222222 2348999999999999987 799
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.-.++..||.+..++|+.++|+ +.|++++.+-.
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAi-elFEksa~lAr 568 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAI-ELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999 99999887654
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=5.5e-24 Score=241.03 Aligned_cols=459 Identities=13% Similarity=0.019 Sum_probs=333.2
Q ss_pred cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004812 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
..+......|++..++..+..+...+|+...+++.++..++..|+ +++|+.++++|++.- |.....+..+
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L 118 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL 118 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence 344445666888888899999999999999999999999999997 999999999999862 2334444445
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHH-------------------------------HHHHHHHHHHHHHH
Q 004812 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM 320 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~ 320 (729)
+.+ +++++|+..|++++...+.......... .....+.++.+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 444 8888888888888877532111110000 01124445889999
Q ss_pred cCCHHHHHHHHHHHHHHH--------------HHH---------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004812 321 LGQLENSLMCYTTGLEVQ--------------KQV---------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 321 ~g~~~~A~~~~~~al~~~--------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
+|++++|+..+.++++.. ... ..+.-.....++..++..|...|+.++|...+++.-
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999988876541 000 000001233455567778888888888877765532
Q ss_pred HHHHhcCCCCC---------------------------------------------------------------------
Q 004812 378 DIHKDNGSPAS--------------------------------------------------------------------- 388 (729)
Q Consensus 378 ~~~~~~~~~~~--------------------------------------------------------------------- 388 (729)
...+.......
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 22111000000
Q ss_pred ------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------HH-------HhC--------
Q 004812 389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IAN-------- 425 (729)
Q Consensus 389 ------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~-------~~~-------- 425 (729)
+.....+..++......|++++|...|+++.. +. ...
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 00012233344555667788888887776643 11 000
Q ss_pred ----------------------------------CCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 426 ----------------------------------DQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 426 ----------------------------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
+..|. ...++.++|.++.. +++.+|+..+.+++..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-------- 505 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-------- 505 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence 01122 55677888888877 7888899988888877
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|.. .....+|.++...|++++|+..|++++... .. ...+..+|.++...|++++|+.+|++++...+.
T Consensus 506 ~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~------p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 506 QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHD------MS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccC------CC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 4543 346667777789999999999999875541 11 123678899999999999999999999886433
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ...+..++......|++++|+..|++++++. + . ..++..+|.++.+.|++++|+..|++++.+
T Consensus 575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-------P-~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA-------P-S-ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------C-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 2444456666667799999999999999862 2 2 468899999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+|+...++.++|.++...|++++|+..|++++++ +|+...+++++|.++...|++++|. ..|+
T Consensus 639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~ 701 (987)
T PRK09782 639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYAR 701 (987)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence 8999999999999999999999999999999987 6888999999999999999999999 9999
Q ss_pred HHHhhccc
Q 004812 710 TLLDANSR 717 (729)
Q Consensus 710 ~al~~~p~ 717 (729)
++++++|+
T Consensus 702 ~Al~l~P~ 709 (987)
T PRK09782 702 LVIDDIDN 709 (987)
T ss_pred HHHhcCCC
Confidence 99999998
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.4e-23 Score=238.30 Aligned_cols=414 Identities=13% Similarity=-0.015 Sum_probs=313.9
Q ss_pred cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004812 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (729)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (729)
.-.|+..++++.+......+|..+.++..+|..+...|+ +++|+.+|++++... |....++..++.++..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 345555566666666766778889899999999999997 999999999999863 3335567889999999
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004812 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (729)
.|++++|+..+++++... ++++ . +..+|.++...|++++|+..++++++. .|....++..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la 157 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYV 157 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 999999999999999875 3332 3 778999999999999999999999999 788889999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HHhCCH---HHHHHHHHHHHHHHHhCCC-C
Q 004812 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-----ETKGDH---EAALEHLVLASMTMIANDQ-D 428 (729)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~-----~~~g~~---~~A~~~~~~al~~~~~~~~-~ 428 (729)
.++...+..++|+..++++.. .|.... .........+..+. ...+++ ++|+..++.++........ .
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 999999999999999987664 222100 00000111122222 222345 7788888887765433322 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+....+.......+...|++++|+..|++++.. ++..|..+. ..+|.+|...|++++|+.+|++++.....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~-- 304 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET-- 304 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC--
Confidence 334444444233446779999999999998775 111244433 33689999999999999999998865211
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC-------CC-CCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQ-QSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
...........++.++...|++++|+.+++++....+... .. ......++..++.++...|++++|+..
T Consensus 305 ---~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 305 ---IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred ---CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1011134566777788999999999999999988754211 11 112345677899999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
+++++... +....++..+|.++...|++++|+..+++++.+ +|+...+++.+|.++...|++++
T Consensus 382 l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 382 ARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence 99998762 223578999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004812 661 AIEILEFVVGI 671 (729)
Q Consensus 661 A~~~~~~al~~ 671 (729)
|...++++++.
T Consensus 446 A~~~~~~ll~~ 456 (765)
T PRK10049 446 MDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 20
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=201.61 Aligned_cols=422 Identities=14% Similarity=0.105 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
..+++.++..|-... .+.+|+..|+-.++ ..--|.....-.++|.+|++..+|.+|+.+|+.++...+..
T Consensus 201 fsvl~nlaqqy~~nd-m~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-- 270 (840)
T KOG2003|consen 201 FSVLFNLAQQYEAND-MTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-- 270 (840)
T ss_pred HHHHHHHHHHhhhhH-HHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--
Confidence 456778887666554 46666666654443 22224445556789999999999999999999999765322
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
.....+..+.++|..+.+.|+|++|+..|+.+++. .|... +-++|..+++..|+-++-.+.|++.+.+-
T Consensus 271 --nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 271 --NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred --chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 22456777999999999999999999999999988 46554 45567778888899888888888887653
Q ss_pred HhcCCC---------CCHHHH-----------------------------------------------------------
Q 004812 381 KDNGSP---------ASLEEA----------------------------------------------------------- 392 (729)
Q Consensus 381 ~~~~~~---------~~~~~a----------------------------------------------------------- 392 (729)
....+. +....-
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI 419 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence 222111 000000
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
..-.+.+..+.+.|+++.|++.+.-. ... +......+-.+|..+++.+| ++.+|..+...++.+ +
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~----~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------d 486 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVF----EKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------D 486 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHH----Hhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------c
Confidence 00011233455667777777665422 111 22222233344544444432 566666666666665 5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
...+.++.+.|.+-+..|++++|.+.|++++.- +.....+++++|..+..+|+.++|+.+|-+.-.+....
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 556677777777777888888888888887765 44456778888888888888888888888777776655
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
+.++..++.+|..+.+..+|++++.++..+.+ ..+.++..||.+|-+.|+-.+|..++-.....
T Consensus 558 -------~evl~qianiye~led~aqaie~~~q~~slip--------~dp~ilskl~dlydqegdksqafq~~ydsyry- 621 (840)
T KOG2003|consen 558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIP--------NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY- 621 (840)
T ss_pred -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--------CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-
Confidence 57777888888888888888888877766531 12456777788888888887777777766665
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
.|-..++...||..|....-+++|+.+|+++.-+ .|........++.++.+.|+|.+|. ..|+.
T Consensus 622 -------fp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~-d~yk~ 685 (840)
T KOG2003|consen 622 -------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAF-DLYKD 685 (840)
T ss_pred -------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHH-HHHHH
Confidence 5667777777777777777778888888877654 4777777777778888888888888 77777
Q ss_pred HHhhccc
Q 004812 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
.-...|+
T Consensus 686 ~hrkfpe 692 (840)
T KOG2003|consen 686 IHRKFPE 692 (840)
T ss_pred HHHhCcc
Confidence 7777665
No 21
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=195.43 Aligned_cols=409 Identities=16% Similarity=0.167 Sum_probs=313.1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004812 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
...|+....-...|+++++... |.+|+.+|+-|+...+.+. .......+.++|..+.+.|+|+.|+..|+.+++.
T Consensus 231 kmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~ 305 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE 305 (840)
T ss_pred cccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh
Confidence 4457777777888999998875 9999999999998765442 1335677888999999999999999999988876
Q ss_pred chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh------CCCCc---------------------
Q 004812 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL------GETDP--------------------- 347 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~--------------------- 347 (729)
. + .+.+-++|..|++..|+-++-.+.|.+.+.+-..+- ..++|
T Consensus 306 ~-----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 306 A-----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred C-----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 4 1 233456677777778887777777777655411000 00011
Q ss_pred ---------------------h--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004812 348 ---------------------R--------------------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 348 ---------------------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
+ ....-.+.+..|.+.|+++.|++.++-.-...
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd------ 449 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD------ 449 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc------
Confidence 0 00111233555777888888887764332221
Q ss_pred CCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 387 ASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (729)
......+-.+|..+++.+| ++..|..+...++.+ +...+.++.+.|.+.+..|++++|.+.|++++.-
T Consensus 450 -nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--- 519 (840)
T KOG2003|consen 450 -NKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--- 519 (840)
T ss_pred -chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---
Confidence 1112234556666666644 788888888887643 3444667888999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
+.....+++++|..+..+|+.++|+.+|-+.-.+... .+.++..++.+|..+.+..+|++++.++.
T Consensus 520 -----dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 520 -----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred -----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7778899999999999999999999999999888543 47889999999999999999999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
.+.|.. ..++..||.+|-+.|+-.+|..++-.....++ ....+...||..|....-+++|+.+|+
T Consensus 586 slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryfp--------~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 586 SLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFP--------CNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred ccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhcccccC--------cchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888766 46788999999999999999998876665432 234566778999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+|.-+ .|........+|.|+.+.|+|.+|.+.|+..-.- .|...+++..|.++.-.+|-
T Consensus 651 kaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence 99888 7888888889999999999999999999987654 48888888888888777664
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=3.2e-20 Score=206.38 Aligned_cols=437 Identities=12% Similarity=-0.002 Sum_probs=323.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004812 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
.....|..+...+..+...++.|+ ++.|+..|+++++.. |........+..++...|++++|+.++++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 445667778899999999999997 999999999998864 2222122267778888899999999999998
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004812 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (729)
.-. +.. ...+..+|.++..+|++++|+..|+++++. +|....++..++.++...++.++|+..
T Consensus 96 ~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 96 SSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred cCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 321 111 123555688999999999999999999998 788888888999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
++++....+... .+..++.++...++..+|++.+++++.. .|....++..+..++...|-...|.
T Consensus 159 l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 159 ATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999988876531 2344455555577777799999988754 2222233333333333333322222
Q ss_pred H-----------------------------------------HHHHHHHHHHHhcC------CCChhHHHHHHHHHHHHH
Q 004812 453 F-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMYN 485 (729)
Q Consensus 453 ~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~~ 485 (729)
+ ..++++........ +.++....+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 2 22333333333221 123344556666667788
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004812 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (729)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (729)
..|++.+++..|+..... +..-|. .+...+|..|...+++++|+.+|++++.-.+........ ......|.
T Consensus 304 ~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L~ 374 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDLY 374 (822)
T ss_pred HhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHHH
Confidence 889999999999876654 222233 356778999999999999999999987755322111111 22235678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-h---C---CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 566 VMYYMLGNYSDSYDSFKNAISKLRA-I---G---ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~-~---~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
..|...++|++|..++++..+..+- . + ....+........++.++...|++.+|.+.+++.+.. .
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------a 446 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------A 446 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 8899999999999999998773220 0 0 1122335578888899999999999999999999988 8
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|.+..++..+|.++...|.+.+|...++.+..+ +|+...+...++.++..+|++++|. .....+++..|+
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe 516 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE 516 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence 999999999999999999999999999888765 7999999999999999999999999 999999999998
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.9e-22 Score=195.99 Aligned_cols=412 Identities=20% Similarity=0.236 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcccc
Q 004812 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (729)
.+...|+..+..|+ |+.|+.+|..|+.+- |.....|.+...+|..+|+|++|+.--.+.+++. +.
T Consensus 4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~ 68 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD 68 (539)
T ss_pred HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence 45678999999997 999999999999873 2346678899999999999999999999999986 33
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC-----------------
Q 004812 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ----------------- 365 (729)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 365 (729)
. ...|..+|..+..+|+|++|+..|.+.|+. +|.....+..|+.++.....
T Consensus 69 w----~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 69 W----AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred h----hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 3 346999999999999999999999999999 78888888888888722210
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------HhC
Q 004812 366 ----FSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTM--------------IAN 425 (729)
Q Consensus 366 ----~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------~~~ 425 (729)
+-.....|...++..+.+...-.. ........+|.+. |.... ..+....... ...
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~---~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK---GVDEL--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh---cCccc--cccccccccCCCCCCcccccCCCCCcc
Confidence 111122223333333222110000 0000001111110 00000 0000000000 000
Q ss_pred CCC------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 426 DQD------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 426 ~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
.+. ...+.-...+|...+...++..|+++|..++++ + .....+.+.+.+|+..|.+.+.+..+..
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 000 113445678999999999999999999999998 4 5667788999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
+++..... ..+...++.++..+|..|..+++++.|+.+|++++..... ..+.......++++.
T Consensus 283 a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 283 AVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK 345 (539)
T ss_pred HHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence 88874332 1112235566667888999999999999999998776543 233334444455554
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004812 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
..+...-+ . +..+.-...-|..++..|+|..|+.+|.+|+.. +|+....|.+.|.||..+|.+.
T Consensus 346 ~~e~~a~~-------~-pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 346 EAERKAYI-------N-PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHhh-------C-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence 44433322 1 112444555688899999999999999999888 8888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 660 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.|+...+.++++ +|.+..+|.+-|.++..+.+|++|. +.|+++++.+|+
T Consensus 410 ~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~ 458 (539)
T KOG0548|consen 410 EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence 999999988877 7889999999999999999999999 999999999987
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.6e-23 Score=207.92 Aligned_cols=303 Identities=16% Similarity=0.117 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 352 TCRYLAEAHVQA--LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 352 ~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
.+..+|..|... -+..+|+..|.+.-..... ...++..+|..|+.+++|++|..+|+.+.++. |
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n--------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p 384 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN--------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------P 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------c
Confidence 344444444433 3567888888873222221 13678899999999999999999998775432 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
......-....+++.+.+--+--...+..++. +|..+..|..+|.+|..+++++.|+++|++|+++
T Consensus 385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------ 450 (638)
T KOG1126|consen 385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------ 450 (638)
T ss_pred ccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------
Confidence 11111112223333333322222222333333 7888899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
+|..+.+|..+|.-+.....+|.|..+|+.|+.+.+++ ..+|+.+|.+|.++++++.|+-+|++|+++
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-- 518 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-- 518 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC--
Confidence 66678899999999999999999999999999988877 589999999999999999999999999987
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
.+....++..+|.++.++|+.++|+.+|++|+.+ +|......+..|.++..++++++|+..+++..
T Consensus 519 ------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 519 ------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred ------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 2334567888999999999999999999999999 88888899999999999999999999999998
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++ -|+...+++.||.+|.+.|+.+.|+ ..|--|++++|.
T Consensus 585 ~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk 623 (638)
T KOG1126|consen 585 EL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK 623 (638)
T ss_pred Hh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence 87 4899999999999999999999999 999999999998
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=2.5e-21 Score=219.51 Aligned_cols=361 Identities=13% Similarity=0.001 Sum_probs=286.8
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCC---HHHHH----------
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSL---------- 328 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~---------- 328 (729)
|.....+..++......|++++|..+|+++...... ... .......++.+|...+. ..+++
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----ARL--SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----ccc--CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 334667888999999999999999999999985311 111 11224477777776655 33332
Q ss_pred ------------HHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004812 329 ------------MCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394 (729)
Q Consensus 329 ------------~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 394 (729)
..+..+... ++ ..|. ...++..+|.++.. +++.+|+..+.+++...|.. ..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---------~~ 511 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---------WQ 511 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------HH
Confidence 222222222 22 2456 88899999999987 89999999999999887642 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004812 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (729)
Q Consensus 395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (729)
...+|.++...|++++|+..|+++... .+. ...+..+|.++...|++++|+.+|++++.. .|...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccH
Confidence 566777888999999999999986431 111 234678899999999999999999999987 56666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
..+..++..+...|++++|+..|++++++ .|. ...+.++|.++...|++++|+..|++++.+.|+.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---- 642 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---- 642 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----
Confidence 66666777777789999999999999988 333 5688999999999999999999999999998766
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004812 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (729)
..++.++|.++...|++++|+.+|++++++. +....++.++|.++...|++++|+.+|++++++
T Consensus 643 ---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l----- 706 (987)
T PRK09782 643 ---SNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD----- 706 (987)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 5788999999999999999999999999862 234678999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCH
Q 004812 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~ 700 (729)
.|+...+....|.+.....+++.|.+.+.++..+ .|... +....|.++...+++
T Consensus 707 ---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 707 ---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred ---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccc
Confidence 8999999999999999999999999999998865 35544 666777777776665
No 26
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=4.6e-22 Score=190.27 Aligned_cols=330 Identities=15% Similarity=0.143 Sum_probs=278.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.-|.-+++.|++...+.+|+.|++.- .++......+|..||.+|+.+++|++|+++...-+.+.+.+. + ....
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-d-klGE 94 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-D-KLGE 94 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-c-hhcc
Confidence 34778899999999999999999874 555555566799999999999999999999888887765542 1 2344
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC--------------------HH
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HE 409 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------------~~ 409 (729)
+.+.-+||.++...|.|++|+.++.+-+.+.+..++. ...+.+++++|.+|...|+ ++
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 5677899999999999999999999999999988854 6678899999999998875 56
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004812 410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489 (729)
Q Consensus 410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 489 (729)
.|.++|..-+.+....++......++-+||..|+-+|+|+.|+.+.+.-+.+.++.+ +......++.++|.++..+|+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcc
Confidence 788888888888888888888899999999999999999999999999999988876 345567889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004812 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (729)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (729)
++.|+++|+..+.+..++. +....+...+.||..|.-..++++|+.|+.+-+.|.... ++......+++.||..|.
T Consensus 251 fe~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFN 326 (639)
T ss_pred cHhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH
Confidence 9999999999999887752 244457788899999999999999999999999998876 666666788999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004812 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (729)
..|..++|+.+.++.+++..++.+.... ..+..++.......|..
T Consensus 327 alg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQE 371 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCC
Confidence 9999999999999999999888776533 23455566666666653
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.5e-21 Score=201.42 Aligned_cols=309 Identities=15% Similarity=0.143 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
...+.+|..+...|++++|+..|+++++..+.. ..++..+|.++...|++++|+..+++++.. .......
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~ 105 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQ 105 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHH
Confidence 455667888899999999999999999986543 356899999999999999999999987642 0111123
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
...++..+|.+|...|++++|+.+|+++++. .+....++..++.++...|++++|+..+++++.....
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---- 173 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---- 173 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC----
Confidence 3467889999999999999999999999876 5667788999999999999999999999998876322
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
.........+..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 244 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD-- 244 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 1122345567789999999999999999999999876543 4577889999999999999999999998752
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+.....++..++.+|...|++++|+.++++++.. +|+.. .+..++.++...|++++|+.+++++++
T Consensus 245 -----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 245 -----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred -----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2223567788999999999999999999999987 56554 448899999999999999999999997
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHHHHh
Q 004812 671 IREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLD 713 (729)
Q Consensus 671 ~~~~~~~~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~ 713 (729)
. +|+.......++..+.. .|+..+++ ..+++.++
T Consensus 311 ~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~~ 346 (389)
T PRK11788 311 R--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLVG 346 (389)
T ss_pred h--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHHH
Confidence 6 57766544444443322 45888887 77766553
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-20 Score=181.33 Aligned_cols=375 Identities=13% Similarity=0.082 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...++..|.++...|....|+..|..++... +..+.+|..|+.+.... +.......- ..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~~-------e~~~~l~~~-----l~ 222 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---------PWFWSAWLELSELITDI-------EILSILVVG-----LP 222 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---------CcchHHHHHHHHhhchH-------HHHHHHHhc-----Cc
Confidence 4456667777777777777777777776543 12333455555443221 111111100 00
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 423 (729)
.......-+.++.++....+.++++.-++....+ .+.. ...-...|.+.....++++|+..|+...+
T Consensus 223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~k--- 290 (559)
T KOG1155|consen 223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRK--- 290 (559)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh---
Confidence 0123334455666777777777777777666655 2222 13456678888899999999999987653
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
++|-...-+-....+++-..+-.+-.-..+.+..+ +...+.+...+|+.|...++.++|+.+|++|+++
T Consensus 291 ---nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 291 ---NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred ---cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 12322222223334444444333322333344444 4555677788999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
+|....+|..+|.-|..+.+...|+..|++|+++.|.. ..+|+.||..|.-++-+.=|+-+|++
T Consensus 360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 66678899999999999999999999999999998877 58999999999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004812 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
|+.+. +.....|..||.||.+.++.++|+.+|.+|+.. ......++..||.+|.++++.++|..
T Consensus 424 A~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 424 ALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99862 234679999999999999999999999999987 34455699999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 664 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|++.++.. ..-|...|....+...||..+.+.+++++|. .+...++.-++.
T Consensus 488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCch
Confidence 999999976 4556778888999999999999999999998 877777766544
No 29
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-21 Score=187.43 Aligned_cols=330 Identities=17% Similarity=0.186 Sum_probs=277.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004812 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
|.-+++.|++...+.+|+.|++...+.. .....+|..||.+|+.+++|++|+++...-+.+.+..++....+...-
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 5567889999999999999998765443 334567999999999999999999998888888888888888888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 004812 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK--------------------LRESKSY 496 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~ 496 (729)
+||.++-.+|.|++|+.++.+-+.+.++.+ +......+++++|.+|...|+ ++.|.++
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 999999999999999999999999998887 356678899999999998764 3556677
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Q 004812 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576 (729)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 576 (729)
|..-+++.++. .+......++-+||..|+.+|+|+.|+...+.-+.+.... |+....-.++.++|.+|.-.|+++.
T Consensus 178 y~eNL~l~~~l---gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 178 YMENLELSEKL---GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHh---hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHh
Confidence 77777776663 2344456789999999999999999999999999998876 7777777889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
|+++|+..+.+..++++.. ..+...+.||..|.-..++++|+.|+++-+.+.+.+.. ......+++.||..|...|
T Consensus 254 A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhh
Confidence 9999999999999988764 45778889999999999999999999999999888755 4566779999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004812 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (729)
Q Consensus 657 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~ 702 (729)
..++|+.+.++.+++..++..+. ....+..+|..+....|..+-
T Consensus 330 ~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 330 EHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence 99999999999999887764322 234556677777777776543
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.9e-20 Score=198.80 Aligned_cols=308 Identities=14% Similarity=0.111 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
..+.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..+++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3667789999999999999999999998 68888999999999999999999999999888632 11112
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
....++..+|.+|...|++++|+.+|.+++.. .+....++..++.++...|++++|+..+++++..... ..
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence 23457899999999999999999999988642 4455678889999999999999999999998875211 01
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.......+..+|.++...|++++|+.+|+++++.. +....++..+|.++...|++++|+.++++++...+.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 11234567789999999999999999999999872 234567889999999999999999999999986443
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ...++..++.+|...|++++|+..+++++... + +. ..+..++.++...|++++|+.+|+++++.
T Consensus 247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY----P-GA----DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-Cc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 23567789999999999999999999988762 1 11 23478899999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVG 670 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 670 (729)
.|+.......++..+.. .|+..+|+..+++.++
T Consensus 312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 78776544444433322 5689999999998885
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.7e-20 Score=177.47 Aligned_cols=373 Identities=18% Similarity=0.138 Sum_probs=285.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
..-.++..|.++...|. ..+|+..+..++..+ |..+.+|..|+.+.-. ++.......-.
T Consensus 163 D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~-------~e~~~~l~~~l---- 221 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRY---------PWFWSAWLELSELITD-------IEILSILVVGL---- 221 (559)
T ss_pred hhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcC---------CcchHHHHHHHHhhch-------HHHHHHHHhcC----
Confidence 36678888999988885 899999999888654 5567777777666422 22222211110
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004812 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
+.+ ..+..-+.++.++....+.++++.-++...... -|.....-...|.+...+.++++|+..|+..++.
T Consensus 222 -~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn 291 (559)
T KOG1155|consen 222 -PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN 291 (559)
T ss_pred -ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 110 122335567888888888888888877766651 3555566677888999999999999999998877
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (729)
.|-..+. +-....+++-..+-.+ +.++.+ ..... +.....+.+.+|..|...++.++|+.+|++|+
T Consensus 292 DPYRl~d--------mdlySN~LYv~~~~sk-Ls~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 292 DPYRLDD--------MDLYSNVLYVKNDKSK-LSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred CCCcchh--------HHHHhHHHHHHhhhHH-HHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 5433322 2333444443333222 222211 11111 22233566778999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004812 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (729)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (729)
++ +|....+|..+|.-|..+.+...|+..|++|+++ .|....+|+.||+.|..++-+.=|+-+
T Consensus 358 kL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 358 KL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred hc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 99 8999999999999999999999999999999999 555688999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 004812 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619 (729)
Q Consensus 540 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 619 (729)
|++|....|.. ..+|..||.+|.+.++.++|+++|.+++..- .....++..||.+|.++++..+|
T Consensus 421 fqkA~~~kPnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 421 FQKALELKPND-------SRLWVALGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHhcCCCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHHH
Confidence 99999987765 5789999999999999999999999999862 12457899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
..+|++.++.... .+...+....+...||..+.+.+++++|..+..+++.
T Consensus 486 a~~yek~v~~~~~-eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 486 AQYYEKYVEVSEL-EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999997633 3444677888888899999999999999999888874
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-20 Score=185.45 Aligned_cols=430 Identities=14% Similarity=0.133 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc------
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------ 294 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 294 (729)
+.-.+.+|++++..++ |..|......- .+ . .....+.+..+.++..+.+|++|..++.+.-..
T Consensus 49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~l------e---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KL------E---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hh------h---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence 3355678888988887 66655543332 11 1 123567788899999999999999988843110
Q ss_pred chhh---------ccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004812 295 PVIE---------EGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (729)
Q Consensus 295 ~~~~---------~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (729)
.... .+.+. .......++..|.+|..+.++++|...|.+|+.. ++...++...+-..+...-
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~ 189 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTA 189 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcch
Confidence 0000 00000 1122344677899999999999999999999877 4444444433322221111
Q ss_pred --------CHH------HHHHHHHHHHHHH-HhcCCC------------CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004812 365 --------QFS------EAQKFCQMALDIH-KDNGSP------------ASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 365 --------~~~------~A~~~~~~al~~~-~~~~~~------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
..+ +=.+.++...++. .+.... ........+...+..++..++|.+..+....
T Consensus 190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ 269 (611)
T KOG1173|consen 190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEE 269 (611)
T ss_pred hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHH
Confidence 000 0011111111111 000000 0011134566678888999999999999887
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
.+.. . +......-..+| ++...|+..+-...-.+.++. .|..+..|+.+|..|...|++.+|.++|
T Consensus 270 lle~---d--pfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~--------yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 270 LLEK---D--PFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDL--------YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HHhh---C--CCCcchHHHHHH-HHHHhcccchHHHHHHHHHHh--------CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 7653 2 222222334556 778888876655555555555 7999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004812 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
-++..+ ++....+|...|..+...|..++|+..|..|-++.+... .-...+|.-|...+++..|
T Consensus 336 SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-------lP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 336 SKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-------LPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-------chHHHHHHHHHHhccHHHH
Confidence 999988 566788999999999999999999999999999987652 2235689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004812 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
..+|.+|+.+.+ ..+.++..+|.+.+..+.|.+|..+|+.++...+..... .+.....+.+||.+|.+++.
T Consensus 400 e~Ff~~A~ai~P--------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 400 EKFFKQALAIAP--------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHHHHHHHhcCC--------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhh
Confidence 999999999843 245788999999999999999999999999776665543 33455688999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++|+.+|++++.+ .|..+.++..+|.+|..+|+++.|+ .+|.++|.++|+
T Consensus 471 ~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~ 521 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence 99999999999987 5888999999999999999999999 999999999997
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-21 Score=197.89 Aligned_cols=300 Identities=17% Similarity=0.174 Sum_probs=247.7
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004812 310 GHMQLGDTYA--MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 310 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
.+..+|..|. .+-+..+|+..|.+.-.. .+...+++..+|..|+.+++|++|..+|+.+-++.|-..+.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~- 389 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG- 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-
Confidence 3455555554 344567888888883333 57777999999999999999999999999998887655432
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
.-....+++.+.+ +-++.++.+-+ ...++.....|+.+|.||..+++++.|+++|++|+++
T Consensus 390 -------meiyST~LWHLq~-~v~Ls~Laq~L-----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------ 450 (638)
T KOG1126|consen 390 -------MEIYSTTLWHLQD-EVALSYLAQDL-----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------ 450 (638)
T ss_pred -------hhHHHHHHHHHHh-hHHHHHHHHHH-----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------
Confidence 2223333333322 22333332222 2235556689999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
+|..+.+|..+|.=+....+++.|..+|+.|+.+ .+....+|+.||.+|.++++++.|.-+|++|+++.
T Consensus 451 --dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 451 --DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred --CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence 8999999999999999999999999999999998 56668899999999999999999999999999998
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
|.. ..+...+|.++.+.|+.++|+.+|++|+.+- +......+..|.++...+++++|+..+++..
T Consensus 520 P~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 520 PSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred ccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 776 4667889999999999999999999999862 2234577889999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
++ -|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus 585 ~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 585 EL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred Hh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 98 8999999999999999999999999999999876
No 34
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=1.6e-19 Score=204.90 Aligned_cols=433 Identities=11% Similarity=0.035 Sum_probs=258.0
Q ss_pred ccccccccccccCcccccCCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004812 195 TPMKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (729)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (729)
..+...+++..+.+.+...... .+-....+..+...+...++ ++.|...+....+.- -. |+ ...+..+.
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~--~~-~~~~n~Li 165 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FE--PD-QYMMNRVL 165 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CC--cc-hHHHHHHH
Confidence 3345555555555444333221 11234455666666777775 777777776665431 12 22 44577778
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------
Q 004812 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV----------- 341 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------- 341 (729)
..|.+.|++++|..+|++..+. ...+|..+...|...|++++|+..|++++......
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 8899999999999999887532 12247888888889999999999998876431000
Q ss_pred -----------------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004812 342 -----------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (729)
Q Consensus 342 -----------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~ 404 (729)
....-.....++..|...|.+.|++++|...|++.... ...+|+.+...|..
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------~~vt~n~li~~y~~ 302 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----------TTVAWNSMLAGYAL 302 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHh
Confidence 00000001123345556666666777666666554210 02356666677777
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004812 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (729)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (729)
.|++++|+..|.+... .+..|+. .++..+...+...|++++|.+.+..+++. ..+....++..|...|
T Consensus 303 ~g~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 303 HGYSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLY 370 (697)
T ss_pred CCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHH
Confidence 7777777776665432 2222222 35566666667777777777666666554 1233445666677777
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004812 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (729)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (729)
.+.|++++|...|++..+. ...+|+.+...|...|+.++|+++|++.... |..+. ..++..+
T Consensus 371 ~k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~l 432 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPN-HVTFLAV 432 (697)
T ss_pred HHCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC-HHHHHHH
Confidence 7777777777766654211 1345666777777777777777777765543 22222 2345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004812 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (729)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 644 (729)
...+...|..++|..+|+.+.+. . +..+ ....|..+..+|.+.|++++|.+++++.- ..|+. .+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~---~-g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~~---------~~p~~-~~ 496 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSEN---H-RIKP--RAMHYACMIELLGREGLLDEAYAMIRRAP---------FKPTV-NM 496 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHh---c-CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHCC---------CCCCH-HH
Confidence 66667777777777777665432 1 1111 23456667777777777777776665421 12332 35
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
|..|...+...|+++.|...+++.+++ .|.....|..|..+|...|++++|. +.++...+.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~ 557 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHc
Confidence 667777777777777777777766543 3555556777777888888888887 777766544
No 35
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-18 Score=178.94 Aligned_cols=434 Identities=14% Similarity=0.054 Sum_probs=334.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+.++-.+...+...|+ |..+.++|++++...- .....|+.++.+|...|.-..|+.+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~~---------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-- 388 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFSF---------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-- 388 (799)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhh---------hhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence 455566666777777787 8899999998887642 2356688899999999999999999999987742
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-----------CHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS 367 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~ 367 (729)
.+.++. ..++.-..|+...+.+++++.+..+++...... .......++..+|.+|..+- ...
T Consensus 389 -~ps~~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 389 -QPSDIS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred -CCCcch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 122222 234455566778899999999999999976332 23445677888888876542 346
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004812 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (729)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (729)
++++.+++++++.+.+. .+.+.++.-|..+++.+.|+++.++++.+. ....+.+|..++.++...++
T Consensus 462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhh
Confidence 78888888888876654 458899999999999999999999998652 33456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004812 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (729)
+.+|+.....+++- .+.+.........+-...++.++|+..+...+.+++...+-...-+........+.+.
T Consensus 529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 99999999999987 4554455555566666789999999999999999875321110111122222333444
Q ss_pred HhcchHHHHHHHHHHHHHHHHhC----------------CCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
....+..+|+..+.++..+.... ++.. .....+|...+..+...++.++|..++.++-.+.
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 44556667777666665554311 1111 1234567788999999999999999999988764
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 004812 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE--ILE 666 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~ 666 (729)
+..+..|+..|.++...|++.+|.+.|..|+.+ +|+...+...+|.++...|+..-|.. ++.
T Consensus 681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 346788999999999999999999999999999 89999999999999999999888888 999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 667 ~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++++ +|.+.++|+.||.++..+|+.++|. .+|..++++.+.
T Consensus 745 dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S 786 (799)
T KOG4162|consen 745 DALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES 786 (799)
T ss_pred HHHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence 99987 7999999999999999999999999 999999999887
No 36
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=1.5e-17 Score=190.41 Aligned_cols=417 Identities=12% Similarity=0.066 Sum_probs=289.5
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh
Q 004812 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI 297 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (729)
+.....++..-..+.+.|+ +.+|++.|++.... +.. +.....+..+...+...|..++|..+|+....
T Consensus 367 ~~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---- 434 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---- 434 (1060)
T ss_pred CCCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----
Confidence 3344455556666778887 88888887765431 111 11233344455667788888888888876543
Q ss_pred hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004812 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
+ ...+|..+-..|...|++++|..+|.++.+.. -.....+|..+...|.+.|++++|..+|+++.
T Consensus 435 ---p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 435 ---P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred ---C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 1 12347777788888899999888888876541 12234667788888888899999888888876
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (729)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (729)
+.... + + ..+|..+...|.+.|++++|+..|..... .+..|+ ..+|..+...|.+.|++++|.+.|.+
T Consensus 500 ~~Gv~---P-d---vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 500 NAGVE---A-N---VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HcCCC---C-C---HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 53211 1 1 35688888888888999998888876643 233333 35678888888888999888888887
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004812 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (729)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (729)
....... -.|+ ..+|..+...|.+.|++++|.++|+++.+. +. .....+|..+...|.+.|++++|+
T Consensus 568 M~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~------gi--~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 568 MKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY------NI--KGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred HHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CC--CCChHHHHHHHHHHHhcCCHHHHH
Confidence 7653100 0232 467778888888889999998888887665 11 112456788888888889999888
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHH
Q 004812 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 617 (729)
.+|.+.... +..+. ..+|..+...|.+.|++++|..++.++.+. +-. ....+|..+...|.+.|+++
T Consensus 635 ~lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~---pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 635 SIYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK---LGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHHHhCCCHH
Confidence 888877653 22222 346777888888888888888888887642 111 12457888888888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
+|.++|++.... +. .|+ ..+|..|...|.+.|++++|+++|++.... .-.|+ ..++..|...+...
T Consensus 702 eA~~lf~eM~~~-----g~-~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 702 KALELYEDIKSI-----KL-RPT-VSTMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHC
Confidence 888888876543 11 344 347888888888889998888888877543 12344 34666677788888
Q ss_pred CCHhHHHHHHHHHHHhh
Q 004812 698 GRVRSRKAQSLETLLDA 714 (729)
Q Consensus 698 g~~~~A~~~~l~~al~~ 714 (729)
|++++|. ..+..+++.
T Consensus 768 G~le~A~-~l~~~M~k~ 783 (1060)
T PLN03218 768 DDADVGL-DLLSQAKED 783 (1060)
T ss_pred CCHHHHH-HHHHHHHHc
Confidence 8888888 888887664
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=7e-19 Score=185.27 Aligned_cols=392 Identities=16% Similarity=0.139 Sum_probs=291.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004812 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (729)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (729)
..+...|...+..|++++|..++..+++.. +.+ ..+|+.||.+|..+|+.+++...+-.|-.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------- 202 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRN----PIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------- 202 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccc----hhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence 345567778888899999999999999886 333 335999999999999999999999888877
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004812 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (729)
+|.....|..++....++|++.+|.-+|.+|+...|.+. ......+.+|.+.|++..|...|.++++.....
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 677779999999999999999999999999999987763 457788999999999999999999887754311
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR--- 502 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--- 502 (729)
+...........+..+...++-+.|++.++.++.... .......+..++.++....+++.|.........
T Consensus 275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 1112223334457778888888999999999888422 233344566889999999999999888776655
Q ss_pred -------------------HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 004812 503 -------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (729)
Q Consensus 503 -------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (729)
++.- +......+..+...++.+....++..+++..+..--. .........+..
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------~~~~d~~dL~~d 419 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------VWVSDDVDLYLD 419 (895)
T ss_pred CCChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------CChhhhHHHHHH
Confidence 1111 0111112222355666666666666666655432211 112344678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
++.+|...|++.+|+.+|..+... .....+.+|..+|.||..+|.+++|+++|++++.. .|+..+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 999999999999999999887653 12234679999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE-EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+...|+.+|.++|+.++|.+.+++...--. ..-+...+...........+|...|+.++-+ .....++.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~ 554 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVD 554 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 999999999999999999988887441000 0000112334556788899999999999876 55554444
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.5e-18 Score=191.33 Aligned_cols=418 Identities=11% Similarity=-0.043 Sum_probs=306.3
Q ss_pred CcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004812 193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (729)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (729)
.+-....+|++..|++.+.++...+|.....+..++..+...|+ +++|+.++++++. +.+.....+..+|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~---------p~n~~~~~llalA 109 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS---------SMNISSRGLASAA 109 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc---------CCCCCHHHHHHHH
Confidence 34455678888888889999999999986555588888888887 8999999999881 2222344566668
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004812 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (729)
.+|...|+|++|+++|+++++.. ++.+. ++..++.++...++.++|+..+++++.. +|.....
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~~ 172 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQNY 172 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHHH
Confidence 89999999999999999999886 44433 3667899999999999999999999887 5654333
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHH----------------------
Q 004812 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA---------------------- 410 (729)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~---------------------- 410 (729)
..++.++...++..+|+..++++++..|.... .+..+..+....|-...
T Consensus 173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 55566666677887799999999998876542 12222222222222222
Q ss_pred --------------------------HHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 411 --------------------------ALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 411 --------------------------A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
|+..++..+......+ ..+....+....-.++...|++.+++..|+.....
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-- 321 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-- 321 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc--
Confidence 2222222221111111 12233445556666777888999998888866543
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004812 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
..+.-..+....|..|...+++++|+.+|..++.-..... ..+........|...|...+++++|..++++.
T Consensus 322 -----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 322 -----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred -----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1233355778899999999999999999999976532110 01112333467788899999999999999999
Q ss_pred HHHHHh-C-------CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004812 544 LKIYND-A-------PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (729)
Q Consensus 544 l~~~~~-~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (729)
....|. . ....+........++.++...|++.+|++.+++.+... +....++..+|.++..+|.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL 465 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence 875441 0 11234556778889999999999999999999987752 2346788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+.+|...++.++.+ +|+...+...+|.++..+|++.+|......+++..
T Consensus 466 p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 466 PRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999888 89999999999999999999999999999998874
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.7e-19 Score=177.23 Aligned_cols=418 Identities=17% Similarity=0.164 Sum_probs=296.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHHh-----c-CCC----CCHhHHHHHHHHHHHHHHcCChHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAK------SFEIG-----A-NGK----PSLELVMCLHVIAAIYCSLGQYNE 283 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~------~~~~~-----~-~~~----~~~~~~~~~~~la~~~~~~g~~~~ 283 (729)
.....+..+.++....+ |++|+....++-. .+++. . +.. +..-....++..|.+|..+.++++
T Consensus 81 d~~cryL~~~~l~~lk~-~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 81 DIACRYLAAKCLVKLKE-WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence 34455566666777665 7777666553200 00010 0 000 011123345667999999999999
Q ss_pred HHHHHHHhcccchhhccccchHHHHHHHHHHH-HHHHHcCCHHHH------HHHHHHHHHHHH-HHh-------CC----
Q 004812 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLG-DTYAMLGQLENS------LMCYTTGLEVQK-QVL-------GE---- 344 (729)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A------~~~~~~al~~~~-~~~-------~~---- 344 (729)
|...|.+|+.........-.. .+..+...+ ..+......+-| .+..+...++.. +.. .+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~--lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEK--LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHH--HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 999999999875322111110 011111111 111111111111 111111111100 000 00
Q ss_pred -CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004812 345 -TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (729)
Q Consensus 345 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 423 (729)
.-..........+..++..++|.+..+.+...++..|-.... .-..+| ++...|+..+-...-.+..
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~-------~~~~ia-~l~el~~~n~Lf~lsh~LV---- 305 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC-------LPLHIA-CLYELGKSNKLFLLSHKLV---- 305 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch-------HHHHHH-HHHHhcccchHHHHHHHHH----
Confidence 012345667778899999999999999999999988766432 234455 6667776554443333222
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
...|..+..|+.+|..|...|++.+|.++|-++..+ ++..+.+|..+|..+...|..++|+..|..|-++
T Consensus 306 --~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 306 --DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred --HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 346777788999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
+... .. -...+|.-|...+++.-|..+|.+|+.+.|..+ .++..+|.+.+..+.|.+|..+|+.
T Consensus 376 ~~G~----hl-----P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 376 MPGC----HL-----PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred ccCC----cc-----hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHH
Confidence 6543 23 255688999999999999999999999998773 6778899999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004812 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
++...+....... .....+.+||.+|.+++.+++|+.+|++++.+ .|....++..+|.+|..+|+++.|++
T Consensus 440 ~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 440 ALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9988777766655 45678999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004812 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 664 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 695 (729)
+|.+++.+ .|+...+-..|+.+..
T Consensus 511 ~fhKaL~l--------~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 511 HFHKALAL--------KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHhc--------CCccHHHHHHHHHHHH
Confidence 99999987 4666555555554443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.1e-18 Score=183.78 Aligned_cols=353 Identities=14% Similarity=0.100 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004812 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
+..++..|+..+..|++++|+..+.+++.. +|....+|+.||.+|.++|+.+++...+-.|-.+.|+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence 455788899999999999999999999998 799999999999999999999999999988877776654
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
..|..++.....+|++.+|.-+|.+|++. .|......+..+.+|.++|+...|...|.+++.+....
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 35899999999999999999999999864 45556778889999999999999999999999883100
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--
Q 004812 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK-- 545 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 545 (729)
+...........+..+...++-+.|++.++.++...... .....++.++.++....+++.|.........
T Consensus 275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 011223334455778888888899999999999843221 1233466788899999999999888776655
Q ss_pred --------------------HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 004812 546 --------------------IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (729)
Q Consensus 546 --------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (729)
+++-..+....+..+...++.+..+.++..+++..+..--.. .+......+..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d 419 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD 419 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence 111111111222234566677777777777777666432221 12335678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004812 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 685 (729)
++.++...|++.+|+.+|..+...- -.....+|+.+|.||..+|.+++|+++|++++.+ .|++.+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 9999999999999999999987641 1233568999999999999999999999999987 699999
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 686 EKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
+...|+.++..+|+.++|. +.++....-+
T Consensus 485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D 513 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKAL-ETLEQIINPD 513 (895)
T ss_pred hhhhHHHHHHhcCCHHHHH-HHHhcccCCC
Confidence 9999999999999999999 9998877444
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=1.9e-17 Score=189.59 Aligned_cols=373 Identities=16% Similarity=0.149 Sum_probs=287.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004812 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
.+...+...|. ..+|+.++.... .++ ...|..+-..|...|++++|..+|+++.+.. ..
T Consensus 411 ~li~~~~~~g~-~~eAl~lf~~M~---------~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~--- 469 (1060)
T PLN03218 411 KFFKACKKQRA-VKEAFRFAKLIR---------NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LK--- 469 (1060)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHcC---------CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CC---
Confidence 34445566675 777776654332 132 4567788889999999999999999987652 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
....+|..+...|.+.|++++|..+|+++.... -.| ...+|..+...|.+.|++++|+.+|.++....-.
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~--- 539 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK--- 539 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC---
Confidence 123358889999999999999999999987641 123 4578899999999999999999999987654211
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
++ ..+|..+...|.+.|++++|.+.|.+.... ..+..|+ ..+|..+...|.+.|++++|.+.|+.+.+.
T Consensus 540 PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~---- 608 (1060)
T PLN03218 540 PD----RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY---- 608 (1060)
T ss_pred CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----
Confidence 11 357899999999999999999999877532 1122333 357788889999999999999999988765
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
+.+....+|..+...|.+.|++++|+.+|.+..+. +..+ + ..+|..+...|...|++++|.+++.++.+
T Consensus 609 ---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~P-D-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 609 ---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKP-D-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred ---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 23445678999999999999999999999998765 2112 2 45788899999999999999999999875
Q ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (729)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (729)
. +..+. ..+|..+...|.+.|++++|..+|+++... +. .+ ...+|+.+...|.+.|++++|+++|++
T Consensus 678 ~-----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~P--dvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 678 Q-----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RP--TVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred c-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CC--CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 22222 357889999999999999999999987542 11 12 246799999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.... +. .|+. .+|..+...+...|++++|..++.++++.
T Consensus 745 M~~~-----Gi-~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 745 MKRL-----GL-CPNT-ITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHc-----CC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 8654 21 3544 47778889999999999999999998764
No 42
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.2e-17 Score=154.79 Aligned_cols=424 Identities=12% Similarity=0.036 Sum_probs=304.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-----------CCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGA-----------NGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
.....+..+....+.... |..|...|..++..-.... ...+.+.........+.||...++-+.|+..
T Consensus 41 ~~yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~ 119 (564)
T KOG1174|consen 41 VEYQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIET 119 (564)
T ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHH
Confidence 344455555555555543 6677777776665432110 1112244455667789999999999999998
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------------------------
Q 004812 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-------------------------- 341 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------- 341 (729)
+....... ..|. .-..++..+..-++..++.-.|...+..+.-.
T Consensus 120 l~~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~ 189 (564)
T KOG1174|consen 120 LLQVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAAT 189 (564)
T ss_pred HhcCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhee
Confidence 87765442 1221 24456666666555555554444443321110
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004812 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
..+..|........+|.++....-+.-+..++-+-....+.+ ...+..+|.+++..|++.+|+..|+++..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 001111111122233444333333344444444434443333 345788999999999999999999988653
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501 (729)
Q Consensus 422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (729)
+|......-..|.++...|++++-.......+.+ ....+.-|+.-+..++...++..|+.+-++++
T Consensus 262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 6667777778889999999999887777777666 33455667777888899999999999999999
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
+. .+....++...|.++..+++.++|+-.|+.|..+.|-. ..+|..|-.+|+..|.+.+|....
T Consensus 328 ~~---------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 328 DS---------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred cc---------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHH
Confidence 98 44456789999999999999999999999999988655 478899999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004812 582 KNAISKLRAIGERKSAFFGVALNQMG-LACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
..++..+.. .+.++..+| .++.. -.--++|..++++++.+ .|....+...+|.++...|+++
T Consensus 392 n~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 392 NWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccc
Confidence 988887643 345666665 44432 23458999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 660 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++.++++++..+ |+ ...+..||.++...+.+.+|. .+|..|+.+||+
T Consensus 456 D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 456 DIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK 503 (564)
T ss_pred hHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence 9999999999864 33 457889999999999999999 999999999998
No 43
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=3.9e-18 Score=193.55 Aligned_cols=369 Identities=15% Similarity=0.071 Sum_probs=285.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...+..+...|.+.|+ +++|...|++.. .++ ..+|..+...|.+.|++++|+.+|+++++....
T Consensus 158 ~~~~n~Li~~y~k~g~-~~~A~~lf~~m~---------~~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--- 221 (697)
T PLN03081 158 QYMMNRVLLMHVKCGM-LIDARRLFDEMP---------ERN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSD--- 221 (697)
T ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHhcCC---------CCC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---
Confidence 5567777888999997 877777776542 122 456888999999999999999999998754211
Q ss_pred ccch------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004812 301 QEHA------------------------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (729)
Q Consensus 301 ~~~~------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (729)
++.. .....++..|...|.+.|++++|...|++.. +...
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~ 290 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTT 290 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCCh
Confidence 1100 0011235667888999999999999987642 2345
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
.+|..+...|.+.|++++|+.+|++.....-. ++ ..++..+...+...|++++|.+.+..+++. +. +.
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~-~~ 358 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---ID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GF-PL 358 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CC----HHHHHHHHHHHHhccchHHHHHHHHHHHHh----CC-CC
Confidence 78999999999999999999999988653211 11 246889999999999999999999877642 22 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
...++..+...|.+.|++++|...|++..+ + ...+|..+...|.+.|+.++|+++|++..+. +
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g 421 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------G 421 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence 345778899999999999999999987642 2 3468999999999999999999999998865 2
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
. .|+ ..++..+...+...|..++|..+|+...+... ..+. ...|..+..+|.+.|++++|.+.++++
T Consensus 422 ~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g----~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~------ 488 (697)
T PLN03081 422 V-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHR----IKPR-AMHYACMIELLGREGLLDEAYAMIRRA------ 488 (697)
T ss_pred C-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC----CCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC------
Confidence 2 122 45688888899999999999999998876432 2222 246788999999999999999887653
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.. .+ ...+|..+...+...|+++.|...+++.+.+ .|+....|..|+.+|...|++++|.+.++...+
T Consensus 489 -~~-~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 489 -PF-KP--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred -CC-CC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 12 2457899999999999999999999998877 677777899999999999999999999998764
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=3.9e-17 Score=153.27 Aligned_cols=333 Identities=15% Similarity=0.118 Sum_probs=242.6
Q ss_pred CCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (729)
Q Consensus 260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 339 (729)
.+|..+.-...+|..++..|++..|+..|..|++.. + ....+++..|.+|..+|+-.-|+..+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----P----NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----c----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 335556667889999999999999999999999886 2 23446899999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004812 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 419 (729)
.|+...+....|.++.++|++++|..-|..++...+..... -.+...++.+ .
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~----------~------- 153 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALI----------Q------- 153 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhH----------H-------
Confidence 79999999999999999999999999999999877655321 0111111110 0
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
....+......+...|+...|+.+....+++ .|..+..+...+.+|...|+...|+..++.
T Consensus 154 -----------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 154 -----------EHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred -----------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0122233445566678888888888888887 677888888888888888888888888888
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH---HH--HHHHHHHHHHcCCH
Q 004812 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA---GI--EAQMGVMYYMLGNY 574 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~--~~~la~~~~~~g~~ 574 (729)
+-++. .+....++.++.+++..|+.+.++...++++++.|++..-.+..- .+ ...-+......++|
T Consensus 215 askLs---------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 215 ASKLS---------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHhcc---------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 77772 223556778888888888888888888888887665421111000 00 00112233455666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (729)
.+++...++.++.- +............+..|+..-+++.+|+....+++++ +|+.+.++...|.+|..
T Consensus 286 t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 286 TECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhh
Confidence 66666666665531 1112222345666778888889999999999999988 89999999999999999
Q ss_pred cCChHHHHHHHHHHHHH
Q 004812 655 IGRLDDAIEILEFVVGI 671 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~ 671 (729)
...|+.|+.-|++|.++
T Consensus 354 dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99999999999999876
No 45
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=2.2e-17 Score=192.06 Aligned_cols=150 Identities=9% Similarity=-0.013 Sum_probs=74.3
Q ss_pred cccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004812 196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
.+.+.|+...|...+......+ ...|..+...+.+.|+ +++|+++|.+....- ..|+ ...+..+...+
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g-----~~Pd---~~ty~~ll~a~ 298 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGE-CLEGLELFFTMRELS-----VDPD---LMTITSVISAC 298 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCC-HHHHHHHHHHHHHcC-----CCCC---hhHHHHHHHHH
Confidence 3445555555555555544332 3467777788889997 999999988875421 1111 22233344444
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004812 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
...|+.+.|.+++..+++... . ....++..|...|.+.|++++|...|++... | ...+|..
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~---~-----~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~s~n~ 359 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGF---A-----VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAVSWTA 359 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCC---c-----cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CeeeHHH
Confidence 445555555555554443210 0 0122344445555555555555554444210 1 1223444
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 004812 356 LAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~a 376 (729)
+...|.+.|++++|+.+|++.
T Consensus 360 li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 444455555555555555444
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.5e-17 Score=162.74 Aligned_cols=415 Identities=17% Similarity=0.179 Sum_probs=279.9
Q ss_pred cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004812 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (729)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (729)
...++|..++..+.+....+|.+...+-.+..++...|+ |++|+.-..+.+++. |+++..|..+|..++.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKGAALFG 82 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhHHHHHh
Confidence 445677778888888888899999999999999999998 999999888888763 6788999999999999
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHH
Q 004812 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCYTTGLE 336 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~ 336 (729)
+|+|++|+..|.+.|+.. +... ..+..|+.++...- ++-.....|...++
T Consensus 83 lg~~~eA~~ay~~GL~~d-----~~n~----~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-----PSNK----QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred cccHHHHHHHHHHHhhcC-----CchH----HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999886 3322 12455555551110 01111122233333
Q ss_pred HHHHHhCCCCchHHHHHHH-------HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC------------C------CHHH
Q 004812 337 VQKQVLGETDPRVGETCRY-------LAEAHVQALQFSEAQKFCQMALDIHKDNGSP------------A------SLEE 391 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~------~~~~ 391 (729)
..++ .|.....+.. ++.+.. .+.. ..+.......+....+ + ....
T Consensus 154 ~~~~-----~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 154 IIQK-----NPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK 223 (539)
T ss_pred Hhhc-----CcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence 2222 1111111110 111000 0000 0000000000000000 0 0113
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+.....+|.......++..|+++|.+++.+. .....+.+.+.+|+..|.+.+.+..+..+++....... +..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~k 295 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYK 295 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHH
Confidence 5567789999999999999999999998753 33456678899999999999999988888776433211 122
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004812 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
..+.++..+|..|...++++.|+.+|++++.-.+. ..+.......++++...+...-+.+..
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~- 357 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK- 357 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH-
Confidence 35566667888999999999999999998877433 223333444455554444433332222
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
+.-...-|..++..|+|..|+.+|.+|+..- +..+..|.+.|.||..+|.+..|+...+.++++
T Consensus 358 ------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-- 421 (539)
T KOG0548|consen 358 ------AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-- 421 (539)
T ss_pred ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 3344456888888899999999998887752 335678888899999999999999888888888
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
+|.....|..-|.++..+.+|++|++.|+++++. +|....+...+.+++..+
T Consensus 422 ------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 ------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence 8888888888899998889999999988888875 577777777777776653
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=8.5e-16 Score=181.36 Aligned_cols=420 Identities=15% Similarity=0.065 Sum_probs=304.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...+...+..+...|+ +.+|+.++..+-. .......+...+..+...|++..+..++..+ .... .
T Consensus 341 ~~lh~raa~~~~~~g~-~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~---~ 405 (903)
T PRK04841 341 PELHRAAAEAWLAQGF-PSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEV---L 405 (903)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHH---H
Confidence 3444555555666665 7777766554421 1334555666788888899998877777554 1110 1
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
..++. .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++..
T Consensus 406 ~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 406 LENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred hcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11121 2456788888999999999999988766432110011 123455667888999999999999999999985
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (729)
.+.. .....+.++..+|.++...|++++|...+.+++......+.......++..+|.++...|++++|..++++++
T Consensus 482 ~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 482 LPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred CCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3322 2233455678899999999999999999999998887776666667788899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004812 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (729)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (729)
.+.....+...+.....+..+|.++...|++++|...+.+++.+..... ......++..++.++...|++++|...
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~ 634 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARRY 634 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988765433444455677889999999999999999999999876531 223456778899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004812 540 LQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (729)
Q Consensus 540 ~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (729)
+.++..+.... +... ............+...|+.+.|..++...... ...........+..++.++...|++++
T Consensus 635 l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 635 LNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 99999886654 2111 11111111234556688999988887664431 011111123345678999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
|..++++++........ ......++..+|.++...|+.++|...+.+++++..
T Consensus 710 A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 710 AEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999998665433 346677889999999999999999999999999864
No 48
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.79 E-value=8.2e-15 Score=173.03 Aligned_cols=423 Identities=15% Similarity=0.036 Sum_probs=302.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004812 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
....+...+..+...|++.+|+.++..+-.. ..........+..+...|++..+..++..+-... .
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~ 405 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----L 405 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----H
Confidence 3455666777888899999998877665322 1233456667888888999888777665431110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004812 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
..+|. .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus 406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11233 34567778889999999999999987765432211 112234556678899999999999999999988642
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
.. ........+...+|.++...|++++|..++++++........ ......++..+|.++...|++++|..++++++.
T Consensus 483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 222234556788999999999999999999999998876542 233456778999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
+..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..++.++...|++++|...+.
T Consensus 560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 977642 11223334456778999999999999999999999987754 2 22345567789999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004812 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
++..+....... ..............+...|+.+.|..++....... .+. .......+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~-~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FAN-NHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Ccc-chhHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876543211 11111111112344556789999988876654310 010 1112223568999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 663 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+++++...+.. + .......++..+|.++...|+.++|. ..+.+++++...
T Consensus 712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~ 763 (903)
T PRK04841 712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence 9999999886543 2 23456778889999999999999999 999999998765
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=154.98 Aligned_cols=245 Identities=19% Similarity=0.188 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
+.-..+|.||+++|.+.+|.+.++.+++. ...+..+..|+.+|.+..+...|+..|.+.++.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------- 285 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------- 285 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---------
Confidence 34467999999999999999999999985 345678889999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.|..+..+..+++++..++++++|.++|+.+++..+.+ .++...+|.-|+..++.+-|+.+|++.+++-
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG---- 354 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN-------VEAIACIAVGYFYDNNPEMALRYYRRILQMG---- 354 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-------ceeeeeeeeccccCCChHHHHHHHHHHHHhc----
Confidence 34456778899999999999999999999999887655 3444567888999999999999999999862
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
...+..+.++|.|++..++++-++..|++|+....+ .....++|++||.+....|++.-|...|+-++.
T Consensus 355 ----~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-- 423 (478)
T KOG1129|consen 355 ----AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-- 423 (478)
T ss_pred ----CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhc--
Confidence 224578999999999999999999999999988543 345667999999999999999999999999984
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCccc
Q 004812 673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIE 724 (729)
Q Consensus 673 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~ 724 (729)
.+++...++.+||.+-.+.|+.++|. ..|..+-...|+ ....+++
T Consensus 424 ------~d~~h~ealnNLavL~~r~G~i~~Ar-sll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 424 ------SDAQHGEALNNLAVLAARSGDILGAR-SLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred ------cCcchHHHHHhHHHHHhhcCchHHHH-HHHHHhhhhCcccccccccee
Confidence 47899999999999999999999999 999999999999 4444443
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=1e-14 Score=148.21 Aligned_cols=427 Identities=14% Similarity=0.036 Sum_probs=321.0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004812 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (729)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (729)
.+...-|.....|+.+++.- .|+.|...+.+|-+.++.. +.+ |..-+.+--..|+.+....+..++
T Consensus 401 rAveccp~s~dLwlAlarLe-----tYenAkkvLNkaRe~iptd------~~I---Witaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 401 RAVECCPQSMDLWLALARLE-----TYENAKKVLNKAREIIPTD------REI---WITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHhccchHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCC------hhH---HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33445577777777776643 3777777777766654321 222 333344444455555554444444
Q ss_pred cccchhh----------------------------------ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 292 IEIPVIE----------------------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 292 l~~~~~~----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
+.-.... .|.+. ......|..-+..+...+.++-|...|..+++.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe-ed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE-EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc-chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 3211100 00111 012234777788888899999999999999998
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004812 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
.|..-..|...+.+-..-|..+.-..++++++...|+.. ..|...+..++..|+...|...+.+
T Consensus 546 --------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae--------~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 546 --------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE--------ILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred --------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch--------hHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 577777888888888888999999999999999887653 3477778888999999999999998
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
++.. .|..-.+|..--.+.....+++.|..+|.++... .....+|+.-+.+...+++.++|+.++
T Consensus 610 af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 610 AFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8753 3445566776777888899999999999998875 445688889999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004812 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
+++++.+ |.....|..+|+++..+++.+.|...|...++.+|.. ..+|..++.+-.+.|+.-.|
T Consensus 675 Ee~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 675 EEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHHHHHHhcchhhH
Confidence 9999994 4457789999999999999999999999998888766 36788899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------cCCC------------
Q 004812 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE--------CGPY------------ 637 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~------------ 637 (729)
...++++.-. .+.....|......-++.|+.+.|..+..+|++-+... .-..
T Consensus 739 R~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 739 RSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 9999987643 12234667777788888999999999999998764321 0000
Q ss_pred --ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 638 --HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 638 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
......++..+|.++....++++|.++|.+++.+ +|++.+++..+-..+...|.-++-. +.|.+.....
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~E 881 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETAE 881 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhccC
Confidence 1122346778899999999999999999999987 6888899988889999999988888 9999998888
Q ss_pred cc
Q 004812 716 SR 717 (729)
Q Consensus 716 p~ 717 (729)
|.
T Consensus 882 P~ 883 (913)
T KOG0495|consen 882 PT 883 (913)
T ss_pred CC
Confidence 86
No 51
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=4.7e-16 Score=181.08 Aligned_cols=429 Identities=14% Similarity=0.039 Sum_probs=278.5
Q ss_pred CcccccccccccccCcccccCC--CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004812 193 GATPMKKRKGKLHKGQDVSEAG--LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (729)
Q Consensus 193 ~~~~~~~~~~~~~a~~~~~~~~--~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (729)
....+.+.|+..++.+.+.+.. ...|+. ..+..+...+...|+ .+.|.+.+..+++.- -.++ ...+..
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g-----~~~d---~~~~n~ 328 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDL-MTITSVISACELLGD-ERLGREMHGYVVKTG-----FAVD---VSVCNS 328 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC-hHHHHHHHHHHHHhC-----Cccc---hHHHHH
Confidence 3344455566555554443321 234543 344555566777886 899998888876541 1222 456788
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004812 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (729)
+...|.+.|++++|..+|++...-. ..+|..+...|.+.|++++|+.+|++..... -.|+.
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~~d------------~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~- 389 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMETKD------------AVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE- 389 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC------------eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc-
Confidence 8889999999999999998865321 1248888899999999999999999875541 12333
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
.++..+-..+...|++++|.+++..+.+...... ..++..+...|.+.|++++|.+.|++... +
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------~- 453 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCIDKALEVFHNIPE--------K- 453 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------C-
Confidence 3444555567778888888888877766432211 24567777888888888888888765421 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------------------------------hhHHHHHHH
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------------------------------PAVASVFVR 479 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~ 479 (729)
...+|..+...|...|++++|+..|++.+.. ..++. .....++..
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 1235667777777888888888888776531 11110 011122234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
|...|.+.|++++|...|+.. .. ...+|+.+...|...|+.++|+.+|++..+. +..+. ..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~ 590 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPD-EV 590 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-cc
Confidence 446677777777777666653 11 1456777788888888888888888876643 11111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
++..+-..+.+.|++++|..+|+.+.+.. +..+ ....|..+..++.+.|++++|.+++++.- + .|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~--------~p 655 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKY----SITP--NLKHYACVVDLLGRAGKLTEAYNFINKMP-I--------TP 655 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHh----CCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C--------CC
Confidence 34455566778888888888887765321 1111 13567778888888888888888877641 1 34
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+ ..+|..|-..+...|+.+.|....++++++ .|+....+..|+.+|...|++++|. +..+...+.
T Consensus 656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~-~vr~~M~~~ 720 (857)
T PLN03077 656 D-PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVA-RVRKTMREN 720 (857)
T ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHH-HHHHHHHHc
Confidence 4 335666666777778888887777777765 5777778888889999999999988 777666443
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=155.35 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=234.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004812 359 AHVQALQFSEAQKFCQMALDIHKDNG--SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
+++...+...|-..+...+++..... ...-......-..+|.+|.++|-+.+|...++.++.. ......+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfl 260 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFL 260 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHH
Confidence 34445566666666665555443222 1112222344567999999999999999999988752 23346778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004812 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (729)
.|+.+|.+..+...|+..|.+.++. .|.....+..+|.++..++++++|.++|+.+++. ++..
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~n 323 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPIN 323 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCcc
Confidence 8999999999999999999999997 6888899999999999999999999999999998 4555
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
+.+...+|.-|+.-++.+-|+.+|++.+++--.. ...++++|.+++..++++-++..|++|+....+ +
T Consensus 324 vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~ 391 (478)
T KOG1129|consen 324 VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----P 391 (478)
T ss_pred ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----c
Confidence 6777778889999999999999999999986555 478899999999999999999999999987542 3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
...+.+|+++|.+....|++.-|..+|+-++.. +++...++.+||.+-.+.|+.++|..++..+-..
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~----- 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV----- 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence 346789999999999999999999999999988 8999999999999999999999999999998876
Q ss_pred CCCChhHHHHHHHHHHH
Q 004812 677 GTANPDVDDEKRRLAEL 693 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~ 693 (729)
.|+..+..++|+.+
T Consensus 459 ---~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 ---MPDMAEVTTNLQFM 472 (478)
T ss_pred ---CccccccccceeEE
Confidence 57777777766544
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=1.7e-15 Score=142.33 Aligned_cols=339 Identities=14% Similarity=0.090 Sum_probs=242.6
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004812 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
..+|....-.+.+|..++..|+ +..|+..|..|++. +|....+++..|.+|..+|+-.-|+..+.+++++
T Consensus 32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~---------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEG---------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcC---------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 4567778889999999999998 99999999999874 3667888999999999999999999999999998
Q ss_pred chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHHHHhcCHHHHHH
Q 004812 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR---VGETCRYLAEAHVQALQFSEAQK 371 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~ 371 (729)
. + ....+....|.++.++|.+++|...|.++++. +|. ..++...++.+-.
T Consensus 102 K-----p----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--------~~s~~~~~eaqskl~~~~e---------- 154 (504)
T KOG0624|consen 102 K-----P----DFMAARIQRGVVLLKQGELEQAEADFDQVLQH--------EPSNGLVLEAQSKLALIQE---------- 154 (504)
T ss_pred C-----c----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--------CCCcchhHHHHHHHHhHHH----------
Confidence 6 2 23446888999999999999999999999887 342 2223222222110
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004812 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (729)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (729)
. ..+......+...|++..|+++....+.+ .+..+..+...+.||...|+...|
T Consensus 155 ~--------------------~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 155 H--------------------WVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred H--------------------HHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHH
Confidence 0 11223333445567777777777666543 455566677777777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--------
Q 004812 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------- 523 (729)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------- 523 (729)
+.-++.+-++ ..+....++.++.+++..|+.+.++...++++++ ..++..-...|-.|
T Consensus 209 I~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 209 IHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------CcchhhHHHHHHHHHHHHHHHH
Confidence 7777777666 4556677777777777777777777777777776 22232222222222
Q ss_pred -HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004812 524 -SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (729)
Q Consensus 524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (729)
+.-....++|.++++..++.++..|.. ..........+..|+...|++-+|+....+++++. +..+.+
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--------~~dv~~ 343 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--------PDDVQV 343 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------chHHHH
Confidence 223345667777777777777655442 12223344567788999999999999999998862 335688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
+...|.+|+....|+.|+.-|++|.+. ++....+...+-
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~--------n~sn~~~reGle 382 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL--------NESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc--------CcccHHHHHHHH
Confidence 999999999999999999999999998 565555554443
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.77 E-value=1.1e-14 Score=148.37 Aligned_cols=421 Identities=14% Similarity=0.103 Sum_probs=294.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
-..++..+.-++..++ |.+.+...+..++-+ |+....+...|..+..+|+-++|..+.+.++..+
T Consensus 7 E~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----- 71 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQ-YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----- 71 (700)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccC-----
Confidence 3467788888888887 888888877777632 5557778889999999999999999999999864
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
.. .-.+|..+|.++....+|++|+.+|+.|+.+ .+++..++..++.+..+.++++-....-.+.++..
T Consensus 72 ~~----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 72 LK----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred cc----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 22 1236999999999999999999999999999 78999999999999999999999999888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND--QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
+... ..|...+..+...|++..|....+.......... .......+......+....|.+++|++.+..-
T Consensus 140 ~~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 140 PSQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred hhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 7654 4588899999999999999998887765443111 12234455556677788889888888776654
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH-
Q 004812 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI- 537 (729)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 537 (729)
-.- ..+........|.++..++++++|...|...+.. .|+....+..+-.++..-.+--+++
T Consensus 212 e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---------nPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 212 EKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---------NPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred hhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 332 2333455667799999999999999999999887 4444555555544443222222233
Q ss_pred HHHHHHHHHHHhCCCC---------CCcHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHh-CC-
Q 004812 538 KLLQKALKIYNDAPGQ---------QSTVAGIEAQMGVMYYML-------------GNYSDSYDSFKNAISKLRAI-GE- 593 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~---------~~~~~~~~~~la~~~~~~-------------g~~~~A~~~~~~al~~~~~~-~~- 593 (729)
..|...-+.++...-. .......+...-.-.+.. .+..+ ..++++.+..+... .+
T Consensus 275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccc
Confidence 3333322222221000 000000000000000011 11111 12444444333322 11
Q ss_pred -----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004812 594 -----------RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 594 -----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
..+....++++.++.-+...|+++.|..++..|+.. .|...+.|..-|+++...|++++|.
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHH
Confidence 135556788889999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004812 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 663 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.++.++.++- .++ ..+-..-|.-..+..+.++|. +.+...
T Consensus 426 ~~l~ea~elD-------~aD-R~INsKcAKYmLrAn~i~eA~-~~~skF 465 (700)
T KOG1156|consen 426 AWLDEAQELD-------TAD-RAINSKCAKYMLRANEIEEAE-EVLSKF 465 (700)
T ss_pred HHHHHHHhcc-------chh-HHHHHHHHHHHHHccccHHHH-HHHHHh
Confidence 9999998762 222 222224677777788888887 655443
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=1.5e-15 Score=154.09 Aligned_cols=374 Identities=16% Similarity=0.077 Sum_probs=254.4
Q ss_pred cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004812 212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (729)
Q Consensus 212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (729)
..+....+.-..|+.-+..+...+- ++-|+..|..||+.+. ..-..|...+..--.-|..+.-..+|+++
T Consensus 507 gigvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp---------~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 507 GIGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFP---------CKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hhccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444555566667777777777765 7777777777777652 22333444444455567777777777777
Q ss_pred cccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004812 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (729)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (729)
+... +..+. .|+..+..+...|+...|...+.++++. +|...++|+.--.+.+...+++.|..
T Consensus 577 v~~~-----pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 577 VEQC-----PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred HHhC-----Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHH
Confidence 7664 22221 3666677777777777777777777777 56666777776777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004812 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (729)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (729)
+|.++....+. ..+|..-+.+...+++.++|+.+++.+++. .|.....|..+|.++..+++.+.|
T Consensus 640 llakar~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 640 LLAKARSISGT---------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred HHHHHhccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHH
Confidence 77777664432 234666677777777777777777777653 455566777778888777777777
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc
Q 004812 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (729)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (729)
...|...++. .|.....|..|+.+-...|+.-.|...++++.-. .|.....|.....+-.+.|
T Consensus 705 R~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 705 REAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcC
Confidence 7777777776 5777777777777777777777777777777554 3344555666666777777
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 004812 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV 611 (729)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 611 (729)
+.+.|.....+|++-+|.. | .+|..-..+.-.-++-..++. |+ ++... ...++..+|.+++
T Consensus 768 n~~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~D----AL---kkce~-----dphVllaia~lfw 828 (913)
T KOG0495|consen 768 NKEQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSID----AL---KKCEH-----DPHVLLAIAKLFW 828 (913)
T ss_pred CHHHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHH----HH---HhccC-----CchhHHHHHHHHH
Confidence 7788877777777777655 1 122111111111122222222 22 22211 2357788899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
...++++|.++|.+++++ +|+..++|..+-..+...|.-++-.+.|.++...
T Consensus 829 ~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 999999999999999999 8999999999999999999988888888888753
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=4e-15 Score=154.63 Aligned_cols=438 Identities=17% Similarity=0.123 Sum_probs=320.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch
Q 004812 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA 304 (729)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 304 (729)
......+.-+. |.++++-+.-..+...+... -. +.+..|..+.......|+|+.+.+.|++++...
T Consensus 288 lli~es~i~Re-~~~d~ilslm~~~~k~r~~~-~q---nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--------- 353 (799)
T KOG4162|consen 288 LLIEESLIPRE-NIEDAILSLMLLLRKLRLKK-FQ---NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--------- 353 (799)
T ss_pred HHHHhhccccc-cHHHHHHHHHHHHHHHHHhh-hc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---------
Confidence 33334444444 57888777655555443321 11 235567778888899999999999999998764
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004812 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET-CRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
......|+.++.+|...|.-..|+...+..+...+ .|..... ++.-..++...+.+++++.+..+++......
T Consensus 354 ~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~ 427 (799)
T KOG4162|consen 354 FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ 427 (799)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh
Confidence 22344599999999999999999999998887732 1433334 4444455667889999999999999966333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 384 GSPASLEEAADRRLMGLICETKG-----------DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 384 ~~~~~~~~a~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
. ....+.++..+|.+|..+- ...++++.++++++. ++....+.+.++.-|..+++.+.|.
T Consensus 428 ~---~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~------d~~dp~~if~lalq~A~~R~l~sAl 498 (799)
T KOG4162|consen 428 R---SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF------DPTDPLVIFYLALQYAEQRQLTSAL 498 (799)
T ss_pred h---hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHHhHHHHH
Confidence 2 2233567888888875442 245566666666542 2333367788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
.+.++++++ +....+.+|..+|.++...+++.+|+...+.+++-+... .........+-...++
T Consensus 499 ~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N---------~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 499 DYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN---------HVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh---------hhhchhhhhhhhhccc
Confidence 999999998 345668899999999999999999999999999885432 2223333445555899
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----------------C
Q 004812 533 LEQAIKLLQKALKIYNDAPGQQSTV--AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE----------------R 594 (729)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~ 594 (729)
.++|+..+...+.++...++..... .......+.+.....+..+|+..+.++..+...... +
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 9999999999999988654433211 112223344444555677777777776665442111 0
Q ss_pred C--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 595 K--SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 595 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
. .......|...+..+...++.++|..++.++-.+ .|.....|+..|.++...|++++|.+.|..++.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 0 1122346777889999999999999999999999 8999999999999999999999999999999987
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH--HHHHHHhhccc--cCCCccc
Q 004812 673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ--SLETLLDANSR--VNNDGIE 724 (729)
Q Consensus 673 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~--~l~~al~~~p~--~~~~~l~ 724 (729)
+|+...+...||.++.+.|+..-|. . .+..+++++|. ..+..+|
T Consensus 714 -------dP~hv~s~~Ala~~lle~G~~~la~-~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 714 -------DPDHVPSMTALAELLLELGSPRLAE-KRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred -------CCCCcHHHHHHHHHHHHhCCcchHH-HHHHHHHHHhhCCCCHHHHHHHH
Confidence 7888889999999999999998888 7 99999999997 5444444
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.5e-15 Score=141.88 Aligned_cols=289 Identities=12% Similarity=0.100 Sum_probs=235.4
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004812 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (729)
-+.....+..+|.+++..|++++|+..|+++.-+.+... ...-..|.++...|+++.-.......+.+.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--- 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAKV--- 296 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhhh---
Confidence 477888999999999999999999999999988876553 346667888888999988766655444321
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
...+.-|+.-+...+...++..|+.+-+++++. ++....++...|.++...++.++|+-.|+.|..+
T Consensus 297 ---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 297 ---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred ---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 122334455677788899999999999999998 7888899999999999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG-VMYYM-LGNYSDSYDSFKN 583 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~ 583 (729)
.|....+|..|..+|...|++.+|......++..++.. +.++..+| .+++. -.--++|.+++++
T Consensus 364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 55668899999999999999999999999999998876 45555554 33332 3345789999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004812 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
++.+ .+.+..+-..+|.++...|.++.++.++++++.. .++.. .+..||.++...+.+++|.+
T Consensus 430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~~-LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDVN-LHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------ccccH-HHHHHHHHHHHhhhHHHHHH
Confidence 9886 2335667788999999999999999999999998 55543 78899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 664 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
+|..|+.+ +|..-.++..|-.+-...
T Consensus 493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 493 YYYKALRQ--------DPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHhc--------CccchHHHHHHHHHHhcc
Confidence 99999987 687777776665554433
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.6e-17 Score=166.85 Aligned_cols=266 Identities=20% Similarity=0.161 Sum_probs=114.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.+|.+++..|++++|++++.+.+.... ++. ....|..+|.+....++++.|+..|++++.. ++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPD----DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---ccc----ccccccccccccccccccccccccccccccc--------cccc
Confidence 569999999999999999976654320 111 2245888999999999999999999999887 4555
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
...+..++.+ ...+++++|+.++.++.+..+.. ..+..+..++...++++++...+.++.. ....+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~ 143 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP 143 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence 5667777777 68999999999999887755322 2355677788999999999999988653 22234
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
.....+..+|.++...|++++|+..|+++++. .|....+...++.++...|+++++...+.........
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~--- 212 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD--- 212 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence 55678899999999999999999999999999 7888899999999999999999988888887777322
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|..++.+++...
T Consensus 213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 23457788999999999999999999999887665 4677899999999999999999999988754
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.74 E-value=1.3e-14 Score=137.52 Aligned_cols=345 Identities=15% Similarity=0.153 Sum_probs=276.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004812 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (729)
......|..++...+ +++|+..+.+.+.-.... ......+-.+..+...+|.|++++.+--..+..... .
T Consensus 7 k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~---~ 76 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE---L 76 (518)
T ss_pred HHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---H
Confidence 355678888999987 999999999988776444 334556677788889999999998877666655422 3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004812 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
++......++.+++..+....++.+++.+-.-.+.+- |... ..-......++.++.-++.|+++++.|+.|+++.
T Consensus 77 ~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A 152 (518)
T KOG1941|consen 77 EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA 152 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 3445567789999999999999999998877766651 1111 1233566778999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
..+.++ ..+..++..||.++....|+++|+-+..+|..+....+-. .....+++.++..+..+|+.-.|.++.+
T Consensus 153 ~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~ 230 (518)
T KOG1941|consen 153 HNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCE 230 (518)
T ss_pred hccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 888765 4445678899999999999999999999999888766522 2345678889999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHH-
Q 004812 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ- 535 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~- 535 (729)
++.++.-..+ +.+..+..+..+|.+|...|+.+.|..-|+.|+....... +......++...|.++....-..+
T Consensus 231 Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g---drmgqv~al~g~Akc~~~~r~~~k~ 305 (518)
T KOG1941|consen 231 EAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG---DRMGQVEALDGAAKCLETLRLQNKI 305 (518)
T ss_pred HHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999988876 5788889999999999999999999999999999877642 344456677778887776655555
Q ss_pred ----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 536 ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 536 ----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
|+++-.+++++.... |.......+...++.+|..+|.-++-...+.++-+..
T Consensus 306 ~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred cccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999998887 7777778888999999999998888777777766553
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2.3e-17 Score=165.66 Aligned_cols=266 Identities=23% Similarity=0.249 Sum_probs=113.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
..+|.+++..|++++|++.+.+.+... .++.....|..+|.+....++++.|+..|++++.. .+....
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence 356999999999999999996654321 13444577788999999999999999999999987 455666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
.+..++.+ ...+++++|+.+++++.+... . ...+..+..++...++++++...++++..... ..
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-------~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-------D---PRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP 143 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred cccccccc-ccccccccccccccccccccc-------c---cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence 77788888 789999999999988876521 1 23455667788999999999999999774221 11
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.-..++..+|.++.+.|++++|+.+|++++++.+ ....++..++.++...|+++++.+.+......
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------ 209 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDP--------DDPDARNALAWLLIDMGDYDEAREALKRLLKA------ 209 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence 2356788999999999999999999999999732 24567888999999999999988888887776
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.|.....+..+|.+|..+|++++|+.+|++++.. +|..+..+..+|.++...|+.++|. ..+++++..
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~ 277 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL 277 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccccc
Confidence 3444457788999999999999999999999976 6888899999999999999999999 988887753
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=4.7e-15 Score=162.68 Aligned_cols=265 Identities=14% Similarity=0.027 Sum_probs=206.8
Q ss_pred HHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHH
Q 004812 395 RRLMGLICET---KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAF 462 (729)
Q Consensus 395 ~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~ 462 (729)
++..|..+.. .+++++|+.+|++++.+ +|..+.++..+|.+|... +++++|+..+++++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l- 333 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL- 333 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-
Confidence 4444543332 24578999999999753 566677888888877643 3489999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 004812 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542 (729)
Q Consensus 463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (729)
+|....++..+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..+++
T Consensus 334 -------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 334 -------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888999999999999999999999999999999 445567899999999999999999999999
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622 (729)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 622 (729)
++++.|..+ ..+..++.+++..|++++|+..+++++... ++.....+..+|.++...|++++|...
T Consensus 398 Al~l~P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 398 CLKLDPTRA-------AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHhcCCCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999976642 233445666778999999999999987642 122345788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004812 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (729)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~ 702 (729)
+.++... .|....+...++..|...| ++|...+++.++..... +.++ ..++.+|.-.|+.+.
T Consensus 464 ~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~ 525 (553)
T PRK12370 464 TKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIA 525 (553)
T ss_pred HHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHH
Confidence 9887666 6777778889999999888 48888888876654321 1122 227888888899888
Q ss_pred HHHHHHHHHHhhcc
Q 004812 703 RKAQSLETLLDANS 716 (729)
Q Consensus 703 A~~~~l~~al~~~p 716 (729)
+. .+ +++.+.+.
T Consensus 526 ~~-~~-~~~~~~~~ 537 (553)
T PRK12370 526 EK-MW-NKFKNEDN 537 (553)
T ss_pred HH-HH-HHhhccch
Confidence 87 55 66655443
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.73 E-value=1.9e-14 Score=136.45 Aligned_cols=345 Identities=16% Similarity=0.116 Sum_probs=275.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004812 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (729)
...-|.-++...++++|+..+.+.+... ++....+..+-.+..+...+|.|++++.+--..+..+... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4445777788889999999999888763 2233456677788889999999999988776666665443 1224
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004812 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
...+++.+++..+....+|.+++.+.+..+.+........ . ......+|..+..++.++++++.|+.|+.+...+++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~-~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL-G--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc-c--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 5678899999999999999999999888877643332111 1 245677999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
......++..||.+|....++++|+-+..+|.++.+...-.+ ......+++.++..+..+|+...|.++.+++.++.-
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999987765322 234567888999999999999999999999999977
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDS 580 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~ 580 (729)
.. .+.+..+..+.-+|.+|...|+.+.|..-|++|..+.... |+.-....++...+.++....-..+ |+++
T Consensus 238 ~~---Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 238 QH---GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred Hh---CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 63 3566778899999999999999999999999999988766 6655555666677777766554444 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
-.+++++...++.+. ....+...++.+|..+|.-++=...+.++-+.
T Consensus 314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 999999999888764 34567888999999998887777777776554
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=1.1e-15 Score=136.92 Aligned_cols=209 Identities=17% Similarity=0.135 Sum_probs=184.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
......+...||.-|+..|++..|...+++|++. +|....+|..+|.+|...|+.+.|.+.|++|+.+.++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 3455678899999999999999999999999999 6667889999999999999999999999999999887
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..++++.|..++.+|++++|..+|++|+.. +.-.....++.++|.|.++.|+++.|.++|++++++
T Consensus 102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7 578999999999999999999999999873 222234678999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+|....+...++..+...|++..|..++++.... -+-.+..+....++-...|+...+. .+=.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~ 231 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQA 231 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 8999899999999999999999999999988754 2456677777788889999999988 8877
Q ss_pred HHHhhccc
Q 004812 710 TLLDANSR 717 (729)
Q Consensus 710 ~al~~~p~ 717 (729)
++-.+.|.
T Consensus 232 qL~r~fP~ 239 (250)
T COG3063 232 QLQRLFPY 239 (250)
T ss_pred HHHHhCCC
Confidence 88888887
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.72 E-value=7.1e-15 Score=156.01 Aligned_cols=437 Identities=15% Similarity=0.085 Sum_probs=300.5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004812 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289 (729)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (729)
+......+|..+.++-.+|.+|....+ ...|..+|.+|.++- +..+.+...++..|....+++.|.....
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 344455566666666666766666654 666666666666541 2234555556666777777777766644
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004812 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
.+-+... .......|..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|++..|
T Consensus 551 ~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 551 RAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH
Confidence 4333321 1223334667899999999999999999999988 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHcCCH
Q 004812 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSLSRY 448 (729)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~ 448 (729)
++.|.++..+.|... ...+..+.+....|.|.+|+..+...+...... .-....+.++..++..+...|=+
T Consensus 616 lKvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred HHhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999998887653 457788899999999999999998877544322 22345677888888888888989
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C--------------------CH------HHHHHHHHH
Q 004812 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT---G--------------------KL------RESKSYCEN 499 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g--------------------~~------~~A~~~~~~ 499 (729)
.+|..+++++++.+.-............|..++....-. . .. --|.+++-.
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 999999999988766544222122223333333322211 1 00 012222222
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 004812 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 571 (729)
.+.+. .....|++||.-|+. +.+...|+.++.+++++..+. ...|+.||.+ ...
T Consensus 768 hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~ 829 (1238)
T KOG1127|consen 768 HLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGI 829 (1238)
T ss_pred HHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hcc
Confidence 22221 124567888887766 234457999999999998766 3567777877 556
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
|++.-|..+|-+++... +.....|.++|.++....+++.|...|.++..+ +|.....|...+.+
T Consensus 830 gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali 893 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALI 893 (1238)
T ss_pred chhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHh
Confidence 88888888888877652 224567888888888888888888888888887 77777777777777
Q ss_pred HHHcCChHHHHHHHHHHHHHHH-----------------------------------------HHcCCCChhHHHHHHHH
Q 004812 652 YDAIGRLDDAIEILEFVVGIRE-----------------------------------------EKLGTANPDVDDEKRRL 690 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~-----------------------------------------~~~~~~~p~~~~~~~~L 690 (729)
....|+.-++...|...-.+.. ..+=..+|+...++...
T Consensus 894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHH
Confidence 7777766666666655211110 00113578888899999
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 691 AELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
|.++..++.+++|. ....+++.+
T Consensus 974 gstlEhL~ey~~a~-ela~Rligl 996 (1238)
T KOG1127|consen 974 GSTLEHLEEYRAAL-ELATRLIGL 996 (1238)
T ss_pred HhHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999888 777666544
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=2.1e-15 Score=165.36 Aligned_cols=263 Identities=11% Similarity=-0.030 Sum_probs=202.2
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc---------CChHHHHHHHHHhc
Q 004812 224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI 292 (729)
Q Consensus 224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 292 (729)
++.+|...+... +.+++|+.+|++|+++. |..+.++..+|.+|... +++++|+..+++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445565444332 23678888888888753 45577788888887644 34899999999999
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004812 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 372 (729)
++. ++++. ++..+|.++...|++++|+.+|++++++ +|....+++.+|.++...|++++|+..
T Consensus 332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 986 44443 4888999999999999999999999999 789999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 373 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
+++++++.|... ..+..++.+++..|++++|+..+++++.. ..+.....+..+|.++..+|++++|.
T Consensus 395 ~~~Al~l~P~~~--------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 395 INECLKLDPTRA--------AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHHHhcCCCCh--------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999987643 22445566677789999999999887642 12444567788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
..+.++... .+....++..++..|...| ++|...+++.++..... ..-...++.+|.-.|+
T Consensus 462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~ 522 (553)
T PRK12370 462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE 522 (553)
T ss_pred HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence 999887665 6677778888898888888 48888888877764431 1112236777788888
Q ss_pred HHHHHHHHHHHHH
Q 004812 533 LEQAIKLLQKALK 545 (729)
Q Consensus 533 ~~~A~~~~~~al~ 545 (729)
-+.+..+ +++.+
T Consensus 523 ~~~~~~~-~~~~~ 534 (553)
T PRK12370 523 AIAEKMW-NKFKN 534 (553)
T ss_pred hHHHHHH-HHhhc
Confidence 8777766 55443
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2.6e-15 Score=146.92 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=177.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.......+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH---------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456788999999999999999999999999987 3334678889999999999999999999999988654
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..++..+|.++...|++++|+.+|++++.... .......+..+|.++...|++++|..+|.+++..
T Consensus 98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 35778999999999999999999999987421 1123456888999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
.|....++..+|.++...|++++|+.++++++.+ .|.....+..++.++...|+.++|. .+.+
T Consensus 165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 227 (234)
T TIGR02521 165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA 227 (234)
T ss_pred --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 6777778999999999999999999999999876 2445666778899999999999999 8888
Q ss_pred HHHhhcc
Q 004812 710 TLLDANS 716 (729)
Q Consensus 710 ~al~~~p 716 (729)
.+....|
T Consensus 228 ~~~~~~~ 234 (234)
T TIGR02521 228 QLQKLFP 234 (234)
T ss_pred HHHhhCc
Confidence 8776654
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=4e-14 Score=149.60 Aligned_cols=312 Identities=13% Similarity=0.077 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
.......|.+....|+++.|.+.+.++.+..+.. ...+...|.++...|+++.|..++.++.+.. ++..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~ 152 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDN 152 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCc
Confidence 3444666778888999999999998887765332 2446678999999999999999999886422 1111
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|...+.+.++...
T Consensus 153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---- 218 (409)
T TIGR00540 153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---- 218 (409)
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence 123444589999999999999999999987 788889999999999999999999999999887621
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
.+.............-+...+..+++...+.++....+.. ......++..++..+...|++++|+..++++++...
T Consensus 219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 1122222222222222234445555556666666654432 111246778899999999999999999999998632
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
. + .... ............++...+++.++++++. +|+.. ..+..+|.++.+.|++++|.++|++
T Consensus 295 d----~-~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 295 D----D-RAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred C----c-ccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1 1 1000 0122233334468889999999999988 77777 7888999999999999999999995
Q ss_pred --HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 668 --VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 668 --al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+++. +|+... +..||.++...|+.++|. +++++++..
T Consensus 361 a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l~~ 399 (409)
T TIGR00540 361 VAACKE--------QLDAND-LAMAADAFDQAGDKAEAA-AMRQDSLGL 399 (409)
T ss_pred hHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence 5443 566555 559999999999999999 999998664
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.71 E-value=3.2e-13 Score=137.95 Aligned_cols=443 Identities=16% Similarity=0.159 Sum_probs=308.6
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004812 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (729)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (729)
.........|+.+..+-..|..+...|+ -++|..+...++.. ++....||+.+|.++....+|++|+.+|
T Consensus 29 ~~~~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 29 LIKQILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3344455788888999999999999997 89999998888863 2445789999999999999999999999
Q ss_pred HHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHH
Q 004812 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSE 368 (729)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 368 (729)
+.|+.+. +++ ...|..++....++++++-....-.+.+++ .|.....|..+|..+...|++..
T Consensus 99 ~nAl~~~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 99 RNALKIE-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHHhcC-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999985 333 345999999999999999999988888888 58888899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCH
Q 004812 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448 (729)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 448 (729)
|....+...................+......+....|.+++|++.+..-.. ...+........|.++..++++
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHhhhHHHHHHHHhhH
Confidence 9999988877765444444455566677778888899999999988764321 2223334556678999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCC----------CCCChHHHH
Q 004812 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPV----------PGVPPEEIA 517 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~----------~~~~~~~~~ 517 (729)
++|...|...+.. .|+....+..+-.++...-+--+++ ..|...-+.+.... .+..-+...
T Consensus 236 EeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 9999999999987 7888777777777665222333333 44443333222210 000111111
Q ss_pred HHH-------------HHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--------------CCCCcHHHHHHHHHHHHHH
Q 004812 518 SGL-------------TDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------GQQSTVAGIEAQMGVMYYM 570 (729)
Q Consensus 518 ~~~-------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~ 570 (729)
.-+ ..+-.+|. +... ...+++.+..+.... ..+..+...++.++.-+..
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk---~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYK---DPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHh---chhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 101 11111111 1111 113444333332211 1234567778899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.|+++.|..+++.|+.- .+.....+...|+++...|++++|..++.++.++ +....-+-..-|.
T Consensus 384 ~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAK 447 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAK 447 (700)
T ss_pred cccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHH
Confidence 99999999999999874 4557788889999999999999999999999988 3322223346788
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH--HHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 651 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~--~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
...+..+.++|.+...+.-.-..... .+-.+..-.| ..-|..|.++|++..|+ +-|...-..
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~~~~-~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~ 511 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGFGAV-NNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKH 511 (700)
T ss_pred HHHHccccHHHHHHHHHhhhcccchh-hhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHH
Confidence 88899999999887765543211000 0011111223 33478889999998888 655554443
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.7e-14 Score=152.52 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
+...+..|...+..|+ |+.|.+...++.+.. +.| ...+...|.++...|+++.|..++.++.+..
T Consensus 84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~-------~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA-------AEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC-------CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 3455778888889997 999999988876642 222 3446677999999999999999999997654
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
++.. +.+....+.++...|++++|...+++.++. .|....++..++.++...|++++|.+.+.+.++..
T Consensus 149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2221 112445699999999999999999999988 68888999999999999999999999999888763
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
.... ............-....+..+++.+.+..+..... ...+.....+..++..+...|++++|+..++++++
T Consensus 218 ~~~~----~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 LFDD----EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred CCCH----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 2111 10111111222222333444444455554443211 11123457788899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHH
Q 004812 461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (729)
Q Consensus 461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (729)
. .|+.... ...........++...++..++++++.. .+++. ...+..+|.++...|++++|.+
T Consensus 292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~-~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------DDKPK-CCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------CCChh-HHHHHHHHHHHHHcccHHHHHH
Confidence 7 3443321 1222333344578889999999998872 22332 3678899999999999999999
Q ss_pred HHHH--HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004812 539 LLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 539 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
+|++ +++..++. ..+..+|.++...|+.++|..+|++++...-.+++
T Consensus 357 ~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 357 AFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred HHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 9995 55543332 34568999999999999999999999887655443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=2.4e-15 Score=151.07 Aligned_cols=247 Identities=16% Similarity=0.125 Sum_probs=179.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
+..+.++..+.+++... .-++...+..++.+|.+|...|++++|+..|++++++ .|....++..+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 45677777777766321 1234455788999999999999999999999999998 7888999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004812 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (729)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (729)
..|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++.+..+ ....+ .
T Consensus 110 ~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~---~ 172 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALW---L 172 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---H
Confidence 999999999999999998 444567899999999999999999999999999876542 11111 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
.+....+++++|+..|.+++... +. . .|. .+.++...|++.++ ..++.+.+.+..... -.|....+|
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~----~~--~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~ 239 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKL----DK--E----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETY 239 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhC----Cc--c----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHH
Confidence 23455788999999998766431 11 1 111 34555556665443 233333321110000 045667899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+.+|.++..+|++++|+.+|++++++. .|+.+...+.+.++....++
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999862 24666666666655554443
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=8.7e-13 Score=129.55 Aligned_cols=432 Identities=15% Similarity=0.092 Sum_probs=298.3
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
-....|...|.--..+++ +..|...|++||..- ......+...+.+-++......|..++.+|+.+.+
T Consensus 71 ~~~~~WikYaqwEesq~e-~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-- 138 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKE-IQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-- 138 (677)
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--
Confidence 344455566655555554 666666666666531 22345566778888888888888888888887752
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (729)
. .-..|+....+-..+|+..-|.+.|++-+.. .|+. .+|......-......+.|...|++.+-
T Consensus 139 ---R----VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 139 ---R----VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred ---h----HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 1 1123666666677788888888888888777 3433 5566666666667777788888777766
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
..|+. ..+...+..-...|+...|...|.+|+..+. ++......+...|..-..+..++.|...|+-|
T Consensus 203 ~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA 270 (677)
T KOG1915|consen 203 VHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYA 270 (677)
T ss_pred ecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 3466777777777888888888877765432 23334444555555556666666666666655
Q ss_pred HHHH---------------HHhcC---------------------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 459 LTAF---------------KTNKG---------------------ENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 459 l~~~---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
++.. ++.+| .++|..-.+|+.+-.+-...|+.+.-.+.|++|+.
T Consensus 271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 5431 11111 12566667888888888888999999999999987
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 503 IYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
-..-.............|.+.+.. -....+.+.+.+.|+.++++.|.. ..+.+.+|...|.....+.+...|.+.+
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 632210000011122233333321 234678999999999999987643 4567888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004812 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 661 (729)
-.|+-.+++ ..++.....+-.++++++....+|++-++. .|....++...|.+-..+|+.+.|
T Consensus 428 G~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 428 GNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHH
Confidence 999876543 234555566777889999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 662 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...|+-|+..-. -+-|. ..+......-...|.++.|. ..|+.+|+..+.
T Consensus 491 RaifelAi~qp~----ldmpe--llwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h 539 (677)
T KOG1915|consen 491 RAIFELAISQPA----LDMPE--LLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHhcCcc----cccHH--HHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence 999999886310 11122 23444556667889999999 999999998876
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.3e-13 Score=134.42 Aligned_cols=431 Identities=13% Similarity=0.108 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004812 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (729)
..++...+.+...++ |++|+....+.+.+. |+...+++.--.+..+.++|++|+.+.+.-.... .
T Consensus 13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V 77 (652)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence 456666677778887 888887777777653 3335567777788999999999997666544321 0
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004812 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.....+..|.|.++++..++|+..++-+ ++....++...|.+++++|+|++|+..|+..++...
T Consensus 78 -----~~~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 78 -----INSFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred -----cchhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 0111368899999999999999998821 233345677789999999999999999998876543
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
+..+. -...+.++..-...++ .....+. .......+++.|.++...|+|.+|++.+++++.
T Consensus 142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33211 1111122211111111 1111222 233567889999999999999999999999999
Q ss_pred HHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH
Q 004812 461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
++++....++ .....+...|+.++..+|+..+|...|...+.... .+.+..+.+-++|-.+-....-+
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-----~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-----ADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-----CCchHHHHHhcchhhhccccccC
Confidence 9887664332 23456788899999999999999999999887632 22333444444443221111111
Q ss_pred H---------------------------HHH-----------HHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 004812 534 E---------------------------QAI-----------KLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY 574 (729)
Q Consensus 534 ~---------------------------~A~-----------~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 574 (729)
+ +++ .--.++.++....++..+ ....++..-+ .......+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~-t~~~~~~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEA-TKVREKKH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHH-HHHHHHHH
Confidence 1 000 000112222222222222 1111111111 11111133
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (729)
.+|..++ ....+.++.....+...++.+...+|+++.|++.+...+......... --....+...+-..|..
T Consensus 358 ~ka~e~L-------~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 358 KKAIELL-------LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGTVGAIVALYYK 429 (652)
T ss_pred hhhHHHH-------HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhHHHHHHHHHHh
Confidence 3343333 333344444445677888999999999999999999555332221111 11122233455566788
Q ss_pred cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 655 IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++.+-|...+..++..++...... +.....+..++.+-.+.|+.++|. ..|+++++.+|.
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~ 490 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN 490 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence 8888889999999998887655333 566677778888888899999999 999999999887
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=3.6e-15 Score=133.54 Aligned_cols=209 Identities=17% Similarity=0.151 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
.....+...||.-|...|++..|...+++||+. +|....+|..+|.+|...|+.+.|.+.|++|+.+.|+++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 344567889999999999999999999999999 899999999999999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (729)
+ ++++.|..++.+|++++|...|++|+. .+..+....++.++|.|..+.|+++.|..+|++++++
T Consensus 104 d--------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--- 168 (250)
T COG3063 104 D--------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--- 168 (250)
T ss_pred c--------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---
Confidence 4 599999999999999999999999975 4456677889999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
+|........++..++..|+|..|..++++...... ..+..+.....+-...|+-+.|-.+-.+..
T Consensus 169 -----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 169 -----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred -----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 788889999999999999999999999998776621 235556666677778899998888877777
Q ss_pred HHHHhC
Q 004812 545 KIYNDA 550 (729)
Q Consensus 545 ~~~~~~ 550 (729)
..+|..
T Consensus 235 r~fP~s 240 (250)
T COG3063 235 RLFPYS 240 (250)
T ss_pred HhCCCc
Confidence 776654
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=1e-13 Score=145.13 Aligned_cols=334 Identities=13% Similarity=0.022 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004812 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (729)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (729)
.++..+|.++...|+.+.+...+.++...... +....+.....+.++...|++++|...++++++..|...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 45889999999999999998888888877533 334556677889999999999999999999998876542
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
.++.. +..+...|++..+.....+++.. ..+..+.....+..+|.++..+|++++|+..+++++++
T Consensus 78 ----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------- 143 (355)
T cd05804 78 ----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------- 143 (355)
T ss_pred ----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 22333 55666666655555555555433 34566777788889999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
.|....++..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..|++++...+
T Consensus 144 -~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 144 -NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 6777889999999999999999999999999987432 1223345677899999999999999999999864432
Q ss_pred hCCCCCCcHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 549 DAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (729)
Q Consensus 549 ~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (729)
. .......+. .+...+...|....+..+ +.+.......... ..........+.++...|+.++|...++..
T Consensus 218 ~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 218 E----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred C----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 111111111 223333444543333222 2222222111111 112233346788889999999999999998
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 627 RSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 627 l~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
........ .........+....|.++...|++++|+..+..++.+...+-|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 87655410 00123345677888999999999999999999999988666553
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=1e-14 Score=142.79 Aligned_cols=206 Identities=16% Similarity=0.123 Sum_probs=172.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
....+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+++++++...
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Confidence 4455778899999999999999999999999887 677788999999999999999999999999998832
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
....++..+|.++...|++++|+.++++++.... .......+..+|.++...|++++|..++.+++..
T Consensus 97 -------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 97 -------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345788899999999999999999999987421 1222456778999999999999999999999876
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
.+ ....++..+|.++...|++++|..++++++.. .|.....+..++.++...|+.++|..+.+.
T Consensus 165 ~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 165 DP--------QRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred Cc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 21 12457888999999999999999999999987 455566777889999999999999998877
Q ss_pred HHHH
Q 004812 668 VVGI 671 (729)
Q Consensus 668 al~~ 671 (729)
+...
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 6543
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.9e-13 Score=128.11 Aligned_cols=299 Identities=14% Similarity=0.160 Sum_probs=232.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--ChhHHH
Q 004812 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ--DAEVAS 433 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 433 (729)
-|.-+.-..+.++|+..|...++..+... .+...||.+|...|..+.|+...+..+. .++ ......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHH
Confidence 45555667889999999999998665543 5689999999999999999998865432 122 234567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
++..||.-|+..|-++.|...|....+. ......++..|..+|....+|++|+...++...+-.+ ...
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~ 176 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYR 176 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cch
Confidence 7889999999999999999999988775 3445678889999999999999999999988887433 346
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
..++..|..||..+....+++.|+..+.+|++..++. ..+-..+|.++...|+|+.|++.++.+++.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------ 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ------ 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence 6788999999999999999999999999999987766 355567999999999999999999988874
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
++.+.+.++..|..+|..+|+.++.+..+.++.+. .+. ..+...++..-....-.+.|..++.+-+..
T Consensus 244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 45678889999999999999999999999999887 232 235566677777777778888887776653
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHh---CCHhHHHHHHHHHH
Q 004812 674 EKLGTANPDVDDEKRRLAELLKEA---GRVRSRKAQSLETL 711 (729)
Q Consensus 674 ~~~~~~~p~~~~~~~~La~~~~~~---g~~~~A~~~~l~~a 711 (729)
+|.... .++|....... |...+.. ..++..
T Consensus 312 ------~Pt~~g-f~rl~~~~l~daeeg~~k~sL-~~lr~m 344 (389)
T COG2956 312 ------KPTMRG-FHRLMDYHLADAEEGRAKESL-DLLRDM 344 (389)
T ss_pred ------CCcHHH-HHHHHHhhhccccccchhhhH-HHHHHH
Confidence 676544 34444443332 3344444 444443
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.69 E-value=6.4e-14 Score=148.94 Aligned_cols=374 Identities=14% Similarity=0.106 Sum_probs=278.9
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004812 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (729)
..+...|+..|-+++++. + ....++..||.+|....+...|..+|++|.++ ++..+.+....+
T Consensus 471 rK~~~~al~ali~alrld-----~----~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-----V----SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-----c----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence 445788999999999886 2 23445888999999998999999999999999 888999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004812 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (729)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (729)
..|....+++.|...+..+-+..+... ....|..+|..|...+++..|+..|+.+++ .+|....+|..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR------~dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALR------TDPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhc------CCchhHHHHHH
Confidence 999999999999998655554443322 123466699999999999999999999875 46777899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004812 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (729)
+|.+|...|++..|++.|.++..+ .|......+..+.+....|+|.+|+..+...+..+..-.. .....+
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa 671 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA 671 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence 999999999999999999999998 7888899999999999999999999999998877544211 123457
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH-----------------------cCC
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM-----------------------LGN 573 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~-----------------------~g~ 573 (729)
.++..++..+...|-+..|..+++++++.+.-..... ......|..++.++.- ++.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 7788888888888888889999988887765332211 1111112222221111 111
Q ss_pred H------HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 574 Y------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 574 ~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
. --|.+++-..+.+.. .+..|+++|.-|++ +.+...|+.++.+++.+ ..
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~---------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~a 814 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAI---------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CA 814 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhh---------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hh
Confidence 0 112222322222211 13467888877765 22345899999999998 55
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+....|..||.+ ...|++.-|..+|-+.+.. .|.....|.++|.++....+++-|. ..|..+..++|.
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL 882 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence 666677777776 5568888888888887765 5777788888888888888888888 888888888886
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=1.7e-13 Score=143.96 Aligned_cols=303 Identities=13% Similarity=0.072 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
+...+.-|......|+|++|.+.+.++-+. .+. + ...+...+.+....|+++.|..++.++... .+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~ 149 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--P--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD 149 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--h--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 344456677777789999999776654432 111 1 223445566669999999999999998642 22
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 430 EV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 430 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+. .......+.++...|++++|+..+++.++. .|....++..++.+|...|++++|+..+.+..+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-- 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-- 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence 21 122234589999999999999999999987 7888899999999999999999999999988876211
Q ss_pred CCCChHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 509 PGVPPEEIA----SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 509 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
+..... .++..+........+ ...+.+..+..+.. .+....+...++..+...|+.++|...++++
T Consensus 220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122222 122222222222222 23333333322221 1122567788999999999999999999988
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (729)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (729)
++. ..+ + ......+. ...++++++++.+++.++. +|+....+..+|.++...|++++|.++
T Consensus 290 l~~-----~~~-~---~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 290 LKR-----QYD-E---RLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred Hhc-----CCC-H---HHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 763 111 1 11122222 3458999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 665 LEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 665 ~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
|+++++. .|+.. .+..|+.++...|+.++|. ++|++++.+.
T Consensus 351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLMLT 391 (398)
T ss_pred HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHhhh
Confidence 9999986 46654 4568999999999999999 9999998764
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.1e-13 Score=127.85 Aligned_cols=275 Identities=17% Similarity=0.196 Sum_probs=215.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHH
Q 004812 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306 (729)
Q Consensus 227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 306 (729)
.|.-++...+ .++|++.|...++. ++....+...||..|.+.|..+.|+.+.+..+... .-....
T Consensus 41 ~GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~~q 105 (389)
T COG2956 41 KGLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTFEQ 105 (389)
T ss_pred hHHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCchHH
Confidence 4444555555 89999998888763 35668888999999999999999999988877653 111233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004812 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
...++..||.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++...+.++.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~--- 174 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT--- 174 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---
Confidence 4567899999999999999999999987765 23445688889999999999999999988888776554
Q ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004812 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (729)
.....+..+..++..+....+++.|+..+.+|++. ++....+-..+|.++...|+|..|++.++.+++.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ----- 243 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ----- 243 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----
Confidence 45677888999999999999999999999999863 5556677788999999999999999999998887
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 004812 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (729)
|......+...|..+|..+|+.++.+..+.++.+.... ..+...++.+-....-.+.|..++.+-+..
T Consensus 244 --n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 244 --NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred --ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 45566778889999999999999999999999887433 223445566666666677788777776665
Q ss_pred HHhC
Q 004812 547 YNDA 550 (729)
Q Consensus 547 ~~~~ 550 (729)
.|..
T Consensus 312 ~Pt~ 315 (389)
T COG2956 312 KPTM 315 (389)
T ss_pred CCcH
Confidence 4433
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.5e-15 Score=151.74 Aligned_cols=269 Identities=16% Similarity=0.088 Sum_probs=202.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
..|..+++.|+..+|.-.|+.|+.-. | ..+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-----P----QHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-----h----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 47999999999999999999999775 3 34567999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
..++..||..|...|.-.+|+.++.+.+...+.......... .-......-......+..-.++|-.+. ...+. .
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa---~~~~~-~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAA---RQLPT-K 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHH---HhCCC-C
Confidence 999999999999999999999999999876643321100000 000000000000001112223332222 22221 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
....+...||.+|...|+|++|+.+|+.||.. .|.....|..||-.+..-.+..+|+..|.+|+++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------ 493 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------ 493 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence 34567888999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A 577 (729)
.|..+++.++||..++.+|.|++|.++|-.||.+.+...+... .--.+|..|-.++...++.+-+
T Consensus 494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6677899999999999999999999999999999887433221 1123444455555556665543
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=3.6e-14 Score=148.55 Aligned_cols=339 Identities=16% Similarity=0.104 Sum_probs=237.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004812 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
+|+.+..+..+|..+...|+ ++.|...+.++....... ..........+.++...|++++|...++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAAR------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 68999999999999988886 899888888877765322 2234556678999999999999999999999875
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004812 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
+.+.. ++.. +..+...|++..+.....+++.. ..+.+|....++..+|.++...|++++|+..++++
T Consensus 74 ----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 74 ----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332 2332 55666666665555555555543 23446788888889999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
+++.+... .++..+|.++...|++++|+.++.+++..... ........+..+|.++...|++++|+..|+
T Consensus 141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99887652 46889999999999999999999998764332 122334567789999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004812 457 KALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (729)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (729)
+++.... ........ ...+...+...|....+..+ +.+........+. +.........+.++...|+.+
T Consensus 211 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 211 THIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence 9864310 01111111 11223333344543333332 2222221111111 112222346788888999999
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004812 535 QAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 535 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
+|...+.......... .+.......+....+.++...|++++|+..+..++.+...+++.+
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999999888776551 022223345667789999999999999999999999988888765
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=5.2e-14 Score=147.87 Aligned_cols=308 Identities=13% Similarity=0.049 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
+...+..|...+..|+ |++|.+...++-+. .+.|. ..+...+......|+++.|..+|.++.+..
T Consensus 84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQPV--VNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 3455677888888887 88888666654432 11222 224444666699999999999999998764
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 380 (729)
++.. .......+.++...|++++|+..++++++. .|....++..++.+|...|+|++|+..+.+..+..
T Consensus 149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 2221 122445589999999999999999999888 68889999999999999999999999998887654
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (729)
.............++..+........+-+....+++..- ...+....+...++..+...|+.++|...++++++
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 321100000000112221111122222222222222211 11234456778899999999999999999999987
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 004812 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540 (729)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (729)
. .++ .......+. ...+++++++..+++.++. +|+....+..+|.++...+++++|.++|
T Consensus 292 ~--------~~~-~~l~~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 292 R--------QYD-ERLVLLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred c--------CCC-HHHHHHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 222 122222222 2449999999999998877 4455678899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
++++...|+. ..+..++.++...|+.++|..+|++++.+.
T Consensus 352 e~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999986554 456689999999999999999999998864
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.1e-15 Score=141.26 Aligned_cols=290 Identities=14% Similarity=0.075 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
.....-....|..++...+|.+|+..|..|+++ .|+.+..|.+.+.++...++|++|.-..++.+++.+...
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~ 117 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS 117 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc
Confidence 334455677889999999999999999999999 578899999999999999999999999999988876554
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLAS------------MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG 452 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 452 (729)
. .+...+.++..+++..+|.+.++..- .+.......|....+...-+.|+...|++++|.
T Consensus 118 k--------~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 118 K--------GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred c--------cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 2 35566777777777777766554211 111111122333444445566666677777776
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC---CCChHHHHHHHHHHHHHHHh
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP---GVPPEEIASGLTDVSSIYES 529 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~la~~~~~ 529 (729)
..--..+++ ++....+++..|.++...++.+.|+..|++++.+...... ....+.....+..-|.-.++
T Consensus 190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 666666655 5666666666677777777777777777777666211100 00011122333344444555
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004812 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (729)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (729)
.|++..|.+.|..++.+.|.. ....+.+|.+++.+....|+..+|+...+.++.+ .+.+..++...|.+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c 330 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANC 330 (486)
T ss_pred ccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHH
Confidence 555555555555555554432 2233444555555555555555555555555554 23344455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 004812 610 CVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~ 629 (729)
+..+++|++|.+.|+++++.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555554
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=1.8e-14 Score=144.83 Aligned_cols=221 Identities=18% Similarity=0.103 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004812 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (729)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (729)
.+.++..+.+++...+ ......+..++.+|.+|...|++++|+..|++++++. ++.+ .+++.+|.+
T Consensus 42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~----~a~~~lg~~ 107 (296)
T PRK11189 42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMA----DAYNYLGIY 107 (296)
T ss_pred HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCH----HHHHHHHHH
Confidence 5677777777764321 1224457889999999999999999999999999986 4443 359999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004812 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (729)
+...|++++|+..|++++++ +|....++.++|.++...|++++|+..|++++++.|... . ...
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~ 170 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL 170 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence 99999999999999999999 788999999999999999999999999999999876542 0 111
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhcCCCChhHH
Q 004812 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA---FKTNKGENHPAVA 474 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~ 474 (729)
...+....+++++|+..+.++.... ++.. + ..+.++...|++..+ ..+..+.+. ..+. .+...
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~~ 236 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKL-----DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERLC 236 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhC-----Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHHH
Confidence 1223456789999999997765221 1111 1 134555566766443 233333321 1111 35667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+|+.+|.++...|++++|+.+|+++++.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999988
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.4e-14 Score=139.92 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=232.6
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+.-....|..++.... |.+|+..|..|++++ |+.+..|.+.+.+++..|+|++|.-..++.+++..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-- 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-- 114 (486)
T ss_pred HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence 345567788889999986 999999999999986 44578899999999999999999999999998862
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhCC--CCchHHHHHHHHHHHHHHhcCHHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE 368 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 368 (729)
..+ ..+...+.++..+++..+|...++..- .....+... ..|....+...-+.++...|++++
T Consensus 115 ---~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 115 ---GFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred ---Ccc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 222 236677788888887777776555211 111111111 125556667778899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHH
Q 004812 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND------QDAEVASVDCSIGDTY 442 (729)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~ 442 (729)
|...--..+++.+.+. .++...|.++...++.+.|+.+|++++.+-.... ..+.....+...|.-.
T Consensus 188 a~~ea~~ilkld~~n~--------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 188 AQSEAIDILKLDATNA--------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred HHHHHHHHHhcccchh--------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 9999888888776653 5688899999999999999999999986533221 1345566677889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (729)
+..|++..|.+.|..+|.+-.. +....+.+|.++|.+...+|+..+|+..++.++.+ ++....++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~ 326 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR 326 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence 9999999999999999998222 23456788999999999999999999999999999 7788999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 523 VSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|.++..+++|++|++.|+++++....
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999998655
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.3e-12 Score=129.30 Aligned_cols=462 Identities=13% Similarity=0.039 Sum_probs=291.7
Q ss_pred cccCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004812 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
+.........+++|.++......+....|+...++.....++.+.++ |++|+...+.-... .......+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~f 83 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFF 83 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhH
Confidence 33334445566677776666666677779999999999999999987 76666433321110 00111226
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ----------- 338 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 338 (729)
..+.|.++++..++|+..++-+-.. + ..++...|.+++++|+|++|+..|+..++-.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~~--------~----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDRL--------D----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccccc--------c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 7899999999999999999822211 1 1136678999999999999999999874321
Q ss_pred ------------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHH
Q 004812 339 ------------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMG 399 (729)
Q Consensus 339 ------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~lg 399 (729)
.+..........+.+++.|.++...|+|.+|++.++++++++....... ......+...++
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 0111111223567889999999999999999999999988876654321 123456788899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH----HHHHhcCCCChhHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD-EAGFAYQKALT----AFKTNKGENHPAVA 474 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~----~~~~~~~~~~~~~~ 474 (729)
.++..+|+.++|...|...+.. ...+.+..+.+-++|-.+-....-++ .++..++.... .+.... .+....
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~ 307 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQ 307 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHH
Confidence 9999999999999999877642 33445555656555544332222222 11111111100 000000 023334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
.++.+.+.+.+..+.-+.+.+..... ++..+.....++..-+. ......+.+|.+++...-+-.+.
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~l--------p~~~p~~~~~~ll~~~t-~~~~~~~~ka~e~L~~~~~~~p~----- 373 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASL--------PGMSPESLFPILLQEAT-KVREKKHKKAIELLLQFADGHPE----- 373 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhC--------CccCchHHHHHHHHHHH-HHHHHHHhhhHHHHHHHhccCCc-----
Confidence 55666666666666665554443321 22223333333333332 33333677777777665443322
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004812 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (729)
.-..+...++.+...+|+++.|+..+...+..+......- .+.+.+-..+-..+...++.+-|...+.+|+..+....
T Consensus 374 -~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 374 -KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred -hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 2245667789999999999999999986553322211110 01122333344566777777889999999998877654
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.. .+.....+..++.+-.+.|+-++|...+++.++. +|...+++..|...|... +.+.|.
T Consensus 452 t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 452 TG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred cc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 33 3555557778888888899999999999999976 578888888888887765 556665
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=8.3e-15 Score=147.98 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=205.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
+..|..+++.|+..+|.-.|+.|++ .+|..+.+|..||.+....++-..|+..+++++++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence 5678999999999999999998875 58999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC-CCC-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-GVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
++..||..|...|.-.+|+.++.+-+....+... ... ...... ...-......+..-.++|-.+....+..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~--- 427 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK--- 427 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 9999999999999999999999998776311100 000 000000 0000000111222333444444333321
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.-..+...||.+|...|+|++|+.+|+.|+.. .+.....|+.||-.+....+.++|+..|++|+++
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---- 493 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---- 493 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence 12467889999999999999999999999985 2335789999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHhCCHhHHH
Q 004812 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD--VDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.|..++++++||..|..+|.|++|..+|-.|+.+.++..+..... .-.+|..|-.++...++.+-+.
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999999999999999999999987643311111 1245555666677777766443
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=8e-13 Score=125.11 Aligned_cols=401 Identities=18% Similarity=0.103 Sum_probs=244.4
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHH
Q 004812 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (729)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (729)
+...| |..|+.+++-++..-+ .+....-..+|.|++++|+|++|+..|+-+.... ++ ....+
T Consensus 33 ls~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~ 94 (557)
T KOG3785|consen 33 LSNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELG 94 (557)
T ss_pred Hhccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccc
Confidence 33444 8888888777664321 1112334558999999999999999999887632 11 23358
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004812 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
.+||.|++.+|.|.+|.....++-+ .|.....++.++. +.++-++-.. |...+.-..
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~-fh~~LqD~~---------- 151 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILT-FHSSLQDTL---------- 151 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHH-HHHHHhhhH----------
Confidence 8999999999999999887766533 2555556666554 4455333333 222222111
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
.-...|+.+++..-.|.+|++.|.+.+. +.+.....-..+|.||+++.-|+-+.+.+.--+.. .|
T Consensus 152 -EdqLSLAsvhYmR~HYQeAIdvYkrvL~------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~p 216 (557)
T KOG3785|consen 152 -EDQLSLASVHYMRMHYQEAIDVYKRVLQ------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FP 216 (557)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHh------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CC
Confidence 2245677778888889999999988764 56666667778899999999988887777666554 56
Q ss_pred hHHHHHHHHHHHHHHc--CCHHHH----------------HHHHH----------HHHHHHhcCCCCCChHHHHHHHHHH
Q 004812 472 AVASVFVRLADMYNRT--GKLRES----------------KSYCE----------NALRIYEKPVPGVPPEEIASGLTDV 523 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~--g~~~~A----------------~~~~~----------~al~~~~~~~~~~~~~~~~~~~~~l 523 (729)
+...+....+..++++ |+..++ ..+++ -|++.... --..+..+..+|
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~-----L~~~IPEARlNL 291 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS-----LMKHIPEARLNL 291 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH-----HHhhChHhhhhh
Confidence 6666666666655543 332221 11111 12222111 012245677889
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----
Q 004812 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF----- 598 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----- 598 (729)
...|..+++..+|..+++.. .+....-|...|.++...|+--...++++-|-+.+.-.+......
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDL----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred eeeecccccHHHHHHHHhhc----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999998776532 112223445567777777766555555555554443332221000
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 599 ------------------------------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 599 ------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
......++|.++...|++.+|.++|-+.- +++-.+.......|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNKILYKSML 434 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-------ChhhhhhHHHHHHH
Confidence 01123456666666666666666655432 22223334455667
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc-cCC
Q 004812 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNN 720 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~ 720 (729)
|.||...+..+-|..++-+. ....+....+..+|......+++=-|. +.|..+-.+||. ..+
T Consensus 435 ArCyi~nkkP~lAW~~~lk~---------~t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKT---------NTPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHhcCCchHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCCcccc
Confidence 77777777777776665432 122333445556677777778877777 888888888887 443
No 89
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.9e-11 Score=120.32 Aligned_cols=390 Identities=11% Similarity=0.060 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...+...|..-..++++..|...|++||... ...+..|...+.+-.+......|..++.+|+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~------- 136 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI------- 136 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------
Confidence 3346667888888999999999999999874 123345889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 424 (729)
-|.+-..|+.....-..+|+...|.+.|++-+...|.. .+|......-.+....+.|...|++-+..
T Consensus 137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~~--- 203 (677)
T KOG1915|consen 137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVLV--- 203 (677)
T ss_pred -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhee---
Confidence 47888889988888889999999999999999887654 35777777778888999999999877542
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
+|. ...+...+..-...|+..-|...|++|++.+.. +......+...|..-..+..++.|.-+|+-|+...
T Consensus 204 ---HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 204 ---HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred ---ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 457788899999999999999999999988543 34455566677777777888888888887777653
Q ss_pred hcC---------------CCC--------------------CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 505 EKP---------------VPG--------------------VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 505 ~~~---------------~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.+. .+. ..+|....+|...-.+-...|+.+.-.+.|++|+.-.|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 331 000 112223446666667777789999999999999886654
Q ss_pred CCCCCCcHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMY---YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (729)
........-.+|..+-.++ ....+.+.+...|+.++++.+ .....++.+|...|....++.+...|.+.+-.|
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3222222222333232222 356789999999999998643 344567889999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH
Q 004812 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ 706 (729)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 706 (729)
+-. .|..- +......+-.++++++....+|++.++. .|....++...|.+-..+|+.+.|. .
T Consensus 431 IG~--------cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaR-a 492 (677)
T KOG1915|consen 431 IGK--------CPKDK-LFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRAR-A 492 (677)
T ss_pred hcc--------CCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHH-H
Confidence 887 44432 4455566778889999999999999865 7999999999999999999999999 9
Q ss_pred HHHHHHhh
Q 004812 707 SLETLLDA 714 (729)
Q Consensus 707 ~l~~al~~ 714 (729)
.|+-|+.-
T Consensus 493 ifelAi~q 500 (677)
T KOG1915|consen 493 IFELAISQ 500 (677)
T ss_pred HHHHHhcC
Confidence 99988764
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=2.6e-11 Score=128.38 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004812 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (729)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (729)
.++.....++...|++++|+.+++...... ......+-..|.++..+|++++|...|+..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 345556888999999999999998765442 123445788999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHH-----------H-------------HHHHH
Q 004812 346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLE-----------E-------------AADRR 396 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~-----------~-------------a~~~~ 396 (729)
+|+....+..+..+..... +.+.-..+|++....+|....+.... . .....
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 7888888888888774333 45666777776666555433220000 0 01111
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC-----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 397 LMGLICETKGDHEAALEHLVLASMTMIAN-----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
.+-.+|....+..-....+.......... ..+....++++.+|..|...|++++|+.+++++++.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---- 223 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---- 223 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence 22222221111111111222211111111 112234678899999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.|..+..|...|.++-..|++.+|...++.|..+ +...-.+-...+..+.+.|+.++|...+..-..
T Consensus 224 ----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 224 ----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999888 222234455677888899999999887754432
Q ss_pred HHHhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 004812 546 IYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (729)
Q Consensus 546 ~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (729)
.......+-. ...+.....|.+|.+.|++..|++.|....+.+....+..-.+
T Consensus 291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDF 345 (517)
T PF12569_consen 291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDF 345 (517)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccH
Confidence 2110001111 1233345679999999999999999999999988876654333
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=9.1e-12 Score=118.08 Aligned_cols=391 Identities=14% Similarity=0.112 Sum_probs=216.6
Q ss_pred ccccccccccCcccccC-CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004812 197 MKKRKGKLHKGQDVSEA-GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 197 ~~~~~~~~~a~~~~~~~-~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
+...++|..|+..+.-. ..+..+....-+-+|.+++..|+ |++|+..|.-+..- .+++ +....+||.|+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~ 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACCK 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHHH
Confidence 44555666666222211 22223334556678999999997 88888887766541 2222 55678899999
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004812 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
+-+|.|.+|.....++-+.. ...+.++.++. +.++-++-.. |...++ +..+-...
T Consensus 102 FyLg~Y~eA~~~~~ka~k~p----------L~~RLlfhlah---klndEk~~~~-fh~~Lq-----------D~~EdqLS 156 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPKTP----------LCIRLLFHLAH---KLNDEKRILT-FHSSLQ-----------DTLEDQLS 156 (557)
T ss_pred HHHHHHHHHHHHHhhCCCCh----------HHHHHHHHHHH---HhCcHHHHHH-HHHHHh-----------hhHHHHHh
Confidence 99999999999988875432 22333333332 3333332222 222111 12233445
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004812 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
||.+++..-.|++|+..|.+.+.-.+... ..-..++.+|.++.-|+-+.+.+.--+.. .|+...+.
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~q------~pdStiA~ 222 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLRQ------FPDSTIAK 222 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHHh------CCCcHHHH
Confidence 56666666666777777766665444332 23445666666666666665555433321 22222222
Q ss_pred HHHHHHHHH--cCCHHHH----------------HHHH----------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004812 436 CSIGDTYLS--LSRYDEA----------------GFAY----------QKALTAFKTNKGENHPAVASVFVRLADMYNRT 487 (729)
Q Consensus 436 ~~la~~~~~--~g~~~~A----------------~~~~----------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 487 (729)
+..+...++ .|+..++ ...+ +-|++..... -...+.+..+|...|..+
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L----~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL----MKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH----HhhChHhhhhheeeeccc
Confidence 222322222 1222111 1111 1112211111 123456788899999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC----------CCCCCc-
Q 004812 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA----------PGQQST- 556 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~- 556 (729)
++..+|..+++.. .|....-+...|.+....|+--...+.++-|.+.+.-. +|....
T Consensus 299 ~dVqeA~~L~Kdl------------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 299 NDVQEAISLCKDL------------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred ccHHHHHHHHhhc------------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 9999888776542 22333445666777777776544444444443333211 111100
Q ss_pred -------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 004812 557 -------------------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV 611 (729)
Q Consensus 557 -------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 611 (729)
--...++++.++...|++.+|.+.|-+.-.. .-.........||.||.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHH
Confidence 0112356788888889999998888654321 11112345667899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004812 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (729)
..++++-|-.++-+.-. ..+....+..+|..+...+++=-|.+.|...
T Consensus 440 ~nkkP~lAW~~~lk~~t---------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---------PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hcCCchHHHHHHHhcCC---------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999887755321 2344456667888888888876666666544
No 92
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2e-09 Score=106.69 Aligned_cols=458 Identities=13% Similarity=0.030 Sum_probs=299.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-ChHHHHHHHHHhcccchhh
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 298 (729)
.+...+++|..++.--+|.+.|..++++|..+.+.+..-. .....++..|+.+|.... .+..|...+++++++.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels--- 119 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS--- 119 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence 4567789999998888899999999999999987663221 223567788999999888 7999999999999986
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHHHHHHHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 376 (729)
...|......++.|+.++.-..++..|++.+.-....+..+ ......+++.+ +.++....+..+.......+
T Consensus 120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~----~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~ 193 (629)
T KOG2300|consen 120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI----CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRC 193 (629)
T ss_pred --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh----hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 44444555668899999999999999998854333221110 11122333333 33344444555555666665
Q ss_pred HHHHHhcCCCC-CHHHHH-HHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhCCC-------------ChhH--------H
Q 004812 377 LDIHKDNGSPA-SLEEAA-DRRLMG-LICETKGDHEAALEHLVLASMTMIANDQ-------------DAEV--------A 432 (729)
Q Consensus 377 l~~~~~~~~~~-~~~~a~-~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~--------~ 432 (729)
-.+........ ..+... .+..+- ..|...|+...+...+++..+....... .+.. .
T Consensus 194 ~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqi 273 (629)
T KOG2300|consen 194 GQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQI 273 (629)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhh
Confidence 55554443221 111111 122222 3345667777776666644332221111 1111 1
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 433 SVDCSIGDT--YLSLSRYDEAGFAYQKALTAFKTNKGEN--HP----AVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 433 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.++..+-.+ -...|-+++|.++-++++....+....+ .+ .....+-.+..+-.-.|++.+|++....+.+.+
T Consensus 274 caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~ 353 (629)
T KOG2300|consen 274 CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC 353 (629)
T ss_pred HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111111111 1245778999999999988766654332 11 122344566777778999999999999999987
Q ss_pred hcCCCC--CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 505 EKPVPG--VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 505 ~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
.+.- + --....+.+...+|.....-+.++.|...|..|.+..... ...+.+..++|..|...|+-+.-.+
T Consensus 354 ~r~p-~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~--- 425 (629)
T KOG2300|consen 354 TRFP-TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK--- 425 (629)
T ss_pred HhCC-chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH---
Confidence 7631 1 1122345667778888888899999999999998876433 2345666789999999887654333
Q ss_pred HHHHHHHHhCCCC------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 583 NAISKLRAIGERK------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 583 ~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
+++. ++..+ ....+.+++..|...+.++++.+|...+.+.+++...... +.-....+..|+.+..-.|
T Consensus 426 -~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~--~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 426 -ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL--NRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred -HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH--HHHHHHHHHHHHHHHHHhc
Confidence 2222 22221 1123456777888889999999999999999998532211 2333446678899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC--HhHHH
Q 004812 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR--VRSRK 704 (729)
Q Consensus 657 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--~~~A~ 704 (729)
+..++....+-++++..++ ++.|-.......+-.+|...|+ .+...
T Consensus 500 n~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~ 547 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMEN 547 (629)
T ss_pred chHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 9999999999999998776 5677777777778888999988 44443
No 93
>PLN02789 farnesyltranstransferase
Probab=99.50 E-value=8.8e-12 Score=124.73 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=185.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004812 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEEI 516 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (729)
+-.++...+++++|+..+.+++.+ +|....+|...+.++..+| ++++++..+++++.. .+..
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npkn 105 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPKN 105 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCcc
Confidence 334456678899999999999998 8999999999999999998 689999999999988 4445
Q ss_pred HHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004812 517 ASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
..+|...+.++...|+. ++++.++.+++++.++. ..+|...+.++...|++++|+.++.++++.-
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------ 172 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEED------ 172 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------
Confidence 66799999888888874 67899999999887766 5789999999999999999999999998861
Q ss_pred CChHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHH
Q 004812 595 KSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIE 663 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 663 (729)
+....+|+..+.++... |.+ ++++.+..+++.+ +|+...+|..++.++.. .++..+|+.
T Consensus 173 --~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 173 --VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred --CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 22456888888887765 323 5788888899998 89999999999999988 456677888
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC------------------CHhHHHHHHHHHHHhhcc
Q 004812 664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS 716 (729)
Q Consensus 664 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g------------------~~~~A~~~~l~~al~~~p 716 (729)
.+.+++.. .|....++..|+.+|.... ..++|. ..++.+-+.||
T Consensus 243 ~~~~~~~~--------~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~ 304 (320)
T PLN02789 243 VCLEVLSK--------DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP 304 (320)
T ss_pred HHHHhhcc--------cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence 88877653 5778889999999998643 235677 77777755565
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.48 E-value=4.5e-12 Score=123.97 Aligned_cols=181 Identities=19% Similarity=0.151 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
+.....++.+|..+...|++++|+..|++++...+.. .....+++.+|.++...|++++|+..|+++++..+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--- 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN--- 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence 4457789999999999999999999999998887644 223457889999999999999999999999986432
Q ss_pred CCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH---H--------------HHHH
Q 004812 594 RKSAFFGVALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHPDTLG---V--------------YSNL 648 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--------------~~~l 648 (729)
.+....+++.+|.++... |++++|+..|++++.. +|.... + ...+
T Consensus 103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345788899999876 7899999999999987 444322 1 2467
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|.+|...|++.+|+..|++++..+ +.+|....+++.+|.++...|++++|. .+++.+....|+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~~ 235 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYPD 235 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 889999999999999999999875 556888999999999999999999999 999988877664
No 95
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.47 E-value=5.6e-12 Score=125.80 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+..+...|..|...+++++|.+.|.++.......++....+..+...+.+|... ++++|+.+|++++.++...+ ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence 445666778888899999999999999998888888888888888888888666 99999999999999998775 345
Q ss_pred hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
..+.++..+|.+|... |++++|+.+|++|+++++.. ........++..+|.++...|+|++|++.|++........
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 6688999999999999 99999999999999999873 3466678889999999999999999999999988765433
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS 628 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 628 (729)
..........+...+.+++..|++..|...+++.....+.... ......+..|-.++.. ...+..|+.-|.....
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2223344455677888999999999999888887654322222 2234556666666654 3467888888877766
Q ss_pred H
Q 004812 629 I 629 (729)
Q Consensus 629 ~ 629 (729)
+
T Consensus 266 l 266 (282)
T PF14938_consen 266 L 266 (282)
T ss_dssp -
T ss_pred c
Confidence 6
No 96
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=4.7e-09 Score=107.66 Aligned_cols=450 Identities=14% Similarity=0.115 Sum_probs=270.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
..+|+.....+..+|+ ...-...|.+||..++.. .| ..+|-..-......|-.+-++..|++-|++.
T Consensus 102 pRIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----qH---~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----- 168 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----QH---DRIWDLYLKFVESHGLPETSIRVYRRYLKVA----- 168 (835)
T ss_pred CHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----hh---ccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----
Confidence 3456666667777776 788888888888764322 11 1112222222333444556666666666554
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------------HHHhC
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------------------------------KQVLG 343 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------------------~~~~~ 343 (729)
|... -.....+...+++++|.+.|...+..- +.-++
T Consensus 169 P~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 169 PEAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred HHHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 1111 112233344455555554444433210 00011
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH---------------------------HHHHHH-
Q 004812 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL---------------------------EEAADR- 395 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------------~~a~~~- 395 (729)
.-.......|..||..|...|.+++|...|++++...-...+-..+ +....-
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 1123466788999999999999999999999987643221110000 000000
Q ss_pred -----------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004812 396 -----------------------------RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446 (729)
Q Consensus 396 -----------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 446 (729)
..+-.+-...|+..+-+..|..|+...............|..+|.+|...|
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 001112223456677777777776544333334445678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC---CCCChHH------HH
Q 004812 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV---PGVPPEE------IA 517 (729)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~------~~ 517 (729)
+.+.|...|+++...--. .-.+.+.+|...|..-....+++.|+.+.++|...-.... .....|- ..
T Consensus 402 ~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred cHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 999999999999886211 1245588999999999999999999999999876532210 0111111 23
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.+|..++.+....|-++.....|++.+++.-.. ..+..+.|..+....-+++|.+.|++.+.+++ .+
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p 544 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFK------WP 544 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------Cc
Confidence 456666777777777777778888887775443 35567888888888899999999999988753 12
Q ss_pred HHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 004812 598 FFGVALNQ---MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVG--- 670 (729)
Q Consensus 598 ~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~--- 670 (729)
..-.+|+. ....-+..-..+.|..+|++|++.+ .|.... +|...|.+-..-|--..|+..|++|-.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 23333332 2222233347899999999999863 234333 455556666667777777777777532
Q ss_pred -------------HHHHHcCC--------------CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 671 -------------IREEKLGT--------------ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 671 -------------~~~~~~~~--------------~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
-...++|. .+........+.|.+-...|..+.|. ..|.-.-++.
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~sq~~ 688 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGSQIC 688 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhhhcC
Confidence 12223332 12233344556677777778888887 7666555554
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=3.1e-11 Score=118.03 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.......++.+|..+...|++++|+..|++++... ++++....+++.+|.++...|++++|+..|+++++....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence 44556788999999999999999999999998872 224455578899999999999999999999999998433
Q ss_pred CCCCChHHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
.+....+++.+|.++... |++++|+..|++++...+.... ...++..++...
T Consensus 103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~----------- 162 (235)
T TIGR03302 103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLR----------- 162 (235)
T ss_pred -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHH-----------
Confidence 444456788899999876 8999999999999988765411 011111111111
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004812 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
.. .......+|.+|...|++.+|+..|++++.. .+++|....+++.+|.++..+|+++
T Consensus 163 ------~~-----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 163 ------NR-----------LAGKELYVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred ------HH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHH
Confidence 00 1123346788999999999999999999987 2335667789999999999999999
Q ss_pred HHHHHHHHHHH
Q 004812 660 DAIEILEFVVG 670 (729)
Q Consensus 660 ~A~~~~~~al~ 670 (729)
+|..+++....
T Consensus 221 ~A~~~~~~l~~ 231 (235)
T TIGR03302 221 LAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHh
Confidence 99998887664
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=1.5e-10 Score=122.53 Aligned_cols=290 Identities=13% Similarity=0.066 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
+++-.+.++...|++++|+.++.+.... -.+....+-..|.++..+|++++|...|...++..|++..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~---- 73 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD---- 73 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----
Confidence 4666788899999999999999886555 4677888999999999999999999999999999887642
Q ss_pred HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhCCC--------------------------ChhHHHHHHHH
Q 004812 390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQ--------------------------DAEVASVDCSI 438 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~l 438 (729)
.+..+..+.... .+.+.-...|++....+..... ...+..+..++
T Consensus 74 ----Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l 149 (517)
T PF12569_consen 74 ----YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL 149 (517)
T ss_pred ----HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 234444443222 1344445555543222111000 00011122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhc----C--------CCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNK----G--------ENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~----~--------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
-.+|. +..++.- +...+.-+.... . ...| ...++++.+|+.|...|++++|+.++++|++.
T Consensus 150 k~Ly~---d~~K~~~-i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 150 KPLYK---DPEKAAI-IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHc---ChhHHHH-HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 22332 2222221 222222211111 0 0122 23578899999999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
.|..+..|...|.++...|++.+|...++.|..+.... -.+....+..+++.|+.++|...+....
T Consensus 224 -------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 224 -------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred -------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 56678899999999999999999999999999886544 2344567888899999999988776543
Q ss_pred HHHH-HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 586 SKLR-AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 586 ~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.--. ...+-......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 2110 0000011123445566799999999999999999999999888654
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=6.1e-09 Score=106.81 Aligned_cols=330 Identities=14% Similarity=0.117 Sum_probs=220.5
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004812 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (729)
+|.....|..... +..|+..+-+..|.+|+...........+ ...|..+|..|...|+.+.|...|+++... ..
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y 418 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY 418 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence 5666666665544 44688888999999988754333323333 356889999999999999999999998753 12
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCChh------HHHHHHHHHHHHHHcCCHHHHHH
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHPA------VASVFVRLADMYNRTGKLRESKS 495 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~ 495 (729)
+...+.+.+|+..|..-....+++.|+.+.++|..+-.. .....+|. ...+|..++.+....|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 234566889999999999999999999999988764221 11111222 34566777888888899999999
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHHHHHHcC
Q 004812 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA---QMGVMYYMLG 572 (729)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~la~~~~~~g 572 (729)
.|++.+++--. ...+..+.|..+....-+++|.+.|++.+.+++- +....+|. .....-+.--
T Consensus 499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-----p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-----PNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC-----ccHHHHHHHHHHHHHHHhcCC
Confidence 99999988322 3456778888888888899999999998887642 22233333 2222223334
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------HHHHhcCC
Q 004812 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS----------------ILEQECGP 636 (729)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~~~~~~~ 636 (729)
..+.|..+|++|++.++ +...-.++...+.+-..-|-...|+..|++|-. ....++|.
T Consensus 565 klEraRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 78899999999998543 222233455556665666666666666666532 12222332
Q ss_pred --------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCHh
Q 004812 637 --------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 637 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~ 701 (729)
.+..........|.+-...|..+.|...|..+-+++ +|. ....|...-..-.+.|+-+
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~-------dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC-------DPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC-------CCcCChHHHHHHHHHHHhcCCHH
Confidence 123333455677888889999999999999888875 333 3455555667778889844
Q ss_pred HHHHHHHH
Q 004812 702 SRKAQSLE 709 (729)
Q Consensus 702 ~A~~~~l~ 709 (729)
.-. +.|+
T Consensus 712 T~k-eMLR 718 (835)
T KOG2047|consen 712 TYK-EMLR 718 (835)
T ss_pred HHH-HHHH
Confidence 433 4443
No 100
>PLN02789 farnesyltranstransferase
Probab=99.42 E-value=5.5e-11 Score=119.04 Aligned_cols=208 Identities=15% Similarity=0.033 Sum_probs=169.9
Q ss_pred HHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004812 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (729)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (729)
+...+.+++|+..+.+++.+. +.+ ..+|...+.++..+| ++++++.++.+++.. +|....+|
T Consensus 47 l~~~e~serAL~lt~~aI~ln-----P~~----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW 109 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-----PGN----YTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIW 109 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-----chh----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHh
Confidence 445678899999999999886 333 346889999999998 689999999999988 78888999
Q ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004812 354 RYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 354 ~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
...+.++...|+. ++++.++.+++++.+++. .+|...+.++...|+++++++++.+++.. ++..
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N 175 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--------HAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRN 175 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCc
Confidence 9999999888874 788999999999887764 57999999999999999999999999864 4555
Q ss_pred HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004812 432 ASVDCSIGDTYLSL---SRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENA 500 (729)
Q Consensus 432 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 500 (729)
..+|+.++.++... |.+ ++++.+..+++.+ .|....+|..++.++.. +++..+|+..+.++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 67888888888765 333 4688888899888 78899999999999988 45567788888887
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 004812 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (729)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (729)
+.. .+....++..|+.+|...
T Consensus 248 ~~~---------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSK---------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcc---------cCCcHHHHHHHHHHHHhh
Confidence 664 333456788888888753
No 101
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.3e-07 Score=94.17 Aligned_cols=464 Identities=12% Similarity=0.066 Sum_probs=294.1
Q ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHH-HcCChHHHHHHHHHhcccch
Q 004812 220 LGPLLLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 296 (729)
.+.+++.+|..+...+ + ..++|.+.+..... ..+..-.+.+...+|.+++ ...+++.|...+++|..+..
T Consensus 6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~ 78 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK 78 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4667889998887777 4 56666665544332 2222344677777887764 57889999999999998764
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004812 297 IEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQ 374 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 374 (729)
..+. .....+.+...|+.+|.... .+..|...+++++++.+. .| ......+.|+.++....++..|.+.+.
T Consensus 79 ~ip~--fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~-----~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 79 SIPS--FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS-----VPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred cccc--HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 3322 22446677888999999887 889999999999999654 23 234567889999999999999998843
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH---H-HHHHHHHHH-HHHcCC
Q 004812 375 MALDIHKDNGSPASLEEAADRRLM--GLICETKGDHEAALEHLVLASMTMIANDQDAEV---A-SVDCSIGDT-YLSLSR 447 (729)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~-~~~~~la~~-~~~~g~ 447 (729)
-.... .+........+++.+ +.++....+..+.......+-.+......++.. . ..|..+-.+ |...|+
T Consensus 152 vga~s----Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq 227 (629)
T KOG2300|consen 152 VGAES----ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQ 227 (629)
T ss_pred ccccc----cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 33222 222112222233333 334444445555555555554444433333322 1 122333333 445677
Q ss_pred HHHHHHHHHHHHHHHHHhc-----------CCCChhHH--------HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhc
Q 004812 448 YDEAGFAYQKALTAFKTNK-----------GENHPAVA--------SVFVRLADM--YNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~-----------~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
...+...+++.-.....+. +.+.+... .++..+-.+ -...|-+++|.++-++++...++
T Consensus 228 ~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ek 307 (629)
T KOG2300|consen 228 VRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEK 307 (629)
T ss_pred hhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 7777666664433322221 11112111 111111111 12357788999999999888666
Q ss_pred CCCCC-ChH----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHH
Q 004812 507 PVPGV-PPE----EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSY 578 (729)
Q Consensus 507 ~~~~~-~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~ 578 (729)
....+ ..+ .....+-.++.+-.-.|++.+|++....+.+.+...++.. ...+.+...+|......+.++.|.
T Consensus 308 lkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe 387 (629)
T KOG2300|consen 308 LKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAE 387 (629)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHH
Confidence 42111 111 1233455667777789999999999999999998876632 234566777888888899999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--h-----hHHHHHHHHHHH
Q 004812 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH--P-----DTLGVYSNLAGT 651 (729)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~-----~~~~~~~~la~~ 651 (729)
..|..|.+.... ....+.+-.++|..|.+.|+-+.-. ++++. + ++.+ + ....+++..|..
T Consensus 388 ~hf~~a~k~t~~-----~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~---i-~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 388 FHFIEATKLTES-----IDLQAFCNLNLAISYLRIGDAEDLY----KALDL---I-GPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred HHHHHHHHhhhH-----HHHHHHHHHhHHHHHHHhccHHHHH----HHHHh---c-CCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999887543 2335677788999999987654332 23322 1 2211 1 123466777888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...++++.||...+.+.+++.... ..+.-....+..|+.+....|+..++. +...-++++...
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~-nmvrpamqlAkK 517 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR-NMVRPAMQLAKK 517 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH-hccchHHHHHhc
Confidence 889999999999999999875211 112233455677899999999999999 888877776543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2e-09 Score=100.10 Aligned_cols=225 Identities=17% Similarity=0.174 Sum_probs=170.4
Q ss_pred HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004812 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
.+..+|..|++++..-.+.. + .....+..||.||+...+|..|..+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~-----p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERS-----P----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcC-----c----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 66778999999887766553 1 12335888999999999999999999998877 6888888899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004812 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
.|..+++.+.+..|+.......+.. .....++..-+.+.+..+++..+....++. .....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~--------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNP--------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence 9999999999999998876655421 111234556677777888888887776643 112456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC------
Q 004812 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP------ 509 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 509 (729)
.+.|.+.++.|+++.|++-|+.+++. ....+..-++++.++++.++++.|+++..+.++.--+..|
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 3445566789999999999999999999888775433211
Q ss_pred ---CC-----------ChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004812 510 ---GV-----------PPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (729)
Q Consensus 510 ---~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (729)
+. .......+++..+.++++.++++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 00 012245567777888999999998876654
No 103
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.38 E-value=6.7e-11 Score=118.09 Aligned_cols=229 Identities=15% Similarity=0.126 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Q 004812 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (729)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (729)
.+..+...|.+|...++|++|...|.++.+....... ....+..+...+.++... ++++|+.+|++++.++...+..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 4556677788889999999999999999999887553 355567777777777666 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 429 AEVASVDCSIGDTYLSL-SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|+..|++........
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 999999999999999998765 234566788899999999999999999999988764321
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNAI 585 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 585 (729)
.......-..+...+.++...|++..|...+++.....+...+ ..-..+...|-..+.. ...+..|+.-|....
T Consensus 189 --~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 189 --NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp --CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred --cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1112334455677888999999999999999888776654422 2223444455555443 345777777776544
Q ss_pred H
Q 004812 586 S 586 (729)
Q Consensus 586 ~ 586 (729)
.
T Consensus 265 ~ 265 (282)
T PF14938_consen 265 R 265 (282)
T ss_dssp -
T ss_pred c
Confidence 4
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=2.1e-08 Score=97.89 Aligned_cols=304 Identities=14% Similarity=0.101 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004812 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
....-|..-...|+|.+|+....++-+..+.. ..++..-+.....+|+++.|-.++.++-+. . ....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--------~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~--~~~~ 152 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--------VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---A--GDDT 152 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--------HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---C--CCch
Confidence 34444555667799999999988865544322 345667778889999999999999887532 1 1223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
......++.+....|+++.|.....+++++ .|....++.....+|...|++.+...++.+..+. +.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka------~~ 218 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA------GL 218 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc------cC
Confidence 456677899999999999999999999998 7888899999999999999999998888776554 11
Q ss_pred ChHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 512 PPEEIASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 512 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
-......-+-+.+.. +....+-..+.. +....+-.++..... ..+...++.-+...|++++|.+..+++++...
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 122222223222222 111222222222 112222222221122 24455678889999999999999999887521
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
+ ......+ -...-+++..=++..++.++. +|+....+..||.+|.+.+.|.+|..+|+.++
T Consensus 295 ---D------~~L~~~~--~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 295 ---D------PRLCRLI--PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred ---C------hhHHHHH--hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 1111111 233557788888888888887 88888999999999999999999999999998
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
... .....+..+|.++.++|+..+|. +.+++++.+.
T Consensus 356 ~~~---------~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~~~ 391 (400)
T COG3071 356 KLR---------PSASDYAELADALDQLGEPEEAE-QVRREALLLT 391 (400)
T ss_pred hcC---------CChhhHHHHHHHHHHcCChHHHH-HHHHHHHHHh
Confidence 752 33567888999999999999999 9999988543
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1e-07 Score=100.46 Aligned_cols=425 Identities=17% Similarity=0.126 Sum_probs=235.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD 346 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 346 (729)
.|-..|...|.|++|.++.+.--++. .-..|++.|..+...++.+.|+++|+++-.....+ +.+ +
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiH-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~ 898 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIH-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-Y 898 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhcccee-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-C
Confidence 45566777788888777665433332 12358899999999999999999999863221111 111 1
Q ss_pred ch----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHHH
Q 004812 347 PR----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-------------ASLEEAADRRLMGLICE 403 (729)
Q Consensus 347 ~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~a~~~~~lg~~~~ 403 (729)
|. ....|...|..+...|+.+.|+.+|..|-+.+....-. .....-.+.+.||+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 21 22466778898999999999999998886654321100 00001246788999999
Q ss_pred HhCCHHHHHHHHHHH------HHHHHhCCCChhHHHH--------HHHHHHHHHHcC-CHHHHHHHHHHH------HHHH
Q 004812 404 TKGDHEAALEHLVLA------SMTMIANDQDAEVASV--------DCSIGDTYLSLS-RYDEAGFAYQKA------LTAF 462 (729)
Q Consensus 404 ~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~--------~~~la~~~~~~g-~~~~A~~~~~~a------l~~~ 462 (729)
..|++.+|+.+|.+| +++.+.++-....+.. ....|..|...| .++.|...|.+| ++++
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 999999999998776 3444444332222211 123355566666 666777666543 3322
Q ss_pred HHhc----------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHhcCC------------CC----
Q 004812 463 KTNK----------GENHPAVASVFVRLADMYNRTGKLRESKSYC------ENALRIYEKPV------------PG---- 510 (729)
Q Consensus 463 ~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~---- 510 (729)
-... +-+....+..+..-+..+....+|++|..++ +.|+.++.... +.
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCC
Confidence 1111 0012233556677788889999999998765 45555543321 11
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-----CCCCC---------cHHHHHHHHHHHHHHcCCHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA-----PGQQS---------TVAGIEAQMGVMYYMLGNYSD 576 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~---------~~~~~~~~la~~~~~~g~~~~ 576 (729)
.+......++..+|.++.++|.|..|-+-|.+|-...... .|+.. ..-.+ +.+|.-|+..-+|..
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi-YImAANyLQtlDWq~ 1217 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI-YIMAANYLQTLDWQD 1217 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee-eeehhhhhhhccccc
Confidence 1223456788899999999999999998888764433211 02111 00111 123344444444443
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHH
Q 004812 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV--------QRYSINEAVELFEEARSILEQECGPYHPDTL--GVYS 646 (729)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~ 646 (729)
--+.++..+..+.+ ..++-.||..|. ...+|++|.-.+++|.+-+.+....++.... ....
T Consensus 1218 ~pq~mK~I~tFYTK---------gqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~ 1288 (1416)
T KOG3617|consen 1218 NPQTMKDIETFYTK---------GQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQE 1288 (1416)
T ss_pred ChHHHhhhHhhhhc---------chhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 33333333332211 122233333322 2345666666666655544433221111111 1111
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 647 NLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 647 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++.+-.. +--.+++..-..++-.+.++-.-++--...+.+..|.+.+....+|..|. ..++.+-...|.
T Consensus 1289 ~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1289 DLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence 22222111 11112333333333333332211222234566777888899999999999 999999888887
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.31 E-value=2.1e-10 Score=126.72 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=193.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004812 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
+.-+|....++..|...+...+++++|+..++.+++..|... ..++.+|.++...+++..+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh--------
Confidence 344688999999999999999999999999999999887765 4588999999999986666543
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
.++.......++ .++.++...+.. .+..-.+++.+|.||.++|++++|...|+++++
T Consensus 88 --------------~~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 88 --------------NLIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred --------------hhhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 233344444455 344444433332 355556888999999999999999999999998
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
+ ++..+.+++++|..|... ++++|+.++.+|+..+-+. ........+|.. .+.....+++.=..+.+
T Consensus 145 ~---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~ 211 (906)
T PRK14720 145 A---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIER 211 (906)
T ss_pred c---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHH
Confidence 8 455678899999999888 9999999999988875543 111122222211 12222223332222222
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004812 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
+.+.. .+ .......+.-+-..|...++|++++.+++.++++ +|....+...|+.+|. +.|.. .
T Consensus 212 ki~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~ 274 (906)
T PRK14720 212 KVLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-H 274 (906)
T ss_pred HHHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-c
Confidence 22221 11 1123455666678888999999999999999999 8888889999999998 55544 5
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 663 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..|+.++++. .+-.....+..++ ..|++.+..++.
T Consensus 275 ~~~ee~l~~s-------------------~l~~~~~~~~~~i-~~fek~i~f~~G 309 (906)
T PRK14720 275 SLLEDYLKMS-------------------DIGNNRKPVKDCI-ADFEKNIVFDTG 309 (906)
T ss_pred chHHHHHHHh-------------------ccccCCccHHHHH-HHHHHHeeecCC
Confidence 5666666542 1111123456667 777777776665
No 107
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.30 E-value=2.9e-06 Score=94.43 Aligned_cols=476 Identities=13% Similarity=0.046 Sum_probs=292.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+.+.+.+|..++..-+|++.|..++++++.+.++. .-. .....+...++.+|.+.+... |...++++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence 4577889999999988788999999999999887551 111 223455667799999888877 99999999987632
Q ss_pred ccccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004812 299 EGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-VGETCRYLAEAHVQALQFSEAQKFCQM 375 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (729)
..+.. +...+.+ ...+...+++..|+..++......... .++. ...+....+.++...+..+++++.+++
T Consensus 132 --~~~~~--w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 132 --YGHSA--WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred --cCchh--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 11111 1112222 223333379999999999998886532 1222 233444556677777888899999998
Q ss_pred HHHHHHhc--CCCCCHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHhCCCCh----------------------
Q 004812 376 ALDIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA---------------------- 429 (729)
Q Consensus 376 al~~~~~~--~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------- 429 (729)
+....... .+...+....++..+-. ++...|++..+...+++.-..+......+
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 87766543 11113333344444443 45667887787777665543333221111
Q ss_pred --------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCh---------------hHHHHH
Q 004812 430 --------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENHP---------------AVASVF 477 (729)
Q Consensus 430 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~ 477 (729)
..+-+|..-|......+..++|.+++.++++..++... ...+ ....++
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 11233444466667778888999999999999887661 1000 122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC----
Q 004812 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---- 553 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 553 (729)
..++.+.+-.+++..|...+..+.....+.............++..|..+...|+.+.|+.+|.+..-........
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 5667777889999999999999888866532111233456778889999999999999999998655333222111
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL 630 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~ 630 (729)
......+..++..++...+.-.....-+.+.++..... ..........++..+-.++. ..-...++...+.++++..
T Consensus 445 ~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~ 524 (608)
T PF10345_consen 445 RELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMA 524 (608)
T ss_pred hHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Confidence 12223334566677766655433222233333322221 11111222222222222221 2224458999999999987
Q ss_pred -HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH---HHHHHHHHHHHhCCHhHHHHH
Q 004812 631 -EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD---EKRRLAELLKEAGRVRSRKAQ 706 (729)
Q Consensus 631 -~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~---~~~~La~~~~~~g~~~~A~~~ 706 (729)
..... ..-...++..++..+. .|+..+.......+..+..+. ++..+... +-..++..+...|+.++|. .
T Consensus 525 ~~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~ 598 (608)
T PF10345_consen 525 NNKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-E 598 (608)
T ss_pred HHhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-H
Confidence 44322 2333335556666666 899999888888888877654 11222222 3346777799999999998 7
Q ss_pred HHHHHH
Q 004812 707 SLETLL 712 (729)
Q Consensus 707 ~l~~al 712 (729)
...+.-
T Consensus 599 ~~~~~~ 604 (608)
T PF10345_consen 599 ARQQLD 604 (608)
T ss_pred HHHHHH
Confidence 666553
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=9.2e-09 Score=100.34 Aligned_cols=301 Identities=17% Similarity=0.073 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcccc
Q 004812 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (729)
.....|-.-+..|+ |.+|.....++-+. .+.| ..+|..-+.+...+|+++.|-.++.++-+.. .+
T Consensus 86 ~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~ 150 (400)
T COG3071 86 KALNEGLLKLFEGD-FQQAEKLLRRNAEH-------GEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD 150 (400)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------Ccch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence 44455666667776 77777766665432 2223 4567777888899999999999999998873 11
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+ ...+....+.+....|+++.|..-..+++.. .|....++.....+|...|+|.....++.+.-+..--
T Consensus 151 ~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 151 D---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1 3345888999999999999999999999988 6888899999999999999999998887765443211
Q ss_pred cCCCCCHHHHHHHHHHHHH--HHHhCCHHHHH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 383 NGSPASLEEAADRRLMGLI--CETKGDHEAAL---EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~lg~~--~~~~g~~~~A~---~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (729)
. ......+...+.. .....+-..+. .+++.. -.....+| .+...++.-+..+|+.++|.+..++
T Consensus 220 ~-----~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 220 S-----DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred C-----hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1 1111222222211 11222222222 233221 11122233 3345567788999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004812 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (729)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (729)
+++... ++. ....++ ...-++...=++..++.++. ++.....+..||.++.+.+.|.+|.
T Consensus 289 ~Lk~~~------D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 289 ALKRQW------DPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHHhcc------Chh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHHH
Confidence 988611 222 111111 23457777777778888777 3333478999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
.+|+.++...+.. ..+..+|.++.++|+..+|...+++++.+.
T Consensus 349 ~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 349 EALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999998876543 567889999999999999999999998554
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=5.6e-09 Score=97.23 Aligned_cols=394 Identities=13% Similarity=-0.020 Sum_probs=233.5
Q ss_pred cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004812 198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277 (729)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 277 (729)
....+|..+|+.+.......|.....+-.+|.+|+...+ |..|.++|++.-..+ |.........+..+++
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHH
Confidence 444556666666666666777777777888888888876 888888887766554 3344445556777788
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004812 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (729)
.+.+..|+.......... ...-.++..-+.+.+..+++..+....++. . ....+....+.|
T Consensus 91 A~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~Ad~~in~g 151 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENEADGQINLG 151 (459)
T ss_pred hcccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCccchhccch
Confidence 888888887776654321 111223344455555666666555444331 1 124566778888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC------------
Q 004812 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN------------ 425 (729)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 425 (729)
.+.++.|+++.|++-|+.+++...-.. ..-++++.++++.++++.|+++..+.+..-.+.
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 889999999999999999988764332 236778899999999999998887665432111
Q ss_pred ------CCC-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 426 ------DQD-----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 426 ------~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
++. .....+++..+.++++.++++.|.+.+...--..+ +...+..+.+++..-. .+++.+..
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE------~elDPvTLHN~Al~n~-~~~p~~g~ 296 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE------EELDPVTLHNQALMNM-DARPTEGF 296 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc------ccCCchhhhHHHHhcc-cCCccccH
Confidence 000 12234555667788888888888765543211111 2233456666665433 35566666
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHH-HHcC
Q 004812 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMY-YMLG 572 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~-~~~g 572 (729)
.-+.-.+.+. |.-..++.++-.+|++..-|+-|...+ ...+.... .+...++.+-..+ ..+-
T Consensus 297 ~KLqFLL~~n---------PfP~ETFANlLllyCKNeyf~lAADvL-------AEn~~lTyk~L~~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 297 EKLQFLLQQN---------PFPPETFANLLLLYCKNEYFDLAADVL-------AENAHLTYKFLTPYLYDLLDALITCQT 360 (459)
T ss_pred HHHHHHHhcC---------CCChHHHHHHHHHHhhhHHHhHHHHHH-------hhCcchhHHHhhHHHHHHHHHHHhCCC
Confidence 5555555551 112345566667777766555554443 22211111 1122223333322 3345
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM-GLACVQR-----YSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (729)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (729)
..++|.+-+......+.. -+..+ +.+.... .....|++-|++++++ ...++.
T Consensus 361 ~pEea~KKL~~La~~l~~-----------kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----------YLPVlM 418 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTE-----------KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----------YLPVLM 418 (459)
T ss_pred CHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 666776655544332111 11111 1111111 1234566667777665 233677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
..|++|+...+|.-+.+.|+..++.+.
T Consensus 419 a~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 419 AQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHhhccccccHHHHHHHHHHHhhhc
Confidence 889999999999999999999998873
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=1.3e-10 Score=102.83 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004812 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616 (729)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 616 (729)
..+|++++++.+.. +..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 35677888776543 456899999999999999999999876 233568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004812 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 696 (729)
++|+..|++++.+ +|....+++++|.++..+|++++|+..|++++.+ .|+....+..++.+...
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 9999999999998 8999999999999999999999999999999987 57777777777776554
Q ss_pred h
Q 004812 697 A 697 (729)
Q Consensus 697 ~ 697 (729)
.
T Consensus 139 l 139 (144)
T PRK15359 139 V 139 (144)
T ss_pred H
Confidence 3
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.23 E-value=1.3e-10 Score=102.91 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004812 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
..+|++++++-+ ..+..+|.++...|++++|+.+|++++.+ +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~~p-----------~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSVDP-----------ETVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHcCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 456777777521 12556899999999999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++|+..|++++.+ +|....+++++|.++...|++++|+ ..|+.++.++|+
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~ 124 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 99999999999986 6889999999999999999999999 999999999997
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-07 Score=99.30 Aligned_cols=342 Identities=15% Similarity=0.138 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 004812 222 PLLLKQARELISSGDNPQKALELAL--------RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~--------~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (729)
.+|-.+|....+..+ .+-|.-+.- +|++..++. +. .. -...|.+...+|-.++|..+|++.-+
T Consensus 758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~--~~--e~----eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQN--GE--ED----EAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhC--Cc--ch----hhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666666666665 666655432 233322222 11 11 12245566778888999998888653
Q ss_pred cchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004812 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (729)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (729)
. -.|-..|...|.+++|.+..+.- +.-.....|++.|..+...++.+.|+++|
T Consensus 829 ~-----------------DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 829 Y-----------------DLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred H-----------------HHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3 33556788888888887765432 12345678999999999999999999999
Q ss_pred HHHHH----HHHhcCCC-CCH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004812 374 QMALD----IHKDNGSP-ASL-------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 374 ~~al~----~~~~~~~~-~~~-------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
+++-. +.+-..+. ..+ .....|...|......|+.+.|+.+|..|.. |+.+-.+
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------------~fs~VrI 947 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------------YFSMVRI 947 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------hhhheee
Confidence 87622 11110000 000 0013466778888888888888888877642 3334444
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHhcCCCCCChHH
Q 004812 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL------RIYEKPVPGVPPEE 515 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~ 515 (729)
.+.+|+.++|..+.++. ....+.+.||+.|...|++.+|+.+|.+|. +++++.. -...
T Consensus 948 ~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~ 1011 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR 1011 (1416)
T ss_pred EeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH
Confidence 44455555444332221 112344556666666666666666555433 2222210 0000
Q ss_pred HHH--------HHHHHHH--------------HHHhcchHHHHHHHHH-----HHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004812 516 IAS--------GLTDVSS--------------IYESMNELEQAIKLLQ-----KALKIYNDAPGQQSTVAGIEAQMGVMY 568 (729)
Q Consensus 516 ~~~--------~~~~la~--------------~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~~~~~~~~la~~~ 568 (729)
.+. -+...|. +|.+.|.+.+|+++.- .++++........ .-+.++..-+..+
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~-sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG-SDPKLLRRCADFF 1090 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC-CCHHHHHHHHHHH
Confidence 000 0111222 3334444444443321 1344444332222 2245667778888
Q ss_pred HHcCCHHHHHHHHH------HHHHHHHHhCC-----------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 569 YMLGNYSDSYDSFK------NAISKLRAIGE-----------------RKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (729)
Q Consensus 569 ~~~g~~~~A~~~~~------~al~~~~~~~~-----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (729)
....+|++|..++- .|+.++...+- .+......++..+|.++.++|.|-.|.+-|.+
T Consensus 1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 88889999877654 45554432111 11122345788999999999999999999888
Q ss_pred HHHHH
Q 004812 626 ARSIL 630 (729)
Q Consensus 626 al~~~ 630 (729)
|-..+
T Consensus 1171 AGdKl 1175 (1416)
T KOG3617|consen 1171 AGDKL 1175 (1416)
T ss_pred hhhHH
Confidence 75543
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.1e-08 Score=93.55 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
+.++-+++....+.........++...++-.+..+....|+.+-|..++++.... .|....+...-|..+..
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEA 98 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHH
Confidence 4556666666555444333345566667777888888999999999998887666 46666777788999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004812 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
.|++++|+++|+..++- +|....++-..-.+...+|+.-+|++.+..-++.+... ..+|..++.
T Consensus 99 ~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLae 162 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELAE 162 (289)
T ss_pred hhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHHH
Confidence 99999999999998775 34445556666667788899999999999999988766 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
+|+..|+|++|.-++++.+=+ .|+....+..+|.+++-+| ++.-|.++|.+++++ .|....
T Consensus 163 iY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~r 226 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLR 226 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHH
Confidence 999999999999999998865 3445677888888888776 678899999999999 777777
Q ss_pred HHHHHHHHHHH
Q 004812 644 VYSNLAGTYDA 654 (729)
Q Consensus 644 ~~~~la~~~~~ 654 (729)
+++.+-.+...
T Consensus 227 al~GI~lc~~~ 237 (289)
T KOG3060|consen 227 ALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.20 E-value=1.5e-09 Score=101.47 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.++.++++..+++++... +.....|..+|.+|...|++++|+..|++++.+ .|+...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~--------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 566788888888888752 224678999999999999999999999999999 8889999999999
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 651 TY-DAIGR--LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 651 ~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++ ...|+ +++|...++++++. +|....+++.||..+...|++++|+ ..++++++++|.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~ 176 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP 176 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 74 67787 59999999999987 7888999999999999999999999 999999999986
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.20 E-value=1.4e-09 Score=119.69 Aligned_cols=156 Identities=11% Similarity=0.003 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004812 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
+....+...+-+++.+.+. .+....++.+||.+....|.+++|..+++.++++.|+. ..+...++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~ 129 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRG 129 (694)
T ss_pred hhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHH
Confidence 3334444444455555433 33447889999999999999999999999999998877 5788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
+.+.+++++|+..+++++.. .+..+.+++.+|.++.+.|++++|+.+|++++.- +|+...++..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 99999999999999999886 2335688999999999999999999999999986 8888899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 648 LAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999875
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=5.6e-09 Score=109.06 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC----------CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004812 236 DNPQKALELALRAAKSFEIGAN----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 236 ~~~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
+-.+.+...-+.+.+.++.... ...-|.....-..++..+...|-...|+..|++.-
T Consensus 359 RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle------------- 425 (777)
T KOG1128|consen 359 RTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE------------- 425 (777)
T ss_pred cchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------
Confidence 3355666555555554433211 11224556667788999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.|.....||...|+..+|..+..+-++. +..+..|..+|.+..... +|+++.++.....
T Consensus 426 ----mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d~s-------~yEkawElsn~~s- 484 (777)
T KOG1128|consen 426 ----MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHDPS-------LYEKAWELSNYIS- 484 (777)
T ss_pred ----HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccChH-------HHHHHHHHhhhhh-
Confidence 3677889999999999999888776653 445566677776665544 4445544443322
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
+.+...+|......++|.++..+++..+.+ .+.....|+.+|.+..+.+++..|...|..++.+
T Consensus 485 ------arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---- 548 (777)
T KOG1128|consen 485 ------ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---- 548 (777)
T ss_pred ------HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----
Confidence 234566777777889999999999988764 6777789999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.|+...+|++++..|...++-.+|...+.+|++.- .....+|.|.-.+....|.+++|++.|.+.+.
T Consensus 549 ----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---------~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 ----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---------CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999983 22355677888888999999999999999998
Q ss_pred HHHhCC
Q 004812 546 IYNDAP 551 (729)
Q Consensus 546 ~~~~~~ 551 (729)
+.....
T Consensus 616 ~~~~~~ 621 (777)
T KOG1128|consen 616 LRKKYK 621 (777)
T ss_pred hhhhcc
Confidence 877654
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.19 E-value=3.1e-09 Score=117.65 Aligned_cols=237 Identities=13% Similarity=0.028 Sum_probs=171.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004812 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
++.-.|....++..++..+...++ +++|+..++.+++.. |.....|+.+|.++++.+++.++... .++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 445678899999999999989987 999999999888764 55677889999999999999988877 666
Q ss_pred ccchhhccccch----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004812 293 EIPVIEEGQEHA----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (729)
Q Consensus 293 ~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (729)
.+........-. ...-.+++.||.||..+|++++|...|++++++ +|..+.++.++|..|..
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE 162 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence 664221100000 001136899999999999999999999999999 79999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004812 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
. ++++|+.++.+|+...-........ -.. ....+...-.+++.-....++... .-........+.-+=..|
T Consensus 163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~e~--W~k~~~~~~~d~d~f~~i~~ki~~----~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFIKKKQYVGI--EEI--WSKLVHYNSDDFDFFLRIERKVLG----HREFTRLVGLLEDLYEPY 233 (906)
T ss_pred h-hHHHHHHHHHHHHHHHHhhhcchHH--HHH--HHHHHhcCcccchHHHHHHHHHHh----hhccchhHHHHHHHHHHH
Confidence 9 9999999999999876443321111 001 111222222333333333332221 111333445566667888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
...++|++++.+++.++++ .+....+...++.+|..
T Consensus 234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYKE 269 (906)
T ss_pred hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHHH
Confidence 9999999999999999998 77788888999998873
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.18 E-value=1.7e-09 Score=119.09 Aligned_cols=158 Identities=14% Similarity=0.091 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004812 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
+....+...+-+++.+..+.+ ....++..||.+....|.+++|..+++.++++. +....++..++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L 130 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRRYP----HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV 130 (694)
T ss_pred hhhcchHhhHHHHHHHHHhcc----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence 333344444444555444432 225788999999999999999999999999973 23567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004812 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 690 (729)
.+.+++++|+..+++++.. .|+...+++.+|.++.++|++++|+.+|++++.- +|+...++..+
T Consensus 131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~ 194 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGW 194 (694)
T ss_pred HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHH
Confidence 9999999999999999999 8999999999999999999999999999999963 78999999999
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 691 AELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|.++...|+.++|. ..|+++++...+
T Consensus 195 a~~l~~~G~~~~A~-~~~~~a~~~~~~ 220 (694)
T PRK15179 195 AQSLTRRGALWRAR-DVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence 99999999999999 999999988765
No 119
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.13 E-value=4e-05 Score=85.44 Aligned_cols=441 Identities=14% Similarity=0.082 Sum_probs=274.4
Q ss_pred HhHHHHHHHHHHHHH-HcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 262 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
...+.++..+|.+++ ...++++|..++++++.+... ..-....+.+.+.++.++...+... |...++++++..+.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 445778889999988 688999999999999988743 2233345667788899999998888 99999999998755
Q ss_pred HhCCCCchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004812 341 VLGETDPRVGETCRYL-AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 419 (729)
. .+.....++..+ ...+...+++..|++.++.........+++ ...+.+....+.++...+..+.+++.++++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 1 111222333333 333333479999999999999988755543 3344556666778888898999999998886
Q ss_pred HHHHhC----CCChhHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C----------------
Q 004812 420 MTMIAN----DQDAEVASVDCSIGD--TYLSLSRYDEAGFAYQKALTAFKTNKGEN-------H---------------- 470 (729)
Q Consensus 420 ~~~~~~----~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~---------------- 470 (729)
...... ...+....++..+-. ++...|++..+...+++.-.......... +
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 555432 113333344444433 44567888788777666655544432210 0
Q ss_pred -h----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-C--CCChH--------------HHHHHHHH
Q 004812 471 -P----------AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-P--GVPPE--------------EIASGLTD 522 (729)
Q Consensus 471 -~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~--~~~~~--------------~~~~~~~~ 522 (729)
+ ..+.+|..-|......+..++|.++++++++..++.. . ..... -...++..
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 0 1223344445666677888899999999999887754 0 00000 01234455
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCCh
Q 004812 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI---GERKSA 597 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 597 (729)
++.+..-.+++..|...+..+.......+.. ......+++..|..+...|+.+.|..+|.+..-..... ......
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 6777778899999999999988887665432 22345677889999999999999999998555333221 122233
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHH-H
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG-PYHPDTLGVYSNLAGTYD--AIGRLDDAIEILEFVVGIR-E 673 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~-~ 673 (729)
....+..++..++...+.-.....-+...++..+.... ..+.....++..+-.++. ..-...++...+..+++.. .
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 44555666777777655433322122233322222111 112233333333333332 2234458999999999887 3
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 674 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
.. ...--..-++..++..++ .|+..+.. .....++..-
T Consensus 527 ~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~-~~s~~a~~~A 564 (608)
T PF10345_consen 527 KL--GNSQLLAILLNLMGHRLF-EGDVGEQA-KKSARAFQLA 564 (608)
T ss_pred hh--ccchHHHHHHHHHHHHHH-cCCHHHHH-HHHHHHHHHH
Confidence 22 122233445566666666 78888877 6665565543
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=7.8e-09 Score=108.00 Aligned_cols=224 Identities=15% Similarity=0.141 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004812 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
......++..+...|-...|+..|++. ..|.....||...|+..+|..+..+-++.. . +
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~lek~--~-d-- 456 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELEKD--P-D-- 456 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhcCC--C-c--
Confidence 344678999999999999999888764 345556778888999999999888777621 1 1
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
+..|..+|.+....--|++|.++.+.. .+.+...+|......++|.++.++++..+++
T Consensus 457 ----~~lyc~LGDv~~d~s~yEkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------ 514 (777)
T KOG1128|consen 457 ----PRLYCLLGDVLHDPSLYEKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEI------ 514 (777)
T ss_pred ----chhHHHhhhhccChHHHHHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhc------
Confidence 245667777766666666666666432 2345566777778899999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.|.....|+.+|.+..+.+++..|..+|..++.+ .|+...+|++++..|...++-.+|...+.+|++..
T Consensus 515 --nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 515 --NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred --CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999998 66678999999999999999999999999999876
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.+. ..+|-+.-.+..+.|.+++|+..|.+.+.+-+...
T Consensus 584 ~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 433 24556677788899999999999999998765544
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.9e-08 Score=90.04 Aligned_cols=195 Identities=16% Similarity=0.117 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004812 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
.+.++-+++....+.....- ...++...++-.+..+....|+.+-|..++++....+|.. ..+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHH
Confidence 44566666666666554432 1234456677788888889999999999999877776544 2444566888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
+...|++++|+++|+..++- + +....++-..-.+...+|+.-+|++.+...++. .+...++|..
T Consensus 96 lEa~~~~~~A~e~y~~lL~d-------d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLED-------D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhcc-------C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence 89999999999999987762 2 223445555556677889888999999999988 6777889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHhhccc
Q 004812 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR---VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---~~~A~~~~l~~al~~~p~ 717 (729)
|+.+|...|+|++|.-+|++++-+ .|.....+.+||.++.-+|- ..-|. ++|.++++++|.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~ 223 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPK 223 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChH
Confidence 999999999999999999999865 68888888999999888774 44677 899999999994
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=8.2e-09 Score=96.54 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=121.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (729)
-+..|+..|+++......++.. .+. .-+...++.++++..+++++.. +|.....|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--------~~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--------DPL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--------Ccc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHHH
Confidence 4557888899887654432111 000 0111367788999999999998 89999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH-Hhcch--HHHHHHHHHHHHHHHHhCCCCC
Q 004812 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNE--LEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~ 554 (729)
..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++..++.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l---------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---- 143 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL---------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---- 143 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----
Confidence 99999999999999999999999999 444577889999974 67777 599999999999998776
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
..++..+|..+...|++++|+.+|++++++.
T Consensus 144 ---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 ---VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4788999999999999999999999999874
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=5.2e-10 Score=105.23 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
+..+-.-|.-+.+.++|.+|+..|.+||++ +|..+..|.+.|.+|.++|.++.|++.++.++.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 445566688888899999999999999999 9999999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.+..+|.+||.+|..+|++++|+ +.|+++|+++|+
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~-~aykKaLeldP~ 181 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAI-EAYKKALELDPD 181 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHH-HHHHhhhccCCC
Confidence 8999999999999999999999999 999999999998
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.8e-08 Score=93.21 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=141.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
..|....+ ..++..+...|+-+.+..+..++... ++.....+..+|...+..|+|.+|+..+.++..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--- 129 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--- 129 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence 45555566 88899999999999999988887665 6666677777999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
.|..+.+|..+|.+|.+.|++++|...|.+++++.+.. ..+..++|..|.-.|+++.|..++..+..
T Consensus 130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44557889999999999999999999999999998876 36788999999999999999999998876
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
. +.....+..+++.+....|++++|.....+-+
T Consensus 197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred C--------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 3 11134678899999999999999987765543
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=2.4e-07 Score=87.48 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
...++..|..++..|+|.+|+..|++++..+ +..+....+.+.+|.++...|++++|+..+++.+..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 4567889999999999999999999998874 346788899999999999999999999999999999655
Q ss_pred ChHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 512 PPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
++....+++.+|.++..+. ...+|+..|+..+..+|+.. -..+|...
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~ 132 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR 132 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence 5567778888888876543 34578888888888777652 12333333
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
+..+... .+.--..+|..|.+.|.|..|+..++.+++.+ |+.+....++..++.+|..+|..+.
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 3333222 33445567999999999999999999999883 3356666789999999999999885
Q ss_pred HH
Q 004812 661 AI 662 (729)
Q Consensus 661 A~ 662 (729)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.03 E-value=1.4e-08 Score=87.75 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
....+.+|..+...|++++|...|+-...+ .+.....|.+||.++..+|+|.+|+..|.+|+.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------- 98 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------- 98 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence 455678999999999999999999988876 3446789999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 688 (729)
+|+....++++|.|+...|+.+.|+..|+.++..+ ..+|.......
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----~~~~~~~~l~~ 144 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----GEVSEHQILRQ 144 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccChhHHHHHH
Confidence 88889999999999999999999999999999987 24566554443
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=3.8e-09 Score=93.22 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.......+|.++...|++++|...|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------- 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 4567889999999999999999999999998 7888899999999999999999999999999876
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.....++.+|.++...|++++|. ..|+.+++++|+
T Consensus 81 -~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 117 (135)
T TIGR02552 81 -DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGE 117 (135)
T ss_pred -CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccc
Confidence 5888899999999999999999999 999999999998
No 128
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.01 E-value=2.4e-09 Score=83.94 Aligned_cols=76 Identities=28% Similarity=0.386 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
+..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 346789999999999999999999999999999 6666766788899999999999999999999999999999875
No 129
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.01 E-value=7.3e-06 Score=88.63 Aligned_cols=342 Identities=12% Similarity=0.028 Sum_probs=220.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004812 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
+|...+.+..-+..+...|. +.+||++.-.|-+. ...+..+...+.-.+..++..--..+....-.
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d~----------~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~--- 408 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGDP----------EMAADLLEQLEWQLFNGSELSLLLAWLKALPA--- 408 (894)
T ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCCH----------HHHHHHHHhhhhhhhcccchHHHHHHHHhCCH---
Confidence 34556666666666666665 88888876655321 11233444455556666665443333322110
Q ss_pred hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004812 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (729)
..-..+| ......++......++.+|..+..++....+... +......+......|.+....|++++|+++.+.
T Consensus 409 -~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~ 483 (894)
T COG2909 409 -ELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL 483 (894)
T ss_pred -HHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0001112 2245567888889999999999998876643310 001123445556678888899999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (729)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (729)
++...+.... ...+.++..+|.+..-.|++++|+.+..++.+.....+.......+.+..+.++..+|+...| .-
T Consensus 484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~~ 558 (894)
T COG2909 484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--EQ 558 (894)
T ss_pred HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--HH
Confidence 9998877643 334577889999999999999999999999999888888777788888889999999933333 22
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHH
Q 004812 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535 (729)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 535 (729)
.++.........+..+.........+.++...-+++.+..-....+++..... .........++.|+.++...|++++
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHH
Confidence 33333222222222333223333344444444447777777777777654432 1122223334689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
|...+.+...............+.++.........+|+...|.....+.
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9999999998887663222344555555566677889999988877663
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.00 E-value=3e-08 Score=91.76 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=141.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..++++..+.+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 5666677 88999999999999998888886655 2223344555899999999999999999999998776
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..+|..+|.+|.+.|+++.|..-|.+++++... ...+.+++|..+.-.|+++.|..++..+...
T Consensus 133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAPN--------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6 578899999999999999999999999998432 3468899999999999999999999999876
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
-+....+..+|+.+...+|++++|.....+-+
T Consensus 198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 45566788999999999999999988766544
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=6e-09 Score=98.19 Aligned_cols=120 Identities=23% Similarity=0.239 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
+.-+-.-|.-+.+.++|.+|+..|.+||.+. +..+..|.+.|.+|.++|.++.|++-++.|+.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 4445667888899999999999999999972 335788999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
+|....+|..||.+|..+|++++|++.|++++++ +|++...+.+|..+-..++...
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999988 6777777888877777766655
No 132
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.00 E-value=2.1e-09 Score=84.25 Aligned_cols=77 Identities=34% Similarity=0.544 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
||+.+.++.++|.+|..+|++++|+.+|++++++ .+.+|+.+|..+.++.++|.++...|++++|+ .++++++++..
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~-~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL-EYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhc
Confidence 5888999999999999999999999999999999 77888888999999999999999999999999 99999998753
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=8.1e-09 Score=89.19 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
....++.+|..+...|++++|...|+-...+ +|.....|++||.++..+|++++|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------- 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------- 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3456788899999999999999999999999 9999999999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
+|+.+.+++++|.++...|+.+.|. ..|+.++...
T Consensus 99 -~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~ 133 (157)
T PRK15363 99 -KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRIC 133 (157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence 6888899999999999999999999 9999999887
No 134
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.98 E-value=1.7e-07 Score=105.08 Aligned_cols=444 Identities=15% Similarity=0.102 Sum_probs=295.5
Q ss_pred HHHHHHHHHHHHH-HHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHH
Q 004812 238 PQKALELALRAAK-SFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (729)
Q Consensus 238 ~~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 316 (729)
.++|.+++..|+- +...+..-...|+. .+-++..+...+++.+|...=++++++.+...+..+|. .+..+..++.
T Consensus 640 ~~dav~~~~~al~k~~~~~~~~~fnp~~---f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv 715 (1236)
T KOG1839|consen 640 LDDAVKYATKALVKLVAVCGPYGFNPAG---FYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV 715 (1236)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCccc---cccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence 3457777555543 33333222222333 33337777888999999999999999888788877774 4566777787
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004812 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396 (729)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 396 (729)
.++....+.+|+.+-.+++.+.-.+.+..+|..+..+.+.+..-...+ +-+.+.+..+++-........+...+.. .
T Consensus 716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H 792 (1236)
T KOG1839|consen 716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H 792 (1236)
T ss_pred eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence 777888889999999999998877777767766655444433332233 7777888888887777666655554444 3
Q ss_pred HHHHHHHH---hCCHHHHHHHHHHHHHHH----HhCCCChh---------------------------HHHHHHHHHHHH
Q 004812 397 LMGLICET---KGDHEAALEHLVLASMTM----IANDQDAE---------------------------VASVDCSIGDTY 442 (729)
Q Consensus 397 ~lg~~~~~---~g~~~~A~~~~~~al~~~----~~~~~~~~---------------------------~~~~~~~la~~~ 442 (729)
.+..++.. ..+...+....-++.... ......+. ...-.-.+..+.
T Consensus 793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~ 872 (1236)
T KOG1839|consen 793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL 872 (1236)
T ss_pred HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence 33332222 222222222221111000 00000000 000001111122
Q ss_pred HHcCCHHHHH---HHHHHHHHHHHHhcCC-----------------------CCh--hHHHHHHHHHHHHHHcCCHHHHH
Q 004812 443 LSLSRYDEAG---FAYQKALTAFKTNKGE-----------------------NHP--AVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 443 ~~~g~~~~A~---~~~~~al~~~~~~~~~-----------------------~~~--~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
...|...-+. ..+..-+....+.... ..| ..+.-....+......|.+.+|.
T Consensus 873 ~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~ 952 (1236)
T KOG1839|consen 873 LKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAY 952 (1236)
T ss_pred hhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhh
Confidence 2222211111 1111111111111100 011 12233344566666778888888
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCC
Q 004812 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~ 573 (729)
+ .-+++.++.... +..++..+..|..|+.++...+++++|+.+-.++.-+.....+... .....+.+++...+..++
T Consensus 953 ~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 953 E-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred h-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 8 777777766543 5568889999999999999999999999999999988888777654 556778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
...|...+.++..+..-..+..++..+.+..+++.++...++++.|+.+++.|+.....+.++..-.....+..+++++.
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 99999999999988766555555556778889999999999999999999999999999999888888889999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004812 654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 690 (729)
.++++..|+...+....++...+|++|+........+
T Consensus 1111 s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred hhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 9999999999999999999999999998876654443
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=2.8e-08 Score=91.12 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
.+.+++.+|.++...|++++|+..|++++.+.. ++...+.++.++|.++...|++++|+.+|++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 467788999999999999999999999998732 22334568999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004812 637 YHPDTLGVYSNLAGTYD-------AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 688 (729)
+|.....+..+|.++. .+|++++|+..+.+++..+++.++.+++....+..
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 6776677777777777 89999999999999999999998877665544333
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.95 E-value=2e-08 Score=88.62 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004812 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (729)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (729)
.|++++...+.. ......+|..+...|++++|...|++++... +....++..+|.++...|++++
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence 455555554433 4667889999999999999999999988752 2245789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
|+.+|++++.+ +|.....++.+|.+|...|++++|+.+|++++++.
T Consensus 70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999998 78888899999999999999999999999999873
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.95 E-value=3.6e-07 Score=88.31 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
...++..|..+...|++++|+..|++++... +..+....+...+|.+|.+.+++++|+..+++.++....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----- 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----- 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----
Confidence 4456778899999999999999999998873 234566667799999999999999999999999999544
Q ss_pred ChHHHHHHHHHHHHHHHhcc------------------hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004812 512 PPEEIASGLTDVSSIYESMN------------------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (729)
++....+++.+|.++...+ ...+|+..|++.++.+|+.. -
T Consensus 102 -~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~---------------------y 159 (243)
T PRK10866 102 -HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ---------------------Y 159 (243)
T ss_pred -CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------------------h
Confidence 6677888999998764443 13467777777777776551 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
..+|...+..+... .+.--..+|..|.+.|.|..|+.-++.+++.+ |+.+...+++..++..|.
T Consensus 160 a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 160 TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR 223 (243)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence 12333322222221 23344577899999999999999999999873 336777889999999999
Q ss_pred HcCChHHHHHHHHH
Q 004812 654 AIGRLDDAIEILEF 667 (729)
Q Consensus 654 ~~g~~~~A~~~~~~ 667 (729)
.+|..++|..+...
T Consensus 224 ~lg~~~~a~~~~~~ 237 (243)
T PRK10866 224 QLQLNAQADKVAKI 237 (243)
T ss_pred HcCChHHHHHHHHH
Confidence 99999999887654
No 138
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.3e-06 Score=77.02 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+..|..-+..|....+|++|...+.+|......+......+..+-..+.+...+..+.++..+|++|..++.+.+ .|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence 445666677788889999999999999888777777777888888899999999999999999999999999987 56
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004812 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
..+..-...+--....-++++|+.+|++++.+.+. ++........+...++++.+..++++|-..+.+-..+....
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~- 183 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC- 183 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence 66665566666667788999999999999999877 44455556778889999999999999998888876666544
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
.........+.....+|+...+|..|..+|+..-++ +....+....++.+|-..| ..|+.++....+.
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 223333445556666777778999999999886554 2222222345555554444 4567776655543
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=1.1e-05 Score=84.30 Aligned_cols=227 Identities=16% Similarity=0.189 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH------hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 267 CLHVIAAIYCSLGQYNEAIPVLEQ------SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
.|...|.+|.+..++++|+++|.+ ++++.+... |...+..--..|.-+...|+++.|+.+|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 344556666777778888887764 333332111 1222233445677788888888888888776544221
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
........+|.+|+..+...-+..... ..|-.++.-|...|+|+.|.++|.++-
T Consensus 739 ----------------ieaai~akew~kai~ildniqdqk~~s---------~yy~~iadhyan~~dfe~ae~lf~e~~- 792 (1636)
T KOG3616|consen 739 ----------------IEAAIGAKEWKKAISILDNIQDQKTAS---------GYYGEIADHYANKGDFEIAEELFTEAD- 792 (1636)
T ss_pred ----------------HHHHhhhhhhhhhHhHHHHhhhhcccc---------ccchHHHHHhccchhHHHHHHHHHhcc-
Confidence 122234456777777665443332222 125667888899999999999987652
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH---
Q 004812 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC--- 497 (729)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--- 497 (729)
....--.+|.+.|+|.+|.+.-.+... .......|...+.-+-..|+|.+|..+|
T Consensus 793 -------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 793 -------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred -------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 122234567788999888776655432 3455667777777788888888887776
Q ss_pred ---HHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 498 ---ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 498 ---~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.++++++.+....+ .......+...+|.-|...|+...|...|-++-.
T Consensus 851 ~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 851 GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 44555554432111 1112334556667777777777777776665543
No 140
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.8e-05 Score=82.96 Aligned_cols=224 Identities=16% Similarity=0.200 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQK------ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.|-.-|.+|.+..++++|+++|++ ++++.+-.+ .......-...|.-+...|+++.|+..|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence 345567777778888888888764 455544433 2233344455677778889999998888765443211
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
........+|.+|+..++..... ......|-.++.-|...|+|+.|.++|.++-..
T Consensus 739 ----------------ieaai~akew~kai~ildniqdq--------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~ 794 (1636)
T KOG3616|consen 739 ----------------IEAAIGAKEWKKAISILDNIQDQ--------KTASGYYGEIADHYANKGDFEIAEELFTEADLF 794 (1636)
T ss_pred ----------------HHHHhhhhhhhhhHhHHHHhhhh--------ccccccchHHHHHhccchhHHHHHHHHHhcchh
Confidence 12223344555555554432221 111233456677777888888888777654221
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH--
Q 004812 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEIL-- 665 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-- 665 (729)
..-...|-+.|+|+.|.++-+++.. .......|..-+.-+...|+|.+|..+|
T Consensus 795 ----------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 795 ----------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred ----------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 1123445566777777665555432 1233334445555555555555555444
Q ss_pred ----HHHHHHHHHH---------cCCCChhH-HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004812 666 ----EFVVGIREEK---------LGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 666 ----~~al~~~~~~---------~~~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.++++++.+. .+..||+. .+++.++|.-|...|+...|. ..|-++
T Consensus 850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae-~~flea 908 (1636)
T KOG3616|consen 850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE-EHFLEA 908 (1636)
T ss_pred ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH-HHHHhh
Confidence 2334433321 22334443 467888999999999999998 655444
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=5.7e-07 Score=84.90 Aligned_cols=183 Identities=18% Similarity=0.241 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...++..|..++..|+|.+|+..|++.+... +..+. ...+.+.+|.+++..|++++|+..|++.+...+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence 5568889999999999999999999998875 33332 3456889999999999999999999999988644
Q ss_pred CCchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 004812 345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 413 (729)
++....+++.+|.+++... ...+|+..|+..+...|+..-. .+|..
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~ 131 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK 131 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence 6788899999999877653 2347888888888888776421 12222
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004812 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
.+..+. ...+.--..+|..|...|.+..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 222111 11223345688999999999999999999988743 3566777889999999999988754
Q ss_pred H
Q 004812 494 K 494 (729)
Q Consensus 494 ~ 494 (729)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2.7e-08 Score=98.54 Aligned_cols=258 Identities=17% Similarity=0.119 Sum_probs=157.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
.-++..|+|..++.-+.. ..............+.+++..+|+++..+.-... ...|. ..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence 345678889888865541 1223445566677788899999988765533211 11222 334455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
++..+...++.+.++..++..+ ...............|.++...|++++|++.+.+.- . ..
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~-------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~-------lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELL-------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----S-------LE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCC-------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----C-------HH
T ss_pred HHHHHhCccchHHHHHHHHHHH-------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----c-------cc
Confidence 5655544344444433332221 111121223345666778888899999988876531 0 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
.......+|+..++++.|.+.++.+.++ .+ + . ..+....+++.+..| ++.+|...|++..+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e-D-~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE-D-S--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC-C-H--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-c-H--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 4455678889999999998888775432 11 1 1 122222333444444 588888888886543
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+....++..+|.++..+|+|++|...+++++.. +|...+++.+++.+....|+..++..+++.++...+|+
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 3455667889999999999999999999888743 67788889999999999999855443788888878875
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.86 E-value=1.9e-06 Score=83.40 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
....++..|..+...|++++|+..|++++..+.. .+....+.+.+|.+|...+++++|+..+++.++..|+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~- 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP- 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence 4556778899999999999999999999998433 456677789999999999999999999999999988774
Q ss_pred CCCcHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004812 553 QQSTVAGIEAQMGVMYYMLG---------------NY---SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (729)
....+++.+|.++...+ +. .+|+..|++.++.++. ...
T Consensus 104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y---------------- 159 (243)
T PRK10866 104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY---------------- 159 (243)
T ss_pred ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence 33567778887764443 22 2344555555544321 111
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
..+|...+..+... .+.--+.+|..|.+.|.+.-|+.-++.+++-+ |+.|...++++.++..|
T Consensus 160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 12233222222221 22233578999999999999999999999877 77788999999999999
Q ss_pred HHhCCHhHHHHHHHHHH
Q 004812 695 KEAGRVRSRKAQSLETL 711 (729)
Q Consensus 695 ~~~g~~~~A~~~~l~~a 711 (729)
...|..++|. .....+
T Consensus 223 ~~lg~~~~a~-~~~~~l 238 (243)
T PRK10866 223 RQLQLNAQAD-KVAKII 238 (243)
T ss_pred HHcCChHHHH-HHHHHH
Confidence 9999999998 655443
No 144
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=6.4e-06 Score=82.45 Aligned_cols=409 Identities=14% Similarity=0.108 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--- 341 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 341 (729)
...+++.|.+|+....+..|++.....+........ .......+..-..+....+.++|+.++.-.-.+....
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~----~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES----SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 556788899999999999999887776654321111 1112223444555666667778876654333322110
Q ss_pred -hCC----------CCchHH-----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004812 342 -LGE----------TDPRVG-----------ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (729)
Q Consensus 342 -~~~----------~~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg 399 (729)
.|. ..|..+ .+....-..|.+..+...+..-.+.++.+..+. +..+...+
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs 247 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS 247 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence 110 011111 122222334445555555555555554444322 34577888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCC------
Q 004812 400 LICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGE------ 468 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~------ 468 (729)
..++..|++.+|.+.+...- +....+ ..+. ....++++|.+++.+|.|.-+..+|.+|++ .+.+....
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 99999999999998875431 111111 1122 344568999999999999999999999996 44433211
Q ss_pred ---CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch-------------
Q 004812 469 ---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE------------- 532 (729)
Q Consensus 469 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 532 (729)
.......++++.|..|...|++-.|.++|.++...+... ...|..||.++....+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---------PrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---------PRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 012345788999999999999999999999999998662 4567777777653211
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHhC--------------------------
Q 004812 533 ------------------------------------LEQAIKLLQKALKIYNDA-------------------------- 550 (729)
Q Consensus 533 ------------------------------------~~~A~~~~~~al~~~~~~-------------------------- 550 (729)
.+=|.-+++.++-+.+..
T Consensus 398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 122444455554443110
Q ss_pred --------CCCC--------C--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004812 551 --------PGQQ--------S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (729)
Q Consensus 551 --------~~~~--------~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (729)
.|+. + ....++.+.+.+-...|+.-.|+..-.+.++..+ ...++..|
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------lS~~~kfL 548 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------LSKIYKFL 548 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------hhhHHHHH
Confidence 0000 0 1244566778888899999999999888887632 23344444
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHH------------HHHHhcC---------CC-------ChhH--HHHHHHHHHH
Q 004812 607 -----GLACVQRYSINEAVELFEEARS------------ILEQECG---------PY-------HPDT--LGVYSNLAGT 651 (729)
Q Consensus 607 -----a~~~~~~g~~~~A~~~~~~al~------------~~~~~~~---------~~-------~~~~--~~~~~~la~~ 651 (729)
|.++..+.+..+|..++.--+- -+....+ .. .++. ...+++||.+
T Consensus 549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a 628 (696)
T KOG2471|consen 549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA 628 (696)
T ss_pred HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence 4455566777787776654210 0111000 00 1121 2367899999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004812 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
|..+|++++|..++..+..+..+. ....+...-..+-...|+...|. ..+++.
T Consensus 629 ~alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al-~~lk~~ 681 (696)
T KOG2471|consen 629 LALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDAL-ARLKQC 681 (696)
T ss_pred HHHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchH-HHHHhc
Confidence 999999999999999999875321 12223333333456789999998 776653
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.83 E-value=5.8e-08 Score=83.41 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 680 (729)
.+++.+|..+...|++++|+..|.+++.. .++++....+++.+|.++...|++++|+.+|++++... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46788999999999999999999999987 22234446789999999999999999999999999764 555
Q ss_pred hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+....++..+|.++...|++++|. ..++.+++..|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~ 108 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPG 108 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcC
Confidence 666788999999999999999999 999999999997
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=7.3e-08 Score=88.36 Aligned_cols=121 Identities=17% Similarity=0.062 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
......+++.+|.++...|++++|+..|++++.+.. ++.....++.++|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 345678889999999999999999999999999832 23445678999999999999999999999999998655
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
.......++.++..+|..+...|+++.|+..+.+++..+++.....+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 43222234445555555555999999999999999988777654444
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=4.6e-07 Score=83.30 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
..+..++.+|..+...|++++|+.+|++++.+... +.....++..+|.++...|++++|+.+|++++..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 101 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------ 101 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 44667899999999999999999999999986432 1223578999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCC
Q 004812 636 PYHPDTLGVYSNLAGTYDAIGR-------LDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~ 679 (729)
+|.....+..+|.+|...|+ ++.|+..++++++.+++.+..+
T Consensus 102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 78888888899999987665 6666666666766666655443
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=4.3e-08 Score=97.11 Aligned_cols=253 Identities=17% Similarity=0.103 Sum_probs=158.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004812 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
-++..|+|..++.-+. + ... ...........+.+.+..+|+++..+.-+.. .. .|. ..+...+
T Consensus 10 n~fy~G~Y~~~i~e~~--~--~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~l 72 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS--L--KSF----SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRLL 72 (290)
T ss_dssp HHHCTT-HHHHCHHHH--C--HTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHHH
T ss_pred HHHHhhhHHHHHHHhh--c--cCC----CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHHH
Confidence 3566889988886655 1 111 1223345677889999999998877654421 12 222 2333455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+..+...++.+.++..++..+.- .............|.++...|++++|+..+.+. ....
T Consensus 73 a~y~~~~~~~e~~l~~l~~~~~~------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~lE 132 (290)
T PF04733_consen 73 AEYLSSPSDKESALEELKELLAD------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSLE 132 (290)
T ss_dssp HHHHCTSTTHHCHHHHHHHCCCT------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCHH
T ss_pred HHHHhCccchHHHHHHHHHHHHh------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Cccc
Confidence 55554444555554443332211 112233455667788888899999988877653 1134
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
.......+|..+++++.|.+.++.+.++ .++.. .+....+++.+..| ++.+|...|++..+.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-------- 197 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-------- 197 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------
Confidence 4556778999999999999888776543 22221 22223344444555 5889999998854421
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI 671 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 671 (729)
.....+++.++.++..+|+|++|...+++++.. +|....++.+++.+...+|+. +.+.+++.+....
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 113567899999999999999999999999876 788888999999999999998 5555666665543
No 149
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.81 E-value=0.00022 Score=77.65 Aligned_cols=340 Identities=11% Similarity=-0.028 Sum_probs=211.8
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
+.....+..-+..+...|...+|+.+.-.|-+- ......+-..+.-+...++..--..+.+ ..+.-
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----------~~aa~lle~~~~~L~~~~~lsll~~~~~----~lP~~ 409 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDP----------EMAADLLEQLEWQLFNGSELSLLLAWLK----ALPAE 409 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCH----------HHHHHHHHhhhhhhhcccchHHHHHHHH----hCCHH
Confidence 444556666777777788888888766554322 2233334444555555555433222221 11000
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
. -...+......+.......++.+|..+..++....+..... .....+...-..|.+....|+++.|+++.+.++.
T Consensus 410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 01122344556677778899999999999888776653221 2233455556678888999999999999999986
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH--HHHHH
Q 004812 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES--KSYCE 498 (729)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~ 498 (729)
....... .....++..+|.+..-.|++++|..+...+.++.++... ......+....+.++..+|+...| ...|.
T Consensus 487 ~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 487 QLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred hcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6544432 334557788999999999999999999999999877642 344455666778889999943333 33333
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004812 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (729)
Q Consensus 499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (729)
..-...... ...+.....+...+...+ -+++.+..-....+.+.............+++.++.+++..|++++|.
T Consensus 564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~---~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 564 LIREQHLEQ--KPRHEFLVRIRAQLLRAW---LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHhhh--cccchhHHHHHHHHHHHH---HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 222221110 011112223333333333 337777777777777665443333333334468999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
..+.+...+..... .+....+.++.........+|+..+|.....+..
T Consensus 639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999888766544 3334444455555556667899999988877743
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=1.9e-07 Score=85.85 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=85.8
Q ss_pred CCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 257 NGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336 (729)
Q Consensus 257 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 336 (729)
+..+.+..+.+++.+|..+...|++++|+.+|++++.+.. +.+ ....++..+|.++...|++++|+.+|++++.
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPN-DRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445577788899999999999999999999999998742 111 1234689999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 004812 337 VQKQVLGETDPRVGETCRYLAEAHVQALQ-------FSEAQKFCQMALDI 379 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~ 379 (729)
. .|.....+..+|.++...|+ ++.|+..+.++++.
T Consensus 101 ~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 101 L--------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred h--------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 8 67778888899999988776 44444444444443
No 151
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6.3e-06 Score=75.22 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=169.6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
+....+..|..-+.+|....+|++|..++.+|.+.++. .......+..+-..+.+...+..+.++..+|++|..++.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445566677778888899999999999999988776 334556678888899999999999999999999999999
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+. |.+...+.++-.-|.+ ...-++++|+.+|++++.+...-... ......+...++++.+...+.+|...+.+-..
T Consensus 103 E~-GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~--~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 103 EC-GSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRD--QMAFELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred Hh-CCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchH--HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 88 7766666665554544 46678999999999999987653322 22345677788999999999999999888777
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
+...... .+.....+..+..+|....+|..|...++...++- +-..++...++.+|-..|. .|+.++.. ..+
T Consensus 179 ~~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip----~f~~sed~r~lenLL~ayd-~gD~E~~~-kvl 250 (308)
T KOG1585|consen 179 AADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP----AFLKSEDSRSLENLLTAYD-EGDIEEIK-KVL 250 (308)
T ss_pred HHHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc----cccChHHHHHHHHHHHHhc-cCCHHHHH-HHH
Confidence 6655433 34444556666677777889999999999876652 2335666777777776654 67777766 554
Q ss_pred H
Q 004812 709 E 709 (729)
Q Consensus 709 ~ 709 (729)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.80 E-value=7.8e-07 Score=79.12 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=98.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004812 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (729)
..++...+...++..+.- .++.+....+.+.+|.+++..|++++|...|+.++.. ..++.....+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------APDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCHHHHHHHHHHH
Confidence 578888887777776665 2234556788899999999999999999999999987 33355556788899
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
+.++...|++++|+..++.. ........++..+|.+|...|++++|+..|++|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998651 1222345667789999999999999999999874
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.80 E-value=5.4e-08 Score=100.23 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
+...|..++..|+|++|+.+|.+++.+ +|....++..+|.+|..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 455688889999999999999999999 8889999999999999999999999999999987 688
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...+++++|.++..+|++++|+ ..|++++.++|+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~ 102 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 8899999999999999999999 999999999997
No 154
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=1.2e-06 Score=98.06 Aligned_cols=219 Identities=12% Similarity=0.064 Sum_probs=154.6
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
+++..+...+|+.+..|+.....++..++ .++|++.+++||..+.-.- .....+.+.+|.+|-..| |.-+...+.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKV 1519 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHH
Confidence 68888889999999999999999999998 9999999999998762111 112245666777776666 667788889
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004812 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS 367 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 367 (729)
|++|.+.+ ....+|..|..+|...+++++|.++|+..++.+. .....|..+|..++.+.+-+
T Consensus 1520 FeRAcqyc----------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1520 FERACQYC----------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred HHHHHHhc----------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHH
Confidence 99998875 1234588899999999999999999999888852 45678889999999999889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004812 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447 (729)
Q Consensus 368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 447 (729)
.|..++.+||...|... + .......+.+-+..|+.+.+...|+..+. ..|.....|.-+...-...|+
T Consensus 1582 aa~~lL~rAL~~lPk~e---H---v~~IskfAqLEFk~GDaeRGRtlfEgll~------ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQE---H---VEFISKFAQLEFKYGDAERGRTLFEGLLS------AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHHHHhhcchhh---h---HHHHHHHHHHHhhcCCchhhHHHHHHHHh------hCccchhHHHHHHHHHHccCC
Confidence 99999999998877632 1 23344455555555555555555554432 123333444444444555555
Q ss_pred HHHHHHHHHHHHHH
Q 004812 448 YDEAGFAYQKALTA 461 (729)
Q Consensus 448 ~~~A~~~~~~al~~ 461 (729)
.+.+...|++++.+
T Consensus 1650 ~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555544
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.78 E-value=1.2e-07 Score=97.82 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
+...|..++..|+|++|+.+|.+++.+. +....++..+|.+|..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 3466888999999999999999999862 224578999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
...+++.+|.+|..+|++++|+..|++++.+ +|....+...++.+....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987 566677777777775554
No 156
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=8.3e-06 Score=73.96 Aligned_cols=197 Identities=12% Similarity=0.147 Sum_probs=137.1
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004812 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
.+.+++|.++|.++-..+ ....++..|-..|.++.......+...+.+..|...+.+|
T Consensus 27 ~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy 84 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY 84 (288)
T ss_pred CcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 357888888887765543 3334555566666666666666666667777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
.. ++..+|+.+++++++++...+. ....+..+..+|.+|..- .++++|+.+|+++-+.+..- ......-.++.
T Consensus 85 kk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~l 158 (288)
T KOG1586|consen 85 KK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLL 158 (288)
T ss_pred hc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHH
Confidence 55 4999999999999999887752 334456677899999875 99999999999999998652 22333345677
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
..+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++-.++
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 778888889999999999998877655442222223334456677777767766665555554444
No 157
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.76 E-value=1.4e-06 Score=97.94 Aligned_cols=400 Identities=14% Similarity=0.103 Sum_probs=268.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004812 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (729)
.++..+...+++.+|...-++++++.+..++.+.|+...-+..++..++....+.+|+.+-.+++.+.........+..+
T Consensus 670 s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~ 749 (1236)
T KOG1839|consen 670 SLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTA 749 (1236)
T ss_pred cCceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCcccc
Confidence 34777788899999999999999999999999999999999999988888888999999999988887666554444333
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CC-ChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHH--h
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQ-DAEVASVDCSIGDTYLS---LSRYDEAGFAYQKALTAFKT--N 465 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~--~ 465 (729)
..+.+....-...| +-++.++..+++-+... +. +...+.. ..+..++.. ......+..-.-++.+...+ .
T Consensus 750 a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~ 826 (1236)
T KOG1839|consen 750 ATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAA 826 (1236)
T ss_pred chhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhc
Confidence 33333222222222 55666666665443332 11 1111111 222222211 11111111111111110000 0
Q ss_pred cCCCChh---------------------------HHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHhcCC-------
Q 004812 466 KGENHPA---------------------------VASVFVRLADMYNRTGKLRESKS---YCENALRIYEKPV------- 508 (729)
Q Consensus 466 ~~~~~~~---------------------------~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~~------- 508 (729)
.+...+. ...-...+..+....|...-+.. .+..-+....+..
T Consensus 827 ~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ 906 (1236)
T KOG1839|consen 827 AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEP 906 (1236)
T ss_pred cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCC
Confidence 0000010 00000111122222222111111 1111111100000
Q ss_pred -CC--------------CChH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH
Q 004812 509 -PG--------------VPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM 570 (729)
Q Consensus 509 -~~--------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~ 570 (729)
.. ...| ..+.-....+......|.+.+|.+ .-+++.+..+..+.. +..+..|..++.++..
T Consensus 907 ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~ 985 (1236)
T KOG1839|consen 907 KSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNR 985 (1236)
T ss_pred CCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh
Confidence 00 0011 122334455666677888888988 888888887665553 4778889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.|++++|+.+-.++.-+.......+++.....+.+++...+..++...|+..+.+++.+..-..++++|..+.+..++..
T Consensus 986 ~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen 986 LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence 99999999999999999888888888888899999999999999999999999999999888888899999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 651 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++...++++.|+.+.+.|+.+...++|+.+-.+...+..++++....+++..|. ...+....+.+.
T Consensus 1066 l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1066 LLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL-EHEKVTYGIYKE 1131 (1236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH-HHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 888877776654
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-07 Score=92.98 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=118.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004812 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (729)
...|..|++.|+|..|...|++|+..+......+. .....++.+++.++.++++|.+|+....++|++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 45688999999999999999999988763322221 123457899999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+|.+..+++..|.++..+|+++.|+..|++++++ .|.+..+...|..+-.+..++.+...+.|..++..
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999988 68888888889888888877777754888888877
Q ss_pred ccc
Q 004812 715 NSR 717 (729)
Q Consensus 715 ~p~ 717 (729)
-+.
T Consensus 356 ~~~ 358 (397)
T KOG0543|consen 356 LAE 358 (397)
T ss_pred ccc
Confidence 653
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.76 E-value=6.2e-07 Score=79.77 Aligned_cols=135 Identities=22% Similarity=0.245 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
+...+..+...+..++ +..+...+++.+.-+ ...+....+...+|.+++..|++++|+..|+.++...
T Consensus 11 a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----- 78 (145)
T PF09976_consen 11 ASALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----- 78 (145)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence 3445566666667776 777776666665542 2224557788889999999999999999999999753
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
++. .....+.+.||.++...|++++|+..++... ..+....++..+|.+|...|++++|+..|++++
T Consensus 79 ~d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 79 PDP-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 222 2334468899999999999999999986621 135566788899999999999999999999874
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=3.1e-07 Score=78.85 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.+++.+|..+...|++++|+..|.+++.... .......++..+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 4678899999999999999999999987521 12223567889999999999999999999999987 2224
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+....++..+|.++..+|++++|+.++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4456789999999999999999999999999873
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=6.1e-08 Score=73.77 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHhhcc
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG-RVRSRKAQSLETLLDANS 716 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g-~~~~A~~~~l~~al~~~p 716 (729)
+.++..+|.++...|++++|+.+|++++++ +|+...+++++|.++..+| ++++|+ ..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence 568899999999999999999999999998 7999999999999999999 799999 99999999998
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=1.4e-07 Score=76.98 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.+ .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4678899999999999999999999988 6666678999999999999999999999999876 35
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
....++..++.++...|++++|. ..+..++..+|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 100 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDPN 100 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCCC
Confidence 55578999999999999999999 999999988874
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.7e-07 Score=90.16 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
..+...-..|+.+++.|+ |..|+..|++|+..+......++. .....++.+++.||.++++|.+|+..+.++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345567788999999997 999999999999998754332222 2235678999999999999999999999999
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH-HH
Q 004812 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK 371 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~ 371 (729)
.+. +.+ ..++++.|.++..+|+|+.|+..|++++++ .|.+..+...|..+..+..++.+. .+
T Consensus 285 e~~-----~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 285 ELD-----PNN----VKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hcC-----CCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 333 446999999999999999999999999999 688888888888777666555444 67
Q ss_pred HHHHHHHHHHh
Q 004812 372 FCQMALDIHKD 382 (729)
Q Consensus 372 ~~~~al~~~~~ 382 (729)
+|..++.....
T Consensus 348 ~y~~mF~k~~~ 358 (397)
T KOG0543|consen 348 MYANMFAKLAE 358 (397)
T ss_pred HHHHHhhcccc
Confidence 77777766543
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.5e-06 Score=87.62 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+....+++..+..++..|++++|+..++..+.. .|.+...+...+.++...++..+|.+.+++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 345567888999999999999999999997775 7889999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
.|.......++|..|.+.|++.+|+..++..+.-.+.. ...|..|+..|..+|+..+|...
T Consensus 370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A-------- 430 (484)
T COG4783 370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA-------- 430 (484)
T ss_pred ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence 33446678899999999999999999998887766655 46788999999999987765433
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.++.|...|++++|+..+..+.+.
T Consensus 431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 -----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 355667789999999999988776
No 165
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=4.1e-06 Score=93.83 Aligned_cols=211 Identities=12% Similarity=0.136 Sum_probs=171.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
+|..+..|...-..+...++.++|.+.+++||....- ....+...+|..+-++...-|.-+.-.+.|++|.+++..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~----REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF----REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc----chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch
Confidence 7999999999999999999999999999999987411 112333445555555555556667778889999888754
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. .++..|..+|...+.+++|.++|+..++.+.+ ...+|..+|..++++.+-++|..++.+|++.
T Consensus 1530 ~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1530 Y--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred H--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 4 67888999999999999999999999887642 3468999999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+.+ ..........|++-++.|+.+.+..+|+-.+.- +|...+.|.-+...-.+.|+.+... ..|+
T Consensus 1594 lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR-~lfe 1658 (1710)
T KOG1070|consen 1594 LPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVR-DLFE 1658 (1710)
T ss_pred cch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHH-HHHH
Confidence 332 235667788899999999999999999988864 6888888888888888999999988 9999
Q ss_pred HHHhhc
Q 004812 710 TLLDAN 715 (729)
Q Consensus 710 ~al~~~ 715 (729)
+++.+.
T Consensus 1659 Rvi~l~ 1664 (1710)
T KOG1070|consen 1659 RVIELK 1664 (1710)
T ss_pred HHHhcC
Confidence 988764
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=3.8e-07 Score=88.67 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=91.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 601 VALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 601 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
..++..|..+ +..|+|++|+..|+..++.+ |+++....+++.+|.+|...|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999981 2233346799999999999999999999999999876 77
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|...++++.+|.++...|++++|. ..|+++++..|+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~ 249 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPG 249 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 8899999999999999999999999 999999999997
No 167
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=9.6e-06 Score=73.57 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=138.2
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004812 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
.+.+++|.++|.++-.+ |....++..|=..|.++-+...+. +..+..+..|...+.
T Consensus 27 ~~k~eeAadl~~~Aan~-----------------------yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~~ 82 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANM-----------------------YKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAAN 82 (288)
T ss_pred CcchHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHH
Confidence 45677777777666544 334455566666666666666555 555666777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
+|.+ ++..+|+.+++++++++...+.-. .-+..+..+|.+|..- .++++|+.+|+++-+.+..... ....-.++
T Consensus 83 cykk-~~~~eAv~cL~~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC~ 157 (288)
T KOG1586|consen 83 CYKK-VDPEEAVNCLEKAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKCL 157 (288)
T ss_pred Hhhc-cChHHHHHHHHHHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHHH
Confidence 7655 499999999999999988766532 2345567889998865 8999999999999998765322 22233467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV----DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...|..-...++|.+|+..|++..... -+++-. -.-++.-|.++....+.-.+. ..+++..+++|.
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~ 227 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCc
Confidence 777888888999999999999887542 112221 223445566777768888888 999999999997
No 168
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.5e-06 Score=87.57 Aligned_cols=152 Identities=19% Similarity=0.114 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh
Q 004812 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI 297 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (729)
|.....++..|...+..|+ ++.|+..+...++.. |+.+..+...+.+++..++..+|.+.+++++.+.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~-~d~A~~~l~~L~~~~---------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQ-YDEALKLLQPLIAAQ---------PDNPYYLELAGDILLEANKAKEAIERLKKALALD-- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcc-cchHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--
Confidence 5666677777777777776 777777776644321 3445566677788888888888888888887775
Q ss_pred hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004812 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
+..+. ....+|.+|...|++.+|+..+...+.. +|+....|..||..|..+|+-.+|...
T Consensus 371 ---P~~~~----l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A----- 430 (484)
T COG4783 371 ---PNSPL----LQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLA----- 430 (484)
T ss_pred ---CCccH----HHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHH-----
Confidence 33322 3677788888888888777777776655 577777788888888777776655443
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004812 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
.+..|...|++++|+..+..+.+.
T Consensus 431 --------------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 431 --------------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344455567777777777766543
No 169
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.2e-05 Score=74.60 Aligned_cols=255 Identities=15% Similarity=0.107 Sum_probs=119.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
+-++..|+|..++....+... .+........+.+.|..+|.+...+.-...+- .....+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~-------~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-----------~~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS-------SKTDVELDVYMYRAYLALGQYQIVISEIKEGK-----------ATPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc-------ccchhHHHHHHHHHHHHccccccccccccccc-----------CChHHHHHH
Confidence 345567788777766554321 11333445667777777777654333221110 111122233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
++.+...-++.+.-+.-+.+-+... ...........-|.+|...|++++|++.......+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~-------~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADS-------TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhh-------ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence 3333333333332222222221110 01111223333455556666666666555542222 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcC
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----YSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~ 635 (729)
+...-..++.++.+++-|...++++.++.. ..++..||..+... +++..|.-+|++.-+.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------ 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDE----------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------ 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence 112223445555555656555555554421 12334444444322 2455555555554432
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
.+....++..+|.|...+|+|++|...++.++.- ++..++++.++..+-...|...++..+.+.++...+
T Consensus 203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 2333445566666666666666666666666642 344555666666666666666555545555555555
Q ss_pred cc
Q 004812 716 SR 717 (729)
Q Consensus 716 p~ 717 (729)
|+
T Consensus 273 p~ 274 (299)
T KOG3081|consen 273 PE 274 (299)
T ss_pred Cc
Confidence 54
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.64 E-value=2e-07 Score=70.90 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG-RLDDAIEILEFVVGI 671 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 671 (729)
+.+|..+|.++...|++++|+.+|++++++ +|+...+++++|.+|..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999 9999999999999999999 799999999999986
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.61 E-value=0.00028 Score=69.19 Aligned_cols=303 Identities=15% Similarity=0.081 Sum_probs=205.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004812 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
..|.+....|+ -..|...-.++-+++... .+ +.++..-+..-...|+|+.|.+-|+.++... .
T Consensus 89 StGliAagAGd-a~lARkmt~~~~~llssD-----qe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---------E 151 (531)
T COG3898 89 STGLIAAGAGD-ASLARKMTARASKLLSSD-----QE--PLIHLLEAQAALLEGDYEDARKKFEAMLDDP---------E 151 (531)
T ss_pred hhhhhhhccCc-hHHHHHHHHHHHhhhhcc-----ch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---------H
Confidence 34445555665 677777777776654221 12 2334455777788999999999999987652 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.....+..|-.--...|..+.|+.+-+.+... -|....++...-...+..|+|+.|+++.+......--..+
T Consensus 152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 22223334444446789999999999999888 4777788888878888999999999999877664432222
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
......+..+...+.. ...-+...|...-.++.++ .++.+-.-..-+..++..|+..++-.+++.+-+.
T Consensus 224 ~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---- 292 (531)
T COG3898 224 VAERSRAVLLTAKAMS-LLDADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA---- 292 (531)
T ss_pred hHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence 1111122222222222 2223566777766666543 4555556667789999999999999999888775
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
+.||.. +.+|....--+.++.-++++-.+..- .++.......++...+..|++..|..-.+.+..
T Consensus 293 --ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 293 --EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred --CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 235544 34444444445566666666655322 445577788899999999999999998888888
Q ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004812 546 IYNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK 587 (729)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 587 (729)
..+.. .++..|+.+-... |+-.+...++-+++..
T Consensus 358 ~~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77654 5677788887665 9999999999988874
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=2.7e-07 Score=73.27 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004812 613 RYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 613 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 690 (729)
.|+++.|+.+|+++++. .|. ....++.+|.+|..+|++++|+.++++ ... ++......+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~ 64 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLL 64 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHH
Confidence 68999999999999998 442 455778899999999999999999998 443 46667888889
Q ss_pred HHHHHHhCCHhHHHHHHHHHH
Q 004812 691 AELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~a 711 (729)
|.++..+|++++|+ ..|+++
T Consensus 65 a~~~~~l~~y~eAi-~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAI-KALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHH-HHHHHH
T ss_pred HHHHHHhCCHHHHH-HHHhcC
Confidence 99999999999999 988875
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=3.1e-07 Score=72.88 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=69.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
.+|+++.|+.+|+++++..+. .. ....+..+|.+++..|++++|+.++++ ... ++......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 368999999999999987432 11 345777899999999999999999999 555 566677888889
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 004812 650 GTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~a 668 (729)
.++..+|++++|+..|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.56 E-value=0.0006 Score=66.96 Aligned_cols=299 Identities=15% Similarity=0.025 Sum_probs=207.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004812 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
|.+-.-.|+-..|.++-.++-.+...... ..++..-++.-...|+++.|..-|+-.+. ++.....-+.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqe------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLR 158 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQE------PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLR 158 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccch------HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHH
Confidence 44455678888899888888766554433 34566677888889999999999986652 2222222223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH-
Q 004812 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE- 515 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 515 (729)
.|-.--...|..+.|..|-+++... -|....++...-...+..|+++.|+++.+.......- +.+...
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi---e~~~aeR 227 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI---EKDVAER 227 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---chhhHHH
Confidence 3333345689999999999999887 5777788877778888999999999999877654211 111111
Q ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004812 516 -IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 516 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
.+..+...+.... .-+...|.....+++++.++. ...-..-+..++..|+..++-.+++.+.+. +.
T Consensus 228 ~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl-------vPaav~AAralf~d~~~rKg~~ilE~aWK~-----eP 294 (531)
T COG3898 228 SRAVLLTAKAMSLL-DADPASARDDALEANKLAPDL-------VPAAVVAARALFRDGNLRKGSKILETAWKA-----EP 294 (531)
T ss_pred HHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc-------chHHHHHHHHHHhccchhhhhhHHHHHHhc-----CC
Confidence 2222222222222 235777888888888876655 334456688999999999999999988774 22
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004812 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
+ +. ++.+|....--+.++.-++++-.+..- .|+..+.....+..-...|++..|..--+.+..+
T Consensus 295 H-P~-------ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--- 358 (531)
T COG3898 295 H-PD-------IALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--- 358 (531)
T ss_pred C-hH-------HHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---
Confidence 2 22 344455444445566666666554222 6788889999999999999999999988888765
Q ss_pred HcCCCChhHHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHhh
Q 004812 675 KLGTANPDVDDEKRRLAELLKEA-GRVRSRKAQSLETLLDA 714 (729)
Q Consensus 675 ~~~~~~p~~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~ 714 (729)
.|. ..++..|+.+-... |+..+.. .++-+++..
T Consensus 359 -----~pr-es~~lLlAdIeeAetGDqg~vR-~wlAqav~A 392 (531)
T COG3898 359 -----APR-ESAYLLLADIEEAETGDQGKVR-QWLAQAVKA 392 (531)
T ss_pred -----Cch-hhHHHHHHHHHhhccCchHHHH-HHHHHHhcC
Confidence 343 45677788887766 9999999 999999876
No 175
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=1.4e-05 Score=80.17 Aligned_cols=338 Identities=14% Similarity=0.056 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHh
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE-VQKQVL 342 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~ 342 (729)
..++...+..++..|+|.+|.+.+...--.. ..-+...+ ......|.++|.+++.+|.|.-+..+|.+|++ .+.++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4567778999999999999999886543221 11111111 11233478999999999999999999999996 433322
Q ss_pred CCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC---HHH
Q 004812 343 GET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD---HEA 410 (729)
Q Consensus 343 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~ 410 (729)
..- .....+++++.|..|...|+.-.|.++|.++...+..+. ..|..++.++....+ .++
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima~~~~l~ee 390 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMALQKGLLEE 390 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhhhhhhh
Confidence 110 123457889999999999999999999999999987764 568888888764321 111
Q ss_pred HHHHHHH--------------HHHHHH----hCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHh------
Q 004812 411 ALEHLVL--------------ASMTMI----ANDQDAEVASVDCSIGDTYLSLSRYDEA-GFAYQKALTAFKTN------ 465 (729)
Q Consensus 411 A~~~~~~--------------al~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~------ 465 (729)
......+ .+.+-. ..+........-..+|.++.+.+-+--- ...+...+......
T Consensus 391 ~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~ 470 (696)
T KOG2471|consen 391 GNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSS 470 (696)
T ss_pred ccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCC
Confidence 1111110 000000 0000000000111122222111100000 00011111100000
Q ss_pred ---------------cCC-------C--------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004812 466 ---------------KGE-------N--------HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (729)
Q Consensus 466 ---------------~~~-------~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (729)
.|. . ......++.+.+.+-..+|+.-.|+...++.++..+
T Consensus 471 ~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------- 540 (696)
T KOG2471|consen 471 SEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------- 540 (696)
T ss_pred CcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh----------
Confidence 000 0 012345666777788888999888888888877632
Q ss_pred HHHHHHHHHHHH-----HhcchHHHHHHHHHHHH--------HHHHhCCC--------------CC---------CcHHH
Q 004812 516 IASGLTDVSSIY-----ESMNELEQAIKLLQKAL--------KIYNDAPG--------------QQ---------STVAG 559 (729)
Q Consensus 516 ~~~~~~~la~~~-----~~~g~~~~A~~~~~~al--------~~~~~~~~--------------~~---------~~~~~ 559 (729)
...++..||.+| +.+.+..+|...+.--+ ......++ .. .....
T Consensus 541 lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v 620 (696)
T KOG2471|consen 541 LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGV 620 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHH
Confidence 234455555544 45667777766554310 00000000 00 11234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
.+++||.++.-+|++++|..++..|..+....... .+....-.+-+..|+...|+..+++..
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~------~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNV------QATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccH------HHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 57899999999999999999999999886532221 222222234456788888888777653
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.55 E-value=1.7e-06 Score=72.62 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 680 (729)
.+++.+|.++-..|+.++|+.+|++++.. +...+....++..+|..+..+|++++|+.++++++.-+ |++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36788999999999999999999999985 44456667899999999999999999999999998642 333
Q ss_pred hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+........++.++...|+.++|+ ..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl-~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEAL-EWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 336777778899999999999999 76665554
No 177
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.7e-05 Score=69.86 Aligned_cols=249 Identities=13% Similarity=0.047 Sum_probs=160.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004812 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
-++..|+|..++....+.-... . .......+.+.|..+|++...+.-...+ . .+. ..+...+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~---~------~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~-lqAvr~~ 78 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK---T------DVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATP-LQAVRLL 78 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc---c------hhHHHHHHHHHHHHcccccccccccccc-------c-CCh-HHHHHHH
Confidence 3455677777766554432211 1 1234667788888888877665443221 1 122 2233445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+.....-++.+.-+.-..+-+.. .........+..-|.+|...|++++|++.......+ .
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E 138 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E 138 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence 55555555554444433333222 112233345556678899999999999988774333 2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004812 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
+...-..++.++.+++-|...++++.++..+. ++..||..|.+. +.+..|.-+|++.-+ +
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c
Confidence 23334567788899999999999988886553 445566655542 356667766665443 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.++ ....++.++.++..+|+|++|...++.++.. ++...+++.++..+-...|...++.+-+-.-+.
T Consensus 203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 222 3568889999999999999999999999998 777888999999999999999887766554443
No 178
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.3e-06 Score=82.29 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
+++.|.-++..|+|..|...|...++. .|+.+....+++.||.+++.+|++++|...|..+++-+ +.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 677788888999999999999999987 44467788899999999999999999999999999866 78899
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..++++.||.++..+|+.++|. ..|+++++..|.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~ 247 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPG 247 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCC
Confidence 9999999999999999999999 999999999997
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.51 E-value=4.8e-06 Score=69.89 Aligned_cols=99 Identities=22% Similarity=0.166 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.+.+.+|.++...|+.++|+.+|++++.. +........++..+|..+..+|++++|+..+++++.. .
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence 35678999999999999999999999884 2223445678999999999999999999999999876 4
Q ss_pred hh---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 639 PD---TLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 639 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
|+ ...+...++.++...|++++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44 666778899999999999999999988774
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=7.6e-07 Score=72.59 Aligned_cols=97 Identities=30% Similarity=0.423 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
+++.+|.++...|++++|+..+++++.. .|....++..+|.++...+++++|+.+|++++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence 4678899999999999999999999987 4555688999999999999999999999999987322
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
...++..+|.++...|++++|..++.+++...
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 23678899999999999999999999887654
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0032 Score=68.70 Aligned_cols=230 Identities=16% Similarity=0.065 Sum_probs=129.1
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHH
Q 004812 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH 311 (729)
Q Consensus 232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (729)
...++ +.+|+....+.++- . |....+...-|..+.++|++++|..+++..-... .++ -..+
T Consensus 20 ld~~q-fkkal~~~~kllkk-------~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~tL 80 (932)
T KOG2053|consen 20 LDSSQ-FKKALAKLGKLLKK-------H--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLTL 80 (932)
T ss_pred hhhHH-HHHHHHHHHHHHHH-------C--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHHH
Confidence 34444 66666666655543 2 3334445556889999999999997766543332 222 2246
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004812 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
..+-.+|..++++++|..+|++++.. .|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+...
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y------ 145 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY------ 145 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc------
Confidence 77889999999999999999999988 577 677788888888888887655544333334333321
Q ss_pred HHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 392 AADRRLMGLICETKGDHEAALE-----HLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~-----~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
..|..+..+.......+.+.. +-++..+.. ...+.....+.+.. .-.++..+|++++|...+..-+.- ..
T Consensus 146 -yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~--~l 221 (932)
T KOG2053|consen 146 -YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAE--KL 221 (932)
T ss_pred -hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHH--hc
Confidence 124444444444444443333 122222211 11222222233322 234567789999999988433221 11
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+............+...++|.+-.++..+++..
T Consensus 222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1222222223344444555555554444444443
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=4.6e-06 Score=81.20 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=87.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 559 GIEAQMGVMY-YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 559 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
...+..+..+ ...|+|++|+..|+..+..++. ......+++.+|.+|+..|++++|+..|++++.. .|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC
Confidence 3445556554 6679999999999999987542 2334678999999999999999999999999987 344
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
++....+++.+|.++..+|++++|+..|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77788999999999999999999999999999874
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=5.1e-07 Score=67.62 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.+|..++..|++++|+..|+++++. +|....+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 8999999999999999999999999999999987
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=6.2e-07 Score=67.17 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+|..+...|++++|+..|+++++. +|....+++.+|.++..+|++++|+ ..|+++++.+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 35799999999999999999999954 7999999999999999999999999 999999999996
No 185
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00019 Score=67.20 Aligned_cols=301 Identities=12% Similarity=0.069 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004812 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (729)
..+|.-..+.+++++|+..|.+.+...-...+....+.-.+...++.+|...|++..-.+........+.... .+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence 3466667788899999999999887632222222223345678899999999998876666555443333222 233333
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 434 VDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 434 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
+...+-..+ .....++.-+..+...++.+.+.. ........-..++.++++.|+|.+|+......+.-+++ -++
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DD 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDD 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcC
Confidence 333332222 334567777888877777654321 01122334456788999999999999999998888777 344
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.+.....+..-..+|....+..++...+..|.......+-++...+.+-..-|.+++...+|.-|..+|-++++-+....
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 56667778888899999999999988888887776655444444455545557778888899999999999988654433
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFV 668 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 668 (729)
.........-|..+..+. .+..++-...+. .+++.+ +....+++...+.++.. +.+|..|+..|..-
T Consensus 241 ~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred chHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 321111111222333333 233333322222 222211 23445566666766643 34667777666654
Q ss_pred H
Q 004812 669 V 669 (729)
Q Consensus 669 l 669 (729)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=6.6e-05 Score=67.43 Aligned_cols=232 Identities=15% Similarity=0.074 Sum_probs=145.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
+...+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4455677888899999999999999999999999 7999999999999999999999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AIS 586 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~ 586 (729)
+|..-.+..+.|..++--|++.-|.+-+.+-.+-.+ .++... .|..+ -...-+..+|..-+.+ +..
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~---~DPfR~--LWLYl---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP---NDPFRS--LWLYL---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC---CChHHH--HHHHH---HHhhCCHHHHHHHHHHHHHh
Confidence 555567788889999999999999887765544433 332211 11111 1223466677655433 222
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004812 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
..+ .. +-|+.. . +-.|+..+ ...++++....+... .-.....++++.||..|...|+.++|..+|+
T Consensus 196 ~d~-------e~--WG~~iV-~--~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 196 SDK-------EQ--WGWNIV-E--FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred ccH-------hh--hhHHHH-H--HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 110 11 111111 1 11222211 122333332211100 0012234589999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004812 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702 (729)
Q Consensus 667 ~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~ 702 (729)
-++...-- +.-+..-+.+.|+.+...+.+..+
T Consensus 262 LaiannVy----nfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 262 LAVANNVY----NFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHhHH----HHHHHHHHHHHHHHhccccchhhh
Confidence 88764210 012223455556655555444333
No 187
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=5.4e-06 Score=73.18 Aligned_cols=119 Identities=23% Similarity=0.197 Sum_probs=99.0
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
.-+..+-.-|+.+|..|+ |++|..-|..||.+++.. +......+|.+.|.++++++.++.|+..+.+++++.
T Consensus 93 ~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--- 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--- 164 (271)
T ss_pred HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence 345667888999999998 999999999999997654 234567789999999999999999999999999996
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (729)
+....++.+.|.+|..+..|++|+..|.+.++. +|....+...++.+
T Consensus 165 ------pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 165 ------PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL 211 (271)
T ss_pred ------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence 234456788999999999999999999999998 67666665555544
No 188
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00029 Score=67.74 Aligned_cols=300 Identities=16% Similarity=0.119 Sum_probs=192.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004812 354 RYLAEAHVQALQFSEAQKFCQMALDIHKD--NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 431 (729)
...+.......++++++..+.+.+..... ..+......-.....+|.++...|+.++-..........+...+. +..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence 34444555566778888888887764211 111111122345678999999999998887777655443333222 222
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 432 ASVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 432 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
+.+...+-..+. .-+..+.-+..+..+++...+.. ........-..+..+|...++|.+|+......+.-.++.
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--- 161 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---
Confidence 333333333333 33455566777777777654432 012223445678899999999999999999998887773
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
++......++..=..+|+...+..+|...+..|.......+-++...+.+-..-|.++....+|.-|..||-+|.+-+..
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 34555667777778899999999999999888877766654444455555556678888889999999999999987776
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 004812 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILE 666 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 666 (729)
++... ....++-.|-.+-...+..++--.++. .+++. ......++...|.++.. +.+|+.|+.-|.
T Consensus 242 ~~~~v--~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 242 LDDDV--KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred cCCcH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 65542 223445555555556666666544443 33332 33445677888888754 346777777776
Q ss_pred HHH
Q 004812 667 FVV 669 (729)
Q Consensus 667 ~al 669 (729)
.-+
T Consensus 312 ~eL 314 (411)
T KOG1463|consen 312 KEL 314 (411)
T ss_pred HHH
Confidence 655
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.38 E-value=0.00027 Score=68.81 Aligned_cols=207 Identities=28% Similarity=0.390 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004812 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
.......+..+...+.+..+...+...+.. . ..+.....+..++..+...+++..++..+..++......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL--E-----LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h-----hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 455566666677777777777776666653 0 022334556666666666666677776666666543322
Q ss_pred CCcHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 554 QSTVAGIEAQMGV-MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 554 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.......+. ++...|+++.|...|.+++... .. .......+...+..+...+++..|+..+.+++..
T Consensus 129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 196 (291)
T COG0457 129 ----DLAEALLALGALYELGDYEEALELYEKALELD----PE-LNELAEALLALGALLEALGRYEEALELLEKALKL--- 196 (291)
T ss_pred ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence 111222233 6677777777777777764321 00 0112344444555566667777777777777776
Q ss_pred hcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004812 633 ECGPYHPD-TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 633 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.+. ....+..++.++...++++.|+..+..++... |.....+..++..+...|.++++. ..+..+
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 262 (291)
T COG0457 197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEAL-EALEKA 262 (291)
T ss_pred -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence 444 45566777777777777777777777777652 334445555666666666677777 777777
Q ss_pred Hhhcc
Q 004812 712 LDANS 716 (729)
Q Consensus 712 l~~~p 716 (729)
+..+|
T Consensus 263 ~~~~~ 267 (291)
T COG0457 263 LELDP 267 (291)
T ss_pred HHhCc
Confidence 76665
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=4.2e-05 Score=68.64 Aligned_cols=203 Identities=15% Similarity=0.065 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
..+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-------- 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-------- 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence 34566777788888888888888888888754 6778889999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHHH
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL-QKALKIYN 548 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~ 548 (729)
+|..-.+..+.|..+.--|++.-|.+.+.+-.+. ...+|... .|..+- ...-++.+|...+ +++.....
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhccH
Confidence 8988899999999999999999998887776655 22333322 222221 2234566666544 33333322
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
...| ...+-+.+ |+..+ ...++++....+. ...-......+++.+|..+...|+.++|..+|+-++.
T Consensus 199 e~WG----~~iV~~yL-------gkiS~-e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQWG----WNIVEFYL-------GKISE-ETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhhh----HHHHHHHH-------hhccH-HHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2211 11111222 22211 1223333222110 0001123457899999999999999999999999886
Q ss_pred H
Q 004812 629 I 629 (729)
Q Consensus 629 ~ 629 (729)
.
T Consensus 266 n 266 (297)
T COG4785 266 N 266 (297)
T ss_pred H
Confidence 5
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.36 E-value=2e-05 Score=64.43 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
...+-..|..+...|+ .+.|++.|.+|+.+. |..+.+|++.+..+.-+|+.++|+..+++++++. +
T Consensus 43 S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~---------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g 108 (175)
T KOG4555|consen 43 SRELELKAIALAEAGD-LDGALELFGQALCLA---------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----G 108 (175)
T ss_pred HHHHHHHHHHHHhccc-hHHHHHHHHHHHHhc---------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----C
Confidence 3455667778888887 999999999999987 5568889999999999999999999999999986 2
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
+. ......++...|.+|..+|+.+.|...|+.+-++
T Consensus 109 ~~-trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 109 DQ-TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred cc-chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 22 3445667999999999999999999999999877
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.36 E-value=0.00091 Score=65.00 Aligned_cols=229 Identities=26% Similarity=0.300 Sum_probs=166.4
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004812 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (729)
.+.+..+...+..++...... .........+..+...+++..+...+...... ...+.....+..++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence 355566666666665554332 11245777888889999999999988877643 23455667778888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
...+++..++..+..++.. .+.........+. ++...|+++.|...+.+++..... .......+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~ 171 (291)
T COG0457 106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL 171 (291)
T ss_pred HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence 8999999999988888875 2222233344444 899999999999999999663110 113355566
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.++..+...++++.|+..+.+++...+.. ....+..++..+...+++..|...+..++...+. ...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~ 237 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE 237 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence 66666888899999999999999887662 2466788899999999999999999999886432 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.+..++..+...+.++++...+.+++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666677777777899999999999988
No 193
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.35 E-value=0.002 Score=69.03 Aligned_cols=189 Identities=19% Similarity=0.125 Sum_probs=133.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH---HHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHhCCCCC
Q 004812 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA---SGLTDVSSIYE----SMNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
.+.--.|+-+.++..+.++.+. .. ...+... ..|+....... .....+.|.+.+......+|+.
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~-~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s---- 266 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKS-EN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS---- 266 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhcc-CC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc----
Confidence 3334568999999999988662 11 1122111 11111111111 2345677888888888887765
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004812 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (729)
+..+...|.++...|+.++|+..|++++...... ......++..++.++..+.+|++|..+|.+..+..
T Consensus 267 ---~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s---- 335 (468)
T PF10300_consen 267 ---ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES---- 335 (468)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc----
Confidence 4567788999999999999999999988543322 22345788999999999999999999999998861
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004812 635 GPYHPDTLGVYSNLAGTYDAIGRL-------DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 693 (729)
........+..|.|+...|+. ++|.++|.++-.+..+..|...|...-+.......
T Consensus 336 ---~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~ 398 (468)
T PF10300_consen 336 ---KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKY 398 (468)
T ss_pred ---ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHH
Confidence 223444566788899999999 99999999999988887776677655555544443
No 194
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.33 E-value=0.0002 Score=67.17 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
-+..++.-|...+..|++++|+..|+.+... -+..|....+...++..+.+.+++++|+..+++-+.++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence 3466788899999999999999999987754 1235566788999999999999999999999999999554
Q ss_pred CChHHHHHHHHHHHHHHHhc-----ch---HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESM-----NE---LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
++....+++..|.++... .+ ..+|+..|+..++.+|+.. . . ..|.....
T Consensus 104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~---Y-a-----------------~dA~~~i~ 160 (254)
T COG4105 104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR---Y-A-----------------PDAKARIV 160 (254)
T ss_pred --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc---c-h-----------------hhHHHHHH
Confidence 666677777777776642 22 3345555555555555431 1 0 11111111
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004812 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
.+... ++.--..+|..|.+.|.+..|+..++.+++.+.. .+....++..+..+|..+|-.++|.
T Consensus 161 ~~~d~-----------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 161 KLNDA-----------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHH
Confidence 11111 2233455788999999999999999999887443 4566678889999999999998887
Q ss_pred HH
Q 004812 663 EI 664 (729)
Q Consensus 663 ~~ 664 (729)
..
T Consensus 225 ~~ 226 (254)
T COG4105 225 KT 226 (254)
T ss_pred HH
Confidence 65
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=6.4e-06 Score=72.73 Aligned_cols=123 Identities=13% Similarity=0.241 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004812 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
-.-|.-++..|+|++|..-|..|+.+++.... .....+|.+.|.++.+++.++.|+....+++++ +|..
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence 44578889999999999999999998765443 335678899999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A 703 (729)
..++...|.+|.++..+++|++-|++.+++ +|....+...++++--......++
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999987 577667766666665444444433
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.31 E-value=2e-05 Score=64.46 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
.+-.-|.++...|+.+.|++.|.+++.+ .|..+.+|++.+..+..+|+.++|+..+++++++. +...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence 3455678888999999999999999999 68889999999999999999999999999999995 4445
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 6677889999999999999999999999988763
No 197
>PRK11906 transcriptional regulator; Provisional
Probab=98.29 E-value=3.9e-05 Score=78.16 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=123.6
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---HHHHHHhCCCCchHHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 004812 311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM 375 (729)
Q Consensus 311 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 375 (729)
++..|......+. .+.|+.+|.+|+ .+ +|..+.+|..+|.+++.. ....+|.++.++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4566666655543 467888899999 55 899999999999998865 234577788888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (729)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (729)
|+++.+.+ +.++..+|.+....++++.|+..|++|+.+ .|..+.+++..|.+....|+.++|++.+
T Consensus 330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88877654 467999999999999999999999999764 7888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 004812 456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCENA 500 (729)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a 500 (729)
++++++ +|....+-...-.+ .+-....+.|+.+|-+-
T Consensus 396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 999998 56544433322222 33345677888777543
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.28 E-value=2e-05 Score=67.14 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
...++.-|...+..|+|.+|++.|+..... -|..+....+...|+.+|...|++++|+..+++.+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 467788899999999999999999998776 22245566789999999999999999999999999875 88
Q ss_pred ChhHHHHHHHHHHHHHHhCC---------------HhHHHHHHHHHHHhhccc
Q 004812 680 NPDVDDEKRRLAELLKEAGR---------------VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~al~~~p~ 717 (729)
||....+++..|.++..+.. ..+|. ..|+.++...|+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~ 131 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPN 131 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcC
Confidence 99999999999999999887 88999 999999999998
No 199
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.8e-05 Score=81.14 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=102.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004812 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (729)
.+-.++...++++.|+.+|++..+. .+ .+...++.++...++..+|+..+.+++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3455566678899999888886653 12 24556899999999999999999999977 78888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
..+...|..+...++++.|+...++++.+ .|.....|+.|+.+|...|+++.|+ ..++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHhc
Confidence 89999999999999999999999999987 5999999999999999999999999 66653
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.7e-05 Score=75.94 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHH
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~ 675 (729)
.+.-|..||.+|+.+|++..|...|.+|+++ .|+...++..+|.++..+. ...++..++++++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---- 222 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---- 222 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----
Confidence 4678999999999999999999999999999 8888889999999887654 467899999999976
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 676 ~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|....+++.||..++..|++.+|. ..++.+++..|.
T Consensus 223 ----D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~ 259 (287)
T COG4235 223 ----DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA 259 (287)
T ss_pred ----CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence 7899999999999999999999999 999999999886
No 201
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.27 E-value=1.8e-05 Score=85.03 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004812 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI--------NEAVELFEEARSILEQECGPYHPDTLGV 644 (729)
Q Consensus 573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~~~~~~~~~~~~~ 644 (729)
++..|+.+|++|+++ .+.++.++..++.++.....+ ..+....++++.+ +.++....+
T Consensus 357 ~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~ 422 (517)
T PRK10153 357 SLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRI 422 (517)
T ss_pred HHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHH
Confidence 477899999999997 233566777777766554322 2333333333222 113444568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+..+|..+...|++++|...+++|+.+ +|. ..++..+|.++...|+.++|+ ..|++|+.++|.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~L~P~ 485 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 888899999999999999999999987 464 689999999999999999999 999999999998
No 202
>PRK11906 transcriptional regulator; Provisional
Probab=98.25 E-value=1.9e-05 Score=80.46 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=110.0
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Q 004812 561 EAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARS 628 (729)
Q Consensus 561 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~ 628 (729)
++..|......+. .+.|+.+|.+|+... . -.+..+.+|..++.+++.. .+..+|.++.++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS----D-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 3455655555553 456778888888321 1 1234677888888877654 245678888889998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
+ ++..+.++..+|.++...|+++.|...|++|+.+ +|+.+.+++..|.+....|+.++|. +.+
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i 395 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-ICI 395 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence 8 8999999999999999999999999999999987 7999999999999999999999999 999
Q ss_pred HHHHhhccc
Q 004812 709 ETLLDANSR 717 (729)
Q Consensus 709 ~~al~~~p~ 717 (729)
+++++++|.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 999999997
No 203
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.24 E-value=3.4e-07 Score=87.25 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=149.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004812 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
+-..|.-|+.+|.|++|+.+|.+++.. .|.++..+.+.|..|+++..|..|...++.|+.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence 355788999999999999999999998 7888999999999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004812 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
....+|...+..-..+|...+|.+-++.++++-+... .|-..+.......++.-. . +...+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----------ELkK~~a~i~Sl~E~~I~-~------KsT~G~ 224 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----------ELKKSLARINSLRERKIA-T------KSTPGF 224 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----------HHHHHHHHhcchHhhhHH-h------hcCCCC
Confidence 6788999999999999999999999999999877641 122222222222221100 0 011000
Q ss_pred ----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 595 ----KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 595 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.........-.-|..+...|.++.++.++-.-+.. ..+......+ +..|...-+++.|+.-.-+++.
T Consensus 225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~--------~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRAT--------IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred CccccchhhhccccCcchhhhhhhccccceeEeeccccc--------cCccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000111222355666677777777777665543 1122212222 6667777778888766655543
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 671 ~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
. .|........-+.+-.-.|...++. ..++.++.+.|.
T Consensus 296 ~--------~~s~~~~~s~~~~A~T~~~~~~E~K-~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 296 P--------KPTPMPDTSGPPKAETIAKTSKEVK-PTKQTAVKVAPA 333 (536)
T ss_pred C--------CCCcCcccCCCchhHHHHhhhhhcC-cchhheeeeccc
Confidence 2 1222222222233333445666777 777777777765
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=2e-05 Score=68.78 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
..+...+..|.-++..|++++|...|+-..-. ++...+.+..||.++..+++|++|+..|..+..+......
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 34566889999999999999999999987766 6778888999999999999999999999999998876654
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+ .+..|.++..+|+.+.|+..|..++.
T Consensus 107 p--------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 P--------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred c--------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4 78899999999999999999988864
No 205
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.013 Score=64.64 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh--------
Q 004812 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FKTN-------- 465 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~-------- 465 (729)
...|.-++..|.|+.|.-.|... .-+..|+..+..+|+|..|....++|-.. ++..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v--------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV--------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 34555566666666666555422 34556777788888888888877766432 2211
Q ss_pred -------cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHH
Q 004812 466 -------KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (729)
Q Consensus 466 -------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (729)
.|-+-.-.+.-+-.+...|...|-|++-+.+++.++-+-+. ..-.+..||.+|.+- ++++-.+
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHH
Confidence 11111122334556777888899999999999888877332 244567788777653 3344333
Q ss_pred HHHH---HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004812 539 LLQK---ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 539 ~~~~---al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
.++- -+.+-.-. .....+..|..+..+|.+-..|+.|
T Consensus 1334 Hl~LFwsRvNipKvi--RA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1334 HLKLFWSRVNIPKVI--RAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3321 11110000 0001235566677777776666665
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=98.23 E-value=1.2e-05 Score=70.04 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.....+..|.-++..|++++|..+|+-.... ++.....+..||.++..+++|++|+..|..+..+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~------ 101 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL------ 101 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 3456677888899999999999999988887 77778889999999999999999999999998762
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
++.+...+..|.+|..+|+.+.|. ..|+.++..
T Consensus 102 --~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~ 134 (165)
T PRK15331 102 --KNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER 134 (165)
T ss_pred --cCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence 444556899999999999999999 999999884
No 207
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=3.6e-05 Score=82.78 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHH
Q 004812 310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALD 378 (729)
Q Consensus 310 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~ 378 (729)
.++..|..+...++ +..|+.+|++|+++ +|+.+.++..++.+|.....+ ..+.....+++.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35666776666554 78999999999999 899999999988887664332 333334444333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
+..... . +.++..+|..+...|++++|...+++|+.+ .+. +.+|..+|.++...|++++|++.|++|
T Consensus 413 l~~~~~---~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPELNV---L---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cccCcC---C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 311111 1 356888899999999999999999999865 233 578999999999999999999999999
Q ss_pred HHH
Q 004812 459 LTA 461 (729)
Q Consensus 459 l~~ 461 (729)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 998
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.21 E-value=0.00067 Score=63.73 Aligned_cols=197 Identities=18% Similarity=0.150 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
.+..++.-|....+.|++++|+..|+....... ..+..-.+...++..+++.+++++|+..+++-+.++|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHP------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 356777888888889999999999998876532 23445678888999999999999999999999888876643
Q ss_pred CCCcHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 553 QQSTVAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
...+++..|.+++.. .|...+...+...-++..+.... .....+... +..+...+
T Consensus 107 ----~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~dA~~~--------------i~~~~d~L 166 (254)
T COG4105 107 ----ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAPDAKAR--------------IVKLNDAL 166 (254)
T ss_pred ----hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchhhHHHH--------------HHHHHHHH
Confidence 345556666665432 22333333333332222222111 111111111 11111111
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004812 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
+.-=..+|..|.+.|.+..|+..++.+++-+ ++.+....++..|..+|..+|-.++|. .
T Consensus 167 --------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~--~ 225 (254)
T COG4105 167 --------------AGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAK--K 225 (254)
T ss_pred --------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHH--H
Confidence 1122567899999999999999999999876 556778899999999999999999996 4
Q ss_pred HHHHHhhcc
Q 004812 708 LETLLDANS 716 (729)
Q Consensus 708 l~~al~~~p 716 (729)
..+.|..++
T Consensus 226 ~~~vl~~N~ 234 (254)
T COG4105 226 TAKVLGANY 234 (254)
T ss_pred HHHHHHhcC
Confidence 455565554
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.20 E-value=0.0003 Score=61.78 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=122.2
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004812 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
...+.=+.+.+..-..+.+++.|.. .-.+.||......|++.+|..+|++++. +........+..+
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLgl 130 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGL 130 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHH
Confidence 3344446666666666666666554 2367899999999999999999999873 3344455678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+...+..+++..|...+++..+.-. ....+.....+|..|...|++.+|...|+.++..+.. ..
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~ 194 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQ 194 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HH
Confidence 9999999999999999998887621 1233456677899999999999999999999998533 33
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
.....+..+..+|+.++|..-+....+...+.
T Consensus 195 ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 195 ARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 45556788889999999988777766655443
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=2.7e-05 Score=73.68 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
+++.|.-+++.|+|..|...|..-++.++ .....+.+++.||.+++.+|+++.|...|..+++- -|.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 67788888999999999999999888643 24456789999999999999999999999999886 344788
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
..++++.||.+...+|+.++|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999875
No 211
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.15 E-value=6.2e-06 Score=62.36 Aligned_cols=66 Identities=32% Similarity=0.415 Sum_probs=56.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004812 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 690 (729)
+..|++++|+.+|++++.. +|+...++..+|.+|...|++++|...+++++.. +|+....+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 5689999999999999999 8999999999999999999999999999999865 56666666555
Q ss_pred HH
Q 004812 691 AE 692 (729)
Q Consensus 691 a~ 692 (729)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=4.5e-05 Score=78.29 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=101.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004812 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
|-.++...++++.|+.++++..+..+. +...++.++...++..+|+..+.+++. ..|..+..+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence 344555678999999999998766532 356689999999999999999999884 234447888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (729)
...+..+...++++.|+.+.++++.+ .|.....|..|+.+|...|+++.|+..++.+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88999999999999999999999998 7999999999999999999999999777643
No 213
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.13 E-value=0.00053 Score=63.85 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=165.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004812 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400 (729)
Q Consensus 321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~ 400 (729)
....++|+.-|++++++- |+....-..++-.+..+++.+++|++-...|.+.+.........+... .+.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 347899999999999983 222334456778888899999999999999999987665433221111 11222222
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 004812 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----AVASV 476 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 476 (729)
.-....+.+--.++|+-.+..+....+.......-..+|.+|+..++|.+-...+.+.-.-++.-.|+++. ....+
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 22234455555666776666666666666556666789999999999999888888877777666555433 23455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004812 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG-LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
|..-.++|..+.+-.+-..+|++++.+-..+ .+|.+.-+ .-.=|..+.+.|+|++|-.-|-+|..-+...-....
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 5556678888888888888999999885443 24443332 333456788899999999999888888776633333
Q ss_pred cHHHHHHHHHHHHHHcC
Q 004812 556 TVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g 572 (729)
....-|..||..+.+.|
T Consensus 270 ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 44455667888887765
No 214
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.0063 Score=58.92 Aligned_cols=302 Identities=13% Similarity=0.077 Sum_probs=192.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004812 398 MGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (729)
.+.......++++++..|...+.........+ ..-.....+|..|...|+..+-..........+.... .+..
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kaka 86 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKA 86 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHH
Confidence 33344445566777777776654322222221 2234567899999999999887777776666655443 3444
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 474 ASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 474 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
+.....+-..... -+..+.-+.++..+++...+. .........-..+..+|...++|.+|+.+....+.-..+. +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-D 162 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-D 162 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-c
Confidence 4444444444443 345667788888888876542 1122223344568899999999999999999998888776 6
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
+...+..++..-..+|+...+..+|...+..|......+.-+ |...+..-..=|.++....+|..|..||-+|.+-+..
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 666666777777889999999999998888877665444332 2223333344467777778999999999999988766
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHH
Q 004812 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET 710 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~ 710 (729)
... ++....++-.+-.|-...+..++--.++..=..+. ......+++...|..+.. +.+++.|+ ..|+.
T Consensus 242 ~~~--~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL-~~yk~ 312 (411)
T KOG1463|consen 242 LDD--DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK------YAGRDIDAMKAVAEAFGNRSLKDFEKAL-ADYKK 312 (411)
T ss_pred cCC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh------ccCcchHHHHHHHHHhcCCcHHHHHHHH-HHhHH
Confidence 543 34444444444455555666665544443222221 123345677777777654 45677777 77766
Q ss_pred HHhhcc
Q 004812 711 LLDANS 716 (729)
Q Consensus 711 al~~~p 716 (729)
-+.-||
T Consensus 313 eL~~D~ 318 (411)
T KOG1463|consen 313 ELAEDP 318 (411)
T ss_pred HHhcCh
Confidence 666555
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.11 E-value=0.0038 Score=62.20 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=143.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc----CCC--CCHH
Q 004812 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDN----GSP--ASLE 390 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~----~~~--~~~~ 390 (729)
....|+++.|..++.++-..........-...+..+++.|......+ +++.|..++++++++.... ... ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877542211112346678899999999999 9999999999999996441 111 1234
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 391 EAADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
...++..++.+|...+.++....... ++... ...++++... ..--.++...++.+.+.+.+.+++.-..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 57788999999999988765554332 22222 2334444332 22223333378888888888888775210
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHH
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA--IKLLQKALKIY 547 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~ 547 (729)
..............+.. .....|...+...+...-.. ..+. .........-.+....++.... ++.+...+...
T Consensus 154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 01111111121222222 23456667776666543221 1111 1222222221111122222222 33333333332
Q ss_pred HhCCCCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 548 NDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 548 ~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
....+.+. ....++.+.|...++.++|+.|+.+|+-++.
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22222221 2234466789999999999999999997763
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.09 E-value=0.00011 Score=62.70 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
...++.-|...+..|+|.+|++.|+......+ .......+...++.+|+..+++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 45567889999999999999999988766432 23345678899999999999999999999999998 566
Q ss_pred ChhHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004812 638 HPDTLGVYSNLAGTYDAIGR---------------LDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 687 (729)
||....+++..|.++..+.. ..+|...|++.+..+ |+++...++.
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y-----P~S~ya~dA~ 139 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY-----PNSEYAADAR 139 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC-----cCChhHHHHH
Confidence 88888899999999988876 788888888888775 4444444443
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00014 Score=69.89 Aligned_cols=116 Identities=20% Similarity=0.178 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhc
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQEC 634 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 634 (729)
+.-|..||.+|..+|++..|...|.+|+++.. + ....+..+|.++..+. ...++..+|++++..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~----n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----- 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAG----D----NPEILLGLAEALYYQAGQQMTAKARALLRQALAL----- 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----C----CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence 56788999999999999999999999999732 1 3567778888777653 468999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004812 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 693 (729)
+|....+++.||..++.+|+|.+|+..++..++.. .++.|....+-..++..
T Consensus 223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999998753 34555544444444433
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00078 Score=62.61 Aligned_cols=140 Identities=14% Similarity=0.014 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
.+.+.++.++.-.+.|.-.+..+.+.++..+... ......+|.+..+.||.+.|..+|+...+..........
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch
Confidence 4566777888888999999999999988553322 345778999999999999999999987765555555566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
...+..+.+.+|.-.+++..|...|.+++.. ++..+.+.++.|.|+...|+...|++.++.+++...
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6677888899999999999999999999887 788889999999999999999999999999998843
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.07 E-value=0.006 Score=60.78 Aligned_cols=257 Identities=12% Similarity=0.063 Sum_probs=145.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-ChHHHHHHHHHhcccchh-----hccccch
Q 004812 231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI-----EEGQEHA 304 (729)
Q Consensus 231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~ 304 (729)
.+..|+ ++.|..++.++-.... ..+...-...+..+++.|......+ +++.|..+++++.++... ...++..
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 356776 9999999999988765 2111112567788999999999999 999999999999998532 2223333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
...+.++..++.+|...+.++...+ ...++.....-. |+....+..--.++...++.+.+.+.+.+++....-..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 5567889999999999988765444 334444443332 33333333333333347888888888888887643221
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHH
Q 004812 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL--SRYDEA--GFAYQKALT 460 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~ 460 (729)
.. . -.+...+-. ........|...+...+...-....+. ..... .+-.++... ++.... ++.....+.
T Consensus 156 ~~--~--~~~l~~i~~--l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 156 SN--F--DSILHHIKQ--LAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred ch--H--HHHHHHHHH--HHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 11 1 011111111 112234556666655553222221111 22221 122222222 222222 444444444
Q ss_pred HHHHhcC-CCChhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 461 AFKTNKG-ENHPAV----ASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 461 ~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
...+..+ +-.+.. ...+.+.|.-.++.++|++|..+|+-++.
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3332221 112222 23455668889999999999999998774
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0066 Score=56.67 Aligned_cols=240 Identities=13% Similarity=0.066 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcccchh----------hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----------EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL 335 (729)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 335 (729)
..|...-.++.++..+++|..-+...-+++.. .++......-+.....-|.+....|+..+.+.-+....
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 33444455566677777777665544433210 01111111123334556777778888888877666655
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004812 336 EVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 415 (729)
....++ -..+......+..+..+++-+.. +.+.+..++.-.|.|.-.+..+
T Consensus 150 ~~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~~--------------Vmy~~~~~llG~kEy~iS~d~~ 200 (366)
T KOG2796|consen 150 TVVSKI---------------LANLEQGLAEESSIRLWRKRLGR--------------VMYSMANCLLGMKEYVLSVDAY 200 (366)
T ss_pred HHHHHH---------------HHHHHhccchhhHHHHHHHHHHH--------------HHHHHHHHHhcchhhhhhHHHH
Confidence 543221 11111222224445555544432 3677888888899999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495 (729)
Q Consensus 416 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 495 (729)
.+.+. .+++........+|.+.++.|+.+.|..+|+++-+......+ -.....+..+.+.+|.-.+++..|..
T Consensus 201 ~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 201 HSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred HHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHHH
Confidence 88775 233444456678999999999999999999987766554432 34456677888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
.|.+++.. ++..+.+.++.|.|+...|+..+|++.++.++++.|..
T Consensus 274 ~~~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 274 FFTEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99998877 44456778899999999999999999999999887765
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.05 E-value=2.3e-05 Score=60.22 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=54.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
|..+|...+++++|++++++++.+ +|+....+..+|.++..+|++.+|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999999 8999999999999999999999999999999987
No 222
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.05 E-value=1.1e-05 Score=77.13 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 004812 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~ 683 (729)
-..|.-|+.+|+|++|+.+|.+++.. +|.....+.+.|.+|+++.+|..|...+..|+.+ +..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 44688999999999999999999998 8888889999999999999999999999999988 4678
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+|.+.+.+...+|+..+|. +.++.+|.+.|+
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~ 197 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAK-KDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcc
Confidence 899999999999999999999 999999999997
No 223
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.05 E-value=0.00058 Score=60.04 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
-.+.||......|++.+|...|++++.-. -......+..++...+..+++..|...+++..+..+....+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--- 160 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--- 160 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC---
Confidence 47889999999999999999999998652 23456778899999999999999999999998887655443
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (729)
.....+|..+...|.+.+|...|+.++..+. . .......+..+..+|+.++|..-+....+...+
T Consensus 161 ---d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 161 ---DGHLLFARTLAAQGKYADAESAFEVAISYYP------G-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred ---CchHHHHHHHHhcCCchhHHHHHHHHHHhCC------C-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2367889999999999999999998875421 1 234455688899999999998877776665443
No 224
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.04 E-value=0.0005 Score=64.04 Aligned_cols=240 Identities=13% Similarity=0.089 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004812 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (729)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (729)
+++|+.-|++++++- +.....-..++-.+..+++++|+|++-...|.+.+.........+.....+......
T Consensus 43 p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy--- 114 (440)
T KOG1464|consen 43 PKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY--- 114 (440)
T ss_pred HHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH---
Confidence 899999999998864 222233457788899999999999999999999987755444444443322222221
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH----HHHH
Q 004812 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAA 393 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~ 393 (729)
-....+.+--..+|+..+...+.. .++......-..||.+|+..++|.+-.+.+++.-..+....+.++. ....
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 122334444445666666554432 1122333455679999999999999888888877766555443322 2234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004812 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (729)
Q Consensus 394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (729)
+|..-..+|..+.+-..-...|++++.+....+.+.-...+.-.=|.++.+.|+|++|-.-|-+|.+-+...+.+ ....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhH
Confidence 455556677788888888888999987766665555455555556778899999999999998888877666532 2233
Q ss_pred HHHHHHHHHHHHHcC
Q 004812 474 ASVFVRLADMYNRTG 488 (729)
Q Consensus 474 ~~~~~~la~~~~~~g 488 (729)
..-|..||..+.+.|
T Consensus 272 CLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445666777777655
No 225
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.03 E-value=0.025 Score=58.48 Aligned_cols=441 Identities=13% Similarity=0.030 Sum_probs=237.5
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
.+....+|.+...|..+.+.+-.+ . +++..+.|++-+..+ |..+.+|.......+...+|+....+|.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345568899999999999877666 5 999999999988776 33455566667777888999999999999
Q ss_pred hcccchhhccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH--------
Q 004812 291 SIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-------- 361 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------- 361 (729)
+|.-. ..+..| +.|-.+....|+...+....-+|.++.....| -++.....|......+.
T Consensus 79 CLvkv----------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ 147 (656)
T KOG1914|consen 79 CLVKV----------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKY 147 (656)
T ss_pred HHHHH----------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccH
Confidence 98642 011112 22344445566666666666667666555444 23444444444443322
Q ss_pred -HhcCHHHHHHHHHHHHHHHHhcCCC--CCH--HHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhCCC-C-----
Q 004812 362 -QALQFSEAQKFCQMALDIHKDNGSP--ASL--EEAADRRLMG--LICETKGDHEAALEHLVLASMTMIANDQ-D----- 428 (729)
Q Consensus 362 -~~g~~~~A~~~~~~al~~~~~~~~~--~~~--~~a~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~~~~~~-~----- 428 (729)
...+.+.....|++|+..--.+... .+. ..-.+-..+| .+-.....|-.|...+++...+...... .
T Consensus 148 ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 148 EENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP 227 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 2335666677777776432111000 000 0000000111 1222334566677666665544332211 0
Q ss_pred ------hhHHHHHHHHHHHHHHc------CCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHH-------HHHHHHHHc
Q 004812 429 ------AEVASVDCSIGDTYLSL------SRY--DEAGFAYQKALTAFKTNKGENHPAVASVFV-------RLADMYNRT 487 (729)
Q Consensus 429 ------~~~~~~~~~la~~~~~~------g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~la~~~~~~ 487 (729)
......|.++-..-... |.. ..-.-.|++++..+ +..+.+|+ ..+.++...
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l--------~~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL--------GYHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhhHHHHHh
Confidence 01122222222111111 111 11122344444431 22233333 445555566
Q ss_pred CCHH-------HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHhCCCCCCcH
Q 004812 488 GKLR-------ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTV 557 (729)
Q Consensus 488 g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 557 (729)
|+.. ++..+|++++..... .....+..++..-...- +++.-..++++.+.+....+
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l~~--------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~------ 365 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGLLK--------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL------ 365 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC------
Confidence 6554 455555555544211 12223333333222221 25555666777666654332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
..++..+-..-.+..-...|...|.+|-+.-+. .++. .+...+- -|...++..-|...|+-.+..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~---~hhV---fVa~A~m-Ey~cskD~~~AfrIFeLGLkk-------- 430 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT---RHHV---FVAAALM-EYYCSKDKETAFRIFELGLKK-------- 430 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC---cchh---hHHHHHH-HHHhcCChhHHHHHHHHHHHh--------
Confidence 233445555555666677788888887653111 1111 2222222 244578999999999999988
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
+++....-......+...++-..|..+|++++.- .+ ........|..+-..-...|+..... +.-++-....|
T Consensus 431 f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~ 503 (656)
T KOG1914|consen 431 FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP 503 (656)
T ss_pred cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence 5555555566667788999999999999999864 11 11233456666666667778777766 55544444444
No 226
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.037 Score=61.37 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHhcCC
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS---ILEQECGP 636 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~ 636 (729)
-+-.+...|...|-|++-+.+++.++-+-+. ..-.+..||.+|.+- ++++-.++++-... +-+-+.
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviR-- 1349 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIR-- 1349 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHH--
Confidence 3456677788888888888888887776443 223456667666543 34444444332221 100000
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHH
Q 004812 637 YHPDTLGVYSNLAGTYDAIGRLDDAI 662 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (729)
..+.+..|..|..+|.+-..|+.|.
T Consensus 1350 -A~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1350 -AAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1223345666666666666666554
No 227
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.012 Score=55.56 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=154.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004812 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
..+|+-....+++++|+..|.+.+...-..-.....+...+...++.+|...|++..-.+......+...+...+ ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~---k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP---KI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch---hH
Confidence 456777778889999999998877551000000012344577889999999999877666665555554443322 11
Q ss_pred HHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 392 AADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 392 a~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
+.+...+-. +-.....++.-+..+...++........-.....-+.+..+++..|.|.+|+......+.-+++.. +.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence 222222222 223345677777777777666554443333444556788899999999999999999988887775 46
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+....++..-..+|....+..++..-+..|........ -++...+..-..-|.+++...+|.-|..+|-++++-+...
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l 239 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL 239 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence 67777888888999999999999988888877765542 1122233333444666777889999999999998876543
No 228
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.029 Score=67.97 Aligned_cols=411 Identities=11% Similarity=0.052 Sum_probs=205.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004812 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
.+|..-++-+. |..|+-++++- .....+.......+..+-.+|...++++........-....
T Consensus 1388 tLa~aSfrc~~-y~RalmylEs~------~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH------RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---------- 1450 (2382)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHh------ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc----------
Confidence 56667777776 77777777763 01111112223445556668999999988777666311110
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.+...-......|++..|..+|+++++. +|+....+...-......|.+...+...+-......+
T Consensus 1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence 1444556677889999999999999887 4544433443334444445555555433222211110
Q ss_pred CCCHHHHHHHHHH-HHHHHHhCCHHHHHHHHH-----------HHHHHHHhCCCChhHHHHHHHHHH----------HHH
Q 004812 386 PASLEEAADRRLM-GLICETKGDHEAALEHLV-----------LASMTMIANDQDAEVASVDCSIGD----------TYL 443 (729)
Q Consensus 386 ~~~~~~a~~~~~l-g~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~----------~~~ 443 (729)
+. .-++.+ -.+.++.++++.-..+.. .+.........+. ...+..+.. ...
T Consensus 1516 ----~~-~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 ----EV-DELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred ----HH-HHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence 00 111111 122244455544443321 0000000000000 000000000 001
Q ss_pred HcCCHHHHHHHHHHHHHHHHH------h----cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004812 444 SLSRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
..|-|..+.++.-+...+.+- . .+.+.......|.+....-....+..+-+-.+++++-..... ....
T Consensus 1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence 111233333333322222110 0 011111111222222222112222444444455554433221 1335
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-G 592 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~ 592 (729)
.....+|...|++....|+++.|..++-.|.+.. ...++...|..+..+|+-..|+..+++.+.....- .
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 6678999999999999999999999988887654 24677889999999999999999999999765332 1
Q ss_pred CC--------CChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----------
Q 004812 593 ER--------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY---------- 652 (729)
Q Consensus 593 ~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------- 652 (729)
.. +......+...++......+++ ..-+.+|..+.++ +|.....++.+|..|
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence 11 1111222344445555555553 4556778888887 554444555555433
Q ss_pred --HHcCChHH---HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 653 --DAIGRLDD---AIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 653 --~~~g~~~~---A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
...|++.. |+-.|.+++..-.+..-..-|.....|..+|...
T Consensus 1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~ 1856 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHI 1856 (2382)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchh
Confidence 33456555 5555556654322222223355555555544433
No 229
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.90 E-value=0.022 Score=59.44 Aligned_cols=151 Identities=10% Similarity=0.036 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQ 632 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 632 (729)
....+..+..++.+..+.|+++.|...+.++.......... ...+....+.+....|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 34556788999999999999999999998877643211111 235666778999999999999999998888 3332
Q ss_pred h-------------------------cCCCChhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 633 E-------------------------CGPYHPDTLGVYSNLAGTYDAI------GRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 633 ~-------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
. ..........++..+|...... +..++++..|.+++.+ +|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence 2 0111234456777888888777 8889999999999987 57
Q ss_pred hHHHHHHHHHHHHHHhCCHh-----------------HHHHHHHHHHHhhccc
Q 004812 682 DVDDEKRRLAELLKEAGRVR-----------------SRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~-----------------~A~~~~l~~al~~~p~ 717 (729)
....+++.+|..+...-+.+ .|+ ..|-+++...+.
T Consensus 290 ~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai-~~y~~al~~~~~ 341 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAI-EGYLKALSLGSK 341 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHH-HHHHHHHhhCCC
Confidence 77788888888876542222 255 666666666655
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.90 E-value=4.2e-05 Score=77.85 Aligned_cols=69 Identities=22% Similarity=0.152 Sum_probs=63.5
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD---DEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~---~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
.+|+...+++++|.+|..+|++++|+..|++++++ +|+.. .+++++|.+|..+|++++|+ .+|+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAl-a~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAA-DCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 37888999999999999999999999999999988 46655 56999999999999999999 99999999
Q ss_pred h
Q 004812 714 A 714 (729)
Q Consensus 714 ~ 714 (729)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 7
No 231
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.89 E-value=3.9e-05 Score=58.89 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|..+|...+++++|+.++++++.+ +|+....+..+|.++...|++.+|. ..|+.+++.+|+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCC
Confidence 457899999999999999999987 6889999999999999999999999 999999999997
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.89 E-value=4.6e-05 Score=77.54 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG---VYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+..+..++++|.+|..+|+|++|+..|++++++ +|+... +|+++|.+|..+|++++|+.++++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999 777764 5999999999999999999999999986
No 233
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.039 Score=60.64 Aligned_cols=230 Identities=17% Similarity=0.116 Sum_probs=141.1
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004812 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
..++|.+|+..+.+.++..|+.. .+...-|..+.++|+.++|..+++.. .. ..+..-..+..+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-----~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEAL-YG-----LKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhh-cc-----CCCCchHHHHHHHHH
Confidence 45789999999999998887653 34666788899999999999666532 21 122234566778899
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
|..++++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+. ++++++.. +... ...|.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~--pk~~---yyfWs 149 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNF--PKRA---YYFWS 149 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC--Cccc---chHHH
Confidence 99999999999999999987 566 67777778888888877654433 33333321 1112 22333
Q ss_pred HHHHHHHhcchHHHHHH-----HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 522 DVSSIYESMNELEQAIK-----LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
-+..+.......++... +.++..+..-...|.....+++. ..-.++..+|++++|...+..-+ .......
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~l--a~~l~~~-- 224 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITL--AEKLTSA-- 224 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHH--HHhcccc--
Confidence 34444444333333322 22222222222223222333332 23345667899999998884322 2222111
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.....+.....+...++|.+-.++..+++..
T Consensus 225 --~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 225 --NLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred --chHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1223344566777788888888888887776
No 234
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.83 E-value=3.5e-05 Score=51.58 Aligned_cols=41 Identities=44% Similarity=0.707 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
+.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 45789999999999999999999999999999999999985
No 235
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=6.1e-05 Score=56.87 Aligned_cols=53 Identities=30% Similarity=0.374 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
+..|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999998 7999999999999999999999999999999887
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.039 Score=53.58 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=128.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004812 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (729)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (729)
+.+..-.|++.+|-...++.++-+|... .++..--.+++..|+...-...+++.+. .-+.+.|-...+.-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHH
Confidence 4455667899999999999999887664 3456666788889998888888876642 11445666677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004812 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (729)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (729)
.++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.++..+.-...+.. ....
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~mla 246 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WMLA 246 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHHH
Confidence 8899999999999999999999998 78888999999999999999999999888765554321 2223
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
..-|-..|.++...+.|+.|++.|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 3345567888888899999999998643
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.81 E-value=0.059 Score=56.12 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004812 598 FFGVALNQMGLACVQR------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (729)
..+.++..+|...... +..++++..|.+++.+ +|....+++.+|..+...
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 3456777788877777 8899999999999999 888888999999887654
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.085 Score=56.19 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEV-----QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
.|..||......-.++-|...|-++-.. .+++ .....--...|.+-..-|+|++|.+.|..+-+..
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 3778888877777777787777665322 1110 0000011233445555688888888875442211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (729)
.-..++...|+|-...++++.. ....++.....++.++|..+..+..|++|.++|.+.
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112344455555544444321 112233445566667777777777777777766543
No 239
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.72 E-value=0.082 Score=54.83 Aligned_cols=397 Identities=10% Similarity=-0.018 Sum_probs=202.9
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
|....+|+.|-.-+..+ -++++...|++.+... +..+. +|...........+|+....+|.++|.-.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvL-- 84 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVL-- 84 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--
Confidence 55677888887777666 8999999999999876 33333 477777778888999999999999987621
Q ss_pred hCCCCchHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH---------HHhCCHHHH
Q 004812 342 LGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC---------ETKGDHEAA 411 (729)
Q Consensus 342 ~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~---------~~~g~~~~A 411 (729)
....| ..|-.+....++...+.....+|.+..-...+- .+....+|...+..+ ....+.+..
T Consensus 85 -------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v 156 (656)
T KOG1914|consen 85 -------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAV 156 (656)
T ss_pred -------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence 12222 233444445556555555555555544332221 111112233222221 222355556
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHH-----------HH--HHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---------
Q 004812 412 LEHLVLASMTMIANDQDAEVASVDCS-----------IG--DTYLSLSRYDEAGFAYQKALTAFKTNKGEN--------- 469 (729)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~-----------la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 469 (729)
...|++|+.. +- ...-..|.. .| .+-.....|..|...+++...+.+-..-.+
T Consensus 157 RriYqral~t----Pm-~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 157 RRIYQRALVT----PM-HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHhcC----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 6677777531 00 001111110 11 122233456667777766655543221100
Q ss_pred -ChhHHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH------
Q 004812 470 -HPAVASVFVRLADMYNRTG------KL--RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE------ 534 (729)
Q Consensus 470 -~~~~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~------ 534 (729)
.......|.++...-...+ .. ..-.-.|++++..+.-. ..-..+....+...+.++...|+..
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 0011222333322211111 11 11222345555442110 0001112333444556666666644
Q ss_pred -HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004812 535 -QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 535 -~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
++..+|++++...... ...+++.++..-...- .++.--.++++++.+... + ...++..+-..-
T Consensus 310 ~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~----~---~tLv~~~~mn~i 376 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI----D---LTLVYCQYMNFI 376 (656)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc----C---CceehhHHHHHH
Confidence 4555555555443222 1222333332222211 244455566666554321 2 223444444555
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004812 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 690 (729)
.+..-...|...|.+|.+.-. .+...-+...+-. |..+++.+-|...|+-.+..+ ++.|... ...
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf-----~d~p~yv---~~Y 441 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKR------TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF-----GDSPEYV---LKY 441 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc-----CCChHHH---HHH
Confidence 555567888888888876411 1212222222222 556889999999999888764 3344444 444
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 691 AELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 691 a~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
...+...++-..|. ..|++++..
T Consensus 442 ldfL~~lNdd~N~R-~LFEr~l~s 464 (656)
T KOG1914|consen 442 LDFLSHLNDDNNAR-ALFERVLTS 464 (656)
T ss_pred HHHHHHhCcchhHH-HHHHHHHhc
Confidence 66778888888888 889988876
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.72 E-value=0.0016 Score=66.55 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc--
Q 004812 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-- 303 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 303 (729)
......++.. ++++-+++..+||++. |+.+.+|..|+.-. ..-..+|..+|+++++..+...+...
T Consensus 173 ~IMq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 173 EIMQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3334445554 4999999999999986 44577777766532 23467888888888876544333221
Q ss_pred --------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004812 304 --------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 304 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
....+.+...+|.|..++|+.++|++.++..++... ..+...++.+|..++...+.|.++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence 112244567899999999999999999999987731 124667899999999999999999
Q ss_pred HHHHHHH
Q 004812 370 QKFCQMA 376 (729)
Q Consensus 370 ~~~~~~a 376 (729)
..++.+.
T Consensus 315 q~lL~kY 321 (539)
T PF04184_consen 315 QALLAKY 321 (539)
T ss_pred HHHHHHh
Confidence 9888774
No 241
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.71 E-value=0.073 Score=54.01 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH-HHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004812 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQ-LGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (729)
+..-|-++..++++.+|...|.+..+-. ...+. ..-.++.+ +-++| -+ +.+...+..+...++..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~-----~~~~f~lkeEvl~grilnAf-fl----~nld~Me~~l~~l~~~~--- 75 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEK-----ESSPFLLKEEVLGGRILNAF-FL----NNLDLMEKQLMELRQQF--- 75 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHh-----hcchHHHHHHHHhhHHHHHH-HH----hhHHHHHHHHHHHHHhc---
Confidence 4456888999999999999999987653 11111 11112222 22222 22 33444444454444443
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CCHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004812 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---ASLEE----AADRRLMGLICETKGDHEAALEHLVLA 418 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~----a~~~~~lg~~~~~~g~~~~A~~~~~~a 418 (729)
|.........|.+.++.++|.+|++.+............+ ..... -..-...+.++...|.+.++...+++.
T Consensus 76 -~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 76 -GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred -CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 4455666777888999999999999887665543332211 00000 111234577888999999999999988
Q ss_pred HHHHHh
Q 004812 419 SMTMIA 424 (729)
Q Consensus 419 l~~~~~ 424 (729)
+..+-.
T Consensus 155 ~~~llk 160 (549)
T PF07079_consen 155 IERLLK 160 (549)
T ss_pred HHHHhh
Confidence 765544
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.0034 Score=64.29 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=119.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 004812 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (729)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (729)
..+..+...-++...+|+++ .++.+.+|..||.- ...-..+|.++|+++++..+...+...
T Consensus 178 AWRERnp~aRIkaA~eALei---------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~-------- 238 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI---------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ-------- 238 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh---------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh--------
Confidence 34556778888888999998 45556777666642 234468899999999988766543211
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--hH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP--DT 641 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~ 641 (729)
.....|..-+.. .. .+......+-..+|.+..++|+.++|++.++..++. .| +.
T Consensus 239 ---~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------~p~~~~ 294 (539)
T PF04184_consen 239 ---FLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------FPNLDN 294 (539)
T ss_pred ---hhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCccch
Confidence 111112111110 00 011113455677899999999999999999998876 33 35
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCC---------------HhHHHH
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE-AGR---------------VRSRKA 705 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~-~g~---------------~~~A~~ 705 (729)
..++.+|..++..++.|.++...+.+.-++ .-|..+...+.-|.+..+ .|+ ...|.
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~av- 366 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAV- 366 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHH-
Confidence 668999999999999999999888875432 135556666655544332 222 12456
Q ss_pred HHHHHHHhhccc
Q 004812 706 QSLETLLDANSR 717 (729)
Q Consensus 706 ~~l~~al~~~p~ 717 (729)
+.+.+|++.||.
T Consensus 367 eAi~RAvefNPH 378 (539)
T PF04184_consen 367 EAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHhCCC
Confidence 788999999998
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.65 E-value=0.13 Score=55.25 Aligned_cols=172 Identities=16% Similarity=0.087 Sum_probs=118.7
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 404 TKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
-.||-+.++..+.++.. ..+-....+ ..|+.....+. .....+.|.+.+...... .|....
T Consensus 200 F~gdR~~GL~~L~~~~~---~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~l 268 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK---SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSAL 268 (468)
T ss_pred cCCcHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHH
Confidence 45889999998887743 111111111 11111111111 234556677777776665 688888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
.+...|+++...|+.++|+..|++++...... ......++..++.++..+.+|++|..++.+..+... .
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~------W 337 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK------W 337 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc------c
Confidence 99999999999999999999999988532221 223456788999999999999999999998887422 2
Q ss_pred cHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhCCCCCh
Q 004812 556 TVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
..+...+..|.++...|+. ++|..+|.++-.+..+......+
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3355567789999999999 88888888887776665444444
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00065 Score=62.39 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDT-------LGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.++..-|.-++..|+|.+|...|+.|+..++.+.-. ..|+. ...+.+.++|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 466777889999999999999999999988776533 23332 23678999999999999999999998886
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 671 ~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
. +|.+..+++..|.+....=+..+|. ..|.++|+++|.
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPS 296 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChh
Confidence 5 7999999999999999999999999 999999999997
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.61 E-value=0.047 Score=60.14 Aligned_cols=279 Identities=16% Similarity=0.101 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHH
Q 004812 324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-----LQFSEAQKFCQMALDI---HKDNGSPASLEEAADR 395 (729)
Q Consensus 324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~---~~~~~~~~~~~~a~~~ 395 (729)
...|..+++.+... ....+...+|.+|..- .+.+.|+.+|+.+... ...... ..+.
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------~~a~ 291 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------PPAQ 291 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC------Cccc
Confidence 46788888877665 3456667777777654 5899999999999872 111111 1346
Q ss_pred HHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Q 004812 396 RLMGLICETKG-----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 396 ~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 467 (729)
+.+|.+|.... ++..|+.+|.++.. .....+.+.+|.++..-. ++..|..+|..|...
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHh--------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 78899988753 77889999988853 222356678888887755 567899999888764
Q ss_pred CCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Q 004812 468 ENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQK 542 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 542 (729)
....+.+.+|.+|.. .-+...|..++.++.+. + + +.+...++.++..- ++++.+.-.+..
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~------g--~---~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK------G--N---PSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc------c--C---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence 345778888888875 35788999999999887 2 1 22333344433322 666666665554
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----C
Q 004812 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----Y 614 (729)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 614 (729)
.....-.... ..+..+.......... .+...+...+.++... ....+...+|.+|..- .
T Consensus 423 ~a~~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 423 LAELGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHHhhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCC
Confidence 4443322210 0011111111111111 1344455555544332 1346777888888754 3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHHH
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G--RLDDAIEILEFVVGI 671 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~~ 671 (729)
+++.|...|..+... . ....+++|.++..- | .+..|..+|.++...
T Consensus 490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 699999999999876 3 77899999998752 1 267888888888753
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.60 E-value=0.0082 Score=53.35 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCCCh
Q 004812 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS-DSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.+...|......++...++..+++++.++...+-..... ..|- .....+...
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~~------------- 60 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLREL------------- 60 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHHH-------------
Confidence 344456666677888999999999998886442111000 1111 111222211
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
...++..++..+...|++++|+..+++++.. +|....++..+..+|..+|+..+|+..|+++...+.+-+|
T Consensus 61 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 61 -YLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp -HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 3356777888999999999999999999999 9999999999999999999999999999999999888777
Q ss_pred CC
Q 004812 678 TA 679 (729)
Q Consensus 678 ~~ 679 (729)
..
T Consensus 132 ~~ 133 (146)
T PF03704_consen 132 IE 133 (146)
T ss_dssp --
T ss_pred cC
Confidence 43
No 247
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.16 Score=62.15 Aligned_cols=357 Identities=11% Similarity=0.033 Sum_probs=184.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.+|.+-++.+.|.+|+-++++- ... +......-..++.+-.+|...++++.-.-....-.. +|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~-----ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RST-----EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS- 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccc-----cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc-
Confidence 6788889999999999999985 111 111112222355566689999999876665543111 122
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
+...-..+...|+|..|..+|++++...+..... +...-......|.+...+.+.+-... ...
T Consensus 1452 ---l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~------~~s 1514 (2382)
T KOG0890|consen 1452 ---LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII------NRS 1514 (2382)
T ss_pred ---HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh------ccC
Confidence 2334445667899999999999999887764321 22223333444555555443322110 111
Q ss_pred hHHHHHHHHH-HHHHHcCCHHHHHHHHH-------HHH---HHHHHhcCCCChhHHHHHHHHHHHH----------HHcC
Q 004812 430 EVASVDCSIG-DTYLSLSRYDEAGFAYQ-------KAL---TAFKTNKGENHPAVASVFVRLADMY----------NRTG 488 (729)
Q Consensus 430 ~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al---~~~~~~~~~~~~~~~~~~~~la~~~----------~~~g 488 (729)
+...-++.++ .+-...++++.-..+.. .+. .+.-... ..+....+..+.... ...|
T Consensus 1515 e~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~---~kD~~~~~~~i~~~r~~~i~~lsa~s~~~ 1591 (2382)
T KOG0890|consen 1515 EEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNK---KKDEIATLDLIENSRELVIENLSACSIEG 1591 (2382)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhc---ccchhhHHHHHHHHHHHhhhhHHHhhccc
Confidence 1111122221 12244444444433311 000 0000000 000011101111100 0011
Q ss_pred CHHHHHHHHHHHHH---------HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 489 KLRESKSYCENALR---------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 489 ~~~~A~~~~~~al~---------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
-|..+.++.-+..- ...+..++.+......-|.+....-....+..+-+-.+++++-.....++....++.
T Consensus 1592 Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge 1671 (2382)
T KOG0890|consen 1592 SYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGE 1671 (2382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHH
Confidence 22223222222211 111111111111111122222222122223444555556665555444455678899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC--
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GP-- 636 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-- 636 (729)
+|...|.+....|+++.|..++-.|.+.. .+.++...|..++..|+-..|+..+++.+....... ++
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 99999999999999999999988887641 356788899999999999999999999997654321 11
Q ss_pred CChh------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHH
Q 004812 637 YHPD------TLGVYSNLAGTYDAIGRL--DDAIEILEFVVGIR 672 (729)
Q Consensus 637 ~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~ 672 (729)
+.|. ...+...++......|++ .+-+.+|+.+.++.
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 0111 112445555666666664 34456677777663
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.56 E-value=0.0053 Score=63.60 Aligned_cols=110 Identities=23% Similarity=0.286 Sum_probs=80.9
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
......+|..+..+..-+.+|..+|+ ..+|..++..|+-...... . -.++..+|.++.+.|...+|--++..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~-~~~A~~Ca~~a~hf~~~h~------k-di~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGE-PYQAVECAMRALHFSSRHN------K-DIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCC-hhhhhHHHHHHhhhCCccc------c-cchhhhHHHHHHHcccccchhheeeh
Confidence 44455677777666655555556665 9999999999998753321 1 23466789999999999999988888
Q ss_pred hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
|+.-.....+ -++.++.++..++.+...+.+|..+.+.
T Consensus 275 A~~dA~~~t~---------n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 275 ALDDADFFTS---------NYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred hccCCccccc---------cceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 7765422222 2778999999999999999999888776
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.54 E-value=0.012 Score=59.67 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCC
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
..+..++-..|....+|+.-+.+.+..-.+ +... ......+...+|.++.+ .|+.++|+..+..++... ..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~---~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD---EN 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---CC
Confidence 445667777888889998887777655443 1110 11123455677888888 999999999998875431 11
Q ss_pred CCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 594 RKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (729)
..+.++..+|.+|... ...++|+..|.++.++ +++. ..-.+++.++...|...+...-
T Consensus 215 ----~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~~~-Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 215 ----PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EPDY-YSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred ----CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cccc-cchHHHHHHHHHcCCcccchHH
Confidence 2346777788877542 2367788888887776 4432 2446777778888865555544
Q ss_pred HHHHHHHHHHHcC----CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 665 LEFVVGIREEKLG----TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 665 ~~~al~~~~~~~~----~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++........+| ...-.....+..++.+..-.|++++|. +.+++++.+.|.
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l~~~ 337 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCc
Confidence 4444422222222 112233445567788888899999999 999999999887
No 250
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.003 Score=58.17 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----Ch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----SA------FFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
.++..-|.-+++.|+|.+|...|..|+..++.+.-.. +. .....+.+++.|++..|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4556778899999999999999999999887652221 11 1233678899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 688 (729)
. +|.+..+|+..|.+....=+..+|...|.+++++ +|....+..
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--------dpslasvVs 302 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--------DPSLASVVS 302 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------ChhhHHHHH
Confidence 8 9999999999999999999999999999999987 566554443
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.056 Score=54.93 Aligned_cols=206 Identities=11% Similarity=0.042 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 004812 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525 (729)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 525 (729)
..+..+...+.+.+...+...+...-....+..++-..|....+|+.-+.+.+..-.+- ..+......+....|.
T Consensus 113 e~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 113 ERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHHH
Confidence 33444455555566555555533233445566777778999999998888877665541 1112233445667777
Q ss_pred HHHh---cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCC
Q 004812 526 IYES---MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 526 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 593 (729)
++.+ .|+.++|+..+..++..... ....++..+|.+|... ...++|+..|.++.++-+
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc----
Confidence 7777 89999999999887554322 1245667777777542 235667777777766521
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE----QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
. ...-.+++.++...|...+...-.++....+. +....+.....+.+..++.+..-.|++++|+..+++++
T Consensus 258 ---~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 258 ---D--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred ---c--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 12234555566666654433333333331111 11111233444566778888889999999999999999
Q ss_pred HH
Q 004812 670 GI 671 (729)
Q Consensus 670 ~~ 671 (729)
.+
T Consensus 333 ~l 334 (374)
T PF13281_consen 333 KL 334 (374)
T ss_pred hc
Confidence 76
No 252
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.49 E-value=0.00023 Score=47.48 Aligned_cols=41 Identities=44% Similarity=0.531 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 640 (729)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999998885
No 253
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00073 Score=61.98 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004812 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
+..-|..++...+|+.|+..|.+++.+ +|..+..+.+.+.+|++..+++.+.....+++++ .+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~ 75 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP 75 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence 344567777888999999999999998 8999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004812 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
..+...+.+|........|++|+..+.++..+....+
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7789999999999999999999999999999887653
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0013 Score=63.36 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004812 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
.+.-+-.-|.-|+...+|..|+..|.+.|... ..++...+.+|.+.|.+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 46667778999999999999999999999875 4455566778999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+|....+++.-|.+++.+.++.+|..+++..+.+...
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999999998776643
No 255
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.45 E-value=0.018 Score=46.71 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=86.4
Q ss_pred HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004812 349 VGETCRYLAEA--HVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 349 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
++.+|..|+.. .+..|-|++|...+.+++++.......... -.+.++-.|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45566665544 445688999999999999998776654322 236788889999999999999999999999877
Q ss_pred HhCCC-C----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 423 IANDQ-D----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 423 ~~~~~-~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
...+. + .....+.++.|..+...|+.++|+..|+.+-++.....|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 65443 2 2334556778899999999999999999999987766543
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.13 Score=50.01 Aligned_cols=167 Identities=8% Similarity=-0.064 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004812 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (729)
.-+.+.+..|++.+|...+++.++- .|....++..--.+++..|+...-...+++.+..... +.+-..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~----dlp~~s 175 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA----DLPCYS 175 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC----CCcHHH
Confidence 3455667789999998889998877 5777777777777888899988888888877655322 223334
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (729)
...-.++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.++..+.-...+.. .-.
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~ml 245 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WML 245 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHH
Confidence 45566778888999999999999988764 45556777889999999999999999988876665432 344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENAL 501 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (729)
....|...|.++...+.|+.|++.|.+-+
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 55667788999999999999999998654
No 257
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0042 Score=60.03 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=94.8
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
+.++..+..+-.-|.-|++..+|..|+..|.+++.. + -.++...+..|.+.|-+.+..|+|..|+.-..+++.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--k--c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--K--CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--c--CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 444556677777899999999999999999999874 2 2234567889999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999887764
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.029 Score=50.36 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=95.9
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHHHHHHHhCC-----------C--CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 564 MGVMYYMLGNY---SDSYDSFKNAISKLRAIGE-----------R--KSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 564 la~~~~~~g~~---~~A~~~~~~al~~~~~~~~-----------~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
.|.-|+...+. .+|-..|+++++....-.. . ...+-..+...++..+...+++++|+..++.++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44445544433 3666667766665421111 1 122233455677888999999999999999998
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004812 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
..... ..-...+-.+||.+...+|.+++|+..+..... +..........|.++...|+.++|. ..
T Consensus 117 ~~t~D-----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar-~a 181 (207)
T COG2976 117 AQTKD-----ENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAAIVAELRGDILLAKGDKQEAR-AA 181 (207)
T ss_pred ccchh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHHHHHHHhhhHHHHcCchHHHH-HH
Confidence 65211 122334667899999999999999998886543 2233445566799999999999999 99
Q ss_pred HHHHHhhccc
Q 004812 708 LETLLDANSR 717 (729)
Q Consensus 708 l~~al~~~p~ 717 (729)
|++++..++.
T Consensus 182 y~kAl~~~~s 191 (207)
T COG2976 182 YEKALESDAS 191 (207)
T ss_pred HHHHHHccCC
Confidence 9999998654
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.037 Score=49.72 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
....++..+...+++++|+..++.++.... +......+-.+||.+...+|.+++|+..+..... +.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~ 156 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES 156 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence 345678889999999999999998886422 2334566778899999999999999988876543 23
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.........|.++...|+.++|+..|++++..
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 44445678899999999999999999999986
No 260
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0013 Score=60.42 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004812 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
..-|..++.-..|..|+.+|.+++.+ .+..+..+.+.+.++++..+++.+..-..+|+++ .|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence 34566777778899999999999986 3445678899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+..++.||.+......|++|+..+.++..+.+..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999887654
No 261
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.39 E-value=0.04 Score=44.78 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=87.3
Q ss_pred HHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 516 IASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 516 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
++.+|..|+.. ....|-|++|...+.+++++....|.... .-+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34556555554 34567899999999999999988765442 335567789999999999999999999999988
Q ss_pred HHhCCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 589 RAIGERKSA---FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 589 ~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
..-++-+.. ....+.+..+..+...|+.++|+..|+.+.++.....|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 876655432 23445567788999999999999999999998776554
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.38 E-value=0.0075 Score=55.09 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
+-++.-++-++...+ ......++..+|..|.+.|+++.|++.|.++.+.. .........+..+..+....++
T Consensus 17 ~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCC
Confidence 334444444443332 46667889999999999999999999999988873 3356678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
+.....++.++..+.... +++.....+...-|..++..++|..|...|-.+...
T Consensus 89 ~~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 999999999999988774 555555556667788888899999999988776543
No 263
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.38 E-value=0.00098 Score=58.89 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 692 (729)
|+.|.+.++..... +|...+.+++.|.++..+.++ .++..+++.++.-+++.+. -+|+..++++.||.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 56777777777777 899999999999988776544 3455555555554444332 16899999999999
Q ss_pred HHHHhCC-----------HhHHHHHHHHHHHhhccc
Q 004812 693 LLKEAGR-----------VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 693 ~~~~~g~-----------~~~A~~~~l~~al~~~p~ 717 (729)
+|...+. +++|. .+|++|.+.+|.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~ 112 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT
T ss_pred HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCC
Confidence 9987764 66788 899999999997
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=0.032 Score=61.41 Aligned_cols=268 Identities=16% Similarity=0.105 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-----ChHHHHHHHHHh
Q 004812 221 GPLLLKQARELISS----GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-----QYNEAIPVLEQS 291 (729)
Q Consensus 221 ~~~l~~~a~~~~~~----g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a 291 (729)
......+|.+++.- .+|.+.|+.++..|...+.+..... ...+.+.+|.+|.+.. ++..|+.+|.++
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 34445556555443 2459999999999988432221111 1335778899998854 678899999999
Q ss_pred cccchhhccccchHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh----c
Q 004812 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA----L 364 (729)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 364 (729)
.... . ..+.+.+|.++.... ++..|..+|..|... ....+.+.+|.+|..- -
T Consensus 320 A~~g-----~------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 320 AELG-----N------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVER 378 (552)
T ss_pred HhcC-----C------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcCC
Confidence 8774 1 224778888888765 578999999988766 3557888888887643 4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
+...|..++.++.+... +.+...++.++... +.+..+.-.+.......... ....+..+........
T Consensus 379 ~~~~A~~~~k~aA~~g~----------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~--~q~~a~~l~~~~~~~~ 446 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN----------PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV--AQSNAAYLLDQSEEDL 446 (552)
T ss_pred CHHHHHHHHHHHHHccC----------hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH--HhhHHHHHHHhccccc
Confidence 78899999999887652 12244444444333 77777666654443221111 0111111111111111
Q ss_pred Hc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004812 444 SL----SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEE 515 (729)
Q Consensus 444 ~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (729)
.. .+...+...+.++.. .....+...||.+|..- .+++.|...|..+... .
T Consensus 447 ~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~-- 505 (552)
T KOG1550|consen 447 FSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G-- 505 (552)
T ss_pred cccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h--
Confidence 11 133444444444432 44567778888888764 4588999999888776 2
Q ss_pred HHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHH
Q 004812 516 IASGLTDVSSIYESM---NELEQAIKLLQKALKIY 547 (729)
Q Consensus 516 ~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~ 547 (729)
+....++|.++..- ..+..|..++.++.+..
T Consensus 506 -~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 506 -AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred -hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 66788899888651 22788888888877643
No 265
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.30 E-value=0.0055 Score=57.74 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY-----HPDTLGVY 645 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 645 (729)
...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|++.+.+..... .-+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 457888999998888775554443 446788999999999999999888888888888887765422 22445688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+.+|.++.+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999874
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.35 Score=51.76 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=72.3
Q ss_pred CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh----hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (729)
Q Consensus 258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 333 (729)
..|+|.. |..+|......-.++-|...|-+.-..... ..+.-+ .--...|.+-..-|+|++|.+.|-.
T Consensus 688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-----s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-----SKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-----hHHHHhHhHhhhhcchhHhhhhhhc
Confidence 4577665 666777777777788888888776544210 000000 0123455666667888888888765
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 004812 334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (729)
Q Consensus 334 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 413 (729)
+-.. +.+ ..++.+.|+|-...++++.. ..+.++...-.++..+|..+..+..+++|.+
T Consensus 760 ~drr----------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 760 ADRR----------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchh----------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4222 110 12344455555444443221 1122233344567777777777777777777
Q ss_pred HHHHH
Q 004812 414 HLVLA 418 (729)
Q Consensus 414 ~~~~a 418 (729)
+|.+.
T Consensus 818 yY~~~ 822 (1189)
T KOG2041|consen 818 YYSYC 822 (1189)
T ss_pred HHHhc
Confidence 77654
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.28 E-value=0.0048 Score=58.15 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=82.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-----ChhHHHH
Q 004812 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA-----NPDVDDE 686 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~p~~~~~ 686 (729)
....+++|++.|.-|+-...-... .+...+.++..+|++|..+|+.+....++++|+..+.+.+... .-+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~-~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKE-KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345789999999999877554433 3556778999999999999999999999999999988877422 2244678
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 687 KRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 687 ~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.+.+|.+..+.|++++|. .+|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~-~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAK-RWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHHcC
Confidence 899999999999999999 999999865
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.00074 Score=45.51 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 692 (729)
.++..+|.+|..+|++++|+..|+++++. +|++..++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36889999999999999999999999987 6888889988875
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.24 E-value=0.00067 Score=45.71 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (729)
.++..+|.+|...|++++|+++|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8999999988875
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.22 E-value=0.021 Score=52.19 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
++.-+.....+........++..+|..|...|+++.|++.|.++.+.... .......+..+..+....+++....
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33333433444556677788999999999999999999999998876322 3456778889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.++.++-.+... +.+..........-|..+...++|.+|-..|-.+...+
T Consensus 94 ~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 94 KYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999877 33344444555566777778899999998887765443
No 271
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.19 E-value=0.43 Score=50.64 Aligned_cols=393 Identities=13% Similarity=0.041 Sum_probs=231.0
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV 287 (729)
Q Consensus 208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 287 (729)
..+.......|-.-..|...|..-++.|. .+.++..|++++..+... .+. ....++.+--..|+.+.-...
T Consensus 66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S------vdl--W~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS------VDL--WLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH------HHH--HHHHHHHHhccCCCHHHHHHH
Confidence 44556667889999999999999999996 999999999999877422 111 122234444456778888888
Q ss_pred HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-----
Q 004812 288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----- 362 (729)
Q Consensus 288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----- 362 (729)
|++|+.......-. + ..|-..-..-..++++..-...|++.++.-.. ...-++..-.-+..
T Consensus 137 fe~A~~~vG~dF~S-~-----~lWdkyie~en~qks~k~v~~iyeRileiP~~--------~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 137 FERAKSYVGLDFLS-D-----PLWDKYIEFENGQKSWKRVANIYERILEIPLH--------QLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HHHHHHhcccchhc-c-----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhh--------HhHHHHHHHHHHHhcCChh
Confidence 99988775221111 1 12333444446778888888888888877211 11111111000111
Q ss_pred -hcCHHHHHHHHHHHHH---------------HH-HhcCCC-CCHHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 004812 363 -ALQFSEAQKFCQMALD---------------IH-KDNGSP-ASLEEAAD-----RRLMGLICETKGDHEAALEHLVLAS 419 (729)
Q Consensus 363 -~g~~~~A~~~~~~al~---------------~~-~~~~~~-~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~al 419 (729)
....+++...-..... .. .....+ ........ ....-.++...-...+.+..++..+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 1122222222211111 00 000000 00111110 0011111222222333333333332
Q ss_pred HHH--HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 420 MTM--IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 420 ~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
... ...+..+.....|..........|+++...-.|++++-- -......|...+......|+.+-|...+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 111 112234455566777777888899999999999999876 3556788899999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004812 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
..+.++..+. ...+...-+.+-...|+++.|...+++...-++.. ..+-..-.......|+.+.+
T Consensus 355 ~~~~~i~~k~--------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 355 ARACKIHVKK--------TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HhhhhhcCCC--------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhh
Confidence 9998886542 23445556777778899999999999988776433 23333445566677888777
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
.. +......... +..+.......+...+... .-.++.+.|...+.+++++ .|.....+..+..+...++
T Consensus 420 ~~-~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 420 NY-KNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hH-HHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence 75 2222222111 2222333445555555543 3467899999999999998 7777777777666665554
No 272
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.48 Score=49.66 Aligned_cols=221 Identities=12% Similarity=0.022 Sum_probs=135.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
.+..+..+...|+.+.|+..++.++....+ .-..-+++.+|.++..+.+|..|-..+....+...-..
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------ 337 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------ 337 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence 566788888888888999999988873222 23445778899999999999999999888776653221
Q ss_pred HHHHHHHHH-HHHH--------HhCCHHHHHHHHHHHHHHHHhCCC-ChhHHH----------------------HHHHH
Q 004812 391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIANDQ-DAEVAS----------------------VDCSI 438 (729)
Q Consensus 391 ~a~~~~~lg-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~----------------------~~~~l 438 (729)
+ .|..++ .++. ..|+.+.|..+++....+....+. .|.... -++.+
T Consensus 338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 1 122222 2221 234666666666655544443211 111100 01122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+ |...|=..-+.....++...++...-.+......-+..+|.++..+|+...|..+|..+++..... ..++...+.
T Consensus 416 ~--Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~Pf 491 (546)
T KOG3783|consen 416 A--YFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAVPF 491 (546)
T ss_pred H--HHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccccH
Confidence 2 222211111111111222211111111334455667788999999999999999999988653332 344556788
Q ss_pred HHHHHHHHHHhcch-HHHHHHHHHHHHHHHHh
Q 004812 519 GLTDVSSIYESMNE-LEQAIKLLQKALKIYND 549 (729)
Q Consensus 519 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 549 (729)
+++.+|.+|..++. ..++..++.+|.....+
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 99999999999998 99999999999887643
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.10 E-value=0.00049 Score=43.15 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004812 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
+|++|+++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47899999 99999999999999999999999963
No 274
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.09 E-value=0.034 Score=49.33 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 334 (729)
+...|......|+.+.++..+++++.+....+-+..+ ...+.++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344556667788899999999998886432222110 123445677888899999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004812 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
+.. +|..-.++..+..+|...|+...|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998877654
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.01 E-value=0.64 Score=49.42 Aligned_cols=388 Identities=11% Similarity=-0.033 Sum_probs=217.9
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
|.....|...|..-.++|..+.+...|++++.-. + ..+..|. .++.+....|+.+.-...|++|+.....
T Consensus 76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p----~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~ 146 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----P----LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL 146 (577)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----h----hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence 5556667788888999999999999999998764 1 1111222 2334444667777777778887776422
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+ -.....|-..-.....++++..-...|++.+++-...... ++..-.-+.. .+...-+-..+++..
T Consensus 147 ----d-F~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~--------~f~~f~~~l~-~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 147 ----D-FLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR--------HFDRFKQLLN-QNEEKILLSIDELIQ 212 (577)
T ss_pred ----c-hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH--------HHHHHHHHHh-cCChhhhcCHHHHHH
Confidence 1 1222344444444466778888888888888765332210 1110000000 000011111111111
Q ss_pred HHHhCC------CChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004812 421 TMIAND------QDAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 421 ~~~~~~------~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
+..... ........+ ..+-.+-...+.++++...+.+...+ .=.++...-...+.
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK 274 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence 100000 000000000 00000000111122222222221111 11223333444555
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004812 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (729)
+..++..+...-... ....+.....|......-...|+++...-.|++++--+... ...|...+......|+
T Consensus 275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD 346 (577)
T ss_pred HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence 555666554322211 12233345567777777788999999999999998766544 4678888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
.+-|...+..+.++... . ...+...-+......|++..|...+++...- -|....+-..-+....
T Consensus 347 ~~~~~~~~~~~~~i~~k----~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVK----K---TPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER 411 (577)
T ss_pred hhHHHHHHHhhhhhcCC----C---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence 99998888888776432 1 2234455577778889999999999998877 5777777777788888
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhH-HHHHHHHHHH-HHHhCCHhHHHHHHHHHHHhhccc
Q 004812 654 AIGRLDDAIEILEFVVGIREEKLGTANPDV-DDEKRRLAEL-LKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~-~~~~~~La~~-~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++|+.+.+..+ ...+... .-|..++.. ...+...++. +.-.++.+.|. ..+.++++..|.
T Consensus 412 r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 412 RKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD 473 (577)
T ss_pred HhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence 99999888852 2222211 112233332 3334445544 44567888888 999999999887
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.01 E-value=0.0016 Score=40.96 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+++++|.++..+|++++|+ ..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence 357899999999999999999 999999999995
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.98 E-value=0.01 Score=52.64 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChHHHHHH
Q 004812 599 FGVALNQMGLACVQRYS----------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----RLDDAIEI 664 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~ 664 (729)
.+..+++.|.++..+.+ +++|+.-|++|+.+ +|+...+++++|.+|..++ +..+|..+
T Consensus 24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 46677777777776543 34555555555555 8999999999999997765 44455566
Q ss_pred HHHHHHHHHHH
Q 004812 665 LEFVVGIREEK 675 (729)
Q Consensus 665 ~~~al~~~~~~ 675 (729)
|++|...+++.
T Consensus 96 F~kA~~~FqkA 106 (186)
T PF06552_consen 96 FEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.97 E-value=0.0092 Score=59.43 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
+|..+.....+.+..+.|..+|.+|+.. . .....+|...|.+.+. .++.+.|...|+.+++. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-----~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-----K---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-----C---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence 4566667777777799999999999631 1 1123567778888666 56666799999999998 5
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.....+......+...|+.+.|..+|++++... +........|......-...|+.+... ...+++.+..|+
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence 6666777888888999999999999999998652 111213567888888889999999888 888888888775
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.096 Score=50.51 Aligned_cols=138 Identities=19% Similarity=0.109 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.....+..+..+...|+ +.+|...+..++... ++...+...++.||...|+.+.|...+...-.-.
T Consensus 133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---- 198 (304)
T COG3118 133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---- 198 (304)
T ss_pred HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence 33455677888899997 999999999999875 3335667789999999999999999998743322
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004812 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
.......+.+...+..-....++..+. ++.+.. +|+...+.+.+|..+...|+.+.|.+.+-..+..
T Consensus 199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l----~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 199 -QDKAAHGLQAQIELLEQAAATPEIQDL----QRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred -hhhHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111111222222222333333322 222222 6888999999999999999999999998877776
Q ss_pred HHhcC
Q 004812 380 HKDNG 384 (729)
Q Consensus 380 ~~~~~ 384 (729)
.....
T Consensus 266 d~~~~ 270 (304)
T COG3118 266 DRGFE 270 (304)
T ss_pred ccccc
Confidence 55443
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.91 E-value=0.0028 Score=39.84 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
+.+|..+|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999999
No 281
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.53 Score=50.01 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=34.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+..++...++|.+|..+.++- |.....++...|..+....++++|.+.|.+|-.
T Consensus 779 iVqlHve~~~W~eAFalAe~h-----------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKH-----------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred HhhheeecccchHhHhhhhhC-----------ccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 445666777777776655432 333445666677777777778888777766644
No 282
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.017 Score=57.49 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA 472 (729)
Q Consensus 394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (729)
+|..+.....+.+..+.|..+|.+|+. .......+|...|.+.+. .++.+.|..+|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 456666777777789999999999852 233344677788888666 56666699999999998 466
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
....|......+...++.+.|..+|++++..... ......+|......-...|+.+....+.+++.+.++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6778888889999999999999999999876321 2223556777778888889999999999998888765
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.84 E-value=0.0026 Score=39.94 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+++.+|.++...|++++|+ ..|++++.++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence 357899999999999999999 999999999985
No 284
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.77 E-value=0.032 Score=44.95 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=63.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (729)
.....|+|..|++.+.+............ ....++.++|.++...|++++|+..+++++.+.++.. |......++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al 84 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYAL 84 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHH
Confidence 34678999999999999988776665554 5667788999999999999999999999999999876 234444444
Q ss_pred HHHHHH
Q 004812 478 VRLADM 483 (729)
Q Consensus 478 ~~la~~ 483 (729)
..+..+
T Consensus 85 ~~~~~l 90 (94)
T PF12862_consen 85 SWLANL 90 (94)
T ss_pred HHHHHH
Confidence 444443
No 285
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=1 Score=48.03 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004812 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (729)
..+.+.|...++..+ |..++++|...+..+... .-+...+.....++.||..+.+.+.|.+++++|-+.. +
T Consensus 355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R 425 (872)
T ss_pred HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence 456788888899886 999999999999876432 2225568888999999999999999999999998775 3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 339 (729)
..+.. ...+-.+....|.-++|+.+.........
T Consensus 426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 33322 34455666778889999998888776643
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.70 E-value=0.0016 Score=40.76 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004812 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (729)
Q Consensus 330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (729)
+|++++++ +|....+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37888888 89999999999999999999999863
No 287
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.69 E-value=0.037 Score=44.60 Aligned_cols=83 Identities=17% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004812 360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
....|+|..|++.+.+.++......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999887776543 123456688899999999999999999999999999999888877777666
Q ss_pred HHHH
Q 004812 439 GDTY 442 (729)
Q Consensus 439 a~~~ 442 (729)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6543
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.64 E-value=0.0051 Score=39.18 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
++.+||.+|..+|++++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999987754
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.58 E-value=0.0055 Score=38.41 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.++..+|.++...|++++|+++|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.52 E-value=0.0071 Score=38.53 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
++..||.+|...|+|++|+.+|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478899999999999999999999998776543
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.27 E-value=1.7 Score=44.70 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--SFKNAIS 586 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 586 (729)
+.+....+.-+..-|.-+...|. -++|+.+++.+++..+-.. .+ -+.... +-...|.+|+. .+.+.+.
T Consensus 372 DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec-~n~v~~-fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 372 DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------EC-ENIVFL-FVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HH-HHHHHH-HHHHHHHHHHhhhhHHHHHH
Confidence 33455566677777888888887 7889999988887754331 11 111111 11122333322 2223333
Q ss_pred H---HHHhCCCC-ChHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004812 587 K---LRAIGERK-SAFFGVALNQM--GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 587 ~---~~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
+ ....+-.. .......-+.+ |..++.+|+|.++.-+-.-..++ .| ...++..+|.++....+|++
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHH
Confidence 2 22222111 01112233334 45567899999999888888887 77 66799999999999999999
Q ss_pred HHHHHHHH
Q 004812 661 AIEILEFV 668 (729)
Q Consensus 661 A~~~~~~a 668 (729)
|..++...
T Consensus 514 A~~~l~~L 521 (549)
T PF07079_consen 514 AWEYLQKL 521 (549)
T ss_pred HHHHHHhC
Confidence 99998754
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.26 E-value=0.0098 Score=37.25 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+++.+|.+|...|++++|. .+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~-~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEAL-EYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 57899999999999999999 999999999983
No 293
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.22 E-value=3.5 Score=47.88 Aligned_cols=345 Identities=14% Similarity=0.023 Sum_probs=160.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-------ChHHHHHHHHHhcccchhhccc
Q 004812 229 RELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-------QYNEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 229 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~ 301 (729)
.+++.... |++|+..|++....++.. .+-..+.+.+|.....+- .+.+|+.-|++.-.- +
T Consensus 483 ~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 549 (932)
T PRK13184 483 DAFLAEKL-YDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------V 549 (932)
T ss_pred HHHHhhHH-HHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------C
Confidence 34444443 666666666655544222 223456777777766532 355555555554322 3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH----HHHHHHHHhcCHHHHHHHHHHHH
Q 004812 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR----YLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al 377 (729)
..|.. |...|.+|..+|++++-+++|.-|++.+.+ +|......- .|-.+.+. +-..|..+.--++
T Consensus 550 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 618 (932)
T PRK13184 550 GAPLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRLRDHLVYRLHESLYK--HRREALVFMLLAL 618 (932)
T ss_pred CCchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33333 888999999999999999999999998644 566544332 22222222 2234444444445
Q ss_pred HHHHhcCCCCCHH------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004812 378 DIHKDNGSPASLE------------------------EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (729)
Q Consensus 378 ~~~~~~~~~~~~~------------------------~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (729)
.+.|......... ....-..+ .+.+..|..---.+.++++.. ..+. .
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~-~ 689 (932)
T PRK13184 619 WIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMEL-FLSFWSGFTPFLPELFQRAWD-------LRDY-R 689 (932)
T ss_pred HhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHH-HHHHHhcCchhhHHHHHHHhh-------cccH-H
Confidence 4444432211000 00000000 011122222222333333322 1111 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-----PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
++.+.-.+...+|.++-+..+....-+......-+.. +.....+..-..+......++++.+.+...-
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 762 (932)
T PRK13184 690 ALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD------- 762 (932)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC-------
Confidence 5566666777888887777666655544443321111 1111122222233344456666665443321
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
+.....++...+.-....++.+.-....+.... ... ..............+|+...++++|-+++..--. -
T Consensus 763 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 833 (932)
T PRK13184 763 ----PTLILYAFDLFAIQALLDEEGESIIQLLQLIYD-YVS---EEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL-D 833 (932)
T ss_pred ----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHh-ccC---ChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh-h
Confidence 111122222333333333332222222222111 111 1111122334455667777888888887743211 1
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
.-..+ ...++...|-.+...++-+-|..+|..+.
T Consensus 834 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 834 LLLDE-----YSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred hhccc-----cchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 11111 12344444555556677777777777665
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.4 Score=46.41 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
-..-+.-....|++.+|...|..++...++. ..+...++.+|...|+.+.|...+...-.-.. ...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~ 202 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA 202 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence 3344556678899999999999999988766 45677899999999999999888765321110 000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
...+.....++.+.....+... +++.+.. +|+...+.+.||..|...|+.++|.+.+-..+.. -.|..
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~ 270 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFE 270 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccc
Confidence 1111111122222222222222 2233333 7888999999999999999999999887665543 22222
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
...+...|-.++...|..+.+.
T Consensus 271 ---d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 271 ---DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred ---CcHHHHHHHHHHHhcCCCCHHH
Confidence 2345556666666666555444
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.07 E-value=0.84 Score=45.99 Aligned_cols=170 Identities=18% Similarity=0.125 Sum_probs=116.8
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004812 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDP 347 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (729)
+......+++..|...+..+-... . ......++.+|..- .+..+|+.+|+.+...
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~-------~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------- 106 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELG-------D----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------- 106 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcC-------C----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------
Confidence 334456678888998888877632 1 13466777777653 4678899988854433
Q ss_pred hHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhC-------CHHHHHHHHH
Q 004812 348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLV 416 (729)
Q Consensus 348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------~~~~A~~~~~ 416 (729)
....+.+.||.+|.. ..++.+|..+|.++........ ..+...++.+|..-. +...|+..|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 456788889998887 4489999999999987642211 234677777776642 2336888887
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 417 LASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (729)
Q Consensus 417 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (729)
++.... ...+...+|.+|.. ..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 180 ~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 775422 44677888887755 34899999999999886 22 67777888 666655
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.04 E-value=0.017 Score=36.12 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.+|+.+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999886
No 297
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=2.7 Score=44.98 Aligned_cols=107 Identities=17% Similarity=0.089 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...+.+-|.-.++..+|..++++|...+.... .+............++.||..+.+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-------
Confidence 34455667888999999999999999987642 12222334667889999999999999999999999888
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+|...-....+-.+....+.-++|+.+.........+
T Consensus 424 -d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 -DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 6666667777777777889999999998887766544
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.91 E-value=1.4 Score=44.36 Aligned_cols=166 Identities=18% Similarity=0.160 Sum_probs=111.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
...+++..|...+.++-.. ..+ .....++.+|.. ..+..+|..+|..+.+. ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~ 110 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAE 110 (292)
T ss_pred cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHH
Confidence 3456677777777766552 112 556667777765 34578888888855443 2345
Q ss_pred HHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 004812 519 GLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-------NYSDSYDSFKNAISK 587 (729)
Q Consensus 519 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~ 587 (729)
+.+.||.+|.. ..++.+|..+|.++...-.. .. ......++.+|..-. +...|...|.++...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 67789998887 45899999999999876322 11 233566777776542 233677777777664
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 588 LRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
. ...+...+|.+|.. ..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 2 34677888877765 34899999999999886 22 56778888 666665
No 299
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.90 E-value=0.008 Score=61.46 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=87.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 004812 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (729)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~ 684 (729)
.-+.-.+.-+.|+.|+..|.+|+++ +|..+..+.+.+.++.+.+++..|+.-+.+++++ +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3455666778999999999999999 9999988899999999999999999999999986 69999
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+|++-|......+++.+|+ ..|+....+.|+
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPN 104 (476)
T ss_pred heeeeccHHHHhHHHHHHHH-HHHHHhhhcCcC
Confidence 99999999999999999999 999999999887
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.80 E-value=0.62 Score=48.05 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=109.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHH
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA--DMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
..|....++..++.++..+|+...|.+.+++|+-.++... ++.......++. .+...-..
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~---~~~F~~~~~~~~~g~~rL~~~~--------------- 96 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF---HPSFSPFRSNLTSGNCRLDYRR--------------- 96 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HHHhhhhhcccccCccccCCcc---------------
Confidence 4677788999999999999999999999999998876554 333222111111 11111111
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
..+.....++......+.+.|-+..|+++.+-.+.+.+.. ++ ..++..+-....+.++|+--+..++..
T Consensus 97 ------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 97 ------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred ------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 1122345566667778888999999999998888887652 11 234445555666778887777776654
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHH
Q 004812 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSI---------------NEAVELFEEARSI 629 (729)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~ 629 (729)
....... .-...+...+.++.+++..++- +.|...+++|+..
T Consensus 166 ~~~~~~~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 166 LAKCYRN---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhh---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 4421100 0000123445567777777777 8999999999988
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.74 E-value=0.018 Score=35.65 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++++.+|.++...|++++|+ ..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence 46889999999999999999 999999999985
No 302
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.59 E-value=4.9 Score=44.62 Aligned_cols=435 Identities=11% Similarity=-0.005 Sum_probs=205.3
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH-HHcCChHHHHHHHH
Q 004812 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY-CSLGQYNEAIPVLE 289 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~ 289 (729)
.+....++.....+..+-..++..|+ +++-...-.++.+++ ... |.++.-|.. ..++ ...++-.++...|+
T Consensus 103 ~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~----pl~--~~lWl~Wl~-d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 103 EEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIA----PLP--PHLWLEWLK-DELSMTQSEERKEVEELFE 174 (881)
T ss_pred HHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc----CCC--hHHHHHHHH-HHHhhccCcchhHHHHHHH
Confidence 33444555556666777778888886 655444433333332 222 333333322 2222 23477888999999
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004812 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 369 (729)
+++.-... .......+......+..+...++++.-...|.+++......... .......+..+-..|...-..++-
T Consensus 175 kal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 175 KALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99865311 00001111112233334455677888888999998775433221 234555666666666666666777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--H-HHHHhCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHc
Q 004812 370 QKFCQMALDIHKDNGSPASLEEAADRRLMG--L-ICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSL 445 (729)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg--~-~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~ 445 (729)
+.++...+...-.. ......|.... . ......+++.|+..+.+.+..+... ...+.....|..+-......
T Consensus 251 ~a~~~~el~~~~D~-----~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~ 325 (881)
T KOG0128|consen 251 IALFVRELKQPLDE-----DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS 325 (881)
T ss_pred HHHHHHHHhccchh-----hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 77777776654111 00111122221 1 1122334455544443333222111 11222233344444445555
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004812 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (729)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (729)
|+.-.-...+++++.- .+.....|...+...- .++-.+.+...+-+++.. .+.... +...+
T Consensus 326 G~p~ri~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~---------cp~tgd-L~~ra 387 (881)
T KOG0128|consen 326 GDPVRIQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS---------CPWTGD-LWKRA 387 (881)
T ss_pred CCchHHHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcC---------CchHHH-HHHHH
Confidence 6655555555555443 1222233333332221 112222222222223222 111111 11111
Q ss_pred HHHHhcch--HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004812 525 SIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY-------MLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 525 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
.+.+..++ ...-...+.+++...- . +++....|+ ...+++.-.+.|+.|...+.......
T Consensus 388 llAleR~re~~~vI~~~l~~~ls~~~----------~-l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~ 456 (881)
T KOG0128|consen 388 LLALERNREEITVIVQNLEKDLSMTV----------E-LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQ 456 (881)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHH----------H-HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 11111111 1111122222222100 0 111111111 12234445556666666655544432
Q ss_pred ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004812 596 SAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
.......+...|.++.. +++.+.|+.++...+.. ........|+....+-...|+...|..++++|+..
T Consensus 457 ~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~--- 526 (881)
T KOG0128|consen 457 LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ--- 526 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc---
Confidence 22244556666666554 46777887777766554 12333336777777777889999999988888754
Q ss_pred HcCCCChh-HHHHHHHHHHHHHHhCCHhHHH
Q 004812 675 KLGTANPD-VDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 675 ~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~ 704 (729)
...|+ ...++..+-.+....|.++...
T Consensus 527 ---~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 527 ---VVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred ---CcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 33443 4556666666677777777666
No 303
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.50 E-value=0.019 Score=58.87 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004812 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 641 (729)
-.-+.-.+..++|+.|+..|.+|+++ .+..+..+.+.+.++.+.+++..|+.-+.+|++. +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34567778889999999999999997 2335567777889999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
..+|+..|.+....+++.+|...|+....+ .|+...+...+..+-
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN 116 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence 999999999999999999999999998876 366666666655553
No 304
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=3.4 Score=42.18 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=138.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
-.......+..+.++....++..|...+.+.+-...+ +........++..++.++.+-+..-.+..+.-.++.....
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 4455677778999999999999999999998776655 4456667788888899888888877888777777776665
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-----FGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
. ..+...+..-..++..+...|..+.|+..+..++...-..+.-.... .+.++..-+..+ ...+.+.+.++++
T Consensus 346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 4 33444455556789999999999999999999988765443322110 011111111222 4456788888999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHH
Q 004812 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD---DAIEILEFVVG 670 (729)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 670 (729)
+|-.++.+..- +....++.+.+|..|...|+.+ ++...|+++..
T Consensus 424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99888887655 6678889999999999999865 44445555543
No 305
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=3.5 Score=42.31 Aligned_cols=443 Identities=10% Similarity=-0.027 Sum_probs=216.3
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
.+...++|.....|+.+...+-.++. +++-.+.|++...-+ |-...++.++.-|. ....+|.....+|.+
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~pf-------p~~~~aw~ly~s~E--LA~~df~svE~lf~r 101 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSPF-------PIMEHAWRLYMSGE--LARKDFRSVESLFGR 101 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCCC-------ccccHHHHHHhcch--hhhhhHHHHHHHHHH
Confidence 44567899999999999998888886 888777777765432 22222333333333 334778888888888
Q ss_pred hcccchhhccccchHHHHHHHHHHHHHHHHcCC-H--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH------
Q 004812 291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-L--ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV------ 361 (729)
Q Consensus 291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------ 361 (729)
++.-.- .+..|... .-|.+.-+ . -++....-+|.+......+- +|.....|...+..+.
T Consensus 102 CL~k~l----------~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~-e~~s~~~W~ey~~fle~~~~~~ 169 (660)
T COG5107 102 CLKKSL----------NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIF-EPQSENYWDEYGLFLEYIEELG 169 (660)
T ss_pred HHhhhc----------cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhcccc-cccccchHHHHHHHHHhccccc
Confidence 876421 11112211 11222111 0 03333333333332221111 3444444444444332
Q ss_pred ---HhcCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhCCC-ChhH
Q 004812 362 ---QALQFSEAQKFCQMALDIHKDNGSP--ASLEEAADRRLMGLICETKG----DHEAALEHLVLASMTMIANDQ-DAEV 431 (729)
Q Consensus 362 ---~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~a~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~-~~~~ 431 (729)
.+.+.+.-...|.+++..--.+... .+......-.+....-.-.| -|-.|...|++...+...... ++..
T Consensus 170 kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~ 249 (660)
T COG5107 170 KWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPIN 249 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchh
Confidence 3344555666666666432111100 00000000000011111111 244555555554433221110 1111
Q ss_pred HHH-----------HHHHHHHHH-----HcCCH-HHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004812 432 ASV-----------DCSIGDTYL-----SLSRY-DEAG-FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 432 ~~~-----------~~~la~~~~-----~~g~~-~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
... |.++-..-. ..|+. .+-+ -.+++++.. -+....+|+.....+...++-+.|
T Consensus 250 ~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--------~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 250 LRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--------FYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred hhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHhhccHHHHH
Confidence 111 111111111 11121 2211 234555554 466677888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC------------CCCC------
Q 004812 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP------------GQQS------ 555 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~------ 555 (729)
+...++++... |. ....++.+|...++-+.-..+|+++.+...... +...
T Consensus 322 l~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 322 LKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred HHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHH
Confidence 88887776652 11 344566666666665555555655544332110 0110
Q ss_pred -----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 556 -----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 556 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
.+..+++.+-..-.+..-.+.|...|-++-+. +-..+. ..++..+ .-+...|++.-|...|+-.+..
T Consensus 390 ~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----~~~~h~--vyi~~A~-~E~~~~~d~~ta~~ifelGl~~- 461 (660)
T COG5107 390 LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE----GIVGHH--VYIYCAF-IEYYATGDRATAYNIFELGLLK- 461 (660)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc----CCCCcc--eeeeHHH-HHHHhcCCcchHHHHHHHHHHh-
Confidence 01111222222223333455556666554432 211111 1111111 2345678999999999998887
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
.|+........-..+...++-+.|..+|+.++...++ ......|..+...-..-|+...+. ..=+.
T Consensus 462 -------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~iy~kmi~YEs~~G~lN~v~-sLe~r 527 (660)
T COG5107 462 -------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRIYDKMIEYESMVGSLNNVY-SLEER 527 (660)
T ss_pred -------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHhhcchHHHH-hHHHH
Confidence 5666554455556677889999999999988865432 123344555555555667766665 55455
Q ss_pred HHhhccc
Q 004812 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
...+.|+
T Consensus 528 f~e~~pQ 534 (660)
T COG5107 528 FRELVPQ 534 (660)
T ss_pred HHHHcCc
Confidence 5555554
No 306
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.49 E-value=2.6 Score=40.66 Aligned_cols=185 Identities=17% Similarity=0.159 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCCC
Q 004812 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQS 555 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (729)
+..+|.+..+.|+|++.+.++++++...... ...-.+.+..+|-. .|....+...+.......... +...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL--------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~ 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL--------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence 5678999999999999999999999882221 12223334444422 344445555554444433322 1111
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE---RKSAFFGVALNQMGLACVQR-----Y-----SINEAVEL 622 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 622 (729)
.. .+..-|.. .=-++=......++.+.....- .........+-..|..|.-. | -.+.|...
T Consensus 75 ~~-----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 75 QV-----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 11 11111110 0112223344455555443211 11111222333345444321 1 24789999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHc
Q 004812 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
|++|+++......+.+|-......+.+.+|. -+|+.++|+.+.++++.-....+
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence 9999999999888889999988888888774 58999999999999987765443
No 307
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=3.3 Score=41.88 Aligned_cols=141 Identities=18% Similarity=0.096 Sum_probs=102.3
Q ss_pred HHhcCHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004812 361 VQALQFSEAQKFCQMALDIHKD-NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (729)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (729)
+.+.++.+|..+-...+..... +...-+...+.+|+.+..+|...|+...-...+...+.......+....+...+.+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 3457788888777665543211 111122345678899999999999988877777766666666666777788888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
+.|...+.|+.|.....++.-- .. ..+...+..++.+|.+..-+++|..|.+++.+|+....
T Consensus 217 r~yL~n~lydqa~~lvsK~~~p-e~---~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYP-EA---ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCc-cc---cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 9999999999998876655311 00 01346678888999999999999999999999998854
No 308
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.41 E-value=0.0056 Score=59.59 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=84.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004812 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 687 (729)
.-.+..|.+++|++.|..++++ +|.....+...+.++..+++...|+.-+..++.+ +|+...-+
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGY 185 (377)
T ss_pred HHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccccccc
Confidence 3345578899999999999999 9999999999999999999999999999999987 78888888
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
-.-+.....+|++++|. +.|+.+.+++-+
T Consensus 186 kfrg~A~rllg~~e~aa-~dl~~a~kld~d 214 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAA-HDLALACKLDYD 214 (377)
T ss_pred chhhHHHHHhhchHHHH-HHHHHHHhcccc
Confidence 88899999999999999 999999988765
No 309
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=4 Score=41.71 Aligned_cols=199 Identities=12% Similarity=-0.017 Sum_probs=139.7
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
+-.......+..+.++....++..|..++.+..-.+... ........++..++.++.+-+..-.+..+.-.++....+.
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey 346 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY 346 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence 344456778889999999999999999999887655433 2333556677788888888888778877777777665554
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHcCChHHHHHHH
Q 004812 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY------DAIGRLDDAIEIL 665 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~ 665 (729)
..+ ...+..-..++..+..+|..+.|+..+..++....-.++-+ +...+++-.++|+ ....+.+.+..++
T Consensus 347 ~ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L 422 (482)
T KOG4322|consen 347 SLD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYL 422 (482)
T ss_pred ccc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHH
Confidence 332 22345566788888899999999999999998766554422 1222222222222 2455778888888
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHH--HHHHHHHhhccc
Q 004812 666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA--QSLETLLDANSR 717 (729)
Q Consensus 666 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~--~~l~~al~~~p~ 717 (729)
+++-.++.++ ..|....++.+-+|..|...|+..+--. ..|++++.--|.
T Consensus 423 ~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~ 474 (482)
T KOG4322|consen 423 DLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL 474 (482)
T ss_pred HHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC
Confidence 8888887765 5577788999999999999999875330 466666655543
No 310
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=4.8 Score=42.56 Aligned_cols=250 Identities=13% Similarity=-0.053 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
|..+......+.++...|+.+.|+..+..++.... ..-....++.+|.++..+.+|..|-..+.......
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des---- 333 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES---- 333 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh----
Confidence 33445556778888888998888998888887321 23345678889999999999999999988877762
Q ss_pred CCCChHHHHHHHHHHH-HHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 509 PGVPPEEIASGLTDVS-SIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
...-..|..++ .++.. .|+-+.|..+++....+....+...+.- .....-+.-+...+. -.+..
T Consensus 334 -----dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E-~f~~RKverf~~~~~-~~~~~ 406 (546)
T KOG3783|consen 334 -----DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE-KFIVRKVERFVKRGP-LNASI 406 (546)
T ss_pred -----hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh-HHHHHHHHHHhcccc-ccccc
Confidence 11122233333 33322 3455666666666555555432111111 111111111111111 00000
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004812 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
....+..-.+|..-|. ......+.. ++....+.-.-.+..+..--++.+|.++..+|+..
T Consensus 407 -------------~la~P~~El~Y~Wngf---~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~ 466 (546)
T KOG3783|consen 407 -------------LLASPYYELAYFWNGF---SRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSE 466 (546)
T ss_pred -------------cccchHHHHHHHHhhc---ccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHH
Confidence 0000111111111111 111222222 21111111111122333446678899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHhhccc
Q 004812 660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR-VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 660 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-~~~A~~~~l~~al~~~p~ 717 (729)
.|..+|..+++- +.....++--.+.+++.||.+|...|. ..++. +++.+|-+...+
T Consensus 467 ~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~-~~L~kAr~~~~d 523 (546)
T KOG3783|consen 467 VAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEAR-ALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHH-HHHHHHHhhccc
Confidence 999999998865 222334444557899999999999999 99999 999999877654
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.26 E-value=0.91 Score=46.84 Aligned_cols=162 Identities=15% Similarity=0.006 Sum_probs=116.9
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----c-----C---C--------CCCHhHHHHHH
Q 004812 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIG----A-----N---G--------KPSLELVMCLH 269 (729)
Q Consensus 210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~----~-----~---~--------~~~~~~~~~~~ 269 (729)
+......+|-....+++++.++..+|+ +..|.++.++|+-.++.. . . + ..+.....+++
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 344557889999999999999999997 999999999999887743 1 0 0 11244566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhcccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (729)
.....+.+.|-+..|.++.+-.+.++ +. +|.. +++.+-....+.++|+--+..++.......+. .-..
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~ 176 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL 176 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence 88888999999999999999999986 33 4432 35555556667788877777777655421100 0001
Q ss_pred HHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHhc
Q 004812 349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN 383 (729)
Q Consensus 349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 383 (729)
.....+.++.+++..++- +.|...+.+|+...|..
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 224556777788888887 89999999999988754
No 312
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.10 E-value=3.6 Score=40.10 Aligned_cols=93 Identities=13% Similarity=-0.053 Sum_probs=75.2
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004812 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
..-...+.++.+|+..+..... ......+...+|..|+..|++++|+.+|+.+...+...+-......++..+..|+.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3445678888888888876654 23345567789999999999999999999998888887777778888899999999
Q ss_pred HcCCHHHHHHHHHHH
Q 004812 444 SLSRYDEAGFAYQKA 458 (729)
Q Consensus 444 ~~g~~~~A~~~~~~a 458 (729)
..|+.+..+.+.-+.
T Consensus 230 ~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 RLGDVEDYLTTSLEL 244 (247)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999998887765544
No 313
>PRK14707 hypothetical protein; Provisional
Probab=95.04 E-value=5.9 Score=48.74 Aligned_cols=367 Identities=9% Similarity=0.001 Sum_probs=187.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (729)
-..+++++..+.+|.++..+-..+..+...+..+ +..... -..++.++--+++|.+...+-.-++.+.........
T Consensus 834 AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~ 911 (2710)
T PRK14707 834 VQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPE 911 (2710)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHH
Confidence 3467888888888887777777666665544222 222222 234566666777777766666666666555443322
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (729)
...+..-..++.++..+.++.++-.+-.-+..+......++.....+ ..++.++-.+++|.+.-.+-.-+..+...+.
T Consensus 912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~ 991 (2710)
T PRK14707 912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV 991 (2710)
T ss_pred HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh
Confidence 22233344566666666666554443333334444444444333222 3466777777888776666655555554442
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
.+..-.....-..+++++..+.+|.++-.+-.-+..+...+. . .+.. ..--..++.++....+|.+.-.+-.-+.
T Consensus 992 ~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~ 1068 (2710)
T PRK14707 992 DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-N--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAAS 1068 (2710)
T ss_pred ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-c--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHH
Confidence 111111222334567777777777666555555555554431 1 1111 1122345556666666554433333333
Q ss_pred HHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 545 KIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (729)
Q Consensus 545 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 623 (729)
.+......... ..+..-..++.++...-+|.+.-.+-.-++.+...++.........-...++.+.-...+|...-.+=
T Consensus 1069 aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr 1148 (2710)
T PRK14707 1069 ALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACE 1148 (2710)
T ss_pred HHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHH
Confidence 33332211111 00111234666777777777777777777777777655543333333334444444444443322222
Q ss_pred HHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 004812 624 EEARSILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD 684 (729)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~ 684 (729)
.-+..+..++.. +++... .-..++..+....+|-+.-.+-+-++.+....-...+|...
T Consensus 1149 ~Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~ 1209 (2710)
T PRK14707 1149 SAIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQ 1209 (2710)
T ss_pred HHHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchh
Confidence 222333333222 222211 22355666666666666666666666666555555555443
No 314
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.04 E-value=2.9 Score=42.55 Aligned_cols=148 Identities=8% Similarity=-0.002 Sum_probs=100.0
Q ss_pred CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004812 426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (729)
..+|....+|..+....-..-. .+.-+.+|++|++. +|.....+..+-.+..+..+.++.
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3466666666666655443322 34456677777776 566667777777777788888888
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-----------CcHHHHHH
Q 004812 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA 562 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~ 562 (729)
..-+++++... ...+.+...|...-......-.+......|.+++.......... ..+..++.
T Consensus 85 ~~~we~~l~~~------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLFKN------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHHHC------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 88888888872 22334444444443333444568889999999988877543321 24556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 563 QMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
.+.......|..+.|+..++-.+++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8888889999999999999988886
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.01 E-value=0.034 Score=34.34 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
++++.+|.++...|++++|+..|+++++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46889999999999999999999999988764
No 316
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.98 E-value=6.4 Score=42.36 Aligned_cols=116 Identities=8% Similarity=0.012 Sum_probs=63.3
Q ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 439 GDTYLSLSRYDEAGFAY------QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
|.++...|+.++|+... +-++++.+++ +......+..++..+.....+.-|-+.|.+.-..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 44555666666666542 3334443333 2333344555555566666666665555543221
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
-.+..++...+++++|..+.++--+.. ..+|+-.|..+....+|++|.+.|.+|-
T Consensus 777 --------ksiVqlHve~~~W~eAFalAe~hPe~~----------~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 777 --------KSLVQLHVETQRWDEAFALAEKHPEFK----------DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred --------HHHhhheeecccchHhHhhhhhCcccc----------ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 223456667778887766655432222 2345556777777777777777776553
No 317
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.92 E-value=4 Score=39.76 Aligned_cols=187 Identities=14% Similarity=0.022 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC----C-----C-HHHHHHHHHHHHHHHHhC--------------C
Q 004812 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP----A-----S-LEEAADRRLMGLICETKG--------------D 407 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~-----~-~~~a~~~~~lg~~~~~~g--------------~ 407 (729)
+.+.+..+++..|+...|+.-+++=+....+..+. . . ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 34556788888999999999988887777555433 1 1 223344445555554432 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCh----------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 408 HEAALEHLVLASMTMIANDQDA----------------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
|..|-.+...-...+......| .....+................++.+.+|+..+...
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 2333333222222222221000 000111111111112234456788888998888776
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
.. ......+...+|..|+..|++++|+.+|+.+...+++. .-..-...++..+..++...|+.+..+.+.-+.
T Consensus 172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 52 45556677899999999999999999999998887763 234455677888889999999988877665443
No 318
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=4.9 Score=40.75 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=98.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 401 ICETKGDHEAALEHLVLASMTMIANDQ---DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (729)
.++...++.+|...-...+.-....+. +...+.+|+.+..+|...|+...-...+...+... ..+.+....+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLi 212 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLI 212 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHH
Confidence 334456777777766555432221111 23456778888899999999777666665555443 2233455667777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+.|-+.|...+.|+.|.....+..-- . .......+..++.+|.+..-+++|..|.+++-+|+...|..
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~p--e---~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYP--E---AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCc--c---ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 88888999999999988776654311 1 11233678889999999999999999999999999988753
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.89 E-value=0.014 Score=56.89 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=81.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+.-.+..|.++.|++.|..++.+ +|..+..+...+.++..+++...|+..|..++.+ +++.+.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---------n~Dsa~ 183 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---------NPDSAK 183 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc---------Cccccc
Confidence 34455678899999999999998 8999999999999999999999999999999998 566677
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 519 GLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.|-..+.....+|++.+|..++..+.++.
T Consensus 184 ~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 184 GYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 78888889999999999999999988764
No 320
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.67 E-value=3.8 Score=43.48 Aligned_cols=178 Identities=11% Similarity=0.026 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHH
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-------EQAIKLLQKALKIY 547 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 547 (729)
.....||++++.+++|+-|...|+.+..-+.. .......+.+.-..|.++...+.. ++...+++.|+..+
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~---Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN---DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh---chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 45567899999999999999999999887754 222333444555555555555532 46778888888887
Q ss_pred HhC----CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCCCCChHHHHHHHHHHHHH--HHcCCHHHH
Q 004812 548 NDA----PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL--RAIGERKSAFFGVALNQMGLAC--VQRYSINEA 619 (729)
Q Consensus 548 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A 619 (729)
... .........+....+.++...|.+.+|...+-+..... ..+.. ...+..+..+|.+| ........-
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~---~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP---FGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh---HhhHHHHHHHHHhhcccccCCCCcc
Confidence 772 12222344566677888888999888877766665542 11110 11344455555555 111000000
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
..- ....+--+..-|.-|...|+...|+.+|.+++.++.
T Consensus 363 ~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000 011222233446778999999999999999998875
No 321
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=2.1 Score=41.08 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
.-++-++-+.+.++-....+.......++.++|..|.+.++.+.+.+++.+.+.-....+- ..+...+-..||.+|..
T Consensus 90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGD 167 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhcc
Confidence 3445555565555554444445677889999999999999999999999988876544431 33444555666766665
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+.-.++.++.....++. |.+....-..-...|.......++.+|-.++...+..+...
T Consensus 168 ~~vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 168 RKVVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 54444554444444443 55555444444556666777788889888888777665443
No 322
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.66 E-value=0.19 Score=37.91 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
+...+..|..+|...+ .++|+..+.+|++... ..++...++-.+..+|+..|+|.+.+.+..+-+++.
T Consensus 6 ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888998886 8999999999998652 236778888899999999999999999887766664
No 323
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.55 E-value=0.1 Score=33.37 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 478899999999999999999999999999887643
No 324
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.53 E-value=6 Score=41.98 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH-------EAALEHLVLASMTMI 423 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 423 (729)
.....||..++..++|+-|...|+.+.+-+.... .....+.++...|.+....+.. +....+++.|...+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 4567899999999999999999999888665433 2233455666666666666643 366667777766555
Q ss_pred hC-----CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHcCCHHHH
Q 004812 424 AN-----DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA---VASVFVRLADMY--NRTGKLRES 493 (729)
Q Consensus 424 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A 493 (729)
.. ........+....+.++...|.+.+|...+-+.....-. .... .+..+-.+|.+| ........-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 52 222344556667778888889988887776666554210 0122 445555556655 111000000
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+......+.-+..-|.-|...|+...|+.+|.+++.++...
T Consensus 363 ----------------~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 363 ----------------LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ----------------chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 00012234445556778899999999999999999998744
No 325
>PRK14707 hypothetical protein; Provisional
Probab=94.50 E-value=11 Score=46.64 Aligned_cols=384 Identities=10% Similarity=0.025 Sum_probs=191.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004812 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
.+++++..+.+|.+...+-..+..+...+.. ++..... -..++.++--..+|.+...+-.-+..+...........
T Consensus 752 evANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr 829 (2710)
T PRK14707 752 QVATALNALSKWPDNQACAAAANTLAERQLR--EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLR 829 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHH
Confidence 4556666666655444444444333333221 1222111 23445555555555555444444444443332221111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
.+..-..++.++..+.++..+..+-.-+..+.......+.....+ ..++.++-.+++|.+...+-.-++.+...+..+
T Consensus 830 ~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d 909 (2710)
T PRK14707 830 EAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADE 909 (2710)
T ss_pred HhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC
Confidence 222234566666666776655555554444444444444333222 345677777778877777666666666665422
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
..-.....-..++.++..+.+|.++-.+-.-+..+..... .+..-.....-..++.++-..++|-+.-.+-.-+..+..
T Consensus 910 ~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa-~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 910 PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS-DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc-cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 1222223345677777777777766555555544444431 111111122233456666666776665555554444444
Q ss_pred hCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 549 DAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 549 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
....... .....-..++.++....+|.++-.+-.-+..+...+.....-..+.--..++.++-...+|.+.-.+-.-+.
T Consensus 989 rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~ 1068 (2710)
T PRK14707 989 RLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAAS 1068 (2710)
T ss_pred HHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHH
Confidence 3311111 001112356777777778876666666666665555333211112223345555556666655444444444
Q ss_pred HHHHHhcCCCChhHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004812 628 SILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~ 701 (729)
.+...+.. ++.... .-..++.++...-+|.+.-.+-+.++.+...+....++........++.++....++.
T Consensus 1069 aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp 1142 (2710)
T PRK14707 1069 ALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWP 1142 (2710)
T ss_pred HHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCC
Confidence 44333322 222222 2245677777777777777777777777776655555544444445555555544443
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.45 E-value=0.21 Score=39.65 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+..+++.+.. +|+...+.+.+|..+...|++++|++.+-.++..-. ......+...|-.++...|.
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr------~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR------DYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T------TCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------cccccHHHHHHHHHHHHcCC
Confidence 4556677776 899999999999999999999999999888775311 11123444555555555665
Q ss_pred HhHHH
Q 004812 700 VRSRK 704 (729)
Q Consensus 700 ~~~A~ 704 (729)
-+.-.
T Consensus 74 ~~plv 78 (90)
T PF14561_consen 74 GDPLV 78 (90)
T ss_dssp T-HHH
T ss_pred CChHH
Confidence 44333
No 327
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.21 E-value=6.1 Score=38.77 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=116.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (729)
..++|++|++.+... +..+.+.|++.-|.+...-.++.+.+.. .+.......+++.+
T Consensus 2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 456777777766544 4556666777777766666666666543 22223334566666
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-----------HHHHHhCC
Q 004812 484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP 551 (729)
Q Consensus 484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~ 551 (729)
+...+.-+ +-..+..++++..+. +.........+..+|..+.+.|++.+|..+|-.+ +......
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~- 134 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK- 134 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence 66654333 456667778877622 3334455678899999999999999999887421 1111111
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----CC------CCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI----GE------RKSAFFGVALNQMGLACVQRYSINEAVE 621 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 621 (729)
+.+.............|...++...|...+..-.+.+... .. ...+....++. -..-++.++ ..
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l--Ll~t~e~~~----~~ 208 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL--LLLTCERDN----LP 208 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH--HHHHHHHT-----HH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH--HHHHHhcCc----HH
Confidence 3333333333445556778899999998888777653322 11 11122222222 122233333 34
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
.|....+.+...... +|.....+..+|..|....
T Consensus 209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCC
Confidence 555555554443322 5677778888888887654
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.19 E-value=4.4 Score=41.33 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004812 470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (729)
+|....+|..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 78888888888776655433 34556777788777 2222333444444445566677777
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------ChHHHHHHHHHH
Q 004812 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG 607 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la 607 (729)
..+++++...+..+ .+-..|...-......-.+......|.+++..+....... ......++..+.
T Consensus 86 ~~we~~l~~~~~~~----~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGSP----ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCCh----HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 77777777654431 1111122222222233468899999999998877654432 223445677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 004812 608 LACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~ 629 (729)
....+.|-.+.|+..++-.+++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHH
Confidence 8888999999999999999987
No 329
>PRK10941 hypothetical protein; Provisional
Probab=93.92 E-value=0.68 Score=45.32 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
.....+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 34567788889999999999999999999999 78888888999999999999999999999999876
Q ss_pred CCChhHHHHHHHHHH
Q 004812 678 TANPDVDDEKRRLAE 692 (729)
Q Consensus 678 ~~~p~~~~~~~~La~ 692 (729)
|++|........+..
T Consensus 246 P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 246 PEDPISEMIRAQIHS 260 (269)
T ss_pred CCchhHHHHHHHHHH
Confidence 566665555544443
No 330
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=7.2 Score=38.40 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004812 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (729)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~ 404 (729)
++-++-+.+.++-..+.+|+ ....+++...|..|++.|+-+.|++.+.+..+..-..+.. ++.......+|..|.
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~- 155 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYL- 155 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhc-
Confidence 44455566666666554443 4678899999999999999999999999988776655533 444445556666654
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
+.+-.-+..++|-.++...++....-..-...|.......+|.+|...|-.++..+.
T Consensus 156 --D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 156 --DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 455555556666666677776554444445556677777888888888888776653
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.84 E-value=0.15 Score=53.30 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
.|..+..+|+...|+.++..|+..... .....+.+||.+....|-.-.|-.++.+++.+ ......
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl 677 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPL 677 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCch
Confidence 344556789999999999999876432 12245778999999999999999999999998 444445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.++.+|++|..+.+.+.|++.|++|++.
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 7889999999999999999999999976
No 332
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.70 E-value=7 Score=37.66 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004812 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
+..+|.+....|+|++.+.++++++.. +......-...++.+|-. .|....+...+.......... ..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~----~~ 72 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK----GN 72 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc----ch
Confidence 456788888999999999999988877 122233333444444422 344444555554444332221 01
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC----CcHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ----STVAGIEAQMGVMYYML-----G-----NYSDSYD 579 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 579 (729)
+... .+..-| +..=-++=...+..++.+.....-+. ......+-..|..|.-. | -.+.|..
T Consensus 73 ~~~~----~~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 73 EKQV----KLIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 1111 111111 11111223344455555544432111 11122222344444321 1 2368999
Q ss_pred HHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 580 SFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 580 ~~~~al~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.|++|+.+... +.+.+|..++.+++.-...|...|+.++|+.+.++|+.....
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999988 455555545555554444445689999999999999887544
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.65 E-value=1.4 Score=38.93 Aligned_cols=86 Identities=19% Similarity=0.092 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
...+..+..+-...++.+++..++....-+ .|.....-..-|.++...|+|.+|+.+|+.+.. .
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~ 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence 345566666777788999998888877777 788888888999999999999999999998653 3
Q ss_pred ChhHHHHHHHHHHHHHHhCCHh
Q 004812 680 NPDVDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~ 701 (729)
.|....+.-.++.++..+|+..
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH
Confidence 5666777777888888887754
No 334
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=4.3 Score=39.88 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004812 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494 (729)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 494 (729)
+.+.++-...+........++.+.|..|++.|+-+.|++.+.+..+..-..+ ...+.......+|.+|... +--.
T Consensus 87 ld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~---~lV~ 161 (393)
T KOG0687|consen 87 LDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH---DLVT 161 (393)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH---HHHH
Confidence 3333333333333556778899999999999999999999988776544433 1334455556666666544 4444
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+..++|-.++++ |.+....-..-..-|.......+|.+|-.+|-.++..+...
T Consensus 162 ~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 162 ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 445555555555 55554444444455666677788889888888777665443
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.60 E-value=1.8 Score=32.80 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
...-|.-++...+.++|+..++++++... +.+....++-.+..+|...|+|.+++.+..+=+.+....
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556678889999999999999843 366788899999999999999999999988877776654
No 336
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=5.1 Score=35.60 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=98.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004812 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (729)
|.-|+..+.-..+-..|..++++. ..++.++|+..|....+ ...+..+ ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~lek---tg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLEK---TGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHHh---cCCCcch--HHH
Confidence 334556666666666666666663 33556667666654332 2233333 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
....+.+....|+...|+..|.++-.-. ..|.. ...+...-+.++...|-|+.-.. ..+.+.++.+|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~ 164 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence 5678899999999999999998765421 11111 12344455666777787766443 33444556678
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
-...+...||..-.+.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888899999999999999999999998875
No 337
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=8.1 Score=37.32 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
.-++-++-+.+.++-.....+ ....+.++.++|..|.+.++.+.+.+++.+.+......+...+...+...+|.+|..
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 344556666666655544432 345578899999999999999999999999887777777777777777788888866
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
+.-..+.++.....++. |.+....-..-...|.......+|.+|-.++-..+..+..
T Consensus 168 ~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 168 RKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 55555555544444433 2233333333344456666677888998888888877654
No 338
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.97 E-value=1.3 Score=36.09 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=58.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----CHH-------HHHHHHHHHHHHHHHhc
Q 004812 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----RYD-------EAGFAYQKALTAFKTNK 466 (729)
Q Consensus 398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~-------~A~~~~~~al~~~~~~~ 466 (729)
.+.-++..|++-+|++..+..+.... ........+..-|.++..+. +.+ .+++.|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~---~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG---EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc---CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence 35678899999999999998765432 33332345566676665433 333 344455555544
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.|..+..++.+|.-+...--|+++..-.++++.+
T Consensus 74 ---sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 ---SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6766777777776655555556666555555544
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.93 E-value=1.1 Score=36.54 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=63.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI----GRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
++.-++..|++-+|+++.+..+..... +......+..-|.++..+ .+.+-=..++.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 466788999999999999999887221 222224555566666443 3433333444444444333222 257
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
..+..++.||.-+...-.|+++. ..-+++|..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v-~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAV-KKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH-HHHHHHhcc
Confidence 77888888888777777777777 666666544
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.84 E-value=0.16 Score=30.61 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++..+|.++...|++++|. ..++.+++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence 46788999999999999999 999999998874
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.83 E-value=2.5 Score=41.34 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
...++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578889999999999999999999999999 99999999999999999999999999999999887777775
Q ss_pred CChhHH
Q 004812 679 ANPDVD 684 (729)
Q Consensus 679 ~~p~~~ 684 (729)
......
T Consensus 224 ~P~~~~ 229 (280)
T COG3629 224 DPAPEL 229 (280)
T ss_pred CccHHH
Confidence 544433
No 342
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.74 E-value=14 Score=38.27 Aligned_cols=232 Identities=11% Similarity=0.064 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
+..|+.....+...++-+.|+...++++...+ . ..+.++.+|....+-+....+|+++.+.....+..
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----s-------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~ 369 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSP-----S-------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSM 369 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----c-------hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhh
Confidence 45566666667778899999999999887751 1 36678888888888888888888887665432211
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 424 (729)
.+.+.. -...|+++...+++-+-... . ..++..+-..-.+..-.+.|...|.++.+.- .
T Consensus 370 ~~s~~~---------s~~D~N~e~~~Ell~kr~~k---~--------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-~ 428 (660)
T COG5107 370 GESESA---------SKVDNNFEYSKELLLKRINK---L--------TFVFCVHLNYVLRKRGLEAARKLFIKLRKEG-I 428 (660)
T ss_pred hhhhhh---------ccccCCccccHHHHHHHHhh---h--------hhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-C
Confidence 110000 00123342222222111110 0 1123333333344455667777776664321 1
Q ss_pred CCCChhHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 425 NDQDAEVASVDCSIG-DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 425 ~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+.+ +|..-| .-|...|++.-|...|+-.+.. .++........-..+...++-..|..+|++++..
T Consensus 429 ~~h~-----vyi~~A~~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 429 VGHH-----VYIYCAFIEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred CCcc-----eeeeHHHHHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 1111 121122 2345678999999999888876 4555555555566677889999999999988877
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.++. ..-.+|..+-..-..-|+...+..+-++.....++
T Consensus 496 ~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 496 LEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 5441 22344555555555566666666655555555443
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.74 E-value=3.5 Score=39.83 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 680 (729)
..+...+..|...|.+.+|+.+.++++++ +|-....+..|..++..+|+--.|+..|++..+..++-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 45566788899999999999999999999 9999999999999999999999999999999999888888665
Q ss_pred hhHHHHH
Q 004812 681 PDVDDEK 687 (729)
Q Consensus 681 p~~~~~~ 687 (729)
.+...-|
T Consensus 352 ddsieew 358 (361)
T COG3947 352 DDSIEEW 358 (361)
T ss_pred chhHHHH
Confidence 5554444
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.70 E-value=4.3 Score=37.36 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=59.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (729)
.++..-.-+.|+..|-++. .......+...+.+|..|. ..+.++|+..+.+++++... ++...+.++..|
T Consensus 115 y~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sL 184 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSL 184 (203)
T ss_pred HHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHH
Confidence 3444545566777665442 2223345677778887776 67899999999999998533 234567889999
Q ss_pred HHHHHHcCCHHHHH
Q 004812 481 ADMYNRTGKLRESK 494 (729)
Q Consensus 481 a~~~~~~g~~~~A~ 494 (729)
+.++...|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999998874
No 345
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.68 E-value=0.36 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.++..||.+-+..++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999777654
No 346
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.32 E-value=0.79 Score=31.98 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
.+++.+|..+.+.|+|++|..+.+.++++ .|++..+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHH
Confidence 36778999999999999999999999999 78776655433
No 347
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.26 E-value=1.9 Score=38.09 Aligned_cols=89 Identities=8% Similarity=-0.033 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.......+..+..+-...++.+++...+....-+ .|.....-..-|.++...|+|.+|+.+|+.+.+-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---- 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---- 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence 3444556666777777788888888777655554 6888888888899999999999999998886544
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
.+....+--.++.++..+|+.
T Consensus 74 -----~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 -----APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred -----CCCChHHHHHHHHHHHHcCCh
Confidence 233344445567777777764
No 348
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.95 E-value=0.24 Score=45.67 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=54.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
......|+.+.|.+.|.+++.+ -|+....|+++|....+.|+++.|. ..|++.++++|+
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcc
Confidence 3456778999999999999987 4999999999999999999999999 999999999997
No 349
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=91.93 E-value=12 Score=35.95 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004812 477 FVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
+..+|.+..+.++|++.+.+..++++... ..+ ...-.+.|..+|-. .|....+...+....+ -....+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~sie~-ke~~~~~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEESRGNE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhHHHH-hhhccCch
Confidence 34678888999999999999999887622 111 11223334444432 3555555555544222 11111111
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHHH-----cCC-----HHHHHH
Q 004812 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK---SAFFGVALNQMGLACVQ-----RYS-----INEAVE 621 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 621 (729)
... .+..-|. ..=-++-..+....+.+.....-+. +......+-..|..|.- .|+ .+.|..
T Consensus 76 ~~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 110 1111111 0011233445556666655432211 11122223333444432 222 568999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004812 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 673 (729)
.|+.|+++......+.||-......+.+.+|.. +++.++|..+.++++.-.-
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999998887888899988888887777654 6999999988888876543
No 350
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.64 E-value=1.1 Score=31.34 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 356 (729)
+++.+|..++++|+|++|..+.+.+|++ +|....+....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHH
Confidence 4788999999999999999999999999 67776654433
No 351
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.61 E-value=4 Score=41.42 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004812 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (729)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (729)
.++..+|..|...|+++.|+..|-++-..+.. .......+.++-.+-...|+|.....+..+|............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 46889999999999999999999998777644 3567788888888889999998888888777665211000000
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLA 418 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 418 (729)
...+.+...-|.+...+++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000123444555566666788887777544
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.41 E-value=2.1 Score=44.39 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
++..|.++++-+|+|..|++.++.. ++.....-...+...+.+++.+|.+|..+++|.+|+..|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999998753 333222222334456677999999999999999999999998876544
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.28 E-value=5.9 Score=36.44 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
.-++|...|-++- +...-+.+...+.||..|. ..+.++|+.++.+++++.. +++.-+++++..|+.++
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence 3456665555432 2223456678888888777 5688999999999998752 33355678899999999
Q ss_pred HHhCCHhHHH
Q 004812 695 KEAGRVRSRK 704 (729)
Q Consensus 695 ~~~g~~~~A~ 704 (729)
..+|+++.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999986
No 354
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.24 E-value=16 Score=35.87 Aligned_cols=205 Identities=15% Similarity=0.152 Sum_probs=105.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
+..+.+.|++.-|..+..-.++.+.+.....+ .....+++.+......-+ +-..+..++++.. ...+.......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~----~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~ 91 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVD----EESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---S----HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHH
Confidence 44445555555555555555555544321111 122344555555443322 3456667777777 44344556678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNA-----------ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
.+..+|..|.+.|++.+|..+|-.. +..+...+.... ...........|+..++...|...+...++
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e--~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE--ADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8889999999999999999887421 111122222221 233334444567778999999998888877
Q ss_pred HHHHhc----------CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004812 629 ILEQEC----------GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 629 ~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 698 (729)
.+.... ....|. ......|-.+ .+.+ +...|....+.++..+. .+|.....+..+|.+|+...
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 170 KLIESHPKLENSDIEYPPSYPL-LNFLQLLLLT-CERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHH---EEEEEEEEESS-HH-HHHHHHHHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred HHhccCcchhccccCCCCCCch-HHHHHHHHHH-HhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence 644320 111222 1122222222 2223 34566666666655442 25778888889999998754
Q ss_pred C
Q 004812 699 R 699 (729)
Q Consensus 699 ~ 699 (729)
.
T Consensus 243 ~ 243 (260)
T PF04190_consen 243 P 243 (260)
T ss_dssp S
T ss_pred C
Confidence 3
No 355
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.92 E-value=16 Score=35.25 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 353 CRYLAEAHVQALQFSEAQKFCQMALDIH-KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
+..+|.+..+.++|++.+.+.+++++.. +.... ..-.+.+..+|- ..|....+...+..........+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 4567888888999999999999988752 21211 122455555553 346666666665532111111111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHc-----CC-----HHHHHHHH
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH---PAVASVFVRLADMYNRT-----GK-----LRESKSYC 497 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~ 497 (729)
. .+..-|. ..=-++-..++..++.+.....-+.. ......+-..|..|... |+ .+.|...|
T Consensus 78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1 1111111 11123445566777777665543321 22233333445555432 22 45889999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHH
Q 004812 498 ENALRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 547 (729)
+.|+++....++.. +|.......+.+.. |.-+++.++|..+.++++.-.
T Consensus 152 ~~A~e~a~~~L~pt-~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 152 KSAQDIALAELPPT-HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999987755444 44444444455544 445799999988877777654
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.86 E-value=4.9 Score=40.89 Aligned_cols=106 Identities=7% Similarity=-0.029 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC---ch-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD---PR-------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
.-|..++++++|..|..-|..+|+++.+...-.. +. ...+...|..||...++.+.|+.+..+.+.+.|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456677788888888888888888766432221 11 1224567889999999999999999999988876
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
... -+...+.++..+.+|.+|-..+.-+..++...+
T Consensus 261 ~fr--------nHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 261 YFR--------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred hhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 653 266778888899999999887766655554444
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.71 E-value=33 Score=38.58 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
......+....|.-....|++++|+.+|.-|
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445556667777777788888887776543
No 358
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.66 E-value=12 Score=33.41 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNL 648 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l 648 (729)
.+..++|+..|...-+ .+-. .+...+....|.+....|+...|+.+|.++-... ..|... .+...-
T Consensus 71 ~~k~d~Alaaf~~lek----tg~g--~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEK----TGYG--SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHh----cCCC--cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHH
Confidence 4556677766655432 2211 2234577888999999999999999999876541 123322 244555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+.++...|-|++-.. ..+.+.++.+|....+...||..-.+.|++.+|. ..|.++..
T Consensus 139 a~lLvD~gsy~dV~s-------rvepLa~d~n~mR~sArEALglAa~kagd~a~A~-~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSS-------RVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK-SWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHH-------HhhhccCCCChhHHHHHHHHhHHHHhccchHHHH-HHHHHHHc
Confidence 666777787765443 3444556888999999999999999999999999 99988765
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.66 E-value=4.6 Score=32.04 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
+..+++.+.. +|....+.+.+|..+...|++++|++.+-.++...+...+
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 3455666666 7899999999999999999999999999999888766543
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.65 E-value=0.34 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.++..+|.++...++++.|+..+++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678899999999999999999999987654
No 361
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.51 E-value=19 Score=35.48 Aligned_cols=111 Identities=10% Similarity=-0.002 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004812 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
....+...||.+|...++|..|-..+.- +.........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 4566788999999999999998877643 222211111122334567888999999999999999999988655554444
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (729)
.......-...|+++-..++|-+|...|-+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43344444455677777777777766665443
No 362
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=90.28 E-value=11 Score=33.97 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHH
Q 004812 349 VGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 349 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~ 422 (729)
.++.+..|+..+. .+.+|++|...| ..+-+.... +...+.+|..++ ..+++..|++.+..+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~-------K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-- 101 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVF-------KKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-- 101 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-------HhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence 3455666665443 233455555544 443332221 344566665554 34578899999987753
Q ss_pred HhCCCChhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----------
Q 004812 423 IANDQDAEVASVDCSIGDTYLSL-----S--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN---------- 485 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------- 485 (729)
.....+...+|.++..- + +..+|++++.++-++ ....+.+.|...|.
T Consensus 102 ------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~a 165 (248)
T KOG4014|consen 102 ------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNA 165 (248)
T ss_pred ------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccC
Confidence 33345566677666542 2 367888888887765 11223333333333
Q ss_pred --------------HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHH
Q 004812 486 --------------RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIY 547 (729)
Q Consensus 486 --------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 547 (729)
...+.+.|..+..+|-++ ....+..++.+.|.. -.+.++|..+-.+|.++.
T Consensus 166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 166 PGEGKPLDRAELGSLSKDMDKALQFAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 334556666666555554 224456666666653 236778888888888877
Q ss_pred HhC
Q 004812 548 NDA 550 (729)
Q Consensus 548 ~~~ 550 (729)
...
T Consensus 235 ~e~ 237 (248)
T KOG4014|consen 235 EEL 237 (248)
T ss_pred HHH
Confidence 654
No 363
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=29 Score=37.28 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=107.7
Q ss_pred cCChHHHHHHHHHhcccchhh----ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--------
Q 004812 278 LGQYNEAIPVLEQSIEIPVIE----EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-------- 345 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 345 (729)
...|++|...|.-+....... .-..+ +.-+..+..++.++..+|+.+-|....+++|-.....+...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ss-PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISS-PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccC-CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 456788888888777654210 00112 23456689999999999999999999999998776654221
Q ss_pred -----Cch---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004812 346 -----DPR---VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 346 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
.|. ...+++..-..+.+.|-+..|.++++-.+.+.+..... .+++.+-....+..+|.=-++.++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl------~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL------GILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch------hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 122 22333444455667899999999999999988764321 2344444444555666666665554
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004812 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTA 461 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 461 (729)
.. ........|..... ..+|..|..... -..|...+.+|+.+
T Consensus 404 ~e-~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 404 PE-NMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HH-hhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 31 11222223333222 345566666555 56788888888887
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.98 E-value=4.1 Score=41.41 Aligned_cols=101 Identities=9% Similarity=0.051 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
-|..++++++|..|..-|..+++++.+..-... .....+-..|..||+.+++.+.|+....+.+.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 356677888898898889988888765321111 112335567889999999999999999999988
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|....-+...|.|+..+.+|.+|..-+--+.=++
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988889999999999999999988777665444
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.96 E-value=9.9 Score=40.49 Aligned_cols=128 Identities=20% Similarity=0.143 Sum_probs=71.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004812 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV-GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (729)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (729)
.....++++++....... ++. |.. ..-...++..+.++|..+.|+.+.+.-- ..
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll--------~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------------~r 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLL--------PNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------------HR 324 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTG--------GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------------HH
T ss_pred HHHHcCChhhhhhhhhhh-hhc--------ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------------HH
Confidence 344578888877666311 111 111 2235667777888888888877653321 12
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (729)
Q Consensus 396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (729)
+ .+....|+++.|.+...+ ......|..||.....+|+++-|..+|+++-+.
T Consensus 325 F---eLAl~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-------------- 376 (443)
T PF04053_consen 325 F---ELALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF-------------- 376 (443)
T ss_dssp H---HHHHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------
T ss_pred h---HHHHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------
Confidence 2 334577888888876532 123357888999999999999999988876443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 476 VFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
..|..+|...|+.+.=.++...
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHHH
T ss_pred --cccHHHHHHhCCHHHHHHHHHH
Confidence 3455667777776544443333
No 366
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.74 E-value=13 Score=38.09 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc----CCCCCHhHHHHHHHHHHHHHHcCC---hHHHHHHHHHhccc
Q 004812 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGA----NGKPSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEI 294 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 294 (729)
..+...|+.++.... |.+|+.++..|-+.|-.+. +.-+ +.+..-..+-+||+.+.+ ...|..-+..+-+-
T Consensus 164 lg~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~VD--NyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 164 LGLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELVD--NYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhhc--chhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 345778888998885 9999999988888775542 1111 223334456778887765 34555544444433
Q ss_pred chhhccc-----------cchH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 295 PVIEEGQ-----------EHAL--AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (729)
Q Consensus 295 ~~~~~~~-----------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (729)
+...+|. ..|. ..+..+..-|.+.+++|+-++|.++++.+......
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3322222 2221 22344556677778888888888888877766544
No 367
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.63 E-value=5.2 Score=34.75 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
+..+..+-...++++++..++....-+ .|....+-..-|.++...|+|.+|+..|+...+- .+.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~~ 76 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AGA 76 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CCC
Confidence 344444455588899988888777666 7888888888999999999999999999987642 334
Q ss_pred HHHHHHHHHHHHHHhCCHh
Q 004812 683 VDDEKRRLAELLKEAGRVR 701 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~ 701 (729)
.....-.++.++..+|+..
T Consensus 77 ~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 77 PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred chHHHHHHHHHHHhcCChH
Confidence 4555566777777777654
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.37 E-value=6.6 Score=41.81 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=87.0
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004812 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (729)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (729)
...++++++..+... -++.+... ......++..+..+|-++.|+..... + ...+ .
T Consensus 272 v~~~d~~~v~~~i~~-~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~D-----------~---~~rF---e 326 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA-SNLLPNIP-------KDQGQSIARFLEKKGYPELALQFVTD-----------P---DHRF---E 326 (443)
T ss_dssp HHTT-HHH-----HH-HHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HHHH---H
T ss_pred HHcCChhhhhhhhhh-hhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcCC-----------h---HHHh---H
Confidence 346788887666531 12222221 12366788888999999999887532 2 1222 3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004812 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
+..+.|+++.|.+..++ ......|..||......|+++-|..+|+++-..
T Consensus 327 LAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------- 376 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------- 376 (443)
T ss_dssp HHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------------
T ss_pred HHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------------
Confidence 45678998888765432 224468999999999999999999999886433
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
..|..+|...|+.+.=.++. .+.... +. ++..-.+++..|+.++.+..+.++
T Consensus 377 ~~L~lLy~~~g~~~~L~kl~----~~a~~~-~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 SGLLLLYSSTGDREKLSKLA----KIAEER-GD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHH----HHHHHT-T--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cccHHHHHHhCCHHHHHHHH----HHHHHc-cC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556777777764433333 333222 11 122234455667777766666544
No 369
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.32 E-value=51 Score=38.70 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=74.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004812 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (729)
...++.....|+.|+..|++...-.+ |... -.++.+++|.+...+-.-..--..|.+|+..+..+.+ .+..+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 45667777889999999998876642 2222 2345777887776543222222556666666655433 24555
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
--|...|.+|...|+|++-+++|.-|++.++.....
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 567888899999999999999999999999877643
No 370
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.19 E-value=3.2 Score=31.37 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
.+..+...|..+-..|+ +.+|+.+|++|++++.+.....|+......+...
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 46677888988999997 9999999999999998887766664444434333
No 371
>PRK10941 hypothetical protein; Provisional
Probab=89.01 E-value=2.3 Score=41.69 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+.+|-.+|.+.++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|. ..|+..++..|+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~ 247 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCC
Confidence 36678888999999999999999999987 5777777888999999999999999 999999999998
No 372
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.80 E-value=2.6 Score=44.13 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=78.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc---CChHHHHHHHHHhc
Q 004812 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---GQYNEAIPVLEQSI 292 (729)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al 292 (729)
.-|+.....+..|+-.+..+. ...|+..|.+++... |....+|.+.+.++++. |+.-.|+.....|+
T Consensus 369 eL~e~ie~~~~egnd~ly~~~-~~~~i~~~s~a~q~~---------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al 438 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESI-VSGAISHYSRAIQYV---------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL 438 (758)
T ss_pred hchHHHHHHHhhccchhhhHH-HHHHHHHHHHHhhhc---------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence 346667777777777777776 888999999988765 44577788888888765 45566777777888
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
++. .....+++.|+.++..++++.+|+.+...+...
T Consensus 439 rln---------~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 439 RLN---------PSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred cCC---------hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 775 345667999999999999999999987765544
No 373
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.77 E-value=1.1 Score=43.31 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004812 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 685 (729)
.|.-....|+.++|..+|+.|+.+ .|...+++..+|.+.....+.-+|-.+|-+|+.+ .|.+..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence 344456789999999999999999 8888899999999999999999999999999976 455555
Q ss_pred HHHHHH
Q 004812 686 EKRRLA 691 (729)
Q Consensus 686 ~~~~La 691 (729)
++.+.+
T Consensus 186 ALvnR~ 191 (472)
T KOG3824|consen 186 ALVNRA 191 (472)
T ss_pred HHhhhh
Confidence 554433
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=88.53 E-value=9.4 Score=32.59 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004812 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
+.-..-..++++++..+.....-.+++....+|...+.... .+.+.|...... +.....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 45566678899999988664323445556666665555332 667777655443 3334457788899999
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004812 568 YYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al 585 (729)
+...|++++|...|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998764
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.46 E-value=0.67 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 004812 267 CLHVIAAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~ 290 (729)
++..+|.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998863
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.05 E-value=0.65 Score=26.82 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367889999999999999999876
No 377
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.05 E-value=34 Score=35.08 Aligned_cols=119 Identities=17% Similarity=0.095 Sum_probs=79.7
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
+..+.+......-.++..+|..|...|+++.|++.|-++...+.. .......+.++-.+-...|+|..-..+..+
T Consensus 138 k~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 138 KSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 333333334455678889999999999999999999998887654 356677888888888899999988888887
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
|....... ..........+...-|.+...+++|..|..+|-.+.
T Consensus 213 A~st~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 213 AESTPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHhCchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77652000 000000112233344555556668888888876543
No 378
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.92 E-value=77 Score=39.00 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----C--------------------
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----R-------------------- 447 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~-------------------- 447 (729)
+.....+|.++...|.+.+|+.+|..|+...+..++....+.++-.++.+....+ +
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 4557789999999999999999999999999999998888888776665443211 0
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHhcC---CCCh--hHHHHHHHHHHHHHHcC--
Q 004812 448 --------------------------------YDEAGFAYQKALTAFKTNKG---ENHP--AVASVFVRLADMYNRTG-- 488 (729)
Q Consensus 448 --------------------------------~~~A~~~~~~al~~~~~~~~---~~~~--~~~~~~~~la~~~~~~g-- 488 (729)
...-...+++++.++.+... +..| -...+...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 11122345555555554431 1112 23456667777777766
Q ss_pred ------------------CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.-.++..++.+++.+.-. .-...+...++..+|.+|...|-..++--+++.++...-.
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~---~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK---DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh---hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 667777888888776433 2235667888999999999999888877777777766543
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.81 E-value=7.5 Score=33.04 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 641 TLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.....+++|+++....+. .+.+.+++..+. ..+| ...+..+.||.-+.+.++|+.++ .+++.+++..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence 445788999999876654 445555554443 2344 44677889999999999999999 99999999998
Q ss_pred c
Q 004812 717 R 717 (729)
Q Consensus 717 ~ 717 (729)
+
T Consensus 103 ~ 103 (149)
T KOG3364|consen 103 N 103 (149)
T ss_pred C
Confidence 6
No 380
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.58 E-value=42 Score=35.57 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=113.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004812 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
+..+-.++...-.+.-....+.+.+.+ ...-.++..++.+|... ..++-...+++.++.. .
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------f 129 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------F 129 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------c
Confidence 334445555555566667778888876 34457888999999988 4566677777777762 2
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004812 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
..+..-..|+..|.. ++...+..+|.+++...-.. .....+-.+|..+-.. --.+.+.- +....++....+..
T Consensus 130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~f---l~l~~kiqt~lg~~ 202 (711)
T COG1747 130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFF---LRLQKKIQTKLGEG 202 (711)
T ss_pred hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHH---HHHHHHHHHhhccc
Confidence 223444567777766 88899999999998765432 1111222333322221 11223322 22222232233222
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--------------------
Q 004812 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-------------------- 654 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------------------- 654 (729)
. ...++..+-.-|....++.+|++.+...++. +.....+.-++...++.
T Consensus 203 ~---~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--------d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~ 271 (711)
T COG1747 203 R---GSVLMQDVYKKYSENENWTEAIRILKHILEH--------DEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQS 271 (711)
T ss_pred h---HHHHHHHHHHHhccccCHHHHHHHHHHHhhh--------cchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhc
Confidence 1 1233344445566778999999999877776 33333344444433333
Q ss_pred cCChHHHHHHHHHHHHH
Q 004812 655 IGRLDDAIEILEFVVGI 671 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~ 671 (729)
-.++.+++.-|++.+..
T Consensus 272 ~rnf~~~l~dFek~m~f 288 (711)
T COG1747 272 GRNFFEALNDFEKLMHF 288 (711)
T ss_pred cccHHHHHHHHHHHhee
Confidence 34566677777666543
No 381
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.47 E-value=31 Score=34.04 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (729)
....+.+...||.+|.+.++|..|-..+.-. +...|. .......+..+|.+|++.++..+|..+..++-=+.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 3456778889999999999999887665321 111111 12345667899999999999999999998875443
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 627 (729)
... .++......-.-.|+++-..++|-+|...|-+..
T Consensus 175 a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 175 AES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred hcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222222222334566666777777766665543
No 382
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.40 E-value=56 Score=36.85 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004812 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (729)
++.....+..|-.++...|++++-...-.++.++.+-.. .. ...|..--......++-..+...|++++.-....
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~---~l--Wl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP---HL--WLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh---HH--HHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 345556667777788888988877766666666665432 11 1111111111122367777888888886432222
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
......+......+..+...++++.-...|.+++...-.... ........+..+-..|...-..++-+.++...+..
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 222223333333344455667888888999998876433321 12234455555555565555556666666666554
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.14 E-value=8.9 Score=37.61 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.+.++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-.......+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 4556888999999999999999999999988 8999999999999999999999999999998886544443
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.11 E-value=39 Score=35.30 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
......+.-++..++|..|...+...... .++... ...+..+ |..+...-++.+|.++++..+.....+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 34556677788999999999999998875 222222 2334444 455567889999999999877642110
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
......+..+..+ -++...+...............+....-++.-|.--...|+|+.|+..+-+++++.-+.
T Consensus 203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 0001111111111 12222222222211110000011112222233333346899999999999999886653
No 385
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.02 E-value=11 Score=33.84 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-
Q 004812 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLS-----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT- 487 (729)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 487 (729)
.|+.|..++..+=+....+...+.+|..++. .++...|++.+..+-+. ..+.+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 3455555555554555556666777765543 45788888888877664 2345556667666542
Q ss_pred ----CC--HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH------------------------HhcchHHHHH
Q 004812 488 ----GK--LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY------------------------ESMNELEQAI 537 (729)
Q Consensus 488 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~------------------------~~~g~~~~A~ 537 (729)
++ ..+|++++.++-.+- ...+.+.|...| ....+.+.|.
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 23 667888888876551 112233333333 2334556666
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCC
Q 004812 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~ 593 (729)
++..+|-++. ...+..++...|..- .+.++|..+-.+|.++.+.+..
T Consensus 189 qfa~kACel~---------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 189 QFAIKACELD---------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred HHHHHHHhcC---------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 6665555442 123445566665432 3678899999999888776543
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.53 E-value=8.1 Score=32.97 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004812 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358 (729)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 358 (729)
+.-..-..++++++........-.+....+.+|...+... .++..+|..+.... . ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~~---I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSKG---I---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHHT---T---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHcC---c---cHHHHHHHHHHHH
Confidence 4455666777777776543222222233344444444422 27888888765541 1 2457788999999
Q ss_pred HHHHhcCHHHHHHHHHHHH
Q 004812 359 AHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al 377 (729)
.+...|++.+|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=86.50 E-value=37 Score=33.91 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=68.8
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 004812 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ 605 (729)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 605 (729)
+....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..........+... ..++.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh-~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH-SSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh-hhHHH
Confidence 3445668999999999999887765 444566677788999999999999999999998888777766554333 34444
Q ss_pred HH-HHHHHcCCHHHHHHH
Q 004812 606 MG-LACVQRYSINEAVEL 622 (729)
Q Consensus 606 la-~~~~~~g~~~~A~~~ 622 (729)
++ ..|...|++..+...
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 54 445556777654443
No 388
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.49 E-value=7 Score=33.95 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
....+..+...-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+..|+...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3344455555555688888887777654444 6777888888899999999999999988887654
Q ss_pred CChHHHHHHHHHHHHHHHhcchH
Q 004812 511 VPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
.+......-.++.++..+|+.
T Consensus 74 --~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 --AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred --CCCchHHHHHHHHHHHhcCCh
Confidence 112233344566667666664
No 389
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.89 E-value=20 Score=38.36 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 429 AEVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
.....++.+||.+-.. ...-..++.+|.+|+...+..++ .....-|..+|..|++.+++.+|+..+-++-...+.
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555432 23345678999999999998884 334566788999999999999999999999888766
Q ss_pred CC
Q 004812 507 PV 508 (729)
Q Consensus 507 ~~ 508 (729)
..
T Consensus 351 Yn 352 (618)
T PF05053_consen 351 YN 352 (618)
T ss_dssp SB
T ss_pred cc
Confidence 43
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.68 E-value=50 Score=34.57 Aligned_cols=65 Identities=15% Similarity=-0.019 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
....+..++..++|..|...|...... ..+... .........|..++..-++.+|...++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444566778899999999999998763 111111 12222333455567788899999999987765
No 391
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=85.59 E-value=1e+02 Score=38.03 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh---C------------------
Q 004812 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G------------------ 406 (729)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~---g------------------ 406 (729)
..++....+|.++...|++.+|+..|..|+...+...+ ..+.+.++-.++.+.... |
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D--~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSND--YLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc--HhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 34566778999999999999999999999999988764 466666665554433211 0
Q ss_pred ------------------------------------------CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004812 407 ------------------------------------------DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 407 ------------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
.+++|+.+|.++.......-...-..++...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 13444445544432111111222345666777777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 445 LS--------------------RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 445 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.. .-.++..++.+++....... ...+....+..+|.+|...|-..++.-+++.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 67788888888887644322 245678899999999999999998888888887775
Q ss_pred h
Q 004812 505 E 505 (729)
Q Consensus 505 ~ 505 (729)
-
T Consensus 476 ~ 476 (1185)
T PF08626_consen 476 V 476 (1185)
T ss_pred c
Confidence 3
No 392
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.56 E-value=2.2 Score=41.30 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.|.-....|+.++|..+|+.|+.+ .|...+++..+|.+.....+.-+|- .+|-+|+.++|.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~AD-q~Y~~ALtisP~ 182 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEAD-QCYVKALTISPG 182 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhh-hhhheeeeeCCC
Confidence 3444456789999999999999988 5888889999999999999999999 999999999996
No 393
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.32 E-value=5.3 Score=41.90 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD---AIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 691 (729)
....|+..|.+++.. .|.....+.+.|.++.+.+-... |+.-...++.+ +|-...++++|+
T Consensus 389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la 452 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHH
Confidence 456677778887777 67777778888888777654444 44444444433 678888888999
Q ss_pred HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++..++++.+|+ .....+....|.
T Consensus 453 ~aL~el~r~~eal-~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 RALNELTRYLEAL-SCHWALQMSFPT 477 (758)
T ss_pred HHHHHHhhHHHhh-hhHHHHhhcCch
Confidence 9999999988888 877777777773
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=60 Score=35.03 Aligned_cols=173 Identities=15% Similarity=0.051 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHHhC-----CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC------------
Q 004812 532 ELEQAIKLLQKALKIYNDA-----PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER------------ 594 (729)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------ 594 (729)
-|++|...|.-+....+.. ....+.....+..++.+...+|+.+-|....++++=.+......
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 4556666666666655432 12234556778899999999999999999998888665442111
Q ss_pred --CC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHH-HHcCChHHHHHHHHHH
Q 004812 595 --KS--AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-TLGVYSNLAGTY-DAIGRLDDAIEILEFV 668 (729)
Q Consensus 595 --~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a 668 (729)
.+ ..+-.+++..-..+.+.|=+..|.++.+-.+.+ +|. ...+...+...| .+..+|+=-+++++..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--------dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--------DPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 011223333344556778899999988888877 444 333334444444 3445555555555444
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHhhccc
Q 004812 669 VGIREEKLGTANPDVDDEKRRLAELLKEAGR---VRSRKAQSLETLLDANSR 717 (729)
Q Consensus 669 l~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---~~~A~~~~l~~al~~~p~ 717 (729)
-.. ..+ ...|+... -..||..|..... ...|. ..+.+|+...|.
T Consensus 405 e~~-n~l--~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~-~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENM-NKL--SQLPNFGY-SLALARFFLRKNEEDDRQSAL-NALLQALKHHPL 451 (665)
T ss_pred Hhh-ccH--hhcCCchH-HHHHHHHHHhcCChhhHHHHH-HHHHHHHHhCcH
Confidence 221 111 11233322 2245666666555 45677 889999999983
No 395
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.09 E-value=6.8 Score=29.96 Aligned_cols=51 Identities=22% Similarity=0.050 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
.+..+...|..+-..|+ |++|+.+|.+|+..+.......+++..-..+...
T Consensus 5 ~a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~k 55 (77)
T cd02683 5 AAKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQK 55 (77)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 45567888888888987 9999999999999998876666665554444433
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=47 Score=33.22 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=69.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
.+..+.++.++|++++++..........+.........+|.++...|+..++.+.+...-.......+- .+.....++.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~ 161 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYS 161 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHH
Confidence 344566799999999999988877777666778888899999999999999999998887766555432 2323344455
Q ss_pred HHH-HHHHcCCHHHHHHH
Q 004812 480 LAD-MYNRTGKLRESKSY 496 (729)
Q Consensus 480 la~-~~~~~g~~~~A~~~ 496 (729)
++. .|...|++...-..
T Consensus 162 lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 544 45557777654433
No 397
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.37 E-value=23 Score=29.57 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---h----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP---D----TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+..+|...++.+++-.++-.|++|+.+.+++...... + ......+||..+..+|+.+=.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999999998887422111 1 12256799999999999999999999887655444
Q ss_pred c
Q 004812 676 L 676 (729)
Q Consensus 676 ~ 676 (729)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.22 E-value=2.7 Score=28.01 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+.||.+|..+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999985
No 399
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.03 E-value=24 Score=29.48 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
..+|...+..+++-.++-+|++|+.+.++....+. .-......+||..+...|+.+-.++|++-|-+......
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi 84 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI 84 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence 45677777777777888888888777766531111 11234567899999999999999999988777655444
Q ss_pred C
Q 004812 509 P 509 (729)
Q Consensus 509 ~ 509 (729)
|
T Consensus 85 P 85 (140)
T PF10952_consen 85 P 85 (140)
T ss_pred c
Confidence 3
No 400
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.96 E-value=15 Score=37.71 Aligned_cols=149 Identities=18% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHh
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--VPPEEIASGLTDVSSIYESMNE---LEQAIKLLQKALKIYND 549 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 549 (729)
..++..|........|++|+.++-.|-+.+....+. ..-...+..-..+.++|+.+.+ ..+|..-+..+.+-+..
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 344555666666777777777776665554332100 0011123334445667776654 33455444444444433
Q ss_pred CCCCC------------C---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH------H
Q 004812 550 APGQQ------------S---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG------L 608 (729)
Q Consensus 550 ~~~~~------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la------~ 608 (729)
.+|.. + .+...+...|.+.+.+|+-++|.++++.+...+....-.+... ..+..+| .
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~l--sllv~mGfeesdaR 321 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETL--SLLVGMGFEESDAR 321 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHH--HHHHHcCCCchHHH
Confidence 33322 1 2334556679999999999999999999998877665443221 2222222 1
Q ss_pred --HHHHcCCHHHHHHHHHH
Q 004812 609 --ACVQRYSINEAVELFEE 625 (729)
Q Consensus 609 --~~~~~g~~~~A~~~~~~ 625 (729)
+-.-.|+.+.|..+..+
T Consensus 322 laLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 322 LALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHHhccccHHHHHHHHHH
Confidence 11224677777776643
No 401
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.02 E-value=7.8 Score=28.87 Aligned_cols=49 Identities=24% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (729)
+..+...|..+-..|+ +++|+.+|.+|+..+-......+++..-..+..
T Consensus 5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~ 53 (69)
T PF04212_consen 5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQALRQ 53 (69)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4567788888888997 999999999999998776554444444444433
No 402
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.73 E-value=1.6 Score=40.49 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=51.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
.....++.+.|.+.|.+++.+ -|+....|+.+|....+.|+++.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345678999999999999999 89999999999999999999999999999999863
No 403
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.73 E-value=92 Score=35.32 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004812 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 245 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
|.-|+.+.+... .+......++...|..++..|++++|...|-+.+...
T Consensus 350 y~~Ai~LAk~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 455555555442 2334567788888999999999999999999998764
No 404
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.21 E-value=10 Score=28.84 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (729)
.+..++..|...-..|+ |++|+.+|.+|+..+-......+++.....+...
T Consensus 5 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k 55 (75)
T cd02678 5 KAIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESIRAK 55 (75)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34567788888888886 9999999999999998876555555554444433
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.18 E-value=61 Score=32.21 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=27.8
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
+..+..+-++....++++ .+.-+.+|..|+.- ..--..+|..++++|++...
T Consensus 196 RERnp~~RI~~A~~ALeI---------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEI---------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HhcCcHHHHHHHHHHHhc---------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence 334445555555666666 34445555555432 22334566667776666543
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.10 E-value=1e+02 Score=34.74 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 004812 272 AAIYCSLGQYNEAIPVLEQ 290 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~ 290 (729)
-.++...|+|+.|+.++-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 4566778999999999877
No 407
>PRK09169 hypothetical protein; Validated
Probab=81.07 E-value=1.8e+02 Score=37.49 Aligned_cols=472 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC
Q 004812 243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG 322 (729)
Q Consensus 243 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 322 (729)
..+.+|...+-......+......--..++.++..+++|.+...+-.-+..+......... .....--..+++++..+.
T Consensus 263 ~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALS 341 (2316)
T PRK09169 263 EACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG-LLQAMNAQAVANALNALS 341 (2316)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHh
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004812 323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402 (729)
Q Consensus 323 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~ 402 (729)
++.+...+-.-+..+...+..........--..+++++.-..+|.+...+-.-+..+..............--..++++.
T Consensus 342 KWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaL 421 (2316)
T PRK09169 342 KWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANAL 421 (2316)
T ss_pred cCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHH
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDC--SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (729)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (729)
....++..+..+-.-+..+.......+.....+. .++.++..++++.+...+-..+..++..+...-.......-..+
T Consensus 422 nALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~l 501 (2316)
T PRK09169 422 NALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGL 501 (2316)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004812 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (729)
Q Consensus 481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (729)
++++....++.+...+-.-+..+..... ..........-..+++++....++.+--.+-..+..+..............
T Consensus 502 AN~LnALsKwp~~~~c~~aA~aLA~rla-~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~ 580 (2316)
T PRK09169 502 ANALNALSKWPDSDACRAAAEALADRLA-QDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSAL 580 (2316)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHh-cChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhcc
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 561 -EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 561 -~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
-..+++++....++...-.+.+-+..+...+...........-..++.++....++.+...+-.-+..+...+......
T Consensus 581 naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l 660 (2316)
T PRK09169 581 NAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGL 660 (2316)
T ss_pred CHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchh
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHh
Q 004812 640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS------RKAQSLETLLD 713 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~------A~~~~l~~al~ 713 (729)
-..-.-..+++++....++.+.-.+-..+..+...+....++.....-..+++++....++.+ |. ..+-..|.
T Consensus 661 ~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~-~~LA~rL~ 739 (2316)
T PRK09169 661 PRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAA-EALAGRLA 739 (2316)
T ss_pred HHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHH-HHHHHHHh
Q ss_pred hccc
Q 004812 714 ANSR 717 (729)
Q Consensus 714 ~~p~ 717 (729)
.+++
T Consensus 740 ~~~~ 743 (2316)
T PRK09169 740 ADAD 743 (2316)
T ss_pred cChH
No 408
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=80.86 E-value=14 Score=28.11 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
.+..+...|...-..|+ +++|+.+|.+|++.+.......+++.....+.
T Consensus 7 ~A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~ 55 (77)
T smart00745 7 KAKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRREAVK 55 (77)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34566778888888886 99999999999999988766555555444333
No 409
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.42 E-value=2.2e+02 Score=38.26 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhCC
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-ELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 551 (729)
.+++....|.+....|-++.++..+.+...+. ...-.+...-+..-+.+|.... ....+++..+..--.+
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp-----~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~y---- 2805 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLP-----NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMY---- 2805 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHH----
Confidence 34555566666667777777766666655541 1111111112222233333332 3333333332211100
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----YS----INEAVELF 623 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~----~~~A~~~~ 623 (729)
-.....+..+...|..+.+.|+.++|-..|..|+++... ...+|...|.....+ +. -..|+.+|
T Consensus 2806 F~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~--------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCy 2877 (3550)
T KOG0889|consen 2806 FSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG--------LGKAWAEWGKYLDNRFNKEPVNISFACNAVSCY 2877 (3550)
T ss_pred HhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 011234667778899999999999999999999998654 355666666554432 11 23455655
Q ss_pred HHHHHH
Q 004812 624 EEARSI 629 (729)
Q Consensus 624 ~~al~~ 629 (729)
-+|...
T Consensus 2878 LqA~~~ 2883 (3550)
T KOG0889|consen 2878 LQAARL 2883 (3550)
T ss_pred HHHhcc
Confidence 555544
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.35 E-value=7.9 Score=40.23 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
++..|.+++.-+|+|..|++.++-.---.+.++..-.+-...+++.+|-+|..+++|.+|++.|...+-...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999988765322112222222345667889999999999999999999998876543
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=29 Score=37.43 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
+..++|+++.|..+..++-... -|..||.+....+++..|.++|.++..+
T Consensus 646 lal~lgrl~iA~~la~e~~s~~--------------Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANSEV--------------KWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcchH--------------HHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4567788998888777654331 2888999999999999999999988666
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.02 E-value=1.3e+02 Score=35.46 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH------hcch----HHHHHHHHHHH
Q 004812 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------SMNE----LEQAIKLLQKA 543 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~a 543 (729)
....+.+|.+|...|+..+|+.+|.+|..-..+ ..++..+..-.. ..|+ ...|+.||.++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge----------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE----------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhcccc----------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH
Confidence 455677899999999999999999999876322 112222211100 2232 22367777777
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (729)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 623 (729)
++++... +..+.+......|++. .++.. +..+.....+-.-...+|.+-+|...+
T Consensus 990 ~rlle~h---------------------n~~E~vcQlA~~AIe~---l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 990 VRLLEEH---------------------NHAEEVCQLAVKAIEN---LPDDN-PSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHh---------------------ccHHHHHHHHHHHHHh---CCCcc-hhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 7776654 3334444444444443 33333 335556666666677777777776544
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH-----HHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE-----ILEFVVG-IREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~-~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
-+- ++......++..|..++++.|+++.=.+ +-++... +.+...-...-.....|..|=-.+...
T Consensus 1045 ~~n---------pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1045 LRN---------PDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred HcC---------CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence 331 1122333467777778888877643322 1122222 111111111112222344444567788
Q ss_pred CCHhHHHHHHHHHHHhhccc
Q 004812 698 GRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 698 g~~~~A~~~~l~~al~~~p~ 717 (729)
+++.+|..-.|+.+..+..+
T Consensus 1116 hN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred cchhHHHHHHHHHHHHhccc
Confidence 99999987788988887665
No 413
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.62 E-value=26 Score=29.97 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 393 ADRRLMGLICETKGD---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
.+.+++++++....+ ..+.+..++..+. ...+...-...+.|+..+++.++|+.++.+.+..++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456777777766554 4455556654442 2334445567788999999999999999999998887
No 414
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.18 E-value=73 Score=31.92 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
..|+++.+..++ .......-..-|.+++..++|.+....+..+-.....
T Consensus 42 ~~y~Q~~q~~kk-----~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 42 KAYEQSKQFTKK-----KKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hHHHHHHHhhhh-----hhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 455666655433 1122222234577888888888887777666554433
No 415
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=79.10 E-value=18 Score=27.43 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~ 275 (729)
+..+...|...-..|+ +++|+.+|..|+..+.......+++..-..+......|
T Consensus 6 a~~l~~~Av~~D~~g~-~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~y 59 (75)
T cd02656 6 AKELIKQAVKEDEDGN-YEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEY 59 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 4456677777778886 99999999999999988766555555544444433333
No 416
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.08 E-value=7.2 Score=39.02 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004812 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (729)
.+.-+...|+-.+.+++++.|...|..|..+...++|..+.....+++..|..++..+++..++-.+
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455788999999999999999999999999999999999999999999999999988877665443
No 417
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=78.99 E-value=13 Score=35.93 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
+.....++=..+...++++.|..+.++.+.+ +|....-+...|.+|.++|.+.-|++.++..++.+ |
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~-----P 246 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC-----C
Confidence 4556667777888899999999999999998 78877778889999999999999999999988775 5
Q ss_pred CChhHHHHHHHHHHH
Q 004812 679 ANPDVDDEKRRLAEL 693 (729)
Q Consensus 679 ~~p~~~~~~~~La~~ 693 (729)
+.|....+...+..+
T Consensus 247 ~~~~a~~ir~~l~~l 261 (269)
T COG2912 247 DDPIAEMIRAQLLEL 261 (269)
T ss_pred CchHHHHHHHHHHHH
Confidence 566655555544443
No 418
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=78.89 E-value=17 Score=27.58 Aligned_cols=52 Identities=21% Similarity=0.083 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA 272 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la 272 (729)
.+..++..|...-..|+ |++|+.+|.+|++.|-......+++..-..+....
T Consensus 5 ~Ai~lv~~Av~~D~~g~-y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~ 56 (75)
T cd02684 5 KAIALVVQAVKKDQRGD-AAAALSLYCSALQYFVPALHYETDAQRKEALRQKV 56 (75)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34567788888888886 99999999999999988766666666544444333
No 419
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=78.80 E-value=1.5 Score=44.92 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004812 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 696 (729)
-+++-+.+++.++.||+........|-+|..+|+++.-++++..|+.+.++.+.|-.|.+...+...++++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 3566677888899999987766778899999999999999999999999999999999999888888877643
No 420
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.66 E-value=5.6 Score=39.79 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.-+...|+-...++++++|...|..|..+..+++|..|.++..+++..|..++..++.+.++
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999888776
No 421
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.13 E-value=37 Score=36.63 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHHHcCCCChhHH
Q 004812 606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF-VVGIREEKLGTANPDVD 684 (729)
Q Consensus 606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~p~~~ 684 (729)
+...+...+....+.-.+..++.. +|....++.+|+.+....|....+...+.+ +... .|.+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 677777788888888888888888 889999999999999888887777766665 4333 35554
Q ss_pred HHHHH------HHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 685 DEKRR------LAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 685 ~~~~~------La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..... ++..+..+|+..++. ..++++.++.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~d~~p~ 174 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAE-LALERAVDLLPK 174 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhhhh
Confidence 44444 488999999999999 999999999886
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.60 E-value=79 Score=31.45 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004812 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
...+..+..+-++....++++ ++..+.+|..|+.--. --..+|.++++++++..+. .
T Consensus 193 ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~-------------~ 249 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET-------------I 249 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH-------------H
Confidence 334445556666677778887 6778888877775332 3366788888888877322 1
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
++........|...+|.. . .+...+..+-..++.+..++|+..+|++.++...+
T Consensus 250 yr~sqq~qh~~~~~da~~---------r---RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 250 YRQSQQCQHQSPQHEAQL---------R---RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhHHHHhhhccchhhhh---------h---cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 111222222222222210 0 11122234445677777777777777777765543
No 423
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.28 E-value=1.4e+02 Score=34.04 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=37.6
Q ss_pred ccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 004812 199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF 252 (729)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~ 252 (729)
....|.-|+........+....+..+...|..++..|+ +++|..+|-+++...
T Consensus 346 kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGFL 398 (933)
T ss_pred HhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHcccC
Confidence 33334455533334444444567788999999999997 999999999988653
No 424
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.26 E-value=43 Score=32.76 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
.+...+..|...|.+.+|+.+.++++.+ ++.....+..+-.++..+|+--.|...|++.-+.++...|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 3455678889999999999999999886 33345667778888999999999999999998888887776444
Q ss_pred hH
Q 004812 640 DT 641 (729)
Q Consensus 640 ~~ 641 (729)
+.
T Consensus 353 ds 354 (361)
T COG3947 353 DS 354 (361)
T ss_pred hh
Confidence 33
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.77 E-value=11 Score=25.18 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 478 VRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
+.||..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 426
>PF12854 PPR_1: PPR repeat
Probab=76.35 E-value=5.5 Score=24.72 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 642 LGVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 642 ~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
..+|..|...|.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34889999999999999999999875
No 427
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.32 E-value=31 Score=26.18 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV 270 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 270 (729)
.+..++..|...-..|+ |++|..+|..++..+.......+++..-..+..
T Consensus 5 ~A~~l~~~Ave~d~~~~-y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~ 54 (75)
T cd02677 5 QAAELIRLALEKEEEGD-YEAAFEFYRAGVDLLLKGVQGDSSPERREAVKR 54 (75)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 45667788888888886 999999999999999887666666555444433
No 428
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.26 E-value=75 Score=34.29 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 558 AGIEAQMGVMYYM--LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 558 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
..++.+||.+-.- ...-..++.+|.+|+...+.....++. .-|..+|-.|++.+++.+|+.++-+|-...+.
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444322 123456789999999999888776543 45777899999999999999999999877554
No 429
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.04 E-value=1.9e+02 Score=34.48 Aligned_cols=131 Identities=21% Similarity=0.117 Sum_probs=61.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG--ENHPAVASVF 477 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~ 477 (729)
.+-..+++|+.|+.++..+- +.. +-..-..-.+.|-|.+|+.+|.--.+..+.+.. .++-..-.-+
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~------~~~------~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~ 955 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECG------ETY------FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMS 955 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcC------ccc------cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccc
Confidence 34445677777777765441 000 011112233456666666665433333221110 0000111112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 478 VRLADMYNRTGKLRESKSYCENA------LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
..-|.+|...|+.++|+..|+.+ +.+..+.. .........-..|+.-+..++++-+|-+.....+
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~--~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS--EGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 23456677777777777776543 33433321 1122233333456666666777766666555444
No 430
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.01 E-value=14 Score=38.44 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=79.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
..|+...|-.....++...+. . +......+.+...+|+|+.|...+..+-.+. + ....+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~----~----p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~----s~~~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ----D----PVLIQLRSVIFSHLGYYEQAYQDISDVEKII----G----TTDSTLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC----C----chhhHHHHHHHHHhhhHHHHHHHhhchhhhh----c----CCchHHHHHH
Confidence 457776666655555543211 1 1233345788889999999998877665552 1 1122445556
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.-...+|++++|....+-.+. +.-+..++..--|..-..+|-++++. .++++++.++|.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~--------~eie~~ei~~iaa~sa~~l~~~d~~~-~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLS--------NEIEDEEVLTVAAGSADALQLFDKSY-HYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhc--------cccCChhheeeecccHHHHhHHHHHH-HHHHHHhccCCh
Confidence 667788999998877665553 12233344444455566778899999 999999999987
No 431
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=1.3e+02 Score=32.75 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=74.5
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AISKL 588 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~ 588 (729)
++.++....... +...+...+....+...+..++...+.. +.+..+|+......|..-.+...+.. +....
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-------CPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 334555544444 6666777777777777676666654433 35566777776666666555554443 33321
Q ss_pred HHhCCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004812 589 RAIGERKSAF--FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 589 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
.. +... ....++.++.....+|+..++....+++..+ .|....+...+.....++-.
T Consensus 133 ~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~--------~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 133 PD----NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL--------LPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred cc----hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------hhhhhhhHhHHHHHHHHhcc
Confidence 11 1111 1112333788888889999999999998888 55555555555554444433
No 432
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.63 E-value=40 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
.+...|.-+...|++++|+.+|..+++.+...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34455666778899999999999999998773
No 433
>PF12854 PPR_1: PPR repeat
Probab=72.59 E-value=7.9 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQS 291 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (729)
...|..+-..|++.|+.++|+++|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 556888999999999999999999864
No 434
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.37 E-value=32 Score=25.47 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHH
Q 004812 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEK 687 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~ 687 (729)
+...|.-+...|++++|+.+|.++++.+...+. ..+|.....+
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l 51 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQAL 51 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344555667789999999999999998776654 2234443333
No 435
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.68 E-value=31 Score=32.82 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004812 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
.-.+..|+++.|+++..-|++.....|+... .++.-...-+......|+.-+. .++.....+ ...-+.+....
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l-~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDL-TTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHH-HhcCCCChHHH
Confidence 3456789999999999999998666654322 2333334445555566653221 123333333 23334445556
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACV---------QRYSINEAVELFEEARSI 629 (729)
Q Consensus 600 ~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~ 629 (729)
+..+..+|..++ ..++...|+.++++|+.+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 777888888774 456788999999999999
No 436
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.54 E-value=22 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
+..+...|.-+-..|++.+|+.+|+++++.+.+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44556667777889999999999999999876543
No 437
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.41 E-value=2e+02 Score=34.17 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchh------------------hccccc--hHHHHHHHHHHHHHHHHcCCH
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI------------------EEGQEH--ALAKFAGHMQLGDTYAMLGQL 324 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~ 324 (729)
....+.+|.+|...|+..+|+..|.+|..-... ..|... +......|...-+++...+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 344667899999999999999999998764310 011111 111122333444455555566
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004812 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (729)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~ 404 (729)
+.+++...+|++. +++++|..+..+..+-..+..+|.+-+|...+-+--. ....-.++..+-.+++.
T Consensus 1000 E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd---------serrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD---------SERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHh
Confidence 6666666666555 3556677777778777778888888877665433211 22234567777788888
Q ss_pred hCCHHHHHHH--------HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Q 004812 405 KGDHEAALEH--------LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF-AYQKALTA 461 (729)
Q Consensus 405 ~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 461 (729)
.|+++.-.+. ++.-+...............|..|-..+...++|.+|-. .|+.+..+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 7776533221 111000000111112222333444445667788877654 45655554
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.28 E-value=66 Score=37.23 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhCCCC
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~ 553 (729)
-+..|+.+|...|++++|++.+.+...-... .+......+-.+-..+...+.. +-..++-.-.++..+.. +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~-----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi 579 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD-----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GI 579 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc-----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-he
Confidence 4667899999999999999999988774310 1112222333333333334433 44444444444333322 10
Q ss_pred C------CcHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--------cCCHHH
Q 004812 554 Q------STVAG-IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINE 618 (729)
Q Consensus 554 ~------~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~ 618 (729)
. ...+. +-.....-|......+-++.|++.++...+.... ..+..++..|.. .++-++
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-------~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-------LLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-------HHHHHHHHHHHHHHhhccCchhcccc
Confidence 0 00001 1112233356677788889999988876443222 122222222221 123345
Q ss_pred HHHH-HHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 619 AVEL-FEEARSILEQECGPYHPDT-------LGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 619 A~~~-~~~al~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+.+. +++-+..+.......+|.. ...|...+.++.++|+.++|+..|-..+.
T Consensus 653 ~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 653 APETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred chhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 5555 2332222222222222221 34677888889999999999999887665
No 439
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.08 E-value=2.3e+02 Score=33.79 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 604 NQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
..|+.-+..++++-+|.+...+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4556666777777777777766655
No 440
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.63 E-value=1.2e+02 Score=30.43 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
-.+-|.++...++|.+....+..+-..+.
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 34567788888888887777766555444
No 441
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.60 E-value=4.3e+02 Score=35.93 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM---GLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.+.+.+..|.+..+.|-++-++..+.+...+ .......+...+ +.+|+... ..+..+++.....
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytl-------p~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sT 2801 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTL-------PNVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIEST 2801 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-------CcchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcc
Confidence 4455556666666666666666655554443 111122222222 23333322 2233333333221
Q ss_pred cCC--CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 634 CGP--YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 634 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
.-. .+...+..+..-|....+.|+.++|-..|..|+++..
T Consensus 2802 Nl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~ 2843 (3550)
T KOG0889|consen 2802 NLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD 2843 (3550)
T ss_pred cHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh
Confidence 110 1334556777889999999999999999999999864
No 442
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.04 E-value=52 Score=25.10 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
..+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34445566667789999999999999999766
No 443
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.76 E-value=18 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHH--HHHHHhhcc
Q 004812 685 DEKRRLAELLKEAGRVRSRKAQS--LETLLDANS 716 (729)
Q Consensus 685 ~~~~~La~~~~~~g~~~~A~~~~--l~~al~~~p 716 (729)
+.++.+|-.+...|++++|+ +. |+-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~-~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAI-HFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhcc
Confidence 35678899999999999999 99 447766665
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.50 E-value=21 Score=38.47 Aligned_cols=79 Identities=29% Similarity=0.264 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
...++..+..+|-.++|++ +..+. ...-.+..+.|+++.|..+..++-.
T Consensus 617 rt~va~Fle~~g~~e~AL~-------~s~D~-----------d~rFelal~lgrl~iA~~la~e~~s------------- 665 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALE-------LSTDP-----------DQRFELALKLGRLDIAFDLAVEANS------------- 665 (794)
T ss_pred hhhHHhHhhhccchHhhhh-------cCCCh-----------hhhhhhhhhcCcHHHHHHHHHhhcc-------------
Confidence 4456666666666655544 33222 1123345667788777766555432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
..-|..||.+....+++..|.++|.++...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 245777888888888888888888887654
No 445
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.23 E-value=16 Score=23.06 Aligned_cols=29 Identities=28% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH--HHHHH
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQ--MALDI 379 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~ 379 (729)
+.++.+|..+...|++++|+..|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 457788999999999999999954 54443
No 446
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.10 E-value=1.7e+02 Score=30.61 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
+..+..++.++.+.|.+++|.+++.-.+..-.++... + ...++..+-..-...+...+|+.+++-++..
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~-p--~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS-P--LLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC-c--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 4556778899999999999999887665322211111 1 1223334445555667788888888777554
No 447
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.03 E-value=13 Score=36.99 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004812 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 696 (729)
|..+|.+|+.+ .|.....|..||.++...|+.-.|+-+|-+++-. ..|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999999 8999999999999999999999999999999853 2454 6678888888777
No 448
>PF13041 PPR_2: PPR repeat family
Probab=65.83 E-value=23 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.+|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 47888999999999999999999988754
No 449
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.31 E-value=1.4e+02 Score=29.02 Aligned_cols=170 Identities=13% Similarity=-0.020 Sum_probs=102.8
Q ss_pred cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 004812 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML-GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356 (729)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 356 (729)
...-..|+.+.+.++.+... ...+|.-.-.++..+ .+..+-+.++.+.++- .|..-.+|...
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA---------nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~--------npKNYQvWHHR 118 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA---------NYTVWQYRRVILRHLMSDLNKELEYLDEIIED--------NPKNYQVWHHR 118 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc---------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------CccchhHHHHH
Confidence 34456677777777777521 222233333333333 3455666677666655 67788888888
Q ss_pred HHHHHHhcCHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004812 357 AEAHVQALQFS-EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD 435 (729)
Q Consensus 357 a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 435 (729)
-.+....|++. .-+++.+.++....++. .+|...-.+....+.++.-+.+..+.+..-..++ .+|
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNY--------HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN------SAW 184 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNY--------HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN------SAW 184 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccch--------hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc------chh
Confidence 88888888887 77888888888665554 3466666777777889998888877765322221 122
Q ss_pred HHHHHHHHH-cCC-----HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 436 CSIGDTYLS-LSR-----YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 436 ~~la~~~~~-~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
+..-.+... .|- .+.-+.+..+.+.+ .|....+|..|..++..
T Consensus 185 N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~--------vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 185 NQRYFVITNTKGVISKAELERELNYTKDKILL--------VPNNESAWNYLKGLLEL 233 (318)
T ss_pred heeeEEEEeccCCccHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHh
Confidence 211111111 121 22334444555554 67888889999888886
No 450
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=64.91 E-value=71 Score=28.42 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC----CC--------------------------CCHhHHHHHHHHH
Q 004812 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGAN----GK--------------------------PSLELVMCLHVIA 272 (729)
Q Consensus 223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~----~~--------------------------~~~~~~~~~~~la 272 (729)
.....|+..+..|+ .++|+....+|...+..... .. ............+
T Consensus 4 ~~i~~Ar~aL~~g~-~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 4 RDIQKARLALFQGD-TDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHH
Confidence 34677888899997 99999999999887653210 00 0122345566778
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 336 (729)
.-.+..|+...|.+.+..+-.-. ......-|..........+..+...|++.+|...+..++.
T Consensus 83 ~~~l~~g~~~~A~~~L~~~~~ei-~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 83 NELLKKGDKQAAREILKLAGSEI-DITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-EE-EEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhcccc-eeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88999999999999998764321 1111223445555677889999999999999999988875
No 451
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=64.68 E-value=92 Score=30.75 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 004812 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (729)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 612 (729)
|+.+|.+|..+.|.. +..|+.+|.++...|+.-.|+-+|-+++-. . .+ ...+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~-------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~-~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------GNPYNQLAVLASYQGDDLDAVYYYIRSLAV------R-IP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------S-B---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCcccchhhhhccccchHHHHHHHHHHHhc------C-CC-cHHHHHHHHHHHHH
Confidence 688999999999988 478999999999999999999999888753 1 12 25566777776665
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=64.60 E-value=44 Score=28.40 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 004812 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (729)
=..++++++..+.....-.+++....+|...+... + ++.++|.-.... +.....+..|...|..+...|
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~---dp~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g 113 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D---EPRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAG 113 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C---CHHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcC
Confidence 34556666665544322345666777777777643 2 344444433321 334455777888999999999
Q ss_pred CHHHHHHHHHH
Q 004812 573 NYSDSYDSFKN 583 (729)
Q Consensus 573 ~~~~A~~~~~~ 583 (729)
++.+|..+|+.
T Consensus 114 ~~~~A~~iy~~ 124 (125)
T smart00777 114 RYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHc
Confidence 99999998864
No 453
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.43 E-value=2.1e+02 Score=30.73 Aligned_cols=167 Identities=11% Similarity=-0.036 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (729)
+..+-.++.....+.-....+.+++.. ...-.+++.++.+|... ..++-..++++..+.+-+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD------- 131 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND------- 131 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-------
Confidence 444555555555666667778888877 34457888999999887 4566667777776665332
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
+..-..|+..|.. ++...+..+|.+++..+.........-.+|..+-.. --.+.+.-+.... ++-... | .
T Consensus 132 -vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~---kiqt~l-g--~ 201 (711)
T COG1747 132 -VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQK---KIQTKL-G--E 201 (711)
T ss_pred -HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHH---HHHHhh-c--c
Confidence 2345567777766 899999999999986543333333333344333211 1223333222222 221111 1 1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.....++..+-.-|....++.+|++.+...++.-
T Consensus 202 ~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 202 GRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred chHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 1222333344455667788999999988777763
No 454
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.86 E-value=41 Score=25.84 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
...|..+-..|+.++|+.+|++++..+.+......+ .....-.++.|..+-++...
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHH
Confidence 334444556689999999999999998776553222 12222345666665555443
No 455
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.81 E-value=64 Score=24.66 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHH
Q 004812 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDE 686 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~ 686 (729)
+...|.-+...|++++|+.+|.++++.+...+. ..++.....
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~ 51 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKN 51 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 344555667889999999999999999877653 333443333
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.41 E-value=58 Score=31.03 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred HHHcCChHHHHHHHHHhcccchhhcc---ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004812 275 YCSLGQYNEAIPVLEQSIEIPVIEEG---QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (729)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (729)
.+..|+|+.|+.+..-|++.....+. .+.+...+.-....+......|+.-+. .++.....+. ....-.+.-.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHHH
Confidence 46789999999999999987533322 122223333344455555666653221 1222222222 111111233445
Q ss_pred HHHHHHHHHH---------HhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 352 TCRYLAEAHV---------QALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 352 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
.+..+|..+. ..++...|+.++++|+.+.++.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 5666677663 456788999999999999987764
No 457
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=63.21 E-value=13 Score=37.31 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=82.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-----------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
..+...++.+++..|..-|.+++.......... ...-.....+++.+-+..+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 346667888899999888888887654211100 0111234556777777888888887776666663
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCH
Q 004812 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~ 700 (729)
++....+++..+..+....++++|++.++.+... .|........+..+-....++
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHHH
Confidence 6777779999999999999999999999988765 466555555555444444333
No 458
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=63.14 E-value=12 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788999999999999999998764
No 459
>PF13041 PPR_2: PPR repeat family
Probab=63.10 E-value=28 Score=23.63 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
.+|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 46677888899999999999999988764
No 460
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.22 E-value=13 Score=21.80 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+|+.+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998765
No 461
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=61.99 E-value=89 Score=36.83 Aligned_cols=125 Identities=24% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCCCCCCCC-CCCCCC-CCCCCCCccccHHHHHHhhhhhccCCCCCCCCCCCCCCcccchhhhhhhhhc
Q 004812 20 GNSTPVKENSVSNKSPKSTP-CPQSPR-DQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVG 97 (729)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (729)
++.+|...+-..+=||.||+ ||+||. ++.++.--+++| -|---|..=||.++|
T Consensus 1474 sptspsysptspsysptspsysptspsysptspsysptsp------sysptspsysptsps------------------- 1528 (1605)
T KOG0260|consen 1474 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP------SYSPTSPSYSPTSPS------------------- 1528 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCC-------------------
Q ss_pred ccchhhhhhhhhhccCCCCCCCCccc---ccCCCCCCCcccccchhccc-cCCccccCCCCcccccCCCCcccccccCCC
Q 004812 98 GEMREVEIMEEEEVEKPEDDSHSISS---SKKGSSSGSKKSGKLEKSQS-AGTKSISSGHSKKVSHSGMDSEVSSKTNSK 173 (729)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 173 (729)
=.+-.++.|..| |+.+++-..-.-+....+.+ ..++++-+..|...+.+..=|..+++-+|.
T Consensus 1529 --------------ysptspsysptspsysptspsysptspsysptsp~ysptspsysptspsys~~~~ysp~sp~yspt 1594 (1605)
T KOG0260|consen 1529 --------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPT 1594 (1605)
T ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCC
Q 004812 174 GKSLPEKPPI 183 (729)
Q Consensus 174 ~~~~~~~~~~ 183 (729)
+.+.....+.
T Consensus 1595 sp~ysp~sps 1604 (1605)
T KOG0260|consen 1595 SPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCC
No 462
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.15 E-value=1.1e+02 Score=32.35 Aligned_cols=120 Identities=11% Similarity=-0.021 Sum_probs=67.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004812 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (729)
Q Consensus 320 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg 399 (729)
..|+...|-.-...++... |..+......+.++..+|+|+.+...+..+-.+..... .+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--------~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--------STLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--------hHHHHHH
Confidence 3455555555555555442 33333445567778888888888887766554443222 2345555
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
.....+|++++|.....-.+ ++..+...+...-+.....+|-++++..+.++.+.+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l------~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 365 RSLHGLARWREALSTAEMML------SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HhhhchhhHHHHHHHHHHHh------ccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 66677888888877655433 111111222222333344556677777777777665
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.26 E-value=2.3e+02 Score=29.51 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHH-------------
Q 004812 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL--ACVQRYSINEAVELFEEAR------------- 627 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al------------- 627 (729)
..+..++..++|..|...|.+++... ..... ......+..+.. .++..-++++|.+++++.+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~~-~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL--LSAVN-HTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--cChhh-hhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhh
Confidence 45667788999999999999888652 11111 112234444444 4456778999999998211
Q ss_pred ------HHHHHhcC------------CCChhHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHHH
Q 004812 628 ------SILEQECG------------PYHPDTLGVYSNLAGT--YDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 628 ------~~~~~~~~------------~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
.....+.. ..+|....+...++++ -..+|+|+.|+..+-+++++..+.
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q~ 279 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQI 279 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 00000000 0111111111222222 247899999999999998876543
No 464
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=58.23 E-value=1.4e+02 Score=26.61 Aligned_cols=131 Identities=12% Similarity=0.038 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
++-+-|...++..+... +......+...+-..-...|.|.+|..++.+.++.- ...+...+|..++.|
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHH
Confidence 55566666666654431 111122334444445566789999999999998862 245667788888888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
.....+-.--+.--++..+...-...+.-|..+.+-...|..-.+.|...+|. +.++.++..+
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~ae-knL~~l~~Sn 201 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAE-KNLKNLLASN 201 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhc
Confidence 87765544444444444444444556777888888777888888999999999 9999888754
No 465
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.90 E-value=65 Score=24.48 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEI 254 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~ 254 (729)
.+..+...|...-..|+ |++|+.+|.+|++.|-.
T Consensus 5 kai~Lv~~A~~eD~~gn-y~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGN-AEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhh-HHHHHHHHHHHHHHHHH
Confidence 35567778877777885 99999999999999876
No 466
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=57.51 E-value=21 Score=21.43 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+|..+-..|.+.|++++|.++|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466788889999999999999998764
No 467
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=57.29 E-value=23 Score=21.32 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+|+.+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466777889999999999999998765
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.80 E-value=78 Score=26.92 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHH
Q 004812 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318 (729)
Q Consensus 239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 318 (729)
..-..+++++++.+.....=.+++.....+...+... .++..+|..+.... .|... +..|...|..+
T Consensus 43 s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~---IG~~~----AlfYe~~A~~l 109 (125)
T smart00777 43 SGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKG---IGTKL----ALFYEEWAQLL 109 (125)
T ss_pred hhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCC---cchhh----HHHHHHHHHHH
Confidence 3446677888887766544455677766666666542 44566666654432 22222 23477889999
Q ss_pred HHcCCHHHHHHHHHH
Q 004812 319 AMLGQLENSLMCYTT 333 (729)
Q Consensus 319 ~~~g~~~~A~~~~~~ 333 (729)
...|++.+|..+|+.
T Consensus 110 E~~g~~~~A~~iy~~ 124 (125)
T smart00777 110 EAAGRYKKADEVYQL 124 (125)
T ss_pred HHcCCHHHHHHHHHc
Confidence 999999999999874
No 469
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=55.78 E-value=2.3e+02 Score=28.40 Aligned_cols=186 Identities=12% Similarity=-0.063 Sum_probs=96.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004812 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (729)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (729)
.-.-.|+....++..|...+.-|. |..|-.++-.-..+. ..++++...++...-..-.-..+|+.|.+-+.+.-
T Consensus 121 ~ynf~~e~i~~lykyakfqyeCGN-Y~gAs~yLY~~r~l~-----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 121 HYNFTPERIETLYKYAKFQYECGN-YSGASDYLYFYRALV-----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccC-cccHHHHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344568889999999999999995 999988755444332 33444344444333333455678999999888876
Q ss_pred ccchhhcccc-chHHHHHHHHHHH--HHHHH-cCCHHHHHHHH------HHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004812 293 EIPVIEEGQE-HALAKFAGHMQLG--DTYAM-LGQLENSLMCY------TTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (729)
Q Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~la--~~~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (729)
+......-.. -....-.+|..-- .+++. -+--+.-++.| -.|++. ..+..+..|+.+...
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvt 264 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVT 264 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhc
Confidence 6532111111 0000111111110 11111 11122222221 122222 234456666666554
Q ss_pred h-cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004812 363 A-LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 363 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
. .....+++-+-+.+....-.... + ....-.+.+-.-+++.|...++++...
T Consensus 265 nk~~rr~~lkdlvkVIqqE~ysYkD--P-----iteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 265 NKRRRRNRLKDLVKVIQQESYSYKD--P-----ITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred chHhhHHHHHHHHHHHHHhccccCC--c-----HHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4 56666777777776654333211 1 222334455566888888887776543
No 470
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=55.27 E-value=28 Score=36.24 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHc-CChHHHHHHHHHhcccchh---hccccchHHHHHHHHHHHHHHHHcCCHHHHH--------HHH
Q 004812 264 LVMCLHVIAAIYCSL-GQYNEAIPVLEQSIEIPVI---EEGQEHALAKFAGHMQLGDTYAMLGQLENSL--------MCY 331 (729)
Q Consensus 264 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--------~~~ 331 (729)
...++..+|..|... .+.-.|..++.++++.... .....++..- .++.-|...-+..+-+ .+-
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p-----~~ay~~~re~~~~~elE~lv~D~d~~R 318 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEP-----VLAYGYGREVNNREELEELVEDPDEMR 318 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCc-----hhhhhhhhhcCCHHHHHHHhcChHHHH
Confidence 355666677776543 3466777888877766422 0001111100 1111111111111111 122
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004812 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403 (729)
Q Consensus 332 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~ 403 (729)
-+++-+.+.++|+.+|+........|-+|...|+++..++++.-|+.+..++..+-++..+..+...+.++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356667788899999998877778899999999999999999999999999998888877777777776654
No 471
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.09 E-value=91 Score=23.63 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
..|.-+...|++++|+.+|.++++.+...+.
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3445556689999999999999999877654
No 472
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.99 E-value=20 Score=35.95 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=72.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCC-------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 397 LMGLICETKGDHEAALEHLVLASMTMIAND-------------QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
..+.-.+..++++.|..-|.+++....... ........+.+++.+-...+.+..|+.....++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 345566777888888888877765544110 11122344566778888888888888777766663
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+....+++..+..+....++++|++.++.+...
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 6777889999999999999999999999998877
No 473
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.73 E-value=73 Score=24.48 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
..+...|..+-..|+.++|+.+|++++........
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 34444555556668888899999988888776533
No 474
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.73 E-value=95 Score=23.49 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHH
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEK 687 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~ 687 (729)
...|.-....|++++|+.+|.++++.+..... ..+|.....+
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~ 52 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESI 52 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 33445566789999999999999998877653 3344443333
No 475
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=53.17 E-value=2.9e+02 Score=28.83 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhcCC----C----CCChHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHhC
Q 004812 491 RESKSYCENALRIYEKPV----P----GVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 491 ~~A~~~~~~al~~~~~~~----~----~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~ 550 (729)
..|+.+|+..+..+.... + .+.......+++.+|++|.+. +.+..++.+|+.++..+...
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~ 342 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKH 342 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788888888766421 1 112233567888999998875 34556666666666666554
No 476
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.83 E-value=72 Score=35.52 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhC
Q 004812 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY---MLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
...+..++-..|....+|+.-+++.+..-.+ |+...... ...+.+..+.++. +-|+-++|+...-.+++. .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve-~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~---eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVE-THNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK---EG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhc-cCceEEEeeehhcccCCCccHHHHHHHHHHHHHh---cC
Confidence 4556667777888888888777766544333 21100000 0011111222222 346777777766665553 22
Q ss_pred CCCChHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQ---------RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-LDDAI 662 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~ 662 (729)
... ...+...|++|.. .+..+.|+++|++|.+. .|... .=.++|.++...|+ |+...
T Consensus 275 ~va----pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--------eP~~~-sGIN~atLL~aaG~~Fens~ 341 (1226)
T KOG4279|consen 275 PVA----PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--------EPLEY-SGINLATLLRAAGEHFENSL 341 (1226)
T ss_pred CCC----CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--------Cchhh-ccccHHHHHHHhhhhccchH
Confidence 222 2345555666543 35567899999999887 45432 34567777777774 44444
Q ss_pred HHHHHHHHHHHHHcC-CCChhHHHHHHHHHHHH---HHhCCHhHHHHHHHHHHHhhccc
Q 004812 663 EILEFVVGIREEKLG-TANPDVDDEKRRLAELL---KEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 663 ~~~~~al~~~~~~~~-~~~p~~~~~~~~La~~~---~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++-.-.+.+ ..++| ...-.....|...|..+ ...+++.+|+ +.-+..+++.|.
T Consensus 342 Elq~IgmkL-n~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kai-qAae~mfKLk~P 398 (1226)
T KOG4279|consen 342 ELQQIGMKL-NSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAI-QAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHH-HHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHH-HHHHHHhccCCc
Confidence 444433333 22333 22222233333333322 3457899999 888999999886
No 477
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.55 E-value=1.1e+02 Score=34.28 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhcC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR---TGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 507 (729)
...+-.++-..|....+|+.-++..+..-.+-.... -.....+.+..+.++.+ -|+-++|+...-.+++.-
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~---vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e--- 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLK---VVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE--- 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhh---hhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc---
Confidence 345566777788888899888777665544310000 00111122223333333 466777777766666642
Q ss_pred CCCCChHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-HHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYES---------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDS 577 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A 577 (729)
+...| ..+...|++|.. .+..+.|+++|++|.+..|... .=.+++.++...|+ |+..
T Consensus 274 --g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~--------sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 274 --GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY--------SGINLATLLRAAGEHFENS 340 (1226)
T ss_pred --CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh--------ccccHHHHHHHhhhhccch
Confidence 22222 234555666543 4567789999999988766441 11355666666663 3444
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHH
Q 004812 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLA---CVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~ 629 (729)
.++-.-++.+-.-++.+........|...|.. -...++|.+|+...+...++
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 44333333332222222211111112222211 12346777777766666655
No 478
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.60 E-value=2.5e+02 Score=27.65 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc-----hHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-----RVGETCRYL-AEAHVQALQFSEAQKFCQMALDIHKDN 383 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (729)
.+-.-++.+.-..+|..|+..++++++..........+ +..-.+..+ .+++..+++|.+++.+..+....-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34555666777789999999999999886331111111 111222223 246778899999998876665544433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGDTYLSLSRYDEAGFAYQ 456 (729)
Q Consensus 384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (729)
. +.++..-...|.+.+++...++.-..-+.. ..+..-+. -..+-..+-.++.=+|.+.+|.+...
T Consensus 117 P-------pkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 P-------PKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 2 345666677888999998888776544431 11111121 11222334455566899999988763
No 479
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.46 E-value=38 Score=20.28 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
+|..+..++.+.|+++.|..+|....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788899999999999999998765
No 480
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=50.71 E-value=39 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999999987764
No 481
>PRK12798 chemotaxis protein; Reviewed
Probab=50.20 E-value=3.3e+02 Score=28.60 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (729)
..+|..++..-...|+.+-|...-.+++.+.
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 3455555555555555555555555555554
No 482
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.96 E-value=91 Score=31.64 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhCCCC
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS-KLRAIGERK 595 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~ 595 (729)
......++......++....+....+|+.......+ .+..+...+-.+....++|.-+..++..-+. +.......+
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~---qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~ 178 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG---QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLD 178 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc---chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCC
Confidence 334555666666777777777778888777655433 3344555666777788888877776654332 222222223
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
+..+...+++-|.+|...++++.|+.+|+.++.+
T Consensus 179 ~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 179 PKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3333444555578888999999999999999875
No 483
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=49.42 E-value=1.2e+02 Score=29.68 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
.......++=..+...++++.|..+.++.+.+ .|..+.-+...|.+|.++|.+.-|+..+...++.+.
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34455666777888999999999999999998 677777888899999999999999999999888743
No 484
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.36 E-value=88 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
.-+++.+...+|+...+.-++. .|........|-.+|+-.|+|++|...++-+-.
T Consensus 9 seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3455667788888888777766 777777778888888889999998877765543
No 485
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.62 E-value=4.2e+02 Score=31.06 Aligned_cols=182 Identities=16% Similarity=0.082 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCC--
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSP-- 386 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~-- 386 (729)
+..|+..|...|++++|++.+.+...-.. ..+......+-.+-..+...+.- +-..++-.-.+...+..+-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 56788888889999999888888766321 01233333344444444444433 44444443333333322111
Q ss_pred --CCHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--------cCCHHHHHHH-
Q 004812 387 --ASLEEAA-DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS--------LSRYDEAGFA- 454 (729)
Q Consensus 387 --~~~~~a~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~- 454 (729)
.....+. .-...-.-|......+-++.|++.++......+. ..+..++..|.. .++-+++.+.
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-----~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-----LLHTVLLKLYLEKVLEQASTDGKGEEAPETT 657 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-----HHHHHHHHHHHHHHhhccCchhccccchhhh
Confidence 0000000 0111222345566777788888877654332222 112222222221 2223344444
Q ss_pred -HHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 455 -YQKALTAFKTNKGENHP-------AVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 455 -~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
.++.....+.. ..-+| .....|...+.++.++|+.++|+..|-..+.
T Consensus 658 ~rekl~~~l~~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 658 VREKLLDFLESS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhhh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33333322211 11111 1245667778888888888888888766554
No 486
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.26 E-value=2.9e+02 Score=27.19 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
...|++=+|-..|+..+...-... ...........-+.+.++.++..-|..+.-..++.++. ....+...-.-++
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~K--~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek---a~~ad~~~~~anl 91 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQK--AHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK---AEVADSLLKVANL 91 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH---HHhhHhHHHHHHH
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004812 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
+.+....+.-+..+..+-+..--+...+|...-..+..+..||..+...++..+|. .+|
T Consensus 92 ~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~-~HF 150 (312)
T KOG3024|consen 92 AELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEAR-RHF 150 (312)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHH-hHh
No 487
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=47.10 E-value=99 Score=27.51 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-------------------------------CCChhHHHHHHHHHHH
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECG-------------------------------PYHPDTLGVYSNLAGT 651 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~~~la~~ 651 (729)
....++..+..|+.++|...+.+|...+..... .............++-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 345677788899999999999999887653110 0012233466777888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 652 YDAIGRLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
....|+...|.+.++.+-.-..-.. ..-| .........+..+...|++.+|. ..|..+++
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~-~~lPL~~~~~av~~A~~ll~~~k~~eA~-~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITT-ALLPLAQTPAAVKQAAALLDEGKYYEAN-AALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEE-EEEEHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeee-eeCCHHhhHHHHHHHHHHHHCCCHHHHH-HHHHHHhc
Confidence 8999999999998886532000000 0001 11233446678889999999999 99988874
No 488
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.94 E-value=3.6e+02 Score=28.12 Aligned_cols=58 Identities=16% Similarity=-0.019 Sum_probs=39.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 004812 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYT 332 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~ 332 (729)
.+..++..++|..|...|..++..... +... .....+..+ |..++..-++++|...++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~--~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS--AVNH--TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC--hhhh--hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 455778899999999999999865311 1122 223334444 444567778899999998
No 489
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.83 E-value=3.3e+02 Score=27.35 Aligned_cols=178 Identities=12% Similarity=0.050 Sum_probs=97.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE-EIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
.|....+++.+|...+..|+|..|-.++-....+... .++ .....|..+| .-.-..+|+.|++-+.+..+...
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~-----~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSD-----PDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCC-----cchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHc
Confidence 6888899999999999999999999988777666433 233 2333344443 33446789999999988887765
Q ss_pred hCCCCCCcHHHHHHHHH----H---HHHH-cCCHHHHHHHH------HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-
Q 004812 549 DAPGQQSTVAGIEAQMG----V---MYYM-LGNYSDSYDSF------KNAISKLRAIGERKSAFFGVALNQMGLACVQR- 613 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la----~---~~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 613 (729)
...-..+ ...+.... + +++. -+--+.-++.| -.|++. ..+..+..|+.+..-.
T Consensus 199 s~~f~~~--~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 199 SKSFSTS--AQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVTNK 266 (432)
T ss_pred ccccccH--HHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhcch
Confidence 4422211 11111111 1 1111 11122222222 122221 1234555566555443
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
.....+++-+-+.++.-.-.+ .+|- ...-.|+.-.=+++.|...++++-+..
T Consensus 267 ~~rr~~lkdlvkVIqqE~ysY--kDPi-----teFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESYSY--KDPI-----TEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HhhHHHHHHHHHHHHHhcccc--CCcH-----HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 455566666666655421111 1332 223345555668999998888876653
No 490
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=45.78 E-value=1.3e+02 Score=22.68 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
..|.-....|++++|+.+|..+++.+.....
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444556679999999999999999877663
No 491
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.58 E-value=48 Score=19.42 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 614 YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
|+++.|...|++++.. .|....++...+..
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHH
Confidence 5678899999999988 56666666655543
No 492
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.14 E-value=3.1e+02 Score=26.98 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-C---ChHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG-V---PPEEIASGLTDVS-SIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~---~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
..+-.-+..+.-..+|..|+..++++++........ . ...+.-..+.-+| .++..++++.+++.+.-+-.+.-++
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344555677777889999999999999987332101 1 1112222233333 4567789998887765544433333
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-SAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
.+ +.++-.-..+|.+.+++....+.-..-+.- -.+.. +.+-..+-..+-.++.=.|.+++|.++..
T Consensus 116 lP------pkIleLCILLysKv~Ep~amlev~~~WL~~---p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 116 LP------PKILELCILLYSKVQEPAAMLEVASAWLQD---PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred CC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC---cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 22 344444456788889988776665544432 11111 11222333444555566799999988763
No 493
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.94 E-value=2.1e+02 Score=27.04 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=48.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 315 GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 315 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
..-+...+...+|+...+.-++. .|........+-.+++-.|+|++|..-++-+-.+.++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456778888998888877666 677777888888899999999999999888877766543
No 494
>COG3899 Predicted ATPase [General function prediction only]
Probab=40.90 E-value=6.8e+02 Score=29.64 Aligned_cols=260 Identities=16% Similarity=0.033 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.+..++..|+.....-. +.+|+.++..++.+.......+...-....+......-+..+++..+..++...+..
T Consensus 438 l~~l~l~Ag~ka~~~~a-~~~A~~~~~~~~~ll~~~~~~~~~~l~l~~~~~~~~~a~~~~~~~~~e~~~~~~~~~----- 511 (849)
T COG3899 438 LAELNLLAGRKAKLRSA-YSAAISYLERGLSLLLADAWQNQYLLALMLHRLAAENAYLRGQFELSESLIEVVLIC----- 511 (849)
T ss_pred HHHHHHhcchhhhhchh-hHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHH-----
Confidence 34455566666666655 899999999999887654322211111111222222233445566665555533322
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH--HHHHHhcCHHHHHHHHHHHH
Q 004812 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA--EAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al 377 (729)
..........+......+..+++..+|+..-..++......+... + ..+....+ ......++ ......+
T Consensus 512 -~~~~~~~~~~~~~~i~~~~~q~~~~~ai~~~~~~l~~l~~~~~~~-~--~~~~~~~~~~~~~~~~~~-----~~~~~~~ 582 (849)
T COG3899 512 -AASNLDGAKVYELVIQAYTAQKQRLEAIALGQNALQLLGIAFPEK-P--CLAELNQAGEEINQLLGD-----RAIEELL 582 (849)
T ss_pred -hhhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccc-c--chHHHHHHHHHHHHhhhh-----hhHHHHH
Confidence 112223344455555566677777777777555554433322111 1 11111111 11111111 0011111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH----HHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHH
Q 004812 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV----LASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAG 452 (729)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 452 (729)
..+...++... ....+......+-+..+...+. .........++......++...+.+... .+++..+.
T Consensus 583 -~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gn~~~s~~~~~~~~~~~~~~~~~~~~~y 656 (849)
T COG3899 583 -NLPAMTDPDKL-----AALRILLNLILALFLTAPNLFPLIILTIVTLSLKYGNSSESAAAYVRYGDILNSFLGDFEKAY 656 (849)
T ss_pred -hChhccchhHH-----HHHHHHHHhhHHHHhhchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111111111 1111111111111222222222 2223333445555556666666655544 48888888
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL--RESKSYCENALRI 503 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 503 (729)
.+...++....... .......++..+......... .+++..++..+..
T Consensus 657 ~~~~~a~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (849)
T COG3899 657 EFGKLALQLLEKFN---AKELKSKWYLEAGVFILHWNDHLKETISLFKEGLVA 706 (849)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 88888888765543 333444455555555444444 4455555555444
No 495
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=40.18 E-value=1.6e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=28.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHc-CCCChhHHHHHH
Q 004812 648 LAGTYDAIGRLDDAIEILEFVVGIREEKL-GTANPDVDDEKR 688 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~p~~~~~~~ 688 (729)
.|.-....|++++|+.+|..+++.+...+ ...+|.....+.
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr 53 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALR 53 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34445677999999999999999887755 344555444443
No 496
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=40.00 E-value=6.7e+02 Score=29.27 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVG-IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.+-..+...|+-..+...++ +.. ....++++... ..+|..|...+...+++++|. ..|+.+++.+.
T Consensus 983 ~l~k~l~s~Gke~a~r~lld-l~ri~~~~vlrt~re--Q~aYdlL~~~~v~~~d~e~Ak-~lla~liak~~ 1049 (1088)
T KOG4318|consen 983 CLRKLLLSDGKEVAQRMLLD-LLRICDTRVLRTTRE--QKAYDLLSEYGVELRDYEEAK-NLLAALIAKHS 1049 (1088)
T ss_pred HHHHHhhhcccHHHHHHHHH-HHHHHHHHhhhhHHH--HHHHHHHHHHHhhcCchHHHH-HHHHHHHhhcc
Confidence 33444556677666666555 444 23333332222 237888888888888888888 88888777653
No 497
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.46 E-value=3.7e+02 Score=26.23 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
.-+.|+.+-..++.+.|.+.. +|...-.+...+ .+..+-++++...+ .+.+....+|...-.+..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYT--------VW~yRr~iL~~l~~dL~~El~~l~eI~------e~npKNYQvWHHRr~ive 123 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYT--------VWQYRRVILRHLMSDLNKELEYLDEII------EDNPKNYQVWHHRRVIVE 123 (318)
T ss_pred cCHHHHHHHHHHHHhCcccch--------HHHHHHHHHHHhHHHHHHHHHHHHHHH------HhCccchhHHHHHHHHHH
Confidence 445677777777777766542 233333333322 34556666666554 356666777887778888
Q ss_pred HcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 444 SLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 444 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
..|++. .-+++...++.. +...-.+|...-.+...-+.++.-+.+..+.++.
T Consensus 124 ~l~d~s~rELef~~~~l~~--------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDD--------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HhcCcccchHHHHHHHHhc--------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888877 667777777775 5666778888888888888899999998888876
No 498
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.36 E-value=1.7e+02 Score=25.16 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
..+|+-++-.+.+....+- ....+..+..+|.+|.+.|+..+|-+++.+|-+
T Consensus 97 v~~~kkDqLdki~~~l~kn--------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKN--------EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4455555555555554432 233455789999999999999999999998875
No 499
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=38.56 E-value=86 Score=30.19 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=52.0
Q ss_pred HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (729)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (729)
..-....|.+++..|+......++......+....+..|+...+|+-|..+|..|+.++.
T Consensus 51 s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 51 SDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred cccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 344578899999999999888888887777788888999999999999999999999864
No 500
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.34 E-value=2.8e+02 Score=32.31 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=51.1
Q ss_pred hcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 004812 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608 (729)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 608 (729)
..+++..|+-.+..++......+........-...-+..+-..|....|+.+|.+++..++...-.. .....++.++.
T Consensus 287 ee~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~--~edh~~f~i~~ 364 (960)
T KOG1938|consen 287 EEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSF--AEDHLYFTILH 364 (960)
T ss_pred cCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcch--hHHhHHHhHHH
Confidence 3455566666666666655333222221111111235566677788999999999998765322111 12234555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 004812 609 ACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~ 629 (729)
.|.-.+ .+.|-..+.+.+..
T Consensus 365 ~y~l~~-~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 365 VYLLCQ-EDDADEEFSKLIAD 384 (960)
T ss_pred hhhhhc-chhHHHHHHHHHhh
Confidence 443333 35555555555544
Done!