Query 004812
Match_columns 729
No_of_seqs 1564 out of 3103
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-37 1.9E-41 324.8 42.3 385 226-699 4-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-36 4.7E-41 321.7 37.9 378 270-727 4-383 (388)
3 2xpi_A Anaphase-promoting comp 100.0 2.6E-35 8.9E-40 330.8 35.6 461 190-728 87-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.7E-33 1.6E-37 312.4 38.5 438 219-727 82-560 (597)
5 2gw1_A Mitochondrial precursor 100.0 2.6E-31 8.8E-36 292.3 41.8 402 220-690 5-489 (514)
6 3fp2_A TPR repeat-containing p 100.0 5.6E-32 1.9E-36 299.4 36.3 421 219-717 23-494 (537)
7 2gw1_A Mitochondrial precursor 100.0 4.6E-32 1.6E-36 298.2 35.0 393 263-717 4-481 (514)
8 4g1t_A Interferon-induced prot 100.0 1.4E-30 4.7E-35 283.3 35.1 407 238-717 27-462 (472)
9 2y4t_A DNAJ homolog subfamily 100.0 1.3E-29 4.4E-34 273.8 36.4 400 209-704 14-445 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 5.8E-29 2E-33 268.7 40.0 344 307-717 25-413 (450)
11 4g1t_A Interferon-induced prot 100.0 1.4E-30 4.9E-35 283.2 27.0 386 216-672 46-460 (472)
12 3fp2_A TPR repeat-containing p 100.0 1.4E-29 4.8E-34 280.2 35.3 419 189-672 27-492 (537)
13 3ieg_A DNAJ homolog subfamily 100.0 5.2E-28 1.8E-32 252.3 40.6 333 308-699 3-355 (359)
14 3sf4_A G-protein-signaling mod 100.0 4E-28 1.4E-32 258.0 39.0 344 308-668 9-373 (406)
15 3sf4_A G-protein-signaling mod 100.0 1.1E-27 3.8E-32 254.6 41.8 342 347-704 6-367 (406)
16 3ieg_A DNAJ homolog subfamily 100.0 2.9E-27 9.9E-32 246.6 37.5 336 265-656 3-354 (359)
17 2xm6_A Protein corresponding t 100.0 9.6E-26 3.3E-30 245.9 44.6 390 218-716 36-469 (490)
18 4a1s_A PINS, partner of inscut 100.0 2.3E-26 7.9E-31 245.0 38.3 315 262-591 45-376 (411)
19 4a1s_A PINS, partner of inscut 100.0 3.4E-26 1.2E-30 243.8 39.2 313 347-673 45-374 (411)
20 3ro2_A PINS homolog, G-protein 100.0 6.5E-26 2.2E-30 233.8 39.1 312 265-591 5-336 (338)
21 2xm6_A Protein corresponding t 100.0 1.3E-25 4.4E-30 244.9 40.8 351 265-715 39-433 (490)
22 3ro2_A PINS homolog, G-protein 100.0 3E-25 1E-29 228.8 39.4 309 309-632 6-335 (338)
23 1fch_A Peroxisomal targeting s 100.0 7.6E-27 2.6E-31 244.7 24.6 317 273-635 33-365 (368)
24 3hym_B Cell division cycle pro 99.9 2.9E-26 9.9E-31 236.1 26.8 301 347-701 19-322 (330)
25 1fch_A Peroxisomal targeting s 99.9 2.8E-26 9.7E-31 240.4 24.3 318 359-717 34-362 (368)
26 3hym_B Cell division cycle pro 99.9 2.6E-25 9E-30 229.0 28.5 295 310-659 24-322 (330)
27 3ulq_A Response regulator aspa 99.9 1E-23 3.6E-28 222.2 39.9 350 308-677 12-374 (383)
28 4eqf_A PEX5-related protein; a 99.9 2.3E-25 7.8E-30 233.3 23.9 305 286-635 48-362 (365)
29 4eqf_A PEX5-related protein; a 99.9 3.5E-25 1.2E-29 231.9 25.0 283 393-711 66-353 (365)
30 3ulq_A Response regulator aspa 99.9 4.6E-23 1.6E-27 217.2 41.1 349 265-635 12-374 (383)
31 3q15_A PSP28, response regulat 99.9 1.4E-22 5E-27 212.9 34.7 337 317-677 21-371 (378)
32 3cv0_A Peroxisome targeting si 99.9 1.9E-23 6.7E-28 214.6 27.4 278 393-717 22-318 (327)
33 3q15_A PSP28, response regulat 99.9 6.6E-22 2.3E-26 207.8 39.7 340 225-591 16-369 (378)
34 3cv0_A Peroxisome targeting si 99.9 7.5E-23 2.6E-27 210.2 29.1 290 264-593 20-321 (327)
35 2ooe_A Cleavage stimulation fa 99.9 4.4E-22 1.5E-26 219.2 37.0 425 215-717 7-495 (530)
36 1hz4_A MALT regulatory protein 99.9 4.7E-21 1.6E-25 201.1 39.9 312 349-674 13-325 (373)
37 3nf1_A KLC 1, kinesin light ch 99.9 3.3E-22 1.1E-26 203.8 30.0 282 426-717 21-310 (311)
38 3nf1_A KLC 1, kinesin light ch 99.9 1.2E-21 4E-26 199.7 31.2 279 342-629 19-307 (311)
39 3uq3_A Heat shock protein STI1 99.9 2E-21 6.7E-26 192.1 30.1 236 430-716 3-238 (258)
40 3u4t_A TPR repeat-containing p 99.9 2.4E-22 8.1E-27 200.7 22.2 263 351-656 4-269 (272)
41 2h6f_A Protein farnesyltransfe 99.9 2E-22 6.9E-27 209.3 21.9 241 427-717 92-351 (382)
42 3u4t_A TPR repeat-containing p 99.9 9.6E-23 3.3E-27 203.6 18.4 247 433-717 4-253 (272)
43 2h6f_A Protein farnesyltransfe 99.9 4.4E-22 1.5E-26 206.8 23.7 254 389-697 94-366 (382)
44 3uq3_A Heat shock protein STI1 99.9 7.7E-21 2.6E-25 187.8 30.3 254 347-651 2-256 (258)
45 1hz4_A MALT regulatory protein 99.9 4E-20 1.4E-24 193.9 37.5 313 264-592 13-327 (373)
46 3e4b_A ALGK; tetratricopeptide 99.9 4.2E-22 1.4E-26 213.7 22.3 385 225-717 7-424 (452)
47 3edt_B KLC 2, kinesin light ch 99.9 4.3E-21 1.5E-25 192.4 25.8 268 319-587 12-281 (283)
48 2pl2_A Hypothetical conserved 99.9 1.7E-21 5.9E-26 187.0 20.3 197 432-669 5-212 (217)
49 2ooe_A Cleavage stimulation fa 99.9 8.6E-20 3E-24 200.9 36.1 387 262-717 10-457 (530)
50 3e4b_A ALGK; tetratricopeptide 99.9 8.1E-22 2.8E-26 211.5 19.2 353 269-717 7-390 (452)
51 3edt_B KLC 2, kinesin light ch 99.9 2.3E-20 8E-25 187.0 27.5 270 442-715 11-282 (283)
52 2pl2_A Hypothetical conserved 99.9 3.1E-21 1.1E-25 185.2 18.9 200 471-712 2-212 (217)
53 3mkr_A Coatomer subunit epsilo 99.9 1E-19 3.5E-24 182.8 26.1 278 358-704 7-285 (291)
54 3mkr_A Coatomer subunit epsilo 99.9 3.7E-19 1.3E-23 178.7 28.7 260 400-717 7-267 (291)
55 1qqe_A Vesicular transport pro 99.8 2.7E-19 9.2E-24 180.3 25.6 250 365-652 32-284 (292)
56 1xi4_A Clathrin heavy chain; a 99.8 1.1E-17 3.8E-22 189.6 39.9 360 226-704 990-1375(1630)
57 1ouv_A Conserved hypothetical 99.8 1.1E-18 3.9E-23 174.1 27.7 226 431-717 5-254 (273)
58 1ouv_A Conserved hypothetical 99.8 1.4E-18 4.8E-23 173.4 27.3 226 217-503 2-251 (273)
59 1qqe_A Vesicular transport pro 99.8 4E-19 1.4E-23 179.1 23.2 250 407-694 32-284 (292)
60 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-19 4.7E-24 177.1 19.3 221 430-698 21-241 (243)
61 3vtx_A MAMA; tetratricopeptide 99.8 3.6E-19 1.2E-23 166.0 20.7 178 517-726 5-182 (184)
62 1xi4_A Clathrin heavy chain; a 99.8 6.8E-17 2.3E-21 183.3 40.1 352 228-698 1056-1415(1630)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.7E-19 1.3E-23 177.6 19.7 258 399-708 12-269 (275)
64 2ho1_A Type 4 fimbrial biogene 99.8 2.3E-18 8E-23 169.5 24.8 209 470-717 32-241 (252)
65 1xnf_A Lipoprotein NLPI; TPR, 99.8 9E-19 3.1E-23 174.8 21.6 259 271-581 11-269 (275)
66 2vq2_A PILW, putative fimbrial 99.8 5.8E-18 2E-22 163.1 25.7 209 470-717 4-214 (225)
67 2q7f_A YRRB protein; TPR, prot 99.8 4.3E-19 1.5E-23 173.5 17.6 206 471-717 20-225 (243)
68 2ho1_A Type 4 fimbrial biogene 99.8 5.3E-18 1.8E-22 166.9 25.2 203 431-671 36-238 (252)
69 2vq2_A PILW, putative fimbrial 99.8 1.9E-17 6.4E-22 159.6 28.1 207 427-671 3-211 (225)
70 2ifu_A Gamma-SNAP; membrane fu 99.8 1.6E-17 5.6E-22 168.6 28.4 245 405-663 4-253 (307)
71 4abn_A Tetratricopeptide repea 99.8 1.5E-18 5E-23 187.3 21.5 204 427-668 97-318 (474)
72 3vtx_A MAMA; tetratricopeptide 99.8 4.1E-18 1.4E-22 158.8 21.8 167 473-671 4-170 (184)
73 4abn_A Tetratricopeptide repea 99.8 1.1E-18 3.7E-23 188.4 19.8 217 451-710 80-317 (474)
74 4gyw_A UDP-N-acetylglucosamine 99.8 1.8E-18 6.2E-23 193.6 21.1 173 513-717 5-177 (723)
75 2ifu_A Gamma-SNAP; membrane fu 99.8 2E-17 6.7E-22 168.0 26.2 247 363-621 4-253 (307)
76 4gyw_A UDP-N-acetylglucosamine 99.8 8.3E-18 2.8E-22 188.3 21.5 174 470-675 5-178 (723)
77 3qky_A Outer membrane assembly 99.8 9.4E-17 3.2E-21 158.9 24.0 224 428-704 11-252 (261)
78 4i17_A Hypothetical protein; T 99.7 2.4E-17 8.1E-22 159.6 17.7 188 433-653 8-225 (228)
79 2ond_A Cleavage stimulation fa 99.7 2.5E-16 8.4E-21 160.0 23.7 224 449-717 33-273 (308)
80 4i17_A Hypothetical protein; T 99.7 1.1E-16 3.8E-21 154.8 18.5 187 474-695 7-225 (228)
81 3qky_A Outer membrane assembly 99.7 6.6E-16 2.3E-20 152.8 23.7 223 262-537 12-252 (261)
82 4b4t_Q 26S proteasome regulato 99.7 1.3E-14 4.3E-19 155.3 32.1 241 352-597 6-255 (434)
83 4e6h_A MRNA 3'-END-processing 99.7 4E-13 1.4E-17 148.5 44.0 443 209-717 54-573 (679)
84 2ond_A Cleavage stimulation fa 99.7 4.9E-15 1.7E-19 150.4 24.8 227 282-551 33-275 (308)
85 1b89_A Protein (clathrin heavy 99.7 1.3E-17 4.6E-22 170.6 5.1 335 273-717 11-360 (449)
86 3as5_A MAMA; tetratricopeptide 99.7 2.2E-15 7.6E-20 139.9 18.8 172 514-717 5-176 (186)
87 1b89_A Protein (clathrin heavy 99.7 7.7E-16 2.6E-20 157.6 15.8 379 201-704 17-408 (449)
88 3n71_A Histone lysine methyltr 99.7 3E-15 1E-19 159.3 21.0 150 564-714 315-464 (490)
89 3gw4_A Uncharacterized protein 99.7 1.4E-14 4.6E-19 137.0 23.0 194 443-651 3-196 (203)
90 3gw4_A Uncharacterized protein 99.7 1.5E-14 5.1E-19 136.8 22.7 195 360-567 2-196 (203)
91 2pzi_A Probable serine/threoni 99.6 1.5E-15 5.3E-20 171.1 17.3 200 443-675 402-602 (681)
92 2qfc_A PLCR protein; TPR, HTH, 99.6 3.1E-14 1.1E-18 143.3 25.2 198 471-675 72-270 (293)
93 4ga2_A E3 SUMO-protein ligase 99.6 8.5E-16 2.9E-20 137.4 12.0 147 522-699 2-149 (150)
94 2qfc_A PLCR protein; TPR, HTH, 99.6 1.1E-14 3.9E-19 146.5 21.4 195 394-593 77-272 (293)
95 3urz_A Uncharacterized protein 99.6 5.4E-15 1.9E-19 140.5 17.8 168 517-717 4-189 (208)
96 3u3w_A Transcriptional activat 99.6 1.4E-14 4.9E-19 145.8 21.8 194 393-594 76-273 (293)
97 3u3w_A Transcriptional activat 99.6 2.3E-14 7.7E-19 144.4 23.2 196 473-675 74-270 (293)
98 3urz_A Uncharacterized protein 99.6 7.9E-15 2.7E-19 139.3 18.0 164 433-629 5-186 (208)
99 3as5_A MAMA; tetratricopeptide 99.6 1.1E-14 3.9E-19 135.0 18.5 171 470-672 4-174 (186)
100 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.8E-14 6.1E-19 138.8 20.4 181 517-717 4-216 (225)
101 4b4t_Q 26S proteasome regulato 99.6 1E-13 3.5E-18 148.2 27.5 235 311-551 7-250 (434)
102 2pzi_A Probable serine/threoni 99.6 6.2E-15 2.1E-19 166.2 18.0 201 319-551 402-603 (681)
103 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.8E-13 9.7E-18 130.3 26.6 191 433-671 5-213 (225)
104 4ga2_A E3 SUMO-protein ligase 99.6 2.3E-15 7.9E-20 134.6 10.3 147 479-657 2-149 (150)
105 3dra_A Protein farnesyltransfe 99.6 2.5E-13 8.6E-18 135.0 22.6 228 444-717 45-291 (306)
106 3ro3_A PINS homolog, G-protein 99.6 2E-13 6.9E-18 123.4 20.2 158 427-590 4-161 (164)
107 3n71_A Histone lysine methyltr 99.6 1.3E-13 4.4E-18 146.7 21.3 152 520-671 312-464 (490)
108 3ro3_A PINS homolog, G-protein 99.6 4.7E-13 1.6E-17 120.9 21.2 157 389-550 6-162 (164)
109 4gco_A Protein STI-1; structur 99.5 6.7E-14 2.3E-18 120.6 12.7 112 597-725 10-123 (126)
110 2r5s_A Uncharacterized protein 99.5 1.2E-13 4.1E-18 127.3 14.8 170 217-420 2-172 (176)
111 4gco_A Protein STI-1; structur 99.5 1.9E-13 6.6E-18 117.7 14.9 117 554-694 9-125 (126)
112 4e6h_A MRNA 3'-END-processing 99.5 7.2E-11 2.5E-15 130.6 37.4 411 240-716 50-535 (679)
113 3dra_A Protein farnesyltransfe 99.5 2E-12 6.7E-17 128.6 22.6 237 406-692 47-301 (306)
114 3qou_A Protein YBBN; thioredox 99.5 3.5E-13 1.2E-17 134.9 16.4 167 516-714 116-284 (287)
115 3qww_A SET and MYND domain-con 99.5 6.1E-13 2.1E-17 139.2 18.6 122 570-691 310-431 (433)
116 2r5s_A Uncharacterized protein 99.5 1.3E-13 4.5E-18 127.0 12.0 163 518-713 7-172 (176)
117 3qou_A Protein YBBN; thioredox 99.5 7E-13 2.4E-17 132.7 18.2 170 218-420 114-283 (287)
118 4f3v_A ESX-1 secretion system 99.5 3.2E-13 1.1E-17 130.8 14.6 209 476-717 9-240 (282)
119 3gyz_A Chaperone protein IPGC; 99.5 9.3E-14 3.2E-18 123.4 9.3 104 597-717 33-136 (151)
120 3qwp_A SET and MYND domain-con 99.5 8.2E-13 2.8E-17 138.7 17.7 131 567-697 296-426 (429)
121 2vsy_A XCC0866; transferase, g 99.5 6.3E-13 2.2E-17 147.3 17.6 156 530-717 2-160 (568)
122 3rjv_A Putative SEL1 repeat pr 99.5 2.1E-12 7.3E-17 122.7 18.6 177 449-671 3-197 (212)
123 4f3v_A ESX-1 secretion system 99.5 2.2E-13 7.4E-18 132.0 11.3 219 435-691 10-248 (282)
124 3rjv_A Putative SEL1 repeat pr 99.5 1.1E-12 3.7E-17 124.8 16.2 178 491-717 3-200 (212)
125 3dss_A Geranylgeranyl transfer 99.4 2.3E-11 7.9E-16 121.4 24.2 226 443-717 40-307 (331)
126 2vsy_A XCC0866; transferase, g 99.4 7.4E-13 2.5E-17 146.7 14.9 153 487-671 2-157 (568)
127 1p5q_A FKBP52, FK506-binding p 99.4 3.8E-13 1.3E-17 137.8 11.5 164 529-715 125-295 (336)
128 2fo7_A Synthetic consensus TPR 99.4 7.7E-12 2.6E-16 108.7 17.5 134 559-717 2-135 (136)
129 4gcn_A Protein STI-1; structur 99.4 4.6E-12 1.6E-16 109.3 15.3 109 599-717 7-115 (127)
130 3gyz_A Chaperone protein IPGC; 99.4 4.1E-12 1.4E-16 112.7 14.0 102 554-671 32-133 (151)
131 4gcn_A Protein STI-1; structur 99.4 6E-12 2E-16 108.6 14.4 108 471-587 5-112 (127)
132 2vgx_A Chaperone SYCD; alterna 99.4 4.9E-12 1.7E-16 112.4 12.9 127 539-693 9-135 (148)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.4 5.8E-12 2E-16 119.9 14.0 139 559-717 7-153 (213)
134 2vgx_A Chaperone SYCD; alterna 99.4 3.4E-12 1.2E-16 113.4 11.4 104 597-717 18-121 (148)
135 1p5q_A FKBP52, FK506-binding p 99.3 5.9E-12 2E-16 128.9 14.1 163 201-381 127-296 (336)
136 2hr2_A Hypothetical protein; a 99.3 1.7E-11 6E-16 107.1 14.4 116 600-717 11-134 (159)
137 3dss_A Geranylgeranyl transfer 99.3 4.6E-10 1.6E-14 112.1 26.4 237 403-693 40-318 (331)
138 2c2l_A CHIP, carboxy terminus 99.3 1.4E-11 4.7E-16 122.8 15.5 194 432-670 4-198 (281)
139 3q7a_A Farnesyltransferase alp 99.3 5.1E-11 1.8E-15 119.4 19.5 247 430-717 52-335 (349)
140 2fo7_A Synthetic consensus TPR 99.3 4.5E-11 1.5E-15 103.8 16.8 131 433-587 2-132 (136)
141 1a17_A Serine/threonine protei 99.3 6.1E-11 2.1E-15 107.5 17.7 141 430-592 11-151 (166)
142 1a17_A Serine/threonine protei 99.3 7.5E-11 2.6E-15 106.9 18.1 136 557-717 12-149 (166)
143 3upv_A Heat shock protein STI1 99.3 5.6E-11 1.9E-15 102.3 16.1 121 558-696 4-124 (126)
144 3rkv_A Putative peptidylprolyl 99.3 2.1E-11 7.1E-16 110.4 13.7 132 556-703 9-151 (162)
145 3qww_A SET and MYND domain-con 99.3 6.2E-11 2.1E-15 124.0 19.1 122 528-649 309-431 (433)
146 2fbn_A 70 kDa peptidylprolyl i 99.3 5.6E-12 1.9E-16 118.5 10.1 168 523-713 10-185 (198)
147 3upv_A Heat shock protein STI1 99.3 6.7E-11 2.3E-15 101.8 16.1 121 430-568 2-122 (126)
148 2fbn_A 70 kDa peptidylprolyl i 99.3 7.4E-12 2.5E-16 117.7 10.8 166 478-668 8-183 (198)
149 2c2l_A CHIP, carboxy terminus 99.3 4E-12 1.4E-16 126.6 9.5 195 265-503 4-199 (281)
150 2hr2_A Hypothetical protein; a 99.3 8.6E-11 2.9E-15 102.7 16.5 128 431-560 10-145 (159)
151 3qwp_A SET and MYND domain-con 99.3 5.1E-11 1.7E-15 125.1 17.5 130 526-655 296-426 (429)
152 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.9E-12 1.3E-16 136.1 8.7 161 529-712 246-413 (457)
153 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.7E-11 1.2E-15 114.3 14.6 142 391-549 5-153 (213)
154 2xcb_A PCRH, regulatory protei 99.3 6.1E-11 2.1E-15 104.6 14.2 104 597-717 15-118 (142)
155 3sz7_A HSC70 cochaperone (SGT) 99.3 6.9E-11 2.4E-15 107.2 14.8 103 598-717 9-111 (164)
156 1hxi_A PEX5, peroxisome target 99.3 3.5E-11 1.2E-15 102.7 12.0 99 602-717 19-117 (121)
157 2lni_A Stress-induced-phosphop 99.3 1.1E-10 3.7E-15 101.3 15.0 122 554-699 12-133 (133)
158 3q7a_A Farnesyltransferase alp 99.3 7.5E-10 2.6E-14 111.0 22.7 256 392-692 54-345 (349)
159 2xcb_A PCRH, regulatory protei 99.2 1.7E-10 6E-15 101.6 15.3 108 426-550 12-119 (142)
160 2vyi_A SGTA protein; chaperone 99.2 2.5E-10 8.4E-15 98.5 15.9 121 556-700 10-130 (131)
161 2e2e_A Formate-dependent nitri 99.2 3E-11 1E-15 111.2 10.3 125 568-717 20-147 (177)
162 3sz7_A HSC70 cochaperone (SGT) 99.2 1.6E-10 5.3E-15 104.8 14.8 108 426-550 5-112 (164)
163 3rkv_A Putative peptidylprolyl 99.2 2E-10 6.8E-15 103.9 15.0 126 390-532 9-147 (162)
164 2vyi_A SGTA protein; chaperone 99.2 3.5E-10 1.2E-14 97.5 15.7 125 512-659 7-131 (131)
165 2lni_A Stress-induced-phosphop 99.2 1.7E-10 5.7E-15 100.0 13.0 122 428-573 12-133 (133)
166 3q49_B STIP1 homology and U bo 99.2 1.9E-10 6.4E-15 100.5 13.0 102 599-717 8-109 (137)
167 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 8.4E-11 2.9E-15 125.8 12.2 161 200-378 247-414 (457)
168 1na0_A Designed protein CTPR3; 99.2 1E-09 3.4E-14 93.7 16.7 118 557-698 8-125 (125)
169 1wao_1 Serine/threonine protei 99.2 7.7E-12 2.6E-16 134.3 3.8 177 515-714 4-197 (477)
170 2e2e_A Formate-dependent nitri 99.2 1.7E-10 5.7E-15 106.1 11.7 122 527-671 20-144 (177)
171 3q49_B STIP1 homology and U bo 99.1 5.4E-10 1.8E-14 97.6 13.7 101 557-673 8-108 (137)
172 3mv2_B Coatomer subunit epsilo 99.1 2E-09 6.9E-14 105.6 19.0 257 400-717 21-285 (310)
173 1ihg_A Cyclophilin 40; ppiase 99.1 2.7E-10 9.3E-15 117.8 13.6 130 559-704 224-361 (370)
174 1hxi_A PEX5, peroxisome target 99.1 5E-10 1.7E-14 95.4 11.9 100 434-550 19-118 (121)
175 3mv2_B Coatomer subunit epsilo 99.1 2.4E-09 8.1E-14 105.1 17.7 263 359-684 22-290 (310)
176 2xev_A YBGF; tetratricopeptide 99.1 2.2E-09 7.4E-14 92.5 15.7 100 560-672 4-106 (129)
177 1elw_A TPR1-domain of HOP; HOP 99.1 1.9E-09 6.4E-14 90.9 14.9 113 558-694 4-116 (118)
178 1na0_A Designed protein CTPR3; 99.1 2.1E-09 7.2E-14 91.6 15.4 118 431-572 8-125 (125)
179 1elw_A TPR1-domain of HOP; HOP 99.1 1.6E-09 5.6E-14 91.3 14.1 101 600-717 4-104 (118)
180 2if4_A ATFKBP42; FKBP-like, al 99.1 1.6E-10 5.6E-15 118.2 9.0 142 559-717 180-331 (338)
181 1ihg_A Cyclophilin 40; ppiase 99.1 1.2E-09 4.2E-14 112.9 15.6 130 393-539 224-363 (370)
182 2xev_A YBGF; tetratricopeptide 99.1 8.3E-10 2.9E-14 95.2 12.1 105 602-717 4-108 (129)
183 1dce_A Protein (RAB geranylger 99.1 1.7E-10 5.9E-15 125.9 9.4 191 486-717 40-270 (567)
184 1wao_1 Serine/threonine protei 99.1 3.1E-11 1.1E-15 129.6 2.9 134 559-717 7-153 (477)
185 2uy1_A Cleavage stimulation fa 99.1 5.5E-08 1.9E-12 104.4 27.7 369 237-713 10-412 (493)
186 1elr_A TPR2A-domain of HOP; HO 99.0 2.7E-09 9.4E-14 91.8 14.0 108 431-548 3-110 (131)
187 2dba_A Smooth muscle cell asso 99.0 2.4E-09 8.2E-14 94.6 13.5 119 556-695 26-144 (148)
188 1elr_A TPR2A-domain of HOP; HO 99.0 3E-09 1E-13 91.6 13.7 109 599-717 3-111 (131)
189 2kck_A TPR repeat; tetratricop 99.0 8.2E-10 2.8E-14 92.2 9.1 100 601-717 7-109 (112)
190 2dba_A Smooth muscle cell asso 99.0 2.9E-09 9.9E-14 94.1 12.9 102 599-717 27-131 (148)
191 1dce_A Protein (RAB geranylger 99.0 3.2E-09 1.1E-13 115.9 15.7 177 444-660 40-244 (567)
192 1zu2_A Mitochondrial import re 99.0 8.7E-10 3E-14 96.1 7.3 89 612-717 14-123 (158)
193 3k9i_A BH0479 protein; putativ 99.0 1.4E-09 4.6E-14 92.1 8.3 92 612-717 2-93 (117)
194 2if4_A ATFKBP42; FKBP-like, al 99.0 1.1E-09 3.6E-14 112.1 9.0 98 475-588 231-329 (338)
195 3k9i_A BH0479 protein; putativ 98.9 2.4E-09 8.2E-14 90.6 9.3 90 570-672 2-91 (117)
196 2kck_A TPR repeat; tetratricop 98.9 2E-09 6.7E-14 89.9 5.9 102 432-548 6-108 (112)
197 1zu2_A Mitochondrial import re 98.8 7.4E-09 2.5E-13 90.2 8.7 91 443-550 13-124 (158)
198 1na3_A Designed protein CTPR2; 98.8 4.2E-08 1.5E-12 78.2 12.2 85 598-698 7-91 (91)
199 2uy1_A Cleavage stimulation fa 98.8 1.5E-06 5.1E-11 93.3 27.3 343 277-711 6-380 (493)
200 2l6j_A TPR repeat-containing p 98.8 1.5E-08 5E-13 84.5 8.1 93 600-709 4-102 (111)
201 2kat_A Uncharacterized protein 98.7 6.1E-08 2.1E-12 81.4 9.7 83 618-717 3-85 (115)
202 2kat_A Uncharacterized protein 98.7 1.4E-07 4.6E-12 79.3 11.7 87 282-385 2-88 (115)
203 1na3_A Designed protein CTPR2; 98.7 2.2E-07 7.6E-12 73.9 11.4 87 428-531 5-91 (91)
204 2l6j_A TPR repeat-containing p 98.6 1.7E-08 5.9E-13 84.1 3.9 99 432-541 4-102 (111)
205 3ma5_A Tetratricopeptide repea 98.6 3.5E-07 1.2E-11 74.5 10.1 87 599-699 6-92 (100)
206 1klx_A Cysteine rich protein B 98.6 7E-07 2.4E-11 77.6 12.6 110 531-671 9-126 (138)
207 2kc7_A BFR218_protein; tetratr 98.6 1.3E-07 4.5E-12 76.8 7.5 89 604-717 4-93 (99)
208 3ma5_A Tetratricopeptide repea 98.5 2E-07 6.7E-12 76.0 8.3 71 638-717 3-73 (100)
209 1klx_A Cysteine rich protein B 98.4 1.6E-06 5.4E-11 75.3 11.8 112 572-716 9-128 (138)
210 2kc7_A BFR218_protein; tetratr 98.4 1.2E-06 4.1E-11 71.0 9.2 90 436-550 4-94 (99)
211 3txn_A 26S proteasome regulato 98.3 0.00073 2.5E-08 68.7 29.4 214 434-658 21-236 (394)
212 3u64_A Protein TP_0956; tetrat 98.2 1.1E-05 3.8E-10 76.9 13.1 85 616-717 179-272 (301)
213 3txn_A 26S proteasome regulato 98.2 0.00048 1.7E-08 70.0 24.7 212 393-615 20-235 (394)
214 3ly7_A Transcriptional activat 98.2 3.4E-05 1.2E-09 77.1 15.4 136 562-717 200-342 (372)
215 3u64_A Protein TP_0956; tetrat 98.1 0.0001 3.5E-09 70.4 17.5 107 428-550 148-273 (301)
216 2v5f_A Prolyl 4-hydroxylase su 98.1 3E-05 1E-09 63.2 12.2 82 559-649 6-87 (104)
217 2v5f_A Prolyl 4-hydroxylase su 98.1 4.2E-05 1.4E-09 62.4 12.3 82 392-481 5-87 (104)
218 3ly7_A Transcriptional activat 98.1 0.00012 4E-09 73.2 17.3 122 365-503 214-339 (372)
219 3bee_A Putative YFRE protein; 98.0 2E-05 6.8E-10 62.5 8.8 71 638-717 2-75 (93)
220 3ffl_A Anaphase-promoting comp 98.0 4.5E-05 1.5E-09 65.8 11.3 130 221-360 20-165 (167)
221 4g26_A Pentatricopeptide repea 98.0 0.00024 8.1E-09 76.1 19.6 168 434-629 28-204 (501)
222 3ffl_A Anaphase-promoting comp 98.0 0.00016 5.5E-09 62.4 14.0 127 560-695 22-166 (167)
223 1pc2_A Mitochondria fission pr 98.0 4.3E-05 1.5E-09 65.7 10.4 86 616-717 14-103 (152)
224 4g26_A Pentatricopeptide repea 98.0 0.00021 7.1E-09 76.6 18.3 168 311-504 29-205 (501)
225 3bee_A Putative YFRE protein; 97.8 0.0001 3.6E-09 58.3 9.7 80 600-692 6-88 (93)
226 1pc2_A Mitochondria fission pr 97.7 0.00048 1.6E-08 59.2 12.2 74 599-688 31-109 (152)
227 4b4t_P 26S proteasome regulato 97.6 0.018 6.3E-07 60.2 25.9 218 406-632 30-250 (445)
228 4b4t_P 26S proteasome regulato 97.5 0.026 8.9E-07 59.1 24.6 220 364-593 30-253 (445)
229 1nzn_A CGI-135 protein, fissio 97.1 0.0033 1.1E-07 51.8 10.2 86 616-717 17-106 (126)
230 4h7y_A Dual specificity protei 96.8 0.0075 2.6E-07 50.8 9.7 104 559-671 14-123 (161)
231 4h7y_A Dual specificity protei 96.7 0.015 5.3E-07 48.9 10.9 107 601-717 14-126 (161)
232 1nzn_A CGI-135 protein, fissio 96.5 0.038 1.3E-06 45.5 11.4 74 600-688 35-112 (126)
233 2wpv_A GET4, UPF0363 protein Y 95.9 1.4 4.9E-05 42.9 27.1 131 406-541 27-158 (312)
234 4b4t_R RPN7, 26S proteasome re 95.7 0.066 2.3E-06 55.8 12.2 110 347-461 128-237 (429)
235 4gns_B Protein CSD3, chitin bi 95.7 3.3 0.00011 45.8 29.7 121 363-500 261-397 (754)
236 3mkq_A Coatomer beta'-subunit; 95.6 0.25 8.6E-06 56.4 17.5 46 318-376 662-707 (814)
237 3o48_A Mitochondria fission 1 95.5 0.085 2.9E-06 43.6 9.3 68 641-717 39-110 (134)
238 4b4t_R RPN7, 26S proteasome re 95.5 0.041 1.4E-06 57.3 9.4 110 471-587 128-237 (429)
239 2ff4_A Probable regulatory pro 95.4 0.28 9.4E-06 50.3 15.1 120 524-679 122-242 (388)
240 3mkq_A Coatomer beta'-subunit; 95.3 0.071 2.4E-06 61.0 11.7 76 478-585 633-708 (814)
241 1y8m_A FIS1; mitochondria, unk 95.3 0.24 8.1E-06 41.5 11.4 69 640-717 37-109 (144)
242 3o48_A Mitochondria fission 1 95.2 0.33 1.1E-05 40.1 11.7 75 599-689 39-117 (134)
243 4gns_B Protein CSD3, chitin bi 95.0 0.32 1.1E-05 53.8 14.9 123 530-668 261-397 (754)
244 4b4t_S RPN3, 26S proteasome re 94.9 0.23 8E-06 51.7 12.6 146 401-550 145-303 (523)
245 4b4t_S RPN3, 26S proteasome re 94.9 0.18 6.3E-06 52.5 11.8 144 359-505 145-301 (523)
246 3spa_A Mtrpol, DNA-directed RN 94.6 1.4 4.7E-05 50.0 18.5 105 556-671 125-230 (1134)
247 1y8m_A FIS1; mitochondria, unk 94.5 0.47 1.6E-05 39.7 11.0 65 599-671 38-106 (144)
248 3lpz_A GET4 (YOR164C homolog); 94.1 4.9 0.00017 39.4 30.3 210 433-656 56-296 (336)
249 2wpv_A GET4, UPF0363 protein Y 94.0 4.9 0.00017 39.1 20.6 174 515-714 31-217 (312)
250 2ff4_A Probable regulatory pro 93.9 1.2 4E-05 45.6 15.4 103 272-382 122-237 (388)
251 3mkq_B Coatomer subunit alpha; 93.8 2.2 7.5E-05 37.4 14.6 101 275-418 15-115 (177)
252 3lpz_A GET4 (YOR164C homolog); 93.6 5.8 0.0002 38.8 28.0 232 438-698 41-296 (336)
253 3spa_A Mtrpol, DNA-directed RN 93.6 0.74 2.5E-05 52.2 13.9 104 599-714 126-230 (1134)
254 4ady_A RPN2, 26S proteasome re 92.9 15 0.00052 41.5 43.1 188 500-712 393-587 (963)
255 4fhn_B Nucleoporin NUP120; pro 92.2 5.7 0.0002 47.0 20.0 181 520-715 845-1051(1139)
256 3mkq_B Coatomer subunit alpha; 91.9 2.2 7.5E-05 37.4 11.9 101 360-500 15-115 (177)
257 3kae_A CDC27, possible protein 90.5 7.7 0.00026 33.3 18.8 176 520-717 36-240 (242)
258 1ya0_A SMG-7 transcript varian 89.6 1.2 4.2E-05 46.7 9.7 63 600-670 152-214 (497)
259 4fhn_B Nucleoporin NUP120; pro 89.5 8 0.00027 45.7 17.8 136 218-367 839-988 (1139)
260 4b4t_O 26S proteasome regulato 88.4 18 0.00063 36.6 17.3 131 370-505 59-200 (393)
261 4ady_A RPN2, 26S proteasome re 87.6 39 0.0013 38.3 20.3 173 349-544 412-587 (963)
262 1ya0_A SMG-7 transcript varian 87.5 1.5 5E-05 46.2 8.6 63 433-503 153-215 (497)
263 4b4t_O 26S proteasome regulato 86.8 28 0.00097 35.2 17.7 110 272-381 83-200 (393)
264 1o9d_A 14-3-3-like protein C; 86.3 22 0.00074 33.3 21.7 183 475-672 9-208 (260)
265 3re2_A Predicted protein; meni 86.1 11 0.00038 36.5 12.7 74 432-508 255-330 (472)
266 1zbp_A Hypothetical protein VP 85.4 6.8 0.00023 36.8 10.9 100 609-717 6-132 (273)
267 2o8p_A 14-3-3 domain containin 84.8 23 0.00079 32.2 20.5 177 479-672 11-198 (227)
268 3esl_A Checkpoint serine/threo 84.2 10 0.00036 33.8 11.0 87 495-587 58-144 (202)
269 1o9d_A 14-3-3-like protein C; 84.1 28 0.00094 32.6 20.0 182 351-546 9-207 (260)
270 3u84_A Menin; MLL, JUND, ledgf 83.6 15 0.00053 36.3 12.6 63 451-516 298-360 (550)
271 4a5x_A MITD1, MIT domain-conta 83.0 6.5 0.00022 29.7 8.0 48 221-269 16-63 (86)
272 2o8p_A 14-3-3 domain containin 82.8 28 0.00095 31.7 19.3 182 355-547 11-198 (227)
273 3kae_A CDC27, possible protein 82.2 24 0.0008 30.4 21.0 98 395-503 36-143 (242)
274 3ubw_A 14-3-3E, 14-3-3 protein 82.2 32 0.0011 32.0 23.8 183 475-673 32-230 (261)
275 4gq4_A Menin; tumor suppressor 81.1 23 0.00078 35.2 12.8 80 432-514 262-343 (489)
276 3uzd_A 14-3-3 protein gamma; s 80.9 35 0.0012 31.6 24.8 184 476-674 6-206 (248)
277 1zbp_A Hypothetical protein VP 80.8 3.6 0.00012 38.7 7.1 58 651-717 6-63 (273)
278 2crb_A Nuclear receptor bindin 79.4 16 0.00055 27.5 8.6 41 220-261 14-54 (97)
279 1qsa_A Protein (soluble lytic 79.0 75 0.0026 34.3 26.3 128 564-713 220-347 (618)
280 1wfd_A Hypothetical protein 15 77.2 12 0.00042 28.7 8.0 49 220-269 14-62 (93)
281 2w2u_A Hypothetical P60 katani 76.2 7.1 0.00024 29.3 6.2 37 220-257 18-54 (83)
282 2npm_A 14-3-3 domain containin 75.9 52 0.0018 30.7 21.1 184 351-549 29-230 (260)
283 2v6y_A AAA family ATPase, P60 75.8 7.8 0.00027 29.1 6.4 37 220-257 10-46 (83)
284 3ubw_A 14-3-3E, 14-3-3 protein 75.7 52 0.0018 30.7 21.5 56 449-504 173-229 (261)
285 2br9_A 14-3-3E, 14-3-3 protein 74.7 52 0.0018 30.2 24.9 59 616-674 146-205 (234)
286 3esl_A Checkpoint serine/threo 74.6 47 0.0016 29.6 13.9 88 286-380 58-145 (202)
287 2v6x_A Vacuolar protein sortin 74.6 12 0.00042 28.1 7.3 49 220-269 12-60 (85)
288 2wvi_A Mitotic checkpoint seri 74.4 12 0.0004 32.3 7.9 83 494-587 43-125 (164)
289 3re2_A Predicted protein; meni 74.3 66 0.0023 31.3 13.5 53 577-632 276-328 (472)
290 2npm_A 14-3-3 domain containin 74.1 57 0.002 30.4 23.3 183 475-673 29-229 (260)
291 3iqu_A 14-3-3 protein sigma; s 74.0 54 0.0019 30.1 23.6 183 475-674 9-208 (236)
292 2br9_A 14-3-3E, 14-3-3 protein 72.4 59 0.002 29.8 21.4 56 449-504 147-203 (234)
293 2rpa_A Katanin P60 ATPase-cont 71.7 8 0.00027 28.5 5.3 41 222-263 13-53 (78)
294 3iqu_A 14-3-3 protein sigma; s 71.4 63 0.0021 29.7 20.9 178 311-503 11-205 (236)
295 2cpt_A SKD1 protein, vacuolar 71.1 17 0.00057 29.3 7.7 55 220-275 17-72 (117)
296 2qx5_A Nucleoporin NIC96; mRNA 69.8 1.3E+02 0.0044 32.7 17.4 27 516-542 535-563 (661)
297 3u84_A Menin; MLL, JUND, ledgf 69.6 88 0.003 31.1 13.4 66 577-647 298-363 (550)
298 4a1g_A Mitotic checkpoint seri 69.0 12 0.00041 31.8 6.6 84 493-587 47-130 (152)
299 4aez_C MAD3, mitotic spindle c 68.9 47 0.0016 30.2 10.9 85 284-380 96-180 (223)
300 4aez_C MAD3, mitotic spindle c 68.1 12 0.00042 34.0 6.9 84 493-587 96-179 (223)
301 4gq4_A Menin; tumor suppressor 66.7 84 0.0029 31.3 12.7 54 576-632 282-335 (489)
302 3efz_A 14-3-3 protein; 14-3-3, 65.3 50 0.0017 30.9 10.6 74 306-379 140-226 (268)
303 2wvi_A Mitotic checkpoint seri 64.6 27 0.00091 30.1 8.1 83 242-337 43-125 (164)
304 4a1g_A Mitotic checkpoint seri 64.3 25 0.00086 29.8 7.7 84 241-337 47-130 (152)
305 3uzd_A 14-3-3 protein gamma; s 60.7 1.1E+02 0.0036 28.4 23.3 179 311-504 7-204 (248)
306 2crb_A Nuclear receptor bindin 59.5 55 0.0019 24.7 8.6 41 303-343 10-50 (97)
307 4gq2_M Nucleoporin NUP120; bet 55.5 49 0.0017 38.0 10.8 98 218-320 837-948 (950)
308 2cpt_A SKD1 protein, vacuolar 54.7 68 0.0023 25.7 8.4 47 648-694 24-72 (117)
309 3efz_A 14-3-3 protein; 14-3-3, 54.0 31 0.0011 32.2 7.1 56 616-671 168-226 (268)
310 4gq2_M Nucleoporin NUP120; bet 52.7 1.1E+02 0.0038 35.1 13.2 71 434-504 842-927 (950)
311 2ijq_A Hypothetical protein; s 52.4 30 0.001 29.6 6.3 73 354-426 36-109 (161)
312 4a5x_A MITD1, MIT domain-conta 51.0 76 0.0026 23.8 8.5 42 645-686 19-61 (86)
313 3t5v_B Nuclear mRNA export pro 49.9 78 0.0027 32.5 10.1 98 476-574 178-281 (455)
314 2w2u_A Hypothetical P60 katani 49.5 77 0.0026 23.5 7.4 30 647-676 24-53 (83)
315 1wfd_A Hypothetical protein 15 47.5 91 0.0031 23.7 8.0 40 646-685 19-59 (93)
316 2v6y_A AAA family ATPase, P60 47.4 84 0.0029 23.3 7.5 30 647-676 16-45 (83)
317 2v6x_A Vacuolar protein sortin 46.3 89 0.003 23.2 8.0 43 646-688 17-60 (85)
318 2r17_C Vacuolar protein sortin 46.0 2.1E+02 0.007 27.4 22.4 119 304-425 95-228 (298)
319 2rpa_A Katanin P60 ATPase-cont 45.0 25 0.00086 25.8 4.0 32 475-506 13-44 (78)
320 3t5v_B Nuclear mRNA export pro 43.7 67 0.0023 33.0 8.5 70 354-424 180-253 (455)
321 1wy6_A Hypothetical protein ST 41.6 74 0.0025 26.4 6.5 53 610-670 101-153 (172)
322 2ijq_A Hypothetical protein; s 41.3 53 0.0018 28.1 6.1 72 562-633 36-108 (161)
323 2a9u_A Ubiquitin carboxyl-term 39.1 1.6E+02 0.0056 24.5 8.6 40 644-685 44-83 (144)
324 3ax2_A Mitochondrial import re 38.4 36 0.0012 24.6 3.9 29 688-717 21-49 (73)
325 2cwy_A Hypothetical protein TT 34.8 1E+02 0.0035 23.5 6.2 67 563-633 6-72 (94)
326 2cwy_A Hypothetical protein TT 34.6 79 0.0027 24.2 5.6 67 356-426 7-73 (94)
327 2vkj_A TM1634; membrane protei 34.5 1.4E+02 0.0049 22.2 8.0 47 643-695 54-101 (106)
328 3t5x_A PCI domain-containing p 32.9 1.2E+02 0.004 27.2 7.4 36 260-295 9-44 (203)
329 1om2_A Protein (mitochondrial 32.7 82 0.0028 24.1 5.2 29 688-717 24-52 (95)
330 2wb7_A PT26-6P; extra chromoso 32.3 2.1E+02 0.0072 29.3 9.5 40 325-364 449-488 (526)
331 3rau_A Tyrosine-protein phosph 32.0 3.8E+02 0.013 26.4 12.8 35 305-339 114-157 (363)
332 2wm9_A Dedicator of cytokinesi 31.8 2.7E+02 0.0092 28.3 10.8 77 599-675 10-121 (428)
333 2vkj_A TM1634; membrane protei 31.5 1.6E+02 0.0055 21.9 8.0 48 307-360 52-100 (106)
334 1om2_A Protein (mitochondrial 31.4 1E+02 0.0034 23.6 5.5 30 477-506 23-52 (95)
335 3ax2_A Mitochondrial import re 30.9 74 0.0025 23.0 4.5 31 476-506 19-49 (73)
336 2wb7_A PT26-6P; extra chromoso 30.7 1.7E+02 0.0056 30.1 8.5 41 617-657 449-489 (526)
337 3t5x_A PCI domain-containing p 28.4 1.9E+02 0.0063 25.8 7.9 59 471-533 11-69 (203)
338 1wy6_A Hypothetical protein ST 27.5 2.1E+02 0.0072 23.8 7.0 34 346-379 121-154 (172)
339 2qx5_A Nucleoporin NIC96; mRNA 26.8 6.3E+02 0.022 27.3 19.9 25 225-250 156-180 (661)
340 3myv_A SUSD superfamily protei 25.9 77 0.0026 32.7 5.6 33 598-630 188-220 (454)
341 2xze_A STAM-binding protein; h 25.7 80 0.0027 26.5 4.6 39 644-683 42-80 (146)
342 3kez_A Putative sugar binding 24.3 85 0.0029 32.4 5.6 33 597-629 193-225 (461)
343 3myv_A SUSD superfamily protei 23.6 1.1E+02 0.0038 31.5 6.3 32 389-420 187-218 (454)
344 2pm7_A Protein WEB1, protein t 23.5 5.6E+02 0.019 25.6 17.3 170 525-709 164-360 (399)
345 2wm9_A Dedicator of cytokinesi 22.9 5.2E+02 0.018 26.1 11.1 34 304-337 7-40 (428)
346 1zb1_A BRO1 protein; AIP1, BRO 22.8 5.7E+02 0.02 25.4 11.7 57 535-591 217-290 (392)
347 3r9m_A BRO1 domain-containing 22.0 5.8E+02 0.02 25.2 14.1 34 306-339 112-157 (376)
348 3kez_A Putative sugar binding 22.0 1.2E+02 0.0043 31.1 6.3 32 389-420 193-224 (461)
349 2dl1_A Spartin; SPG20, MIT, st 21.4 3.1E+02 0.011 21.8 9.5 75 615-713 18-99 (116)
350 1zb1_A BRO1 protein; AIP1, BRO 21.3 3.3E+02 0.011 27.2 9.1 19 238-256 145-163 (392)
351 2yin_A DOCK2, dedicator of cyt 21.3 6.5E+02 0.022 25.5 12.2 119 409-529 12-145 (436)
352 3snx_A SUSD homolog, putative 20.1 1.4E+02 0.0047 30.8 6.1 33 262-294 188-220 (460)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.4e-37 Score=324.82 Aligned_cols=385 Identities=19% Similarity=0.210 Sum_probs=345.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004812 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (729)
.+|..++..|+ +++|+..+.++++.. |+...++..+|.++...|++++|+.++++++... +..
T Consensus 4 ~~a~~~~~~g~-~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~-- 66 (388)
T 1w3b_A 4 ELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL-- 66 (388)
T ss_dssp THHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred hHHHHHHHCCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc--
Confidence 56888999997 999999999988763 4456778899999999999999999999999875 333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
..++..+|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|+..|+++++..|...
T Consensus 67 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 135 (388)
T 1w3b_A 67 --AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY- 135 (388)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Confidence 345999999999999999999999999998 788899999999999999999999999999999876543
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
.++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 136 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 136 -------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp -------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 56889999999999999999999999864 4556778999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++.
T Consensus 199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888899999999999999999999999999998 344467899999999999999999999999998
Q ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (729)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (729)
+.+.. ..++..+|.++...|++++|+.+|++++++. +....++..+|.++...|++++|+.+|++
T Consensus 266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75543 4678999999999999999999999999862 12356889999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
++++ +|+...++..+|.+|...|++++|+.+|++++++ +|....+++.+|.++...|+
T Consensus 331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence 9987 7888899999999999999999999999999975 68889999999999998874
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-36 Score=321.71 Aligned_cols=378 Identities=18% Similarity=0.249 Sum_probs=338.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (729)
.+|..++..|++++|+..|.+++... ++++ .++..+|.++...|++++|+.++++++.. +|..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~ 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 36888999999999999999998875 4443 34788999999999999999999999988 7889
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004812 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (729)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (729)
..++..+|.++...|++++|+..|++++.+.|.. ..++..+|.++...|++++|+..|++++.. .|
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p 132 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP 132 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence 9999999999999999999999999999986544 356899999999999999999999999864 45
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 198 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------ 198 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 55678889999999999999999999999998 7888899999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
.|....++..+|.++...|++++|+..|++++.+.+.. ..++..+|.++...|++++|+..|++++++.
T Consensus 199 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 267 (388)
T 1w3b_A 199 ---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267 (388)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 34457789999999999999999999999999986654 5788899999999999999999999998851
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++
T Consensus 268 -------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 268 -------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp -------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123568999999999999999999999999998 78888899999999999999999999999998
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccccc
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIELCY 727 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~~y 727 (729)
++ +|+...++..+|.++...|++++|+ ..|+++++++|+ ..+..++.+|
T Consensus 333 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHhHHHHH
Confidence 65 6888899999999999999999999 999999999998 5555555443
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-35 Score=330.79 Aligned_cols=461 Identities=12% Similarity=0.087 Sum_probs=372.3
Q ss_pred cccCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004812 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
+...+..+...+++..++..+.......|+. ..++.++..+...|+ +++|+..|++++.. +....++.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~----------~~~~~~~~ 154 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY----------NRSSACRY 154 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG----------GTCHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc----------ccchhHHH
Confidence 3444455566777777775555555555654 567789999999997 99999998887642 22356788
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcccchhh-------ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 004812 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIE-------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (729)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (729)
.++.+|...|++++|+..|++........ ...........+|+.+|.+|...|++++|+.+|++++..
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 229 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV----- 229 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 99999999999999999998643221000 000000124567999999999999999999999999987
Q ss_pred CCCCchHHHHHHHH--------------------------------------HHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004812 343 GETDPRVGETCRYL--------------------------------------AEAHVQALQFSEAQKFCQMALDIHKDNG 384 (729)
Q Consensus 343 ~~~~~~~~~~~~~l--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (729)
+|....++..+ +..|...|++++|+.+|+++++. +..
T Consensus 230 ---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~- 304 (597)
T 2xpi_A 230 ---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS- 304 (597)
T ss_dssp ---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-
T ss_pred ---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-
Confidence 45555555444 33445678899999999988776 211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (729)
Q Consensus 385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (729)
..++..++.++...|++++|+.+|++++... +....++..++.++...|++++|+..+++++..
T Consensus 305 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 368 (597)
T 2xpi_A 305 -------SDLLLCKADTLFVRSRFIDVLAITTKILEID------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--- 368 (597)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred -------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---
Confidence 4678999999999999999999999987542 223456788999999999999999999999976
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
.|....++..+|.+|...|++++|+.+|++++++ .+....++..++.+|...|++++|+.+|++++
T Consensus 369 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 369 -----HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp -----CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777899999999999999999999999999998 33346789999999999999999999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (729)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (729)
...+.. ..++..++.+|...|++++|+.+|++++++. +. ...++..+|.+|...|++++|+.+|+
T Consensus 435 ~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 435 RLFQGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYALF----QY----DPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp HTTTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CC----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC----ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 876543 3678899999999999999999999998752 11 34679999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004812 625 EARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703 (729)
Q Consensus 625 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A 703 (729)
++++....... +|+. ..++..+|.+|...|++++|+.+|++++++ .|....++..|+.+|...|++++|
T Consensus 500 ~~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 500 NALLLVKKTQS--NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHHHSCC--CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhcccc--chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHH
Confidence 99998655322 4553 789999999999999999999999999987 477788999999999999999999
Q ss_pred HHHHHHHHHhhccc--cCCCccccccc
Q 004812 704 KAQSLETLLDANSR--VNNDGIELCYG 728 (729)
Q Consensus 704 ~~~~l~~al~~~p~--~~~~~l~~~yg 728 (729)
. ..|+++++++|+ ..+..++.+|.
T Consensus 570 ~-~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 570 I-THLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp H-HHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred H-HHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9 999999999998 66666776664
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-33 Score=312.42 Aligned_cols=438 Identities=12% Similarity=0.042 Sum_probs=353.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
.....|..++..+...|+ +++|+.+|++++... |++ ..+..+|.+|...|++++|+..|++++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~-------p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 147 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDIT-------GNP---NDAFWLAQVYCCTGDYARAKCLLTKEDLYN--- 147 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---
T ss_pred HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhC-------CCc---hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---
Confidence 456788999999999997 999999999998653 222 456789999999999999999999997652
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 370 (729)
.+ ..++..++.+|...|++++|+..|++..... ........+....++..+|.+|...|++++|+
T Consensus 148 ---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 148 ---RS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp ---TC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---cc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 22 2358899999999999999999998532110 00000011446889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC------------------------------CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 371 KFCQMALDIHKDNGSPA------------------------------SLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 371 ~~~~~al~~~~~~~~~~------------------------------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
.+|+++++..+...... .......+..++..|...|++++|+..|++++.
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 99999998765431100 000001112224455677888999998887653
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (729)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (729)
. +....++..++.+|...|++++|+.+|++++.. .|....++..++.++...|++++|+..++++
T Consensus 301 ~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 301 L-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp G-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 345678899999999999999999999999987 5666778999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
+.. .+....++..+|.+|...|++++|+.+|++++++.+.. ..++..++.+|...|++++|+.+
T Consensus 366 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 366 VDR---------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHH---------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred Hhh---------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 977 33346788999999999999999999999999875543 56888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
|++++... +. ...++..+|.+|...|++++|+.+|+++++. .|....++..+|.+|...|++++
T Consensus 430 ~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 430 YTTAARLF----QG----THLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHHTT----TT----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC----cc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence 99998752 11 2468889999999999999999999999998 77778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChhH-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccccc
Q 004812 661 AIEILEFVVGIREEKLGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIELCY 727 (729)
Q Consensus 661 A~~~~~~al~~~~~~~~~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~~y 727 (729)
|+.+|++++++.... +.+|+. ..++..++.++...|++++|. ..|+++++++|+ ..+..++.+|
T Consensus 494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAI-DALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999876432 234554 789999999999999999999 999999999996 5555555544
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-31 Score=292.26 Aligned_cols=402 Identities=12% Similarity=0.091 Sum_probs=336.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (729)
.+..++.+|..++..|+ |++|+.+|++++... |+ ..++..+|.+|...|++++|+..|++++++.
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-------p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALELK-------ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-------cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence 56789999999999997 999999999999873 22 6679999999999999999999999999875
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------h--------------
Q 004812 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-----------------------L-------------- 342 (729)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~-------------- 342 (729)
+... .+++.+|.++..+|++++|+..|++++...+.. +
T Consensus 70 -p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 70 -PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp -SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred -hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4433 358999999999999999999999987652100 0
Q ss_pred ------------------------C----------CCCchHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcC-
Q 004812 343 ------------------------G----------ETDPRVGETCRYLAEAHVQ---ALQFSEAQKFCQMALDIHKDNG- 384 (729)
Q Consensus 343 ------------------------~----------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~- 384 (729)
+ -..|....++..+|.++.. .|++++|+.+|++++...+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0 0002336778888888876 8999999999999999543222
Q ss_pred -CCCC----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 385 -SPAS----LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (729)
Q Consensus 385 -~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (729)
.+.. +..+.++..+|.++...|++++|+.+|++++.. .+. ..++..+|.++...|++++|+.++++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1111 455778999999999999999999999999864 233 7889999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004812 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (729)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (729)
.. .|....++..+|.++...|++++|+.+|++++.+.. ....++..+|.++...|++++|+.+
T Consensus 298 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 298 KL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP---------ENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS---------SCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87 677778999999999999999999999999998732 2345789999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH---cCCH
Q 004812 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ---RYSI 616 (729)
Q Consensus 540 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~ 616 (729)
+++++...+.. ..++..+|.++...|++++|+.+|++++.+.+...... ....++..+|.++.. .|++
T Consensus 361 ~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 361 FSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCH
Confidence 99999886654 36788999999999999999999999998765432211 113488999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004812 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (729)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 690 (729)
++|+.+|++++.. +|....++..+|.+|...|++++|+.+|++++++ +|....++..+
T Consensus 432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHH
Confidence 9999999999998 7888889999999999999999999999999987 46666655544
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=5.6e-32 Score=299.39 Aligned_cols=421 Identities=14% Similarity=0.147 Sum_probs=327.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004812 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (729)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (729)
..+..++.+|..++..|+ +++|+.+|++++... |....++..+|.+|..+|++++|+..|++++.+.
T Consensus 23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 467889999999999997 999999999999873 4457789999999999999999999999999885
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004812 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (729)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (729)
+.++ .+++.+|.++...|++++|+..|+ ++... |.....+ ...+...+...+|+..+++++.
T Consensus 90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--------~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLN--------GDFDGAS---IEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--------CCCChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 358999999999999999999995 66552 3332222 2234445556778888888876
Q ss_pred HHHhcCCCCCHHH-----------------------------HHHHHHH--------HHHHHHhCCHHHHHHHHHHHHHH
Q 004812 379 IHKDNGSPASLEE-----------------------------AADRRLM--------GLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 379 ~~~~~~~~~~~~~-----------------------------a~~~~~l--------g~~~~~~g~~~~A~~~~~~al~~ 421 (729)
..+.......+.. ......+ +......|++++|+..|++++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5433221111000 0012222 22333445778888888777643
Q ss_pred HHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 422 MIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 422 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
. +..+ ..+.++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|
T Consensus 232 ~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 232 N---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred C---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence 2 2222 23667899999999999999999999999998 566 789999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004812 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (729)
++++.. .+....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|
T Consensus 300 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 300 QKAVDL---------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcc---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence 999998 33346789999999999999999999999999987654 36788999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--
Q 004812 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-- 655 (729)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 655 (729)
+.+|++++... + ....++..+|.++...|++++|+.+|++++........ .......+..+|.++...
T Consensus 364 ~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 364 EAFFNETKLKF----P----TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHHHHHHHHC----T----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC----C----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhh
Confidence 99999999862 1 12468889999999999999999999999998644322 122334567889999999
Q ss_pred --------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 656 --------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 656 --------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|++++|+.+|++++++ +|....++..+|.+|...|++++|+ ..|+++++++|+
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~ 494 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILART 494 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--
T ss_pred ccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence 9999999999999987 5778899999999999999999999 999999999987
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=298.24 Aligned_cols=393 Identities=16% Similarity=0.126 Sum_probs=332.5
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 004812 263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (729)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (729)
..+..+..+|.+++..|+|++|+..|++++... ++ ..++..+|.++...|++++|+..|+++++.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-----PVFYSNLSACYVSVGDLKKVVEMSTKALEL----- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence 346778999999999999999999999999875 22 335899999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC------------------------------------
Q 004812 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP------------------------------------ 386 (729)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------------------ 386 (729)
+|....++..+|.++...|++++|+..|++++...+.....
T Consensus 69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 78889999999999999999999999999998765411000
Q ss_pred -----------------------------------CCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH----h
Q 004812 387 -----------------------------------ASLEEAADRRLMGLICET---KGDHEAALEHLVLASMTMI----A 424 (729)
Q Consensus 387 -----------------------------------~~~~~a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~----~ 424 (729)
..+.....+..+|.++.. .|++++|+.+|++++.... .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 001114567778887776 8999999999999987431 1
Q ss_pred CCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 425 NDQ----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (729)
Q Consensus 425 ~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (729)
.+. .+....++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122 2677889999999999999999999999999998 566 899999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
+... +....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+
T Consensus 297 ~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 297 LKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 9872 2235678999999999999999999999999876543 35788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCC
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---IGR 657 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 657 (729)
|++++...+ . ...++..+|.++...|++++|+.+|++++........ ......++..+|.++.. .|+
T Consensus 361 ~~~~~~~~~----~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 361 FSEAKRKFP----E----APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--IYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHST----T----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS--CSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHcc----c----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHhhhhhcCC
Confidence 999987621 1 2468889999999999999999999999998332110 11113489999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++|+.+|++++.+ +|....++..+|.++...|++++|. ..|+++++++|+
T Consensus 431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~ 481 (514)
T 2gw1_A 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhccc
Confidence 99999999999987 5777889999999999999999999 999999999997
No 8
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=283.31 Aligned_cols=407 Identities=14% Similarity=0.069 Sum_probs=294.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004812 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (729)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (729)
.+.++..+++.+..... ..++...+.+|+.||.++..+|++++|+++|++|+++.+...+.......+.++.++|.+
T Consensus 27 ~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 27 GENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 44555666655544322 223344577889999999999999999999999999865443333222345578999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004812 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (729)
|..+|++++|+.+|++++.+.+...+..++..+.++..+|.++...| +|++|+.+|++++++.|... .++
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--------~~~ 175 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--------EFT 175 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--------HHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--------HHH
Confidence 99999999999999999999988877767778888999988877654 79999999999999976542 446
Q ss_pred HHHHHHHH---HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 396 RLMGLICE---TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 396 ~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
..++.++. ..+++++|++.|++++.+ .|....++..+|..+. ..+++++|+.++++++.+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------- 242 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------- 242 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------
Confidence 66666644 557889999999999865 3334455666666554 456788999999999988
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc------------------
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM------------------ 530 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------ 530 (729)
.|....++..+|.+|...|++++|+..|++++++ .|....++..+|.+|...
T Consensus 243 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~ 312 (472)
T 4g1t_A 243 -APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312 (472)
T ss_dssp -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred -CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888899999999999999999999999999998 444577888899887653
Q ss_pred -chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004812 531 -NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (729)
Q Consensus 531 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (729)
+.+++|+..+++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+ ...+.....++..+|.+
T Consensus 313 ~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 313 LELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence 34667788888887776554 245678999999999999999999999875 12222233455666654
Q ss_pred -HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004812 610 -CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (729)
Q Consensus 610 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 688 (729)
+...|++++|+.+|++++++ .|....... ....+..++++++.. +|..+.++.
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~----------~~~~l~~~~~~~l~~--------~p~~~~~~~ 434 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKI--------NQKSREKEK----------MKDKLQKIAKMRLSK--------NGADSEALH 434 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHH----------HHHHHHHHHHHHHHH--------CC-CTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CcccHHHHH----------HHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 45789999999999999998 555432211 123344556666654 688888999
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 689 RLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.||.+|...|++++|+ .+|++++++.|.
T Consensus 435 ~LG~~~~~~g~~~~A~-~~y~kALe~~~~ 462 (472)
T 4g1t_A 435 VLAFLQELNEKMQQAD-EDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 9999999999999999 999999999887
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.3e-29 Score=273.79 Aligned_cols=400 Identities=14% Similarity=0.115 Sum_probs=297.9
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004812 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (729)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (729)
.+.+....+|..+..++.+|..++..|+ +++|+.+|++++... |....++..+|.+|...|++++|+.+|
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566677889999999999999999997 999999999998762 334778899999999999999999999
Q ss_pred HHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH---HHHHHHHHHHHHhcC
Q 004812 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG---ETCRYLAEAHVQALQ 365 (729)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 365 (729)
++++++. +.. ..++..+|.+|...|++++|+.+|++++.. .|... .++..++.++..
T Consensus 84 ~~al~~~-----p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~--- 143 (450)
T 2y4t_A 84 TKVIQLK-----MDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDEM--- 143 (450)
T ss_dssp HHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHhcC-----CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHH---
Confidence 9999875 333 345888999999999999999999999887 56665 666666554211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004812 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (729)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (729)
..+..+|.++...|++++|+.+|++++.. .+....++..+|.+|...
T Consensus 144 ---------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 144 ---------------------------QRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKE 190 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred ---------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHC
Confidence 12455677777788888888888877653 334456778888888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH------
Q 004812 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG------ 519 (729)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 519 (729)
|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+.. +.......
T Consensus 191 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 191 GEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKK 256 (450)
T ss_dssp TCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHH
Confidence 8888888888888877 466677888888888888888888888888887722 12222211
Q ss_pred ---HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 520 ---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 520 ---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
+..+|.++...|++++|+.+|++++.+.+.. ......++..+|.++...|++++|+.++++++.+.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------- 325 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSI---AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-------- 325 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 2445999999999999999999999875432 22335678899999999999999999999999862
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH------------HHHcC-----ChH
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT------------YDAIG-----RLD 659 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~ 659 (729)
+....++..+|.++...|++++|+.+|++++++ +|+...++..++.+ |..+| +.+
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 223578999999999999999999999999998 78888888888844 55555 567
Q ss_pred HHHHHHHH-HHHHHHHHcCCCC--hhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 660 DAIEILEF-VVGIREEKLGTAN--PDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 660 ~A~~~~~~-al~~~~~~~~~~~--p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
++...|++ ++........... ......+..++.+|..+|+.+++.
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 77888886 4443111100000 113446778888888888877764
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=5.8e-29 Score=268.65 Aligned_cols=344 Identities=15% Similarity=0.151 Sum_probs=293.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004812 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
....++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|+++++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--- 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Confidence 4556999999999999999999999999988 67889999999999999999999999999999986543
Q ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHH---HH------------HHHHHHHHHHcCCHHHH
Q 004812 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA---SV------------DCSIGDTYLSLSRYDEA 451 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A 451 (729)
..++..+|.++...|++++|+.+|++++.. .|... .+ +..+|.++...|++++|
T Consensus 94 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 94 -----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 467999999999999999999999988742 22222 33 34557889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc
Q 004812 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (729)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (729)
+.+|++++.. .|....++..+|.+|...|++++|+.+|++++... +....++..+|.+|...|
T Consensus 163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcC
Confidence 9999999987 67788999999999999999999999999999983 334678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004812 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIE------------AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
++++|+.+|++++.+.+.. ...+ ..+|.++...|++++|+.+|++++.+. +..+...
T Consensus 226 ~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~ 294 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDH-------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYT 294 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHH
T ss_pred CHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHH
Confidence 9999999999999875543 1222 344999999999999999999999852 2233334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
..++..+|.++...|++++|+.++++++.+ +|....++..+|.+|...|++++|+.+|++++++
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 358 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-------- 358 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 568999999999999999999999999998 8888899999999999999999999999999976
Q ss_pred ChhHHHHHHHHHHH------------HHHhC-----CHhHHHHHHHHH-HHhhccc
Q 004812 680 NPDVDDEKRRLAEL------------LKEAG-----RVRSRKAQSLET-LLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~------------~~~~g-----~~~~A~~~~l~~-al~~~p~ 717 (729)
+|+...++..|+.+ |...| +.+++. +.|++ ++..+|+
T Consensus 359 ~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd 413 (450)
T 2y4t_A 359 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPD 413 (450)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGG
T ss_pred CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCC
Confidence 57777888888854 44445 556677 77775 8888888
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=283.19 Aligned_cols=386 Identities=15% Similarity=0.057 Sum_probs=287.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004812 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
.++..+..+..+|.+++..|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.+|++++.+.
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 344556788899999999997 9999999999999998876655567788899999999999999999999999999987
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---hcCHHHHH
Q 004812 296 VIEEGQEHALAKFAGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---ALQFSEAQ 370 (729)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~ 370 (729)
+...++.++. ...++..+|.++... ++|++|+.+|++++++ +|....++..++.++.. .+++++|+
T Consensus 125 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 125 EKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred Hhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHHH
Confidence 6554443321 233577788777665 4799999999999999 68888888888887654 46778999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004812 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446 (729)
Q Consensus 371 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 446 (729)
..|++++++.+.. ..++..+|..+. ..|++++|+.++++++.. .+....++..+|.+|...|
T Consensus 196 ~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 196 DPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcC
Confidence 9999999986544 234566665554 456788999999988764 4555678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHhcC
Q 004812 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-------------------GKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~ 507 (729)
++++|+..|+++++. +|....++..+|.+|... +.+++|+.+|++++.+
T Consensus 262 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---- 329 (472)
T 4g1t_A 262 EPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA---- 329 (472)
T ss_dssp CHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc----
Confidence 999999999999998 788899999999988643 3356778888888877
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 586 (729)
.+....++..+|.++...|++++|+.+|++++.+.+. +.....++..+|.+ +...|++++|+.+|++++.
T Consensus 330 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 330 -----NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp -----CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred -----CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344567889999999999999999999999976321 11223445566654 4578999999999999998
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004812 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (729)
+.+ ... . ..+....+..++++++.. +|....++..||.+|..+|++++|+++|+
T Consensus 401 i~~-----~~~---~----------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 401 INQ-----KSR---E----------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp SCC-----CCH---H----------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred cCc-----ccH---H----------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 621 111 1 111234455667777777 88888899999999999999999999999
Q ss_pred HHHHHH
Q 004812 667 FVVGIR 672 (729)
Q Consensus 667 ~al~~~ 672 (729)
+|+++.
T Consensus 455 kALe~~ 460 (472)
T 4g1t_A 455 RGLESG 460 (472)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999873
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.4e-29 Score=280.16 Aligned_cols=419 Identities=13% Similarity=0.060 Sum_probs=327.4
Q ss_pred ccccCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHH
Q 004812 189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (729)
Q Consensus 189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 268 (729)
.+...+..+...+++..|+..+..+...+|....+++.+|.+++..|+ +++|+..|++++.+. |....++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~ 96 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK---------PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CchHHHH
Confidence 344566677888899999988888888899999999999999999997 999999999999873 4457789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---
Q 004812 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET--- 345 (729)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 345 (729)
..+|.++...|++++|+..|+ ++.+. ++.... ....+...+...+|+..+++++..........
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~-~~~~~-----~~~~~~-------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLS-VLSLN-----GDFDGA-------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HHC-----------------------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHH-HHhcC-----CCCChH-------HHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 999999999999999999996 76664 222111 11233344445677777777765422111111
Q ss_pred --------------------------CchHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004812 346 --------------------------DPRVGETCRYLA--------EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 346 --------------------------~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
++........++ ......+++++|+..|+++++..+.... .....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~~ 242 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LRENA 242 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHHH
Confidence 111111222222 2333446888888888888877654321 11223
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
+.++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|++++.. .|
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~ 307 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NP 307 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CC
Confidence 567899999999999999999999999864 233 678899999999999999999999999998 67
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004812 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
....++..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.++++++...+..
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 377 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL- 377 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 788899999999999999999999999999983 2334678999999999999999999999999986654
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----------CCHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVE 621 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~ 621 (729)
..++..+|.++...|++++|+.+|++++.+.+....... ....+..+|.++... |++++|+.
T Consensus 378 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 378 ------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp ------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 367889999999999999999999999998766543322 223467788999998 99999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+|+++++. +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 450 ~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 450 LLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999 88888999999999999999999999999999884
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=5.2e-28 Score=252.31 Aligned_cols=333 Identities=15% Similarity=0.152 Sum_probs=282.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004812 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
+..++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..|+++++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---- 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence 346899999999999999999999999998 68888999999999999999999999999999986543
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHcCCHHHHH
Q 004812 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSI------------GDTYLSLSRYDEAG 452 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~ 452 (729)
..++..+|.++...|++++|+..|++++.. .| ....++..+ |.++...|++++|+
T Consensus 71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----chHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 367999999999999999999999998743 34 444555544 79999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (729)
.++++++.. .|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------KSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC
Confidence 999999998 6777899999999999999999999999999987 23345789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004812 533 LEQAIKLLQKALKIYNDAPGQQSTV-----AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (729)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (729)
+++|+.++++++...+......... ......+|.++...|++++|+..|++++... +..+.....++..+|
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence 9999999999998865441100000 0112355899999999999999999998863 223333446688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004812 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~ 687 (729)
.++...|++++|+.+|+++++. +|....++..+|.+|...|++++|+.+|++++++ +|+...++
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~ 343 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIR 343 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHH
Confidence 9999999999999999999998 7888889999999999999999999999999976 57777888
Q ss_pred HHHHHHHHHhCC
Q 004812 688 RRLAELLKEAGR 699 (729)
Q Consensus 688 ~~La~~~~~~g~ 699 (729)
..|+.++...++
T Consensus 344 ~~l~~~~~~~~~ 355 (359)
T 3ieg_A 344 EGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776543
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=4e-28 Score=257.96 Aligned_cols=344 Identities=15% Similarity=0.148 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004812 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (729)
+..+..+|.++...|++++|+.+|++++... +.++ ....++..+|.++...|++++|+.++++++.+.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 3458899999999999999999999999982 2222 2467899999999999999999999999999987765
Q ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------------------
Q 004812 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR------------------- 447 (729)
Q Consensus 387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 447 (729)
.....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 3456678899999999999999999999999999988888888888999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 004812 448 -YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (729)
Q Consensus 448 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (729)
+++|+.++++++.+..... +.+....++..+|.+|...|++++|+.++++++.+.... .+......++..+|.+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence 9999999999999988764 467788899999999999999999999999999998773 3466677899999999
Q ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004812 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (729)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (729)
+...|++++|+.++++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+. ......++..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l 313 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSL 313 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence 999999999999999999999886 555566788999999999999999999999999999887654 34457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004812 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (729)
|.+|...|++++|+.+|++++++...... .+....++..+|.++...|+...+...+...
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 99999999999999999999999887644 5677889999999999999875544444433
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=254.58 Aligned_cols=342 Identities=15% Similarity=0.160 Sum_probs=300.7
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
.....++..+|.++...|++++|+.+|++++.+.+. .....+.++..+|.++...|++++|+.++++++.+....+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 345678899999999999999999999999998432 2233467899999999999999999999999999998888
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------------- 489 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 489 (729)
+.+..+.++..+|.++...|++++|+.++++++.+..... +.+....++..+|.+|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 8889999999999999999999999999999999988764 346677899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004812 490 ---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 490 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
+++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+.+.. +.....+.++..+|.
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 999999999999998874 3567788899999999999999999999999999999886 555566778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (729)
+|...|++++|+.+|++++.+...... ......++..+|.++...|++++|+.+|++++.+...... .+....++.
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~ 311 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACW 311 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcC--chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHH
Confidence 999999999999999999999877543 3445788999999999999999999999999999777543 456677999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
.+|.+|..+|++++|+.+|++++++.... ...+....++..|+.++...|+...+.
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 99999999999999999999999998765 345677889999999999999885544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2.9e-27 Score=246.60 Aligned_cols=336 Identities=11% Similarity=0.057 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
+..+..+|.+++..|++++|+..|++++... +..+ .+++.+|.++...|++++|+..|++++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 4568899999999999999999999999875 3333 35899999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hcCCCC----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPA----SLEEAADRRLMGLICETKGDHEAALEHLVL 417 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 417 (729)
.|....++..+|.++...|++++|+..|++++...+ ...... .......+..+|.++...|++++|+..+++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 678889999999999999999999999999998765 332100 000011123348999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (729)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (729)
++.. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..|
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9864 3444578899999999999999999999999987 6777899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHH---------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004812 498 ENALRIYEKPVPGVPPEEIAS---------GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 568 (729)
+++++.... .+.... ....+|.++...|++++|+.++++++...+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999998332 322222 23456899999999999999999999876442 223345677899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
...|++++|+.+|+++++.. +....++..+|.++...|++++|+.+|++++++ +|+...++..+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 346 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL 346 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence 99999999999999999861 123578999999999999999999999999998 88888888888
Q ss_pred HHHHHHcC
Q 004812 649 AGTYDAIG 656 (729)
Q Consensus 649 a~~~~~~g 656 (729)
+.++..++
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=9.6e-26 Score=245.94 Aligned_cols=390 Identities=13% Similarity=0.141 Sum_probs=321.9
Q ss_pred CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH----cCChHHHHHHHH
Q 004812 218 PGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLE 289 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 289 (729)
+..+.+++.+|..++. .++ +++|+.+|++|++. . .+.+++.||.+|.. .+++++|+.+|+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4567899999999998 776 99999999999863 1 25678999999999 999999999999
Q ss_pred HhcccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---
Q 004812 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ--- 362 (729)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 362 (729)
++.+.. + ..+++.||.+|.. .+++++|+.+|+++.+. ....+++.||.+|..
T Consensus 104 ~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 104 KAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence 998652 2 2358889999999 89999999999998765 346789999999998
Q ss_pred -hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004812 363 -ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (729)
Q Consensus 363 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (729)
.+++++|+.+|+++++.. . ..++..+|.+|.. .+++++|+.+|+++... ....+++.
T Consensus 163 ~~~d~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~ 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG----N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence 889999999999998752 1 4679999999998 89999999999998752 22467889
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCC
Q 004812 438 IGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 438 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
+|.+|.. .+++++|+.+|+++++. ....+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------ 288 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------ 288 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence 9999997 89999999999999864 235688999999999 89999999999999764
Q ss_pred CCChHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESM-----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSF 581 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 581 (729)
+ ...++..+|.+|... +++++|+.+|+++.+.. . ..+++.+|.+|...| ++++|+.+|
T Consensus 289 ~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-----~----~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 289 G-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-----D----ATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp T-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-----C----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 1 245788999999998 89999999999998741 1 467889999999877 899999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---
Q 004812 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--- 654 (729)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 654 (729)
+++++. . ...+++.+|.+|.. .+++++|+.+|+++++. ....++..||.+|..
T Consensus 355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence 999874 1 25789999999999 89999999999999874 235689999999999
Q ss_pred -cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 655 -IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 655 -~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
.+++++|+.+|+++++.. +..|....+...|+.++... ...|. ...++.++..|
T Consensus 415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~--~~~a~-~~a~~~~~~~~ 469 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQ--LQQAE-LLSQQYIEKYA 469 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHH--HHHHH-HHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhH--HHHHH-HHHHHHHHHHH
Confidence 899999999999999873 22266788888998887653 34444 33444444434
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=2.3e-26 Score=245.05 Aligned_cols=315 Identities=17% Similarity=0.183 Sum_probs=278.8
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
+..+..+..+|..++..|++++|+.+|++++++. +.++.....++..+|.+|...|++++|+.+|++++.+....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4556778889999999999999999999999885 55555556779999999999999999999999999997764
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC--------------
Q 004812 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-------------- 407 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------- 407 (729)
.+.+....++..+|.+|...|++++|+.+|++++.+.+... .....+.++..+|.++...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 33477889999999999999999999999999999987765 345667889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004812 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (729)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (729)
+++|+.++.+++.+....++.+....++..+|.+|...|++++|+.++++++.+..... +......++..+|.+|
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 99999999999998888888888899999999999999999999999999999987754 3456677999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004812 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (729)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (729)
...|++++|+.+|++++.+.... .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 99999999999999999998763 3455668899999999999999999999999999999877 4555667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 565 GVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
|.+|...|++++|+.+|++++++.+..
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999986543
No 19
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=3.4e-26 Score=243.77 Aligned_cols=313 Identities=16% Similarity=0.200 Sum_probs=277.9
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
+.....+..+|..+...|++++|+.+|++++++.+. +....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 566778889999999999999999999999998433 2234457899999999999999999999999999988888
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------------- 489 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 489 (729)
+.+....++..+|.+|...|++++|+.+|++++.+..... +.+....++..+|.+|...|+
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 8899999999999999999999999999999999988765 467888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004812 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (729)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (729)
+++|+.++++++++.... .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.+|.
T Consensus 199 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHH
Confidence 999999999999987763 3467778899999999999999999999999999999886 444556678999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
..|++++|+.+|++++.+...... ......++..+|.++...|++++|+.+|++++.+...... .+....++..+|
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la 350 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLG 350 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHH
Confidence 999999999999999999887633 3445788999999999999999999999999999877643 466677999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHH
Q 004812 650 GTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
.+|..+|++++|+.+|++++++.+
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999853
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.96 E-value=6.5e-26 Score=233.82 Aligned_cols=312 Identities=19% Similarity=0.222 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
...+...|.+++..|++++|+.+|++++.+. +.++.....++..+|.++...|++++|+.++++++.+.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 4457778999999999999999999999874 55555556779999999999999999999999999997765 2
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC-----------------
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD----------------- 407 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------------- 407 (729)
+.+....++..+|.++...|++++|+.++++++.+.+...+ ....+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 34667889999999999999999999999999999988753 35557789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004812 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (729)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (729)
+++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+..... +.+....++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence 99999999999998888888888899999999999999999999999999999987754 3566677999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004812 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (729)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (729)
...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 99999999999999999998763 3466678899999999999999999999999999998876 4455667788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 565 GVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
|.+|...|++++|..+|++++++.+..
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999976553
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=1.3e-25 Score=244.93 Aligned_cols=351 Identities=15% Similarity=0.090 Sum_probs=301.8
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004812 265 VMCLHVIAAIYCS----LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLE 336 (729)
Q Consensus 265 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 336 (729)
+.+++.+|.+|.. .+++++|+.+|+++++.. + ..+++.||.+|.. .+++++|+.+|+++.+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 6778899999999 899999999999998652 1 2358899999999 9999999999999976
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCH
Q 004812 337 VQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDH 408 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~ 408 (729)
. ....+++.||.+|.. .+++++|+.+|+++.+.. ...++..+|.+|.. .+++
T Consensus 108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCH
Confidence 5 345788999999998 889999999999997752 13678999999998 8899
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004812 409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (729)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (729)
++|+.+|+++... ....+++.+|.+|.. .+++++|+.+|+++++. ....++..+|.+|
T Consensus 168 ~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y 229 (490)
T 2xm6_A 168 VMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence 9999999998752 235788999999998 89999999999999874 2356889999999
Q ss_pred HH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004812 485 NR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQST 556 (729)
Q Consensus 485 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (729)
.. .+++++|+.+|+++++. + ...++..+|.+|.. .+++++|+.+|+++.+. +.
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~------~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~--- 290 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQ------G-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GN--- 290 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTT------T-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TC---
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CC---
Confidence 97 89999999999999865 1 24578899999998 89999999999999754 11
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 004812 557 VAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARS 628 (729)
Q Consensus 557 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~ 628 (729)
..+++.+|.+|... +++++|+.+|+++++. . ...++..+|.+|...| ++++|+.+|+++++
T Consensus 291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 46778999999998 9999999999999874 1 2468899999999877 89999999999987
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRV 700 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~ 700 (729)
. ....+++.||.+|.. .+++++|+.+|+++++. ....++++||.+|.. .+++
T Consensus 360 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 360 K----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence 5 235689999999999 89999999999999863 246789999999999 8999
Q ss_pred hHHHHHHHHHHHhhc
Q 004812 701 RSRKAQSLETLLDAN 715 (729)
Q Consensus 701 ~~A~~~~l~~al~~~ 715 (729)
++|. .+|+++++.+
T Consensus 420 ~~A~-~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAW-AWFDTASTND 433 (490)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHCC
Confidence 9999 9999999998
No 22
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=3e-25 Score=228.83 Aligned_cols=309 Identities=16% Similarity=0.170 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004812 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
..++..|..+...|++++|+.+|++++... +.++ ....++..+|.++...|++++|+.++++++.+..... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence 357889999999999999999999999982 2222 2367899999999999999999999999999987765 3
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------
Q 004812 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------------------- 447 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 447 (729)
....+.++..+|.++...|++++|+.++.+++.+....++......++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 355678899999999999999999999999999998888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004812 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (729)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (729)
+++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++.+.... .+......++..+|.++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence 9999999999999887764 457778899999999999999999999999999997763 34566778999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004812 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (729)
...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+...... ......++..+|
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la 310 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLG 310 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence 99999999999999999999886 555566788899999999999999999999999999887654 344577899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 608 LACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.++...|++++|..+|++++.+...
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=7.6e-27 Score=244.74 Aligned_cols=317 Identities=16% Similarity=0.141 Sum_probs=251.1
Q ss_pred HHHHHcCChHHHHH-HHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004812 273 AIYCSLGQYNEAIP-VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (729)
Q Consensus 273 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (729)
.++...|+|++|+. .|++++.+. +..+......++.+|.++...|++++|+.+|++++.. +|....
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 99 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME 99 (368)
T ss_dssp -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 36777899999999 999999885 3333222335889999999999999999999999988 688889
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh-
Q 004812 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE- 430 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 430 (729)
++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+..+++++...........
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 99999999999999999999999999987543 367999999999999999999999999864322111000
Q ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 431 ---------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 431 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
....+..++.++ ..|++++|+.+|++++.. .|. ...++..+|.++...|++++|+.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011122466666 999999999999999998 566 688999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
++.+ .|....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.
T Consensus 243 al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 243 ALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 9998 33346789999999999999999999999999986544 5788999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 580 SFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 580 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
+|++++.+.+...+. .......+|..+|.++...|++++|..+++++++.+.+.++
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 999999987653111 11123678999999999999999999999999998877654
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=236.13 Aligned_cols=301 Identities=15% Similarity=0.169 Sum_probs=260.0
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
+.....+..+|..++..|++++|+.+|++++...+.... ++..++.++...|++++|+.++.+++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANELFYLSHKLVDL----- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------THHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------hHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence 444567888999999999999999999999998776653 3778889999999999999999999864
Q ss_pred CChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 427 QDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
.|....++..+|.++...| ++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++....
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 3444578899999999999 999999999999987 677788999999999999999999999999999943
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
. ...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++
T Consensus 157 ~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 157 G---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp T---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 34567789999999999999999999999876554 5788999999999999999999999999
Q ss_pred HHHHHhCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 586 SKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (729)
Q Consensus 586 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (729)
.+.+....... +....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|..+|++++|+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHH
Confidence 98765544321 223568999999999999999999999999998 788888999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHhCCHh
Q 004812 665 LEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVR 701 (729)
Q Consensus 665 ~~~al~~~~~~~~~~~p~~~~~~~~La~~~-~~~g~~~ 701 (729)
|++++++ .|+...++..++.++ ...|+.+
T Consensus 293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 9999976 688888999999988 4566544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=2.8e-26 Score=240.36 Aligned_cols=318 Identities=16% Similarity=0.140 Sum_probs=248.6
Q ss_pred HHHHhcCHHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004812 359 AHVQALQFSEAQK-FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (729)
Q Consensus 359 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (729)
++...|+|++|+. .|.+++.+.+..... .+..++.+|.++...|++++|+.+|++++.. .|....++..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLR----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQY 103 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTT----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCccc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 5666789999999 999998776544311 1234789999999999999999999999853 4556678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----
Q 004812 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP----- 512 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 512 (729)
+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.+.........
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999999999998 6778899999999999999999999999999987432100000
Q ss_pred --hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 513 --PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 513 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
.......+..++.++ ..|++++|+.+|++++.+.+... ...++..+|.++...|++++|+.+|++++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 247 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-- 247 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 000011122466666 89999999999999999876521 25788899999999999999999999999862
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+....++..+|.++...|++++|+.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++.
T Consensus 248 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 248 ------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123578999999999999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHHcC---CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 671 IREEKLG---TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 671 ~~~~~~~---~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.....+ ..++....++..||.++...|++++|. ..++++++..++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~ 362 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDLSTLLT 362 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCHHHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHHHHHHH
Confidence 8643311 123444789999999999999999999 988888776554
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.6e-25 Score=228.96 Aligned_cols=295 Identities=16% Similarity=0.114 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004812 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
.+..+|..+...|++++|+.+|++++.. +|....++..++.++...|++++|+.+++++++..+...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----- 90 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP----- 90 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----
Confidence 3778999999999999999999999988 677778888999999999999999999999999866543
Q ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 390 EEAADRRLMGLICETKG-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
.++..+|.++...| ++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++..
T Consensus 91 ---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 154 (330)
T 3hym_B 91 ---VSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL------- 154 (330)
T ss_dssp ---HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 56999999999999 999999999998753 3445577899999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
.|....++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.+.+
T Consensus 155 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 155 -MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI---------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp -TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 5666778888999999999999999999999987 233467899999999999999999999999999987
Q ss_pred hCCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 549 DAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (729)
Q Consensus 549 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (729)
...... +....++..+|.++...|++++|+.+|++++++.+ ....++..+|.++...|++++|+.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--------QNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--------cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 653221 23356788999999999999999999999998621 13468899999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChH
Q 004812 627 RSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLD 659 (729)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 659 (729)
+++ +|+...++..++.++ ...|+.+
T Consensus 297 l~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred Hcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 998 888888999999998 4556543
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1e-23 Score=222.16 Aligned_cols=350 Identities=12% Similarity=0.078 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHH-----------HHHH
Q 004812 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQ-----------KFCQ 374 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~~ 374 (729)
+....+-...+...+++++|...++++.+..... ..+++.. .++.+ .......+++..+. ..++
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 3345555666778999999999999987764332 1223322 23322 22223344444444 5554
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454 (729)
Q Consensus 375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 454 (729)
++-. .+... ........++.+|.++...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.+
T Consensus 89 ~i~~-~~~~~--~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 165 (383)
T 3ulq_A 89 EIDK-KQARL--TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165 (383)
T ss_dssp HHHH-HTHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHh-cCCCc--hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4322 11111 11222345667999999999999999999999988888888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004812 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (729)
Q Consensus 455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (729)
++++++++..... ..+..+.++..+|.+|...|++++|+.+|++++++.++. .+.+..+.++.++|.+|..+|+++
T Consensus 166 ~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 166 ARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999877632 256778899999999999999999999999999998874 457778889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004812 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (729)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (729)
+|+.+|++++.+.... +..+....++..+|.+|...|++++|+.++++++.+.+..++.. ....+..+|.++...|
T Consensus 242 ~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI---YLSEFEFLKSLYLSGP 317 (383)
T ss_dssp HHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCC
Confidence 9999999999998876 44355688999999999999999999999999999988765532 2334677999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
++ ..+++++..+++... .+....++..+|.+|..+|++++|+.+|++++.+.+++..
T Consensus 318 ~~----~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 318 DE----EAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp CH----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred cH----HHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 95 445555555555422 5777889999999999999999999999999999876544
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=2.3e-25 Score=233.31 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=239.0
Q ss_pred HHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004812 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ 365 (729)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 365 (729)
..+.+++... +.++......++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|+
T Consensus 48 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~ 114 (365)
T 4eqf_A 48 SASEKGYYFH-----TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENEN 114 (365)
T ss_dssp -----CCCCC-----SSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhcc-----cCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCC
Confidence 4455555443 2233223345889999999999999999999999998 68889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Q 004812 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDT 441 (729)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~ 441 (729)
+++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+........ .....+..+|.+
T Consensus 115 ~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNN--------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 999999999999986544 46799999999999999999999999987643322211 123445567999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004812 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (729)
+...|++++|+.+|++++.+ .|. ...++..+|.+|...|++++|+.+|++++++ .|....+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~ 249 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQ--------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------RPEDYSL 249 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHH--------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHH
T ss_pred HhhhhhHHHHHHHHHHHHHh--------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHH
Confidence 99999999999999999998 566 6789999999999999999999999999998 3334678
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK---- 595 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 595 (729)
+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+......
T Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 9999999999999999999999999986554 67889999999999999999999999999876543321
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
......+|..++.++...|+.+.|..+..+.+..+.+.++
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 362 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFN 362 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTT
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcC
Confidence 1123578999999999999999999988887766555443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=3.5e-25 Score=231.91 Aligned_cols=283 Identities=17% Similarity=0.112 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (729)
..++.+|..+...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+ .|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 131 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPN 131 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence 34788999999999999999999988764 3445678899999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
...++..+|.+|...|++++|+.+|++++.+......... .......+..+|.++...|++++|+.+|++++.+.+...
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 8889999999999999999999999999998322100000 001133445569999999999999999999999865421
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (729)
...++..+|.+|...|++++|+.+|++++++. +....++..+|.+|...|++++|+.+|++++++
T Consensus 212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 15688899999999999999999999999872 123578999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHHhCCHhHHHHHH
Q 004812 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD----VDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
+|....++..+|.+|..+|++++|+.+|++++++.....++.++. ...++..|+.++...|+.+.+. ..
T Consensus 277 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 349 (365)
T 4eqf_A 277 ------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ-AA 349 (365)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence 888899999999999999999999999999999976544433222 3678899999999999999988 66
Q ss_pred HHHH
Q 004812 708 LETL 711 (729)
Q Consensus 708 l~~a 711 (729)
.++.
T Consensus 350 ~~~~ 353 (365)
T 4eqf_A 350 NLGD 353 (365)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 5553
No 30
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=4.6e-23 Score=217.23 Aligned_cols=349 Identities=12% Similarity=0.021 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHH--HHHHHHcCCHHHHH-----------HHH
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSL-----------MCY 331 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~ 331 (729)
.....+-...+...+++++|..+++.+........ .+.. +..++.+ .......+++..+. ..+
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~--~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME--EDQD--LHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC--CCHH--HHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc--cchH--HHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 33444456667889999999999999866532211 1221 1122222 22223344444444 444
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHH
Q 004812 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411 (729)
Q Consensus 332 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 411 (729)
++.-...... +.......++.+|.++...|++++|+.+|++++.+..... +....+.++..+|.+|...|++++|
T Consensus 88 ~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 88 LEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4432221110 0011123456699999999999999999999999877654 3456788999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH
Q 004812 412 LEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490 (729)
Q Consensus 412 ~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 490 (729)
+.++.+++.+....++ .+..+.++..+|.+|..+|++++|+.+|++++++.+... +.+..+.++.++|.+|...|++
T Consensus 163 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCH
Confidence 9999999999988877 778889999999999999999999999999999988764 4677788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 004812 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (729)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (729)
++|+.+|++++++.+... +.+....++.++|.++..+|++++|+.++++++.+.+.. +....... +..+|.++..
T Consensus 241 ~~A~~~~~~al~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~-~~~l~~~~~~ 315 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESN---ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSE-FEFLKSLYLS 315 (383)
T ss_dssp HHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHHHhC
Confidence 999999999999987642 236678999999999999999999999999999998876 33333333 6679999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.|++ ..+.+++..++... ..+....++..+|.+|...|++++|..+|++++++.+++..
T Consensus 316 ~~~~----~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 316 GPDE----EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp SCCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred CCcH----HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9995 44555555555542 23456778899999999999999999999999999766544
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=1.4e-22 Score=212.90 Aligned_cols=337 Identities=12% Similarity=0.096 Sum_probs=257.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--HHHhcCHHHHH---------HHHHHHHHHHHhcCC
Q 004812 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA--HVQALQFSEAQ---------KFCQMALDIHKDNGS 385 (729)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~ 385 (729)
.+...+++++|...++++.......- .+... ..++.+... ....+.+..+. ..++..-......
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 95 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQME--EDQDL-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL-- 95 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHH-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHH-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence 34789999999999999866643321 12222 233333222 12223322222 3343322111111
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (729)
Q Consensus 386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (729)
+.......++.+|..+...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.+++++++++...
T Consensus 96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 1122344678899999999999999999999999888888888899999999999999999999999999999998765
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004812 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (729)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (729)
.+ ..+..+.++..+|.+|...|++++|+.+|++++++.++. .+....+.++.++|.+|..+|++++|+.++++++.
T Consensus 175 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 175 PL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 31 134678899999999999999999999999999998774 34567788999999999999999999999999999
Q ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC---HHHHHHH
Q 004812 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS---INEAVEL 622 (729)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~ 622 (729)
+.... +.+.. ..++..+|.++...|++++|+.++++++.+....+... ....+..++.++...++ +.+|+.+
T Consensus 251 ~~~~~-~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 251 VSREK-VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF---YKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHH-CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHhh-CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 98765 33333 78899999999999999999999999999876654432 33456788889988888 5555555
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
+++ .. ..+....++..+|.+|...|++++|+.+|++++++.+++..
T Consensus 326 ~~~-------~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 326 FEK-------KN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHH-------TT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-------CC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 544 22 25677788899999999999999999999999998776543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.9e-23 Score=214.60 Aligned_cols=278 Identities=17% Similarity=0.122 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (729)
..++.+|..+...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.. .|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcC
Confidence 34788999999999999999999999864 3445678889999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--------------HH-HHHhcchHHHHH
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV--------------SS-IYESMNELEQAI 537 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~ 537 (729)
...++..+|.++...|++++|+.+|++++...... ...+..+ +. ++...|++++|+
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---------TTC--------------------CCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 78899999999999999999999999999874331 1222222 44 588899999999
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHH
Q 004812 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617 (729)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 617 (729)
.++++++...+.. ..++..+|.++...|++++|+.++++++... +....++..+|.++...|+++
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 159 TLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHH
Confidence 9999999886554 5788999999999999999999999999862 123578999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC----ChhHHHHHHHHHHH
Q 004812 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA----NPDVDDEKRRLAEL 693 (729)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~p~~~~~~~~La~~ 693 (729)
+|+.+|+++++. .|....++..+|.+|..+|++++|+.+|++++.+.....+.. ......++..++.+
T Consensus 224 ~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 224 EALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 999999999998 788888999999999999999999999999998852110000 01178899999999
Q ss_pred HHHhCCHhHHHHHHHHHHHhhccc
Q 004812 694 LKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 694 ~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+...|++++|. ..+++++...|+
T Consensus 296 ~~~~g~~~~A~-~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVE-LTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHH-HHTTCCSHHHHH
T ss_pred HHhcCCHHHHH-HHHHHHHHhcch
Confidence 99999999999 999999998887
No 33
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=6.6e-22 Score=207.85 Aligned_cols=340 Identities=13% Similarity=0.072 Sum_probs=260.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH--HHHHcCChHHHH---------HHHHHhcc
Q 004812 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA--IYCSLGQYNEAI---------PVLEQSIE 293 (729)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~ 293 (729)
+.--......++ +++|...++++...+.... .+.... .++.+-. .....+.+..+. ..+++.-.
T Consensus 16 l~~wy~~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 16 INEWYKMIRQFS-VPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 333334466775 9999999999877665442 223332 2222222 122234444343 44544322
Q ss_pred cchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004812 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373 (729)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 373 (729)
.. .+.+.......++.+|..+...|++++|+.+|++++.+.... .+.+..+.++..+|.+|...|++++|+.++
T Consensus 91 ~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 91 PQ----KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp GG----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cC----CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 21 111223334467889999999999999999999999886543 223668889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF 453 (729)
Q Consensus 374 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 453 (729)
++++++.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.
T Consensus 165 ~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 165 LQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999987653 1345678899999999999999999999999999998888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch-
Q 004812 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE- 532 (729)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 532 (729)
+|++++.+.+... +|....++..+|.++...|++++|+.++++++++..... .+.....+..++.++...++
T Consensus 244 ~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 244 HFQKAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH
Confidence 9999999988775 677789999999999999999999999999999976642 22334456788888888888
Q ss_pred --HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 533 --LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 533 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
+.+|+.++++ . +.......++..+|.+|...|++++|..+|++++++.+.+
T Consensus 317 ~~~~~al~~~~~-------~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 317 RKIHDLLSYFEK-------K-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHHHHHHHHH-------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------C-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5555555544 3 3344556778899999999999999999999999986654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=7.5e-23 Score=210.18 Aligned_cols=290 Identities=14% Similarity=0.093 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004812 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
....++.+|..++..|++++|+.+|++++... +.. ..++..+|.++...|++++|+.+|++++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PER----EEAWRSLGLTQAENEKDGLAIIALNHARML------ 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 34557889999999999999999999999875 333 335889999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHH-HH-HHHHhCCHHHHHHHHH
Q 004812 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE-----EAADRRLM-GL-ICETKGDHEAALEHLV 416 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~a~~~~~l-g~-~~~~~g~~~~A~~~~~ 416 (729)
.|....++..+|.++...|++++|+..+++++...+......... .......+ +. ++...|++++|+.+++
T Consensus 85 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 85 --DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred --CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 678889999999999999999999999999999877654331100 00001112 44 5888999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496 (729)
Q Consensus 417 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 496 (729)
+++.. .+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+
T Consensus 163 ~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 163 AALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98764 3334678899999999999999999999999998 677788999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc-----HHHHHHHHHHHHHHc
Q 004812 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYML 571 (729)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~ 571 (729)
|+++++. .+....++..+|.++...|++++|+.+|++++.+.+...+.... ...++..+|.++...
T Consensus 229 ~~~a~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 229 YNRALDI---------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc---------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999998 23346688999999999999999999999999998774222211 467889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC
Q 004812 572 GNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~ 593 (729)
|++++|..++++++...+...+
T Consensus 300 g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp TCHHHHHHHTTCCSHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999988766443
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=4.4e-22 Score=219.20 Aligned_cols=425 Identities=12% Similarity=0.004 Sum_probs=310.6
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004812 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
..+|....+|..++.. ...|+ +++|+..|++|++.+ |.....|..++..+...|++++|+.+|++++..
T Consensus 7 ~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 7 EENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4578899999999984 77886 999999999999864 455778899999999999999999999999988
Q ss_pred chhhccccchHHHHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-------
Q 004812 295 PVIEEGQEHALAKFAGHMQLGD-TYAMLGQLENSLM----CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ------- 362 (729)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------- 362 (729)
. + +. ..|..++. +....|++++|.. .|++++.. .|. ++....+|..++.....
T Consensus 76 ~-----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 76 V-----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp C-----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSST
T ss_pred C-----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccH
Confidence 5 3 21 23666664 4456788887776 55555543 332 34556777777776655
Q ss_pred --hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHHHHHhCCC
Q 004812 363 --ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-------------ETKGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 363 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
.|++++|..+|++++.. |.. .. ...+....... ...+++..|...+............
T Consensus 141 ~~~~~~~~a~~~y~~al~~-P~~----~~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVN-PMI----NI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp THHHHHHHHHHHHHHHTTS-CCT----TH--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhHHHHHHHHHHHHHhc-hhh----hH--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999983 321 11 11222221111 2345677777776653322222211
Q ss_pred -----Ch-------hHHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-
Q 004812 428 -----DA-------EVASVDCSIGDTYLS----LSRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR- 486 (729)
Q Consensus 428 -----~~-------~~~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 486 (729)
.+ .....|......... .++. ..++..|++++.. .|....+|..+|.++..
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~ 285 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS 285 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence 11 112334333322222 1232 4788899999998 68888999999999986
Q ss_pred ------cCCHH-------HHHHHHHHHHH-HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 487 ------TGKLR-------ESKSYCENALR-IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 487 ------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
.|+++ +|+..|+++++ + .|....++..++.++...|++++|...|++++.+.+..
T Consensus 286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 354 (530)
T 2ooe_A 286 SKLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-- 354 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--
T ss_pred chhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC--
Confidence 79987 88999999886 4 23346789999999999999999999999999863322
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q 004812 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILE 631 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~ 631 (729)
...+|..++.++...|++++|+..|+++++.. +. ....+...+.+ +...|++++|..+|+++++.
T Consensus 355 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~~----~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-- 420 (530)
T 2ooe_A 355 ----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-- 420 (530)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----TC----CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----CC----chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence 13578899999999999999999999998741 11 12233344444 34689999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
.|+...++..++.++...|++++|..+|++++... +.+|. ....+..........|+.+.+. ..+.+
T Consensus 421 ------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-----~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r 488 (530)
T 2ooe_A 421 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKR 488 (530)
T ss_dssp ------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-----CSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHH
T ss_pred ------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence 67778899999999999999999999999998752 33453 3457777788888999999999 99999
Q ss_pred HHhhccc
Q 004812 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
+++..|+
T Consensus 489 ~~~~~p~ 495 (530)
T 2ooe_A 489 RFTAFRE 495 (530)
T ss_dssp HHHHTHH
T ss_pred HHHHCch
Confidence 9999995
No 36
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.91 E-value=4.7e-21 Score=201.09 Aligned_cols=312 Identities=13% Similarity=0.074 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Q 004812 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (729)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (729)
...++..+|.++...|++++|+.++++++...+.. .....+.++..+|.++...|++++|+.++.+++.+....++.
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 45677888999999999999999999999876422 223456678999999999999999999999999998888777
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
.....++..+|.++...|++++|+.++++++.+.....+..++....++..+|.++...|++++|..++++++.+.....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 77788899999999999999999999999999988876554577888999999999999999999999999999976532
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
++....++..+|.++...|++++|+.++++++.+.+.. +... ........++.++...|++++|..++++++..
T Consensus 170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 23356788999999999999999999999999987654 2221 11122224556688999999999999988753
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
. ..........+..+|.++...|++++|...+++++........ .+....++..+|.++...|++++|...+++
T Consensus 245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 1111222346788999999999999999999999998776432 234456889999999999999999999999
Q ss_pred HHHHHHH
Q 004812 668 VVGIREE 674 (729)
Q Consensus 668 al~~~~~ 674 (729)
++.+...
T Consensus 319 al~~~~~ 325 (373)
T 1hz4_A 319 ALKLANR 325 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998753
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.3e-22 Score=203.80 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=227.7
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
.+++....++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.+|...|++++|+.+|++++.+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999888777899999999999999999999999999999999976
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
... +.+.+....++..+|.++...|++++|+.++++++.+.....+. .+....++..+|.++...|++++|+.+|+++
T Consensus 101 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 101 KTL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 23457778999999999999999999999999999998654332 2456778999999999999999999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCh------hHHHHHHHHHHHHHHcCC
Q 004812 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHP------DTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~------~~~~~~~~la~~~~~~g~ 657 (729)
+.+.........+....++..+|.++...|++++|+.+|++++++..... +...+ .....+..++..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 99988876666677788999999999999999999999999999865421 10011 123345555666677778
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+|...++++.. .+|....++..+|.+|...|++++|. .+|++++++.|+
T Consensus 260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~~~ 310 (311)
T 3nf1_A 260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAE-TLEEAAMRSRKQ 310 (311)
T ss_dssp SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHhhc
Confidence 8888888887774 37999999999999999999999999 999999999874
No 38
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-21 Score=199.69 Aligned_cols=279 Identities=19% Similarity=0.176 Sum_probs=227.2
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004812 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 421 (729)
.+.++|....++..+|.++...|++++|+.++++++++............+.++..+|.++...|++++|+.++++++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999887765556777889999999999999999999999999988
Q ss_pred HHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 422 MIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (729)
Q Consensus 422 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (729)
.... .+.+....++..+|.++...|++++|+.+|++++.+.....+.+++....++..+|.++...|++++|+.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7665 66788899999999999999999999999999999998887777899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC----CCC----CcHHHHHHHHHHHHHHc
Q 004812 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP----GQQ----STVAGIEAQMGVMYYML 571 (729)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~----~~~~~~~~~la~~~~~~ 571 (729)
++.+..... +.+.+....++..+|.++...|++++|+.++++++.+.+... ... ......+..++..+...
T Consensus 179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 999987753 345677788999999999999999999999999999876420 000 11223344445555566
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
+.+.+|...+.++... .+....++..+|.+|...|++++|+.+|++++++
T Consensus 258 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666677666542 3456789999999999999999999999999988
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2e-21 Score=192.11 Aligned_cols=236 Identities=16% Similarity=0.155 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..+..+..+|.++...|++++|+.+|++++.. . ....++..+|.++...|++++|+.++++++++....
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 71 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-- 71 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence 34678899999999999999999999999998 3 556889999999999999999999999999996653
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
..+.+....++..+|.++...|++++|+.+|++++.+.+. +.++...|++++|+..+++++..
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 2234445789999999999999999999999999987532 45677888999999999998875
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
.+....++..+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3446788999999999999999999999999998 78888899999999999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
++ .|....++..+|.++...|++++|. ..|+++++++|
T Consensus 201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~ 238 (258)
T 3uq3_A 201 EK--------DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKDA 238 (258)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred Hh--------CHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCh
Confidence 87 5778889999999999999999999 99999999993
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.4e-22 Score=200.73 Aligned_cols=263 Identities=9% Similarity=-0.016 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
..++.+|.+++..|++++|+..|+++++..|.... ++..+|.++...|++++|+.++++++. ...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhH
Confidence 46788999999999999999999999998876543 489999999999999999999999976 1233344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
...++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence 4678899999999999999999999999998 6778899999999999999999999999999887
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISK 587 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 587 (729)
.+....++..+|......+++++|+.+|++++++.+.. ..++..+|.++...|+ +++|+..|++++++
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 33346789999944455569999999999999987665 5778899999999999 99999999999998
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004812 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (729)
..............++..+|.+|...|++++|+.+|++++++ +|+...++..++.+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence 755433222335578999999999999999999999999999 8888888888877665443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=2e-22 Score=209.30 Aligned_cols=241 Identities=11% Similarity=0.031 Sum_probs=214.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHh
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE 505 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 505 (729)
..|....++..+|.++...|++++|+..|++++.+ +|....+|+.+|.++..+|+ +++|+.+|++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 45778889999999999999999999999999998 89999999999999999997 99999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
.|....+|+++|.++..+|++++|+.+|++++.+.+.. ..+|.++|.++...|++++|+.+|++++
T Consensus 162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45567889999999999999999999999999998776 6889999999999999999999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--C
Q 004812 586 SKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEA-----VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG--R 657 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 657 (729)
++. +....+|+++|.++.. .|.+++| +.+|++++.+ +|+...+|.+++.++...| +
T Consensus 228 ~l~--------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred HhC--------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence 872 2346799999999999 5555777 5999999999 8999999999999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--------C-HhHHHHHHHHHH-Hhhccc
Q 004812 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG--------R-VRSRKAQSLETL-LDANSR 717 (729)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g--------~-~~~A~~~~l~~a-l~~~p~ 717 (729)
+++|++.++++ + .+|+...++..||.+|..+| + +++|+ ..|+++ ++++|.
T Consensus 292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTI 351 (382)
T ss_dssp CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGG
T ss_pred hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCch
Confidence 89998887665 2 36888899999999999985 2 58999 999999 999997
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=9.6e-23 Score=203.58 Aligned_cols=247 Identities=14% Similarity=0.092 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
..++.+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++.. ..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK------VNA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------cCc
Confidence 45678999999999999999999999987 6677778999999999999999999999999984 222
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
......++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 33447789999999999999999999999999987655 368899999999999999999999999875
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVV 669 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 669 (729)
.+....++..+|..+...+++++|+.+|++++++ .|....++..+|.++..+|+ +++|+..|++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 1224578899994555566999999999999999 88888999999999999999 999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++......+..+....++..||.+|...|++++|+ .+|+++++++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~ 253 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPT 253 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCcc
Confidence 98754322212235688999999999999999999 999999999998
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=4.4e-22 Score=206.76 Aligned_cols=254 Identities=11% Similarity=0.002 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 467 (729)
+..+.++..+|.++...|++++|+..|++++.+ .|....+|+.+|.++..+|+ +++|+.+|++++.+
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------ 161 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------ 161 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------
Confidence 344677999999999999999999999999875 56677899999999999997 99999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
+|....+|+++|.++..+|++++|+.+|++++++ .|....+|.++|.++..+|++++|+.+|++++++.
T Consensus 162 --~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 162 --QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999 55567899999999999999999999999999998
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC--CHHHH
Q 004812 548 NDAPGQQSTVAGIEAQMGVMYYM-LGNYSDS-----YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEA 619 (729)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A 619 (729)
+.. ..+|+++|.++.. .|.+++| +.+|++++.+. +....+|+++|.++...| ++++|
T Consensus 231 P~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--------P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 231 VRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred CCC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHccCccchHHH
Confidence 766 6889999999999 5555777 58899998862 224579999999999988 68999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HHHHHHHcCCCChhHHHHHHH
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------RLDDAIEILEFV-VGIREEKLGTANPDVDDEKRR 689 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~p~~~~~~~~ 689 (729)
++.++++ +. +|+...++..||.+|..+| .+++|+.+|+++ +++ +|.....|..
T Consensus 296 ~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~~ 358 (382)
T 2h6f_A 296 LNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWRY 358 (382)
T ss_dssp HHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHHH
T ss_pred HHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHHH
Confidence 8888776 44 7888889999999999985 258899999888 654 7999999999
Q ss_pred HHHHHHHh
Q 004812 690 LAELLKEA 697 (729)
Q Consensus 690 La~~~~~~ 697 (729)
++..+..+
T Consensus 359 ~~~~l~~~ 366 (382)
T 2h6f_A 359 IGRSLQSK 366 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.7e-21 Score=187.80 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=217.9
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
+..+.++..+|.++...|++++|+.+|+++++.. .. ..++..+|.++...|++++|+.++.+++.+.....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3467889999999999999999999999999986 22 25799999999999999999999999998776553
Q ss_pred -CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 427 -QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 427 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
..+....++..+|.++...|++++|+.+|++++.+ .+. +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 34445789999999999999999999999999997 343 46677888999999999999887
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
.+....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56678899999999999999999999999999987654 5788999999999999999999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
++. +....++..+|.++...|++++|+.+|++++++...... .|....++..++.+
T Consensus 201 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred HhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 862 123578999999999999999999999999999544432 36677777776654
No 45
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=4e-20 Score=193.94 Aligned_cols=313 Identities=11% Similarity=-0.001 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004812 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
...++..+|.++...|++++|+.++++++.... ..++.....++..+|.++...|++++|+.++++++.+.+..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 86 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-- 86 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence 356677889999999999999999999998752 22333455678899999999999999999999999997763
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004812 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 423 (729)
.+......++..+|.++...|++++|+.++++++.+.+.......+..+.++..+|.++...|++++|+.++.+++.+..
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 11123456788999999999999999999999999998876654455677889999999999999999999999998766
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENAL 501 (729)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al 501 (729)
..+... ...++..+|.++...|++++|..++++++.+..... .+..... ...++.++...|++++|..++++++
T Consensus 167 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 167 SYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp TSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 554333 557888999999999999999999999998754322 1211122 2245566889999999999999987
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
.... +. .......+..++.++...|++++|+..+++++...+.. +.......++..+|.++...|++++|...+
T Consensus 243 ~~~~----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 243 KPEF----AN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CCCC----TT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCC----Cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5421 11 11223357889999999999999999999999998875 444445567888999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004812 582 KNAISKLRAIG 592 (729)
Q Consensus 582 ~~al~~~~~~~ 592 (729)
++++.+....+
T Consensus 317 ~~al~~~~~~g 327 (373)
T 1hz4_A 317 LDALKLANRTG 327 (373)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcccc
Confidence 99999876543
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=4.2e-22 Score=213.69 Aligned_cols=385 Identities=13% Similarity=0.089 Sum_probs=271.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh---HHHHHHHHHhcccchhhccc
Q 004812 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY---NEAIPVLEQSIEIPVIEEGQ 301 (729)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 301 (729)
..+|..++..|+ +++|+.+|+++.+. + .+.+++.+|.+|...|++ ++|+.+|+++++..
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~------ 68 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL------G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS------ 68 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH------T-----CCTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC------
Confidence 467888999997 99999999999764 1 134577899999999998 99999999998541
Q ss_pred cchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004812 302 EHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
..+++.||.++...+ ++++|+.+|++++.. ....+++.||.+|...+...++...++..
T Consensus 69 ------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~ 132 (452)
T 3e4b_A 69 ------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----------GEGNTLIPLAMLYLQYPHSFPNVNAQQQI 132 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----------TCSSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 224888999777766 889999999999874 12238899999999888766665555554
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHH
Q 004812 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGF 453 (729)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 453 (729)
....+... +.+++.+|.+|...+.+++++............ .++. +++.+|.+|...| ++++|+.
T Consensus 133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 44443322 246899999999999777776664443332222 2232 7899999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-H-
Q 004812 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-Y- 527 (729)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~- 527 (729)
+|+++.+. .+..+..++.+|.+|... +++++|+.+|+++. .. ...++++||.+ +
T Consensus 201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence 99999987 566677779999999766 79999999999987 21 25678899998 4
Q ss_pred -HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004812 528 -ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-----NYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 528 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
...+++++|+.+|+++.+. + ...+++++|.+|. .| ++++|+.+|+++. . . ...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~ 319 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA 319 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence 4689999999999999854 2 1567889999998 66 9999999999987 1 1 347
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 004812 602 ALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 602 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 673 (729)
+++++|.+|.. ..++++|+.+|+++.+. ....+.++||.+|.. ..++.+|..+|+++.+.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 89999999887 34999999999999864 234578999999985 45899999999999863
Q ss_pred HHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHHHHhhccc
Q 004812 674 EKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 674 ~~~~~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+ ..+...++.+... .++..+|. ..+++.....+.
T Consensus 388 -----g~---~~a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~~ 424 (452)
T 3e4b_A 388 -----DT---PEANDLATQLEAPLTPAQRAEGQ-RLVQQELAARGT 424 (452)
T ss_dssp -----CC---HHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred -----CC---HHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhccc
Confidence 12 3445555555433 33555666 667666665544
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.88 E-value=4.3e-21 Score=192.38 Aligned_cols=268 Identities=17% Similarity=0.136 Sum_probs=220.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004812 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398 (729)
Q Consensus 319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 398 (729)
...|++++|+.+|++++++..+..+.++|....++..+|.++...|++++|+.+|++++.+.........+..+.++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45789999999999999999999888889999999999999999999999999999999998877666667788999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004812 399 GLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (729)
Q Consensus 399 g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (729)
|.++...|++++|+.+|.+++.+.... .+.+....++..+|.++...|++++|+.+|++++.++....+++++....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999876554 446888999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004812 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (729)
+..+|.++...|++++|+.+|++++.+......+...+.....+..++..+...+....+. .+..+...........+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999986542212223334456666777666655544443 345555555555445566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
...++..+|.+|...|++++|+.+|++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999864
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.7e-21 Score=187.05 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
..++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 457889999999999999999999999998 8899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004812 512 PPEEIASGLTDVSSIYESM-----------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (729)
.|....++..+|.++... |++++|+..|++++++.|.. ..++..+|.++...|++++|+..
T Consensus 69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHH
Confidence 445577899999999999 99999999999999997765 57889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (729)
|++++++. . ...++..+|.++...|++++|+..|++++++ +|+...++..+|.++..+|++++
T Consensus 141 ~~~al~~~------~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 141 LKQALALE------D---TPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHC------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred HHHHHhcc------c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence 99999972 1 3578899999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHH
Q 004812 661 AIEILEFVV 669 (729)
Q Consensus 661 A~~~~~~al 669 (729)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999998774
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=8.6e-20 Score=200.89 Aligned_cols=387 Identities=9% Similarity=-0.025 Sum_probs=274.6
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
|....+|..++. +...|++++|+..|++++... |... ..|..++..+...|++++|...|++++..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~---- 75 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK---- 75 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence 445667888887 478999999999999999986 3333 35899999999999999999999999988
Q ss_pred hCCCCchHHHHHHHHHH-HHHHhcCHHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---------hCC
Q 004812 342 LGETDPRVGETCRYLAE-AHVQALQFSEAQK----FCQMALDIHKDNGSPASLEEAADRRLMGLICET---------KGD 407 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~---------~g~ 407 (729)
.|. ...|..++. .....|+++.|.+ .|++++...+... .. ..+|...+..... .|+
T Consensus 76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence 564 457777775 4445688877766 6666665433221 11 2445566665554 789
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCC---CCh
Q 004812 408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGE---NHP 471 (729)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~~ 471 (729)
++.|..+|++++.. +.. .....+...+... ...+++..|...+............. -.|
T Consensus 146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 99999999998751 111 1122222222211 13456677776666543332222100 011
Q ss_pred -------hHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-------
Q 004812 472 -------AVASVFVRLADMYNRT----GKL----RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES------- 529 (729)
Q Consensus 472 -------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------- 529 (729)
.....|.......... ++. .+++..|++++.. .|....+|..+|.++..
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---------~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---------LGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhchhhhh
Confidence 1233444433332221 232 4788999999998 34447789999999886
Q ss_pred cchHH-------HHHHHHHHHHH-HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004812 530 MNELE-------QAIKLLQKALK-IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 530 ~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.|+++ +|+..|++++. +.+.. ..++..++.++...|++++|...|++++++ .+. ....
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~ 357 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI----EDI---DPTL 357 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----SSS---CHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----ccc---CchH
Confidence 78877 88899998886 44433 578899999999999999999999999985 111 1235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 680 (729)
+|..++.++.+.|++++|+.+|++|++. .|.....+...+.+ +...|++++|..+|+++++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-------- 421 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------- 421 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------
Confidence 8899999999999999999999999986 44444455555544 446999999999999999874
Q ss_pred hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|+...++..++.++...|+.++|. ..|++++...|.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~ 457 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSL 457 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence 677788999999999999999999 999999998653
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=8.1e-22 Score=211.49 Aligned_cols=353 Identities=14% Similarity=0.059 Sum_probs=250.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhCCC
Q 004812 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL---ENSLMCYTTGLEVQKQVLGET 345 (729)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~ 345 (729)
..+|..++..|++++|+.+|+++.+.. ++ .+++.||.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------~~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-------YS----EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------CC----TGGGTCC---------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-------CH----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence 347889999999999999999997642 11 2377899999999998 9999999999854
Q ss_pred CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
...+++.||.++...+ ++++|+.+|+++++.. .. .+++.||.+|...+...++...++....
T Consensus 68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3467889999766665 8899999999998832 11 2488999999988776555444433332
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004812 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG---KLRESKSYC 497 (729)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 497 (729)
.... ....+++.+|.+|...+.++++............. .++ .+++.||.+|...| ++++|+.+|
T Consensus 135 a~~~-----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 135 WQAA-----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTD---ICYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp HHHH-----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCT---THHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCH---HHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 2221 12357789999999999777776664433332211 133 38999999999999 999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-H--HH
Q 004812 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-Y--YM 570 (729)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~--~~ 570 (729)
+++.+. + +..+..+++||.+|... +++++|+.+|+++. +.. ..+++++|.+ + ..
T Consensus 203 ~~aa~~------g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 203 EAGVSR------G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHT------T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGG
T ss_pred HHHHHC------C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCC
Confidence 999987 2 22355668999999765 79999999999987 444 3678899998 4 56
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-----SINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
.+++++|+.+|+++.+. ....+++.+|.+|. .| ++++|+.+|+++. . ....++
T Consensus 264 ~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----------g~~~A~ 321 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----------REVAAD 321 (452)
T ss_dssp GCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----------TCHHHH
T ss_pred CCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----------CCHHHH
Confidence 89999999999999863 13578999999998 56 9999999999987 2 234588
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhccc
Q 004812 646 SNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 646 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~ 717 (729)
++||.+|.. ..++++|+.+|+++.+ +....+.++||.+|.. ..++.+|. .+|+++.+..+.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~~ 390 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCCH
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCCH
Confidence 999999887 4499999999999985 3345688999999985 45899999 999999877543
No 51
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.87 E-value=2.3e-20 Score=186.97 Aligned_cols=270 Identities=17% Similarity=0.221 Sum_probs=222.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
....|++++|+.+|+++++++.+..+.+++....++..+|.+|...|++++|+.+|++++.+..... +.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence 3467899999999999999999998888899999999999999999999999999999999986643 345678889999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (729)
.+|.++...|++++|+.+|++++.+.....+.. +....++..+|.++...|++++|+.+|++++.+.........+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999999999987654443 4667889999999999999999999999999998888776677788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
.++..+|.++...|++++|+.+|++++++..... +..++....++..++..+...+....+.. +..+.... +..+..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 247 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWY-KACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHH-HhcCCC
Confidence 9999999999999999999999999999866533 22345555577778877777666655554 44444433 344567
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
+|....++..||.+|...|++++|. ..|++++++.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 282 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAH-TLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhh
Confidence 8999999999999999999999999 9999998763
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=3.1e-21 Score=185.25 Aligned_cols=200 Identities=18% Similarity=0.139 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
|..+.++..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..|++++++.|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 344578899999999999999999999999988 44557889999999999999999999999999997765
Q ss_pred CCCCCcHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYML-----------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 619 (729)
..++..+|.++... |++++|+..|++++++. +....++..+|.++...|++++|
T Consensus 73 -------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 73 -------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp -------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHH
Confidence 57889999999999 99999999999999872 22457899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
+..|++++++ + +...++..+|.+|..+|++++|+..|++++++ +|+...++..+|.++...|+
T Consensus 138 ~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 138 EASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccC
Confidence 9999999999 6 67779999999999999999999999999987 68888999999999999999
Q ss_pred HhHHHHHHHHHHH
Q 004812 700 VRSRKAQSLETLL 712 (729)
Q Consensus 700 ~~~A~~~~l~~al 712 (729)
+++|+ ..|+++-
T Consensus 201 ~~~A~-~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAA-RAAALEH 212 (217)
T ss_dssp -------------
T ss_pred HHHHH-HHHHHHh
Confidence 99999 8888764
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1e-19 Score=182.76 Aligned_cols=278 Identities=12% Similarity=0.057 Sum_probs=216.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004812 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (729)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (729)
...+..|+|..|+..++++....|.. .......++.+|...|+++.|+..++. ..+....++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~~ 70 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVRM 70 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHHH
Confidence 34567899999999988765544332 124567889999999999999986643 13446678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004812 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (729)
++..+...+++++|+..+++++.. ..+|....+++.+|.++...|++++|+..|++ . ...
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~---------~~~ 130 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G---------DSL 130 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C---------CSH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C---------CCH
Confidence 999999999999999999988764 01477788999999999999999999999987 1 125
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
.++..+|.++..+|++++|+..|++++...+.. ........+..++...|++++|+.+|+++++.. +
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p---- 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----S---- 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----C----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----C----
Confidence 678899999999999999999999999885432 111111112233344589999999999999862 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHc
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEILEFVVGIREEKL 676 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~ 676 (729)
....+++.+|.++...|++++|+.+|++++.. +|+...++.++|.++...|++.+ +..++++++++.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~---- 265 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH---- 265 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 13578999999999999999999999999999 89999999999999999999986 568999999873
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 677 GTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
|++|... .+..+.+.++++.
T Consensus 266 -P~~~~~~-------d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 266 -RSHPFIK-------EYRAKENDFDRLV 285 (291)
T ss_dssp -TTCHHHH-------HHHHHHHHHHHHH
T ss_pred -CCChHHH-------HHHHHHHHHHHHH
Confidence 4444432 3455555666665
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=3.7e-19 Score=178.69 Aligned_cols=260 Identities=13% Similarity=0.067 Sum_probs=209.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (729)
...+..|+|..|+..+++.. ...|.. ......++.+|..+|+++.|+..++.. .+....++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a~~ 69 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVK------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQAVR 69 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSC------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHHHH
Confidence 34577899999999887542 234444 457788899999999999999866541 344678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 004812 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (729)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (729)
.++..+...+++++|+..+++++... ..|....+++.+|.++...|++++|+.++++ + ...
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~-------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~-------~~~ 130 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRS-------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G-------DSL 130 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSC-------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-------CSH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcc-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-------CCH
Confidence 99999999999999999999987641 0233466799999999999999999999987 1 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.++..+|.++..+|++++|+..|+++++.. +... .......+..++...|++++|+.+|+++++. +
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~ 196 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------C 196 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------C
Confidence 678899999999999999999999998862 1111 1111111223344568999999999999998 7
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|....++..+|.++..+|++++|+..|++++.+ +|+...++.++|.++...|+..++...+++++++++|+
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 888899999999999999999999999999987 68889999999999999999987543899999999997
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=2.7e-19 Score=180.32 Aligned_cols=250 Identities=11% Similarity=0.073 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (729)
++++|+.+|.++ |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 488888887776 4467788999999999999999988888878889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004812 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (729)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (729)
+|++++|+.+|++++.+....+ +....+.++.++|.+|... |++++|+.+|++++++.+.. ........++.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~l 164 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKC 164 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHH
Confidence 9999999999999999987654 2344578899999999996 99999999999999997652 2244456789999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004812 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (729)
|.++..+|++++|+.+|++++.+.+...........++..+|.++..+|++++|+.+|++++.+.+...... ....+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~~~l 241 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFL 241 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH---HHHHH
Confidence 999999999999999999999987665322234556788999999999999999999999998765443221 23455
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004812 604 NQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652 (729)
Q Consensus 604 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 652 (729)
..++..+. ..+++++|+..|++++.+ +|....++..+-..+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 66676665 457799999999888777 787776666655544
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.1e-17 Score=189.62 Aligned_cols=360 Identities=14% Similarity=0.087 Sum_probs=216.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHH---------------HH---------HHHHHHHHcCCh
Q 004812 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC---------------LH---------VIAAIYCSLGQY 281 (729)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~---------------~~---------~la~~~~~~g~~ 281 (729)
..++.+...|. +.+|++.+++++-- ..... .++..-.. +. .+|.++...|.|
T Consensus 990 ~~vKaf~~agl-p~EaieLLEKivl~-~s~fs--~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 990 VTVKAFMTADL-PNELIELLEKIVLD-NSVFS--EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHcC-CCccc--ccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 45677778886 99999999999822 11000 11111111 11 125556666666
Q ss_pred HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004812 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (729)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (729)
++|..+|+++-.. ...+...+...+++++|+++++++ ....+|..+|.++.
T Consensus 1066 EEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1066 EEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHH
Confidence 6666666665311 011222233455555555554432 23456666777777
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004812 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 441 (729)
..|++++|+..|.++ .+ ...+..++.++...|++++|+++|..+....... .+...+|.+
T Consensus 1117 ~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------~Idt~Lafa 1176 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------YVETELIFA 1176 (1630)
T ss_pred hCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------cccHHHHHH
Confidence 777777777766554 10 1345666677777777777777776665432110 111236666
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
|.+++++++ ++.| +. .+.. ..+..+|..+...|+|++|+.+|.++ ..|.
T Consensus 1177 YAKl~rlee-le~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~ny~ 1225 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFG 1225 (1630)
T ss_pred HHhhcCHHH-HHHH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hHHH
Confidence 666666653 3322 11 1222 34445777777777777777777664 1355
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.++.++..+|++++|++.+++|.. ..+|...+.++...|+|..|..+... +.. .+.
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~~d 1281 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------HAD 1281 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------CHH
Confidence 667777777777777777776622 14556666667777777777666553 211 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
.+..++..|...|.+++|+.+++.++.+ ++.....+..||.+|.+ -++..+++++|...+.+-+-+-
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r--- 1350 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR--- 1350 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH---
Confidence 5567888889999999999999999888 67777778778887765 4567777777777665410000
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
--+.+..|..+..+|.+-|+++.|+
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 0145677889999999999999998
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.1e-18 Score=174.12 Aligned_cols=226 Identities=13% Similarity=0.157 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhc
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 506 (729)
...+++.+|.++...|++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|+++++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 3456777888888888888888888877762 223567778888888 88888888888888766
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHH
Q 004812 507 PVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSY 578 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 578 (729)
+ ...++..+|.+|.. .+++++|+.+|++++... ...++..+|.+|.. .+++++|+
T Consensus 72 ---~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 ---N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp ---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ---C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 1 24567778888888 888888888888877641 14567778888888 88888888
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (729)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (729)
.+|+++++.- ...++..+|.+|.. .+++++|+.+|+++++. . ...++..+|.+|..
T Consensus 135 ~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------K--DSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHHc
Confidence 8888887631 23567778888887 78888888888888765 1 23577788888888
Q ss_pred ----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhccc
Q 004812 655 ----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 655 ----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~ 717 (729)
.+++++|+.+|+++++. .| ..+++.||.+|.. .+++++|+ .+|++++++.|+
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCCH
Confidence 88888888888888764 12 5677788888887 88888888 888888888776
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.4e-18 Score=173.44 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=196.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH----cCChHHHHHHHHHhc
Q 004812 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSI 292 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 292 (729)
.|+.+.+++.+|..++..|+ +++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~-----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACDL-----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 46778899999999999997 99999999999871 125678999999999 999999999999998
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hc
Q 004812 293 EIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----AL 364 (729)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 364 (729)
+.. ...+++.+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+
T Consensus 70 ~~~-----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 70 DLN-----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred HCC-----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence 763 13358999999999 99999999999999876 256789999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (729)
++++|+.+|+++++... ..++..+|.++.. .+++++|+.+|++++.. ....++..+|.
T Consensus 129 ~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~ 190 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN 190 (273)
T ss_dssp CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 99999999999998531 3568999999999 99999999999999753 12467899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 004812 441 TYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI 503 (729)
Q Consensus 441 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 503 (729)
+|.. .+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 9999 99999999999999986 23 6788999999999 99999999999999998
No 59
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=4e-19 Score=179.10 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (729)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (729)
++++|+.+|.++ |.+|...|++++|+.+|++++.+..... +.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 488888888765 5578889999999999999999987764 345568899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004812 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (729)
.|++++|+.+|++++.+.... .+....+.++.++|.+|... |++++|+.+|++++.+.+.. +.......++..+|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA 165 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 999999999999999998763 23555678999999999996 99999999999999999876 33344467889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
.++..+|++++|+.+|++++.+....... ......++..+|.++..+|++++|+.+|++++++...... ......+
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l 241 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFL 241 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHH
Confidence 99999999999999999999864322111 1123457899999999999999999999999987222110 1112245
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 646 SNLAGTYD--AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 646 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
..++..+. ..+++++|+..|++++.+ +|.....+..+-..+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 56677665 467788999888877643 677766666665554
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=1.4e-19 Score=177.10 Aligned_cols=221 Identities=16% Similarity=0.196 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..+..++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 44667889999999999999999999999986 6777899999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
.+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+
T Consensus 87 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 87 ---DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred ---CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 23346789999999999999999999999999986544 46788999999999999999999999998621
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++
T Consensus 157 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 157 --------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp --------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 13468899999999999999999999999998 78888899999999999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g 698 (729)
++ +|+...++..++.+....|
T Consensus 221 ~~--------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 221 DI--------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HH--------CTTCHHHHHHHTC------
T ss_pred cc--------CcchHHHHHHHHHHHhhcc
Confidence 87 5777777777777665444
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=3.6e-19 Score=166.03 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
+.+|+++|.+|..+|++++|+.+|++++++.|.. ..++..+|.+|...|++++|+..+.+++...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------- 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------- 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence 5689999999999999999999999999997765 5789999999999999999999999998752
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
+....++..+|.++...++++.|...+.+++.+ +|....++..+|.+|..+|++++|+..|++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----- 136 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI----- 136 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence 123578889999999999999999999999999 8888999999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccccCCCccccc
Q 004812 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELC 726 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~~~~~~l~~~ 726 (729)
+|....++..+|.+|..+|++++|+ ..|+++++++|+.....++++
T Consensus 137 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~a~~~lali 182 (184)
T 3vtx_A 137 ---KPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEEKKAKYELALV 182 (184)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTHHHHHHCSCCS
T ss_pred ---cchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCccCHHHHHHhh
Confidence 6888999999999999999999999 999999999998222344443
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6.8e-17 Score=183.30 Aligned_cols=352 Identities=15% Similarity=0.111 Sum_probs=261.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHH
Q 004812 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK 307 (729)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 307 (729)
|..+...|. |++|..+|+++... . ..+...+...+++++|+++++++-.
T Consensus 1056 A~Iai~lgl-yEEAf~IYkKa~~~-------------~---~A~~VLie~i~nldrAiE~Aervn~-------------- 1104 (1630)
T 1xi4_A 1056 ANIAISNEL-FEEAFAIFRKFDVN-------------T---SAVQVLIEHIGNLDRAYEFAERCNE-------------- 1104 (1630)
T ss_pred HHHHHhCCC-HHHHHHHHHHcCCH-------------H---HHHHHHHHHHhhHHHHHHHHHhcCC--------------
Confidence 777777776 77777777776311 1 1123334488999999999987622
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004812 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (729)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (729)
..+|+.+|.++...|++++|+..|.++ +....|..+|.++.+.|+|++|+++|..+.+..+...
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--- 1168 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--- 1168 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---
Confidence 235999999999999999999999774 3457788899999999999999999999988764322
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (729)
+-..+|.+|.+++++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1169 ------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1169 ------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred ------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 13358999999999885 444421 2223 34567999999999999999999885
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
..|..+|.+|.++|++++|++.+++|.. ..+|...+.++...|+|..|..+... +...
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~ 1279 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 1279 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC
Confidence 3678899999999999999999998832 35788999999999999999988764 3222
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 004812 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR--YSINEAVELFEE 625 (729)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~ 625 (729)
+..+..++..|...|.|++|+.+++.++.+- ......+..+|.+|.+- ++..+++++|..
T Consensus 1280 ----------~deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1280 ----------ADELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2345578999999999999999999998862 22445677777777654 577888888888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH------HHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004812 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG------IREEKLGTANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~p~~~~~~~~La~~~~~~g 698 (729)
.+.+-+-+. --+....|..+..+|.+-|+++.|+...-.... .+...+ ..+..++.+++....|....
T Consensus 1342 rini~k~~r---~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1342 RVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hcccchHhH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHHhhC
Confidence 777611000 115566888999999999999999954443321 122222 24556778888888887555
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=3.7e-19 Score=177.63 Aligned_cols=258 Identities=14% Similarity=0.019 Sum_probs=202.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (729)
Q Consensus 399 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (729)
+......|++++|+..|++++... ....+....++..+|.++...|++++|+.+|++++.+ .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 334445688999999999887531 1234678899999999999999999999999999998 677889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 004812 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (729)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (729)
.+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++.+.+.. .
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~ 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC---------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence 99999999999999999999999983 2335789999999999999999999999999986554 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
..... ..++...|++++|+.++.+++... +... ....++.++...++.++|+..+++++...... .
T Consensus 146 ~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 FRSLW-LYLAEQKLDEKQAKEVLKQHFEKS----DKEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp HHHHH-HHHHHHHHCHHHHHHHHHHHHHHS----CCCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred HHHHH-HHHHHHhcCHHHHHHHHHHHHhcC----Ccch-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 22222 334467799999999999988752 1111 12347778888899999999999988763321 2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
|....++..+|.+|...|++++|+.+|++++.+ +|.... ..+.++...|++++|+ ..|
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~---~~~~~~~~l~~~~~a~-~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFV---EHRYALLELSLLGQDQ-DDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTCH---HHHHHHHHHHHHHHC-----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhHH---HHHHHHHHHHHHHhhH-HHH
Confidence 344789999999999999999999999999975 354322 3377888899999998 666
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=2.3e-18 Score=169.45 Aligned_cols=209 Identities=15% Similarity=0.103 Sum_probs=186.0
Q ss_pred ChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 470 HPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 470 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
+|.. +.++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++...+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4554 889999999999999999999999999998 233467899999999999999999999999999865
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
.. ..++..+|.++...|++++|+.+|++++. .. ..+....++..+|.++...|++++|+.+|+++++
T Consensus 103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DT-LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CT-TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----Cc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 57788999999999999999999999886 11 1233567899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (729)
. .|....++..+|.++...|++++|+.+|++++.. .|....++..++.++...|++++|. ..+
T Consensus 170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~ 232 (252)
T 2ho1_A 170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG 232 (252)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence 8 7777889999999999999999999999999864 5677788999999999999999999 999
Q ss_pred HHHHhhccc
Q 004812 709 ETLLDANSR 717 (729)
Q Consensus 709 ~~al~~~p~ 717 (729)
+++++.+|+
T Consensus 233 ~~~~~~~p~ 241 (252)
T 2ho1_A 233 LQLKRLYPG 241 (252)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHCCC
Confidence 999999997
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=9e-19 Score=174.82 Aligned_cols=259 Identities=13% Similarity=0.039 Sum_probs=203.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004812 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (729)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (729)
++..+...|++++|+..|++++... +..++....+++.+|.++...|++++|+.+|++++.. +|...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 77 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP 77 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred eeeccCccchHHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence 3444455688999999999999873 2223345677999999999999999999999999998 68888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
.++..+|.++...|++++|+.+|++++.+.+... .++..+|.++...|++++|+.+|++++... +..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~- 145 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------YAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP- 145 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence 9999999999999999999999999999876542 569999999999999999999999998642 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
.....++ ++...|++++|+.++.+++.. .+..... ..++.++...++.++|+..+++++.....
T Consensus 146 --~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---- 209 (275)
T 1xnf_A 146 --FRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTS---- 209 (275)
T ss_dssp --HHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred --HHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence 2223333 446679999999999999886 2322223 34788888899999999999998766332
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (729)
..+....++..+|.++...|++++|+.+|++++.+.+.. +...+.++...|++++|+..|
T Consensus 210 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 -LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHHC----
T ss_pred -ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHhhHHHH
Confidence 133447889999999999999999999999999875433 123477888889999998876
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=5.8e-18 Score=163.15 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=185.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|....++..+|.++...|++++|+.+|+++++.. +....++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 57788999999999999999999999999999983 333678999999999999999999999999998654
Q ss_pred CCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
. ..++..+|.++... |++++|+.+|++++. .+. .+....++..+|.++...|++++|+.+|+++++
T Consensus 75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DPT-YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----STT-CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----CcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56788999999999 999999999999987 111 223467899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQS 707 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (729)
. .|....++..+|.++...|++++|+.++++++.+. | .....+..++.++...|+.++|. .+
T Consensus 142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~ 204 (225)
T 2vq2_A 142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAY-EY 204 (225)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence 8 78888899999999999999999999999999874 5 56667888999999999999999 99
Q ss_pred HHHHHhhccc
Q 004812 708 LETLLDANSR 717 (729)
Q Consensus 708 l~~al~~~p~ 717 (729)
++.++..+|+
T Consensus 205 ~~~~~~~~p~ 214 (225)
T 2vq2_A 205 EAQLQANFPY 214 (225)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9999999987
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=4.3e-19 Score=173.52 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
...+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++...+..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 90 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90 (243)
T ss_dssp ----------------------CCTTHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345678899999999999999999999999986 33346789999999999999999999999999886543
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
..++..+|.++...|++++|+.+|+++++..+ ....++..+|.++...|++++|+.+|++++..
T Consensus 91 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 154 (243)
T 2q7f_A 91 -------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL- 154 (243)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred -------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 57888999999999999999999999998631 12467899999999999999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
.|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|. ..|++
T Consensus 155 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~ 218 (243)
T 2q7f_A 155 -------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKAL-EMLDK 218 (243)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHH-HHHHH
T ss_pred -------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence 7888889999999999999999999999999987 5777889999999999999999999 99999
Q ss_pred HHhhccc
Q 004812 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
+++++|+
T Consensus 219 ~~~~~p~ 225 (243)
T 2q7f_A 219 AIDIQPD 225 (243)
T ss_dssp HHHHCTT
T ss_pred HHccCcc
Confidence 9999998
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=5.3e-18 Score=166.90 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
.+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|+++++..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------ 101 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------ 101 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence 3788999999999999999999999999988 67778899999999999999999999999999982
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (729)
+....++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+|++++...
T Consensus 102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 171 (252)
T 2ho1_A 102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-- 171 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 23367889999999999999999999999987 12334456788899999999999999999999998862
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+ ....++..+|.++...|++++|+.+|++++.. .|....++..++.++...|++++|..+++++++
T Consensus 172 --~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 172 --R----NQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp --S----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 12567889999999999999999999999887 677778899999999999999999999999998
Q ss_pred H
Q 004812 671 I 671 (729)
Q Consensus 671 ~ 671 (729)
+
T Consensus 238 ~ 238 (252)
T 2ho1_A 238 L 238 (252)
T ss_dssp H
T ss_pred H
Confidence 7
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.9e-17 Score=159.57 Aligned_cols=207 Identities=14% Similarity=0.105 Sum_probs=179.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
..+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-- 72 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence 35667788999999999999999999999999998 67778899999999999999999999999999982
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 507 PVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
+....++..+|.++... |++++|+.++++++. . +..+....++..+|.++...|++++|+.+|++++
T Consensus 73 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 73 -------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp -------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33356789999999999 999999999999987 1 2234456788999999999999999999999998
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHH
Q 004812 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEI 664 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 664 (729)
+..+ ....++..+|.++...|++++|+.+|++++.. .| ....++..++.++...|++++|..+
T Consensus 141 ~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 141 AAQP--------QFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHST--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCC--------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8621 13568899999999999999999999999998 56 6677888999999999999999999
Q ss_pred HHHHHHH
Q 004812 665 LEFVVGI 671 (729)
Q Consensus 665 ~~~al~~ 671 (729)
++.++..
T Consensus 205 ~~~~~~~ 211 (225)
T 2vq2_A 205 EAQLQAN 211 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988765
No 70
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=1.6e-17 Score=168.56 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=194.0
Q ss_pred hCCHHHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 405 KGDHEAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
.|++++|.++++++...... .++.......+...|.+|...|++++|+.+|.+++.+..... +....+.++.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 46677788888777765442 223334455666678899999999999999999999988764 34566889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
+|.+|..+|++++|+.+|+++++++... .+....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~ 156 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE 156 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence 9999999999999999999999998773 2355668899999999999 99999999999999999875 55455678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
++.++|.+|..+|++++|+.+|++++.+.+.... ......++..+|.++..+|++++|+.+|++++ +.... . ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~-~--~~ 230 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF-S--GS 230 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS-T--TS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC-C--CC
Confidence 8999999999999999999999999999877544 23345688999999999999999999999999 62111 0 11
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHH
Q 004812 640 DTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
.....+..++..+ ..|+.+.+..
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2233556667666 5677665555
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=1.5e-18 Score=187.34 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=183.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 427 QDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
..+..+.+++.+|.++...|++ ++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-- 166 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-- 166 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4556778999999999999999 9999999999998 7888999999999999999999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc-----
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----- 571 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----- 571 (729)
.|. ..++..+|.++... |++++|+.+|++++++.+.. ..++..+|.+|...
T Consensus 167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhc
Confidence 222 47899999999999 99999999999999997665 57889999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004812 572 ---GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (729)
Q Consensus 572 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (729)
|++++|+.+|++++++.+. ......++..+|.+|...|++++|+.+|++++++ +|+...++..+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l 298 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQRE 298 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 9999999999999997210 0135689999999999999999999999999999 89999999999
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 004812 649 AGTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~a 668 (729)
+.++..+|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999877654
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=4.1e-18 Score=158.84 Aligned_cols=167 Identities=17% Similarity=0.294 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
.+.+|+++|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..+.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence 4678999999999999999999999999999 45557889999999999999999999999999876554
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
..++..+|.++...++++.|...+.+++.+. +....++..+|.++...|++++|+..|++++++
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 73 -----AEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 5778899999999999999999999998862 223578899999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+|....++..+|.+|..+|++++|+.+|++++++
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999986
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=1.1e-18 Score=188.38 Aligned_cols=217 Identities=16% Similarity=0.153 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 004812 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (729)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (729)
....+++++..+..... ..+..+.+++.+|.++...|++ ++|+.+|++++++ .|....++..+|.+|..
T Consensus 80 ~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHH
Confidence 33344444444443322 2567889999999999999999 9999999999999 44457789999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004812 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (729)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (729)
.|++++|+.+|++++++.+. ..++..+|.++... |++++|+.+|++++++. +...
T Consensus 150 ~g~~~~A~~~~~~al~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 213 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDG 213 (474)
T ss_dssp HTCHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred cCCHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCH
Confidence 99999999999999987422 37889999999999 99999999999999872 2245
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004812 601 VALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHP---DTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (729)
Q Consensus 601 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (729)
.+|..+|.+|... |++++|+.+|++++++ +| ....++.++|.+|..+|++++|+.+|++++
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7899999999999 9999999999999999 78 899999999999999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 670 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
++ +|+...++..++.++...|++++|+ ..+.+
T Consensus 286 ~l--------~p~~~~a~~~l~~~~~~lg~~~eAi-~~~~~ 317 (474)
T 4abn_A 286 AL--------DPAWPEPQQREQQLLEFLSRLTSLL-ESKGK 317 (474)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHHHHHHHHH-HHTTT
T ss_pred Hh--------CCCCHHHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence 87 6888899999999999999999999 75543
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=1.8e-18 Score=193.63 Aligned_cols=173 Identities=21% Similarity=0.304 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.|..+.++++||.+|..+|++++|+.+|++++++.++. ..++.++|.+|..+|++++|+.+|++++++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---- 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS---- 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 56778999999999999999999999999999997665 6889999999999999999999999999872
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+....++.++|.++..+|++++|+++|++++++ +|+...++.+||.+|..+|++++|+..|++++++
T Consensus 74 ----P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 74 ----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 235689999999999999999999999999999 8999999999999999999999999999999998
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 673 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...++.+||.+|...|++++|. +.+++++++.|+
T Consensus 141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~ 177 (723)
T 4gyw_A 141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVAD 177 (723)
T ss_dssp -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHH
T ss_pred -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChh
Confidence 6889999999999999999999999 999999999987
No 75
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.79 E-value=2e-17 Score=167.99 Aligned_cols=247 Identities=15% Similarity=0.099 Sum_probs=198.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004812 363 ALQFSEAQKFCQMALDIHKDNG---SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (729)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (729)
.|++++|..+++++.+..+... ..+....+..+...|.+|...|++++|+.+|.+++.+....++....+.++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778888888888887766421 1222333455666788999999999999999999999988888888899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004812 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (729)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (729)
.+|..+|++++|+.+|++++.++.... +....+.++.++|.+|.. |++++|+.+|++++.+.... .+......+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~~~~~~~ 157 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERLRQAAEL 157 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CChhHHHHH
Confidence 999999999999999999999987654 234567899999999999 99999999999999998763 234556789
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 599 (729)
+.++|.+|..+|++++|+.+|++++.+.+.. +.......++..+|.++..+|++++|+.+|++++ +.+.... ...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---~~e 232 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---SED 232 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT---SHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC---CHH
Confidence 9999999999999999999999999999877 3334455678899999999999999999999998 5432221 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINEAVE 621 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~ 621 (729)
...+..++..+ ..|+.+.+..
T Consensus 233 ~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 233 CAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHH
Confidence 44566666655 5677655544
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=8.3e-18 Score=188.28 Aligned_cols=174 Identities=21% Similarity=0.287 Sum_probs=161.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.|..+.++.+||.+|..+|++++|+.+|++++++ .|....++.+||.+|..+|++++|+.+|++++++.++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6889999999999999999999999999999999 4455789999999999999999999999999999776
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. +.+++++|.+|..+|++++|+.+|++++++. +....++.++|.+|..+|++++|+.+|++++++
T Consensus 76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 6889999999999999999999999999872 234689999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+|+...++.+||.+|..+|++++|++.|++++++....
T Consensus 141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 89999999999999999999999999999999987654
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=9.4e-17 Score=158.93 Aligned_cols=224 Identities=15% Similarity=0.144 Sum_probs=180.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.+.....++.+|..++..|++++|+..|++++.. .++++....+++.+|.+|...|++++|+..|++++.....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence 4455678899999999999999999999999987 2234444899999999999999999999999999999432
Q ss_pred CCCCChHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 508 VPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
.+....+++.+|.++.. .|++++|+..|++++...|.... + ..+..
T Consensus 85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~--------------~~a~~ 138 (261)
T 3qky_A 85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------V--------------DDATQ 138 (261)
T ss_dssp -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------H--------------HHHHH
T ss_pred -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------H--------------HHHHH
Confidence 44567889999999999 99999999999999998776521 1 11111
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----
Q 004812 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI---- 655 (729)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 655 (729)
.+..... .....+..+|.+|...|++++|+..|+++++. .|+++....+++.+|.+|..+
T Consensus 139 ~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 139 KIRELRA-----------KLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence 1111111 13345788999999999999999999999998 222333778999999999977
Q ss_pred ------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 656 ------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 656 ------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
|++++|+..|+++++.. |++|....+...++.++...++++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999875 777888889999999999888877654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.75 E-value=2.4e-17 Score=159.59 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
..++.+|.++...|++++|+.+|++++.+ .| ....+++.+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 67889999999999999999999999998 44 55678888999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
.|....++..+|.+|..+|++++|+.+|++++.+.+........++.++..+|.++...|++++|+.+|++++++
T Consensus 72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---- 146 (228)
T 4i17_A 72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---- 146 (228)
T ss_dssp -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence 445678899999999999999999999999999876552222234467899999999999999999999999875
Q ss_pred CCCCChH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCChhHH
Q 004812 592 GERKSAF--FGVALNQMGLACVQRYSI---------------------------NEAVELFEEARSILEQECGPYHPDTL 642 (729)
Q Consensus 592 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (729)
.+. ...++..+|.+|...|+. ++|+.+|++++++ +|+..
T Consensus 147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~ 214 (228)
T 4i17_A 147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT 214 (228)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence 233 567899999999988888 8999999999998 78888
Q ss_pred HHHHHHHHHHH
Q 004812 643 GVYSNLAGTYD 653 (729)
Q Consensus 643 ~~~~~la~~~~ 653 (729)
.+...++.+..
T Consensus 215 ~~~~~l~~i~~ 225 (228)
T 4i17_A 215 EIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 78887777654
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.5e-16 Score=160.01 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHhcCCCCCCh
Q 004812 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-------TGKL-------RESKSYCENALR-IYEKPVPGVPP 513 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 513 (729)
++|+..|++++.. .|....+|+.+|.++.. .|++ ++|+..|++++. + .
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------L 95 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---------T
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---------C
Confidence 7899999999998 68889999999999874 5886 899999999998 5 3
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
|....+|..+|.++...|++++|+..|++++++.+..+ ..++..+|.++...|++++|+..|+++++..+
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p---- 165 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR---- 165 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----
Confidence 34467899999999999999999999999998654321 12788999999999999999999999987521
Q ss_pred CCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 594 RKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
. ...++...+.+... .|++++|+.+|+++++. +|....++..++.++..+|++++|+.+|++++...
T Consensus 166 ~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 166 T----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp C----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred C----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 1 12445555555433 79999999999999998 78888899999999999999999999999999731
Q ss_pred HHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 673 EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 673 ~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...| .....+..++.++...|+.++|. ..++++++.+|+
T Consensus 234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 -----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFRE 273 (308)
T ss_dssp -----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHccc
Confidence 1134 36778889999999999999999 999999999997
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=1.1e-16 Score=154.85 Aligned_cols=187 Identities=11% Similarity=0.124 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004812 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
+..++.+|.++...|++++|+.+|++++++... ....++..+|.++...|++++|+.+|++++...+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 75 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--- 75 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---
Confidence 478999999999999999999999999999421 123567789999999999999999999999775443
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
..++..+|.+|..+|++++|+.+|++++++.+. ++ ...+.++..+|.++...|++++|+.+|++++++
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~- 146 (228)
T 4i17_A 76 ----ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG----NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV- 146 (228)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-
Confidence 678999999999999999999999999987321 11 113367999999999999999999999999998
Q ss_pred HHhcCCCChh--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHHcCCCCh
Q 004812 631 EQECGPYHPD--TLGVYSNLAGTYDAIGRL---------------------------DDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 631 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~p 681 (729)
+|+ ...++..+|.+|..+|+. ++|+.+|++++++ +|
T Consensus 147 -------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p 211 (228)
T 4i17_A 147 -------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SP 211 (228)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred -------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CC
Confidence 899 889999999999999988 8899999999987 57
Q ss_pred hHHHHHHHHHHHHH
Q 004812 682 DVDDEKRRLAELLK 695 (729)
Q Consensus 682 ~~~~~~~~La~~~~ 695 (729)
+...+...|+.+..
T Consensus 212 ~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 212 NRTEIKQMQDQVKA 225 (228)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776643
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.72 E-value=6.6e-16 Score=152.80 Aligned_cols=223 Identities=15% Similarity=0.149 Sum_probs=177.4
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (729)
+..+..++.+|..++..|+|++|+..|++++... +.++ ....+++.+|.+|..+|++++|+..|++++...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--- 82 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIY--- 82 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence 3446779999999999999999999999999885 3332 124569999999999999999999999999983
Q ss_pred hCCCCchHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 004812 342 LGETDPRVGETCRYLAEAHVQ--------ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (729)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 413 (729)
++++....+++.+|.++.. .|++++|+..|++++...|..... ...+..
T Consensus 83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~a~~~------------- 139 (261)
T 3qky_A 83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------DDATQK------------- 139 (261)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------HHHHHH-------------
T ss_pred --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------HHHHHH-------------
Confidence 2246778999999999999 999999999999999988765421 111111
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc------
Q 004812 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT------ 487 (729)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 487 (729)
+... .......++.+|.+|...|++++|+..|++++... ++.+....++..+|.+|..+
T Consensus 140 -~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 140 -IREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp -HHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred -HHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence 1111 11223457889999999999999999999999872 23344788999999999977
Q ss_pred ----CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004812 488 ----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (729)
Q Consensus 488 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (729)
|++++|+..|+++++... +++....+...++.++...++++++.
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFP------DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hcccchHHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999943 35566778888899988888877654
No 82
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.3e-14 Score=155.28 Aligned_cols=241 Identities=17% Similarity=0.173 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004812 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS---------LEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (729)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 422 (729)
+....|..+...|+|++|++.|.++++..+...+... .....++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455677888999999999999999998776544211 2234568899999999999999999999999888
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (729)
...+.......+...++.++...|++++|+.++++++....... +.+..+.++..+|.+|...|+|.+|+.++++++.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 77766666667788899999999999999999999999988765 3566788999999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (729)
..... .+.+..+.++..++.+|...|++++|..++++++.+.+.........+.++..+|.++...|+|.+|..+|.
T Consensus 164 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 164 EFKKL---DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHTTS---SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHhc---ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88773 446678899999999999999999999999999999988855555677888999999999999999999999
Q ss_pred HHHHHHHHhCCCCCh
Q 004812 583 NAISKLRAIGERKSA 597 (729)
Q Consensus 583 ~al~~~~~~~~~~~~ 597 (729)
+++............
T Consensus 241 ~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 241 ESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHTTTSSCH
T ss_pred HHHHHhhhhhhhhhH
Confidence 999998877665544
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.70 E-value=4e-13 Score=148.51 Aligned_cols=443 Identities=8% Similarity=-0.037 Sum_probs=295.4
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCC---hHHHH
Q 004812 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ---YNEAI 285 (729)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~ 285 (729)
.++.....+|.....|..++......+. +..+...|++++..+ |.....|...+..-...++ ++.+.
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3445556789999999999999888886 999999999999987 3345567667777788888 99999
Q ss_pred HHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCH----HHHH----HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004812 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL----ENSL----MCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (729)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (729)
.+|++++..... +.+. ..|..........++. +++. ..|++|+.. .|.-++....+|....
T Consensus 124 ~lfeRal~~~~~---~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 124 PVLARCLSKELG---NNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYL 192 (679)
T ss_dssp HHHHHHTCSSSC---CCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHhcCC---CCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHH
Confidence 999999987410 1221 2344444444444443 3444 556665554 3441233344554444
Q ss_pred HHHH---------HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------------HHHHhCCHHHHHHHH
Q 004812 358 EAHV---------QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL-------------ICETKGDHEAALEHL 415 (729)
Q Consensus 358 ~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~-------------~~~~~g~~~~A~~~~ 415 (729)
.... .+++++.+..+|++++.+ |.. .. ...+..... +-....+|..|...+
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~----~~--~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMD----CL--ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLY 265 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCS----SH--HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccH----HH--HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHH
Confidence 3322 345678888999988853 111 01 111111111 011122344454444
Q ss_pred HHHHHHHHhCCC--------------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCC
Q 004812 416 VLASMTMIANDQ--------------------DAEVASVDCSIGDTYLSLS-------RYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 416 ~~al~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~ 468 (729)
............ .......|......-...+ ........|++++..
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~------- 338 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH------- 338 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-------
Confidence 332222111110 1122334444333322221 133456789999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.|....+|...+..+...|+.++|. ..|++|+.... .....+..++.+....|++++|...|++++...
T Consensus 339 -~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 339 -VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp -TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6888999999999999999999997 99999998732 235668888999999999999999999999875
Q ss_pred Hh--------CCCC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 004812 548 ND--------APGQ-------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ 612 (729)
Q Consensus 548 ~~--------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 612 (729)
+. .+.. ......+|...+.+....|+.+.|...|.+|++.. ... ...+|...|.+...
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~----~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLV----TPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGS----CTHHHHHHHHHHHT
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHH
Confidence 31 1110 00234578888888888999999999999998741 111 12355566666666
Q ss_pred cC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004812 613 RY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (729)
Q Consensus 613 ~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 691 (729)
.+ +++.|..+|+.+++. .|.....+...+......|+.+.|..+|++++... +........+....
T Consensus 482 ~~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVI 548 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Confidence 65 499999999999998 45556667788888889999999999999999652 11125667888888
Q ss_pred HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..-...|+.+.+. ..++++++..|+
T Consensus 549 ~fE~~~G~~~~~~-~v~~R~~~~~P~ 573 (679)
T 4e6h_A 549 FFESKVGSLNSVR-TLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTCCSHHHH-HHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 8899999999999 999999999997
No 84
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=4.9e-15 Score=150.36 Aligned_cols=227 Identities=9% Similarity=0.048 Sum_probs=185.7
Q ss_pred HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHHHhCCCC
Q 004812 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM-------LGQL-------ENSLMCYTTGLE-VQKQVLGETD 346 (729)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~ 346 (729)
++|+..|++++... +.++ .+|+.+|.++.. .|++ ++|+..|++|+. + +
T Consensus 33 ~~a~~~~~~al~~~-----p~~~----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-----GHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L 95 (308)
T ss_dssp HHHHHHHHHHHHHH-----TTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred HHHHHHHHHHHHHc-----CCCH----HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence 78999999999876 4444 348888888764 5885 899999999998 6 6
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
|....+|..+|.++...|++++|...|++++++.+... ..+|..+|.++...|++++|+..|++++..
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----- 163 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARED----- 163 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc-------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence 88889999999999999999999999999998765432 126899999999999999999999999753
Q ss_pred CChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 427 QDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
.+....++...+.+... .|++++|+.+|+++++. .|....++..++.++...|++++|+.+|++++....
T Consensus 164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 12223455555555433 79999999999999998 577789999999999999999999999999998511
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (729)
- ++.....+|..++.++...|++++|..+++++++..|+..
T Consensus 235 l-----~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 235 L-----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp S-----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred C-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 0 1123466788899999999999999999999999988753
No 85
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=1.3e-17 Score=170.57 Aligned_cols=335 Identities=15% Similarity=0.105 Sum_probs=161.6
Q ss_pred HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004812 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (729)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (729)
.+....|++++|.+++++.- ++ .+|..||.++...|++++|+..|.++ .....
T Consensus 11 ~ll~~~~~ld~A~~fae~~~----------~~----~vWs~La~A~l~~g~~~eAIdsfika-------------~D~~~ 63 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN----------EP----AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC----------Ch----HHHHHHHHHHHHcCCHHHHHHHHHcC-------------CCHHH
Confidence 34457788999999998871 11 25999999999999999999999763 12347
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004812 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (729)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (729)
+..++..+...|+|++|+.+++.+++..+. +.+...++.+|.+.|++.++.+++. .|..
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~- 122 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFIN-----------GPNN- 122 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTT-----------CC---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHc-----------CCcH-
Confidence 788888999999999999999988875322 2346778999999999999988774 1222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
.++..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------- 175 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN----------- 175 (449)
T ss_dssp --------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----------
Confidence 48999999999999999999999865 357889999999999999999999982
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
...+|..++.++...|+++.|..+..... .. +.-...+..+|.+.|++++|+.++++++.+-
T Consensus 176 ---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~----------ad~l~~lv~~Yek~G~~eEai~lLe~aL~le---- 237 (449)
T 1b89_A 176 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH----------ADELEELINYYQDRGYFEELITMLEAALGLE---- 237 (449)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----
T ss_pred ---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC----------HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc----
Confidence 14678888999999999999966655411 11 2223468889999999999999999998752
Q ss_pred CCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHHHcCChHHHHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSILEQECGPYHP-----DTLGVYSNLAGTYDAIGRLDDAIEIL 665 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~ 665 (729)
.....++..+|.+|.+ .++..++++.|...+.+ .+ +....|..+..+|...++++.|+...
T Consensus 238 ----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--------~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 238 ----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--------HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 1134577778877765 45677788877776666 33 44557889999999999999998765
Q ss_pred HHHHH------HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH--hhccc
Q 004812 666 EFVVG------IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL--DANSR 717 (729)
Q Consensus 666 ~~al~------~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al--~~~p~ 717 (729)
-+... .+..+.. .+.+.+.+++....|. +....++ ..|..++ .+|+.
T Consensus 306 ~~h~~~a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l-~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 306 MNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLL-NDLLMVLSPRLDHT 360 (449)
T ss_dssp HHSTTTTCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGH-HHHHHHHGGGCCHH
T ss_pred HhCChhhhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHH-HHHHHHHHhccCcH
Confidence 54321 0111100 3455778888887777 4555667 7777777 56654
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=2.2e-15 Score=139.90 Aligned_cols=172 Identities=17% Similarity=0.238 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
......+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 72 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADA----- 72 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Confidence 3456788999999999999999999999988764432 5788899999999999999999999999862
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 73 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 139 (186)
T 3as5_A 73 ---PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-- 139 (186)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--
Confidence 123568899999999999999999999999998 7888889999999999999999999999999987
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 674 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.|....++..+|.++...|++++|. ..+++++..+|+
T Consensus 140 ------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 ------RPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEG 176 (186)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHC
T ss_pred ------CccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence 4677889999999999999999999 999999999997
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=7.7e-16 Score=157.63 Aligned_cols=379 Identities=12% Similarity=0.086 Sum_probs=180.4
Q ss_pred ccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCC
Q 004812 201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ 280 (729)
Q Consensus 201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 280 (729)
++...|.+.+... ++| .+|..+|..+...|+ +++|++.|.++- + ...+..++.++...|+
T Consensus 17 ~~ld~A~~fae~~--~~~---~vWs~La~A~l~~g~-~~eAIdsfika~-----------D---~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 17 GNLDRAYEFAERC--NEP---AVWSQLAKAQLQKGM-VKEAIDSYIKAD-----------D---PSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC--CCh---HHHHHHHHHHHHcCC-HHHHHHHHHcCC-----------C---HHHHHHHHHHHHhCCC
Confidence 3344444444444 333 488999999999997 999999997641 1 3357778889999999
Q ss_pred hHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004812 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (729)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (729)
|++|+.+++.+++.. ++ ..+...++.+|.++|++.++..+++. |.. .+|..+|..+
T Consensus 77 ~EeAi~yl~~ark~~-----~~-----~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~ 132 (449)
T 1b89_A 77 WEELVKYLQMARKKA-----RE-----SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRC 132 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC-------------C-------------
T ss_pred HHHHHHHHHHHHHhC-----cc-----chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHH
Confidence 999999999888642 11 22366799999999999998877742 333 4999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004812 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (729)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (729)
...|.|++|..+|.++ . .+..+|.++..+|++++|++.++++. ...+|..+..
T Consensus 133 ~~~g~yeeA~~~Y~~a--------~--------n~~~LA~~L~~Lg~yq~AVea~~KA~-----------~~~~Wk~v~~ 185 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV--------S--------NFGRLASTLVHLGEYQAAVDGARKAN-----------STRTWKEVCF 185 (449)
T ss_dssp ----CTTTHHHHHHHT--------T--------CHHHHHHHHHTTTCHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHh--------h--------hHHHHHHHHHHhccHHHHHHHHHHcC-----------CchhHHHHHH
Confidence 9999999999999976 1 28899999999999999999999881 2467788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004812 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (729)
++...|+++.|..+..... . +|.. ...+..+|.+.|++++|+.++++++.+- +....++
T Consensus 186 aCv~~~ef~lA~~~~l~L~-~--------~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le---------~ah~~~f 244 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLHIV-V--------HADE---LEELINYYQDRGYFEELITMLEAALGLE---------RAHMGMF 244 (449)
T ss_dssp HHHHTTCHHHHHHTTTTTT-T--------CHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST---------TCCHHHH
T ss_pred HHHHcCcHHHHHHHHHHHH-h--------CHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc---------HHHHHHH
Confidence 9999999999977665422 2 4544 3368899999999999999999999872 2335667
Q ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHHHH-----hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Q 004812 521 TDVSSIYES--MNELEQAIKLLQKALKIYN-----DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK------ 587 (729)
Q Consensus 521 ~~la~~~~~--~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 587 (729)
..||.+|.+ .++..+.++.|...+.+.+ .. +..|..+..+|...++|+.|+...-+....
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~-------~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~ 317 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ-------AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 317 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT-------TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH-------HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHH
Confidence 778887765 5678888888876655554 22 246778999999999999998765433210
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004812 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (729)
+..+-.. .....+++.....|+ +....++..+..++.- . - ++ ......+...|+..-...+++.
T Consensus 318 f~~~~~k--v~n~elyYkai~fyl--~~~p~~l~~ll~~l~~---~--l-d~------~r~v~~~~~~~~l~l~~~yl~~ 381 (449)
T 1b89_A 318 FKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSP---R--L-DH------TRAVNYFSKVKQLPLVKPYLRS 381 (449)
T ss_dssp HHHHHHH--CSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG---G--C-CH------HHHHHHHHHTTCTTTTHHHHHH
T ss_pred HHHHHhc--hhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh---c--c-Cc------HHHHHHHHHcCCcHHHHHHHHH
Confidence 0000000 001234444444444 2334445555554421 0 0 22 1223455667777777766654
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 668 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
+.. .+...+-..|-.+|....+++.=.
T Consensus 382 v~~----------~n~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 382 VQN----------HNNKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp HHT----------TCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH----------hhHHHHHHHHHHHHHhhhhHHHHH
Confidence 432 233444555667788888876533
No 88
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.66 E-value=3e-15 Score=159.26 Aligned_cols=150 Identities=10% Similarity=-0.052 Sum_probs=141.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
.+..+..+|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++++.++.+|++||+.+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34456689999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
.+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+......|+.++..++.+++|. ..|..+.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 888877653
No 89
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.66 E-value=1.4e-14 Score=137.05 Aligned_cols=194 Identities=12% Similarity=0.148 Sum_probs=156.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (729)
+..|++++|...++.... +......++..+|.++...|++++|+.++++++.+++.. .+.+....++..
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~ 71 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDHTAEHRALHQ 71 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHH
Confidence 467899999885544322 234678999999999999999999999999999998874 357778899999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004812 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (729)
+|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+. ....+.+
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 149 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACA 149 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHH
Confidence 99999999999999999999999998763344467788999999999999999999999999998776544 3445677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
+..+|.++...|++++|+.++++++.+.+.... ......++..++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence 899999999999999999999999999877543 23333444444443
No 90
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=1.5e-14 Score=136.75 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=159.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004812 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (729)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (729)
++..|++++|...++.... ++ ...+.++..+|.++...|++++|+.++++++.+....++.+..+.++..+|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~------~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA------HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHT------ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC------Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3567899999995544421 11 234678999999999999999999999999999999888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004812 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (729)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (729)
.++...|++++|+.++++++.+++... .+......++..+|.++...|++++|+.++++++.+.+.. .+......+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~ 149 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA---DDQVAIACA 149 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHH
Confidence 999999999999999999999988543 1233678899999999999999999999999999997763 345566778
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (729)
+..+|.++...|++++|+.++++++.+.... +.....+.++..++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAEL-EDSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHhcccch
Confidence 8999999999999999999999999999887 5554455555554443
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.5e-15 Score=171.14 Aligned_cols=200 Identities=10% Similarity=-0.066 Sum_probs=165.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (729)
...|++++|+..|++++..........+|....++..+|.++...|++++|+..|++++++ .|....+++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---------VGWRWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------HCCCHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------CcchHHHHHH
Confidence 7889999999999999821111111126888899999999999999999999999999999 4445788999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004812 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (729)
+|.++..+|++++|+..|++++++.+.. ..++.++|.++...|++++ +.+|++++++. +....+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~~a 536 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVISA 536 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchHHH
Confidence 9999999999999999999999998766 4788999999999999999 99999999872 224578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIREEK 675 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 675 (729)
++++|.++..+|++++|+..|++++++ +|....++.++|.++...++.++| ...+++++......
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999998 899999999999999888876666 66777777666544
No 92
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=3.1e-14 Score=143.30 Aligned_cols=198 Identities=13% Similarity=-0.009 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
+.....+...+..+...|++++|+..+.++++..... .........+..+|.++...|++++|+.++++++.+....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 4455667788899999999999999999999874331 1122345567789999999999999999999999876654
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
......+.++..+|.+|...|++++|+.+|++++++....... ......++.++|.+|..+|++++|+.+|++++.+.
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334457789999999999999999999999999987765533 22234789999999999999999999999999997
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 004812 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIREEK 675 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 675 (729)
.... +......++.++|.+|..+|++++| ..+|++++.+.+..
T Consensus 227 ~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 227 CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 5432 2445678999999999999999999 88899999987653
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=8.5e-16 Score=137.43 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=127.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004812 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (729)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (729)
.||.++...|++++|+..+++++...+.. ...++.+|.+|...|++++|+.+|++++++. +....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------ERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH
Confidence 47889999999999999999998877765 4567899999999999999999999999972 22467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHcCCCC
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI-LEFVVGIREEKLGTAN 680 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~ 680 (729)
+|..+|.+|...|++++|+.+|++++++ +|....++..+|.+|...|++++|... +++++++ +
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~ 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence 9999999999999999999999999999 899999999999999999999887765 5899988 6
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q 004812 681 PDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 681 p~~~~~~~~La~~~~~~g~ 699 (729)
|....++..++.++...|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 8888888889999988875
No 94
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=1.1e-14 Score=146.51 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004812 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (729)
Q Consensus 394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (729)
.+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.++++++.+..... +....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHHH
Confidence 4566788899999999999999988764332222233455677899999999999999999999998643321 23345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004812 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
..++..+|.+|...|++++|+.+|++++.+.+.. .........+++++|.+|..+|++++|+.++++++.+.... +.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~ 231 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NS 231 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TB
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc
Confidence 7799999999999999999999999999887663 22233334799999999999999999999999999998764 55
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGE 593 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 593 (729)
....+.++.++|.+|...|++++| ..+|++++.+.+..+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 667788999999999999999999 8889999998776544
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=5.4e-15 Score=140.46 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----------------MGVMYYMLGNYSDSYDS 580 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 580 (729)
+..+...|..+...|++++|+.+|++++.+.|.. ..+++. +|.+|...|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567889999999999999999999999998765 456666 99999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh--
Q 004812 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL-- 658 (729)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 658 (729)
|++++++. +....++..+|.++...|++++|+.+|++++++ +|+...+++.+|.+|...|+.
T Consensus 77 ~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence 99999872 224678999999999999999999999999999 899999999999999877643
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 659 DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 659 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+...|++++. + .| ...+++.+|.++...|++++|+ ..|+++++++|+
T Consensus 141 ~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~ 189 (208)
T 3urz_A 141 KKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCC
T ss_pred HHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence 445555555542 1 22 3456788999999999999999 999999999997
No 96
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=1.4e-14 Score=145.79 Aligned_cols=194 Identities=12% Similarity=0.053 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (729)
..+...+..+...|++++|+..+++++.. ....+. ....+..+|.++...+++++|+.+|++++.+.... .+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~ 150 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence 33455677888999999999999988752 222222 24455668999999999999999999999853221 12
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
......++.++|.+|...|++++|+.+|+++++..+.. ..+.+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33446689999999999999999999999999988764 2467788889999999999999999999999999999987
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCC
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 594 (729)
. +.....+.++..+|.+|..+| ++++|+.+|++|+.+.+..+..
T Consensus 229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7 666677899999999999999 5799999999999998876654
No 97
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=2.3e-14 Score=144.36 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004812 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (729)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (729)
....+...+..+...|++++|+.++++++...... .........+..+|.++...+++++|+.+|++++.+.... .
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-~ 149 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-S
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-c
Confidence 34445566788899999999999999998853221 1111224455679999999999999999999999965443 3
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.......++.++|.+|...|++++|+.+|+++++..+.... .......++.++|.+|..+|++++|+.++++++++...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33455678999999999999999999999999998877643 34556789999999999999999999999999999777
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 004812 633 ECGPYHPDTLGVYSNLAGTYDAIGR-LDDAIEILEFVVGIREEK 675 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 675 (729)
... .+....++..+|.+|..+|+ +++|+.+|++++.+++..
T Consensus 229 ~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 229 INS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp TTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 543 45668899999999999995 699999999999998753
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.63 E-value=7.9e-15 Score=139.33 Aligned_cols=164 Identities=12% Similarity=0.134 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR----------------LADMYNRTGKLRESKSY 496 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 496 (729)
..+...|..+...|++++|+.+|++++.+ .|....+++. +|.+|...|++++|+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677899999999999999999999998 7888888888 99999999999999999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH--
Q 004812 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-- 574 (729)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 574 (729)
|++++++ .|....++..+|.++...|++++|+.+|++++++.|.. ..++..+|.+|...|+.
T Consensus 77 ~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHHH
Confidence 9999999 44557889999999999999999999999999997766 57889999999877653
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
..+...|.+++. . .....+++.+|.++...|++++|+.+|++++++
T Consensus 141 ~~~~~~~~~~~~-------~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 141 KKLETDYKKLSS-------P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHC---C-------C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC-------C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444555555432 1 123456788899999999999999999999998
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.1e-14 Score=135.04 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=150.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.......+..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34557788999999999999999999999987662 233678999999999999999999999999988554
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
. ..++..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+.+|++++..
T Consensus 75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP--------INFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3 57788999999999999999999999988621 13568899999999999999999999999998
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
.|....++..+|.++...|++++|+.++++++.+.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77778899999999999999999999999999875
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=1.8e-14 Score=138.84 Aligned_cols=181 Identities=11% Similarity=0.038 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004812 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (729)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (729)
...++.+|..+...|++++|+..|++++...|.. .....+++.+|.+|...|++++|+..|+++++..+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-----~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----H 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----C
Confidence 4568899999999999999999999999876543 233567889999999999999999999999986322 2
Q ss_pred hHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------H
Q 004812 597 AFFGVALNQMGLACVQ------------------RYSINEAVELFEEARSILEQECGPYHPDTLG--------------V 644 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~ 644 (729)
.....+++.+|.++.. .|++++|+..|+++++. .|+++.... .
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence 3345678888888876 57899999999999987 222222222 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...+|.+|...|++++|+..|+++++.. |.+|....+++.+|.++..+|++++|+ ..++.+....|+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~ 216 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCC
Confidence 2578999999999999999999999875 556667789999999999999999999 999999998887
No 101
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1e-13 Score=148.19 Aligned_cols=235 Identities=10% Similarity=0.053 Sum_probs=198.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
....|..+...|+|++|+..|.++++..+...... ......++..+|.+|...|++++|..++.+++.+.+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55678888999999999999999988632210000 023445789999999999999999999999999987
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
.... ......++..++.++...|+++.|+.++.+++............+.++..+|.+|...|+|.+|+.++++++..
T Consensus 87 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAK--SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCH--HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Hccc--hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 6542 23345567888999999999999999999999999988888889999999999999999999999999999887
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004812 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (729)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (729)
..... +.+....++..++.+|...|++++|..++++++.+.... ..++......+..+|.++...+++++|..+|.
T Consensus 165 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 165 FKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--YCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66543 467888999999999999999999999999999987764 33445567888999999999999999999999
Q ss_pred HHHHHHHhCC
Q 004812 542 KALKIYNDAP 551 (729)
Q Consensus 542 ~al~~~~~~~ 551 (729)
+++.......
T Consensus 241 ~a~~~~~~~~ 250 (434)
T 4b4t_Q 241 ESFESYHNLT 250 (434)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhhhhh
Confidence 9999988763
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.61 E-value=6.2e-15 Score=166.22 Aligned_cols=201 Identities=12% Similarity=-0.016 Sum_probs=166.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004812 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398 (729)
Q Consensus 319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 398 (729)
...|++++|+..|++++...-......+|....++..+|.++...|++++|+..|+++++..+.. +.+++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--------WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------HHHHHHH
Confidence 77899999999999998211111112268888999999999999999999999999999998765 4679999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (729)
Q Consensus 399 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (729)
|.++...|++++|+..|++++.+ .|....++.++|.++..+|++++ +.+|++++++ +|....+++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~ 538 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAF 538 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHH
Confidence 99999999999999999999875 44556788999999999999999 9999999998 788899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHhCC
Q 004812 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA-IKLLQKALKIYNDAP 551 (729)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 551 (729)
++|.++...|++++|+..|++++++ .|....++.++|.++...++.+++ ...+.++++......
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPT---------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTT---------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHhhccc---------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999999999999999999999887 556688899999999887776666 677777877776664
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.61 E-value=2.8e-13 Score=130.33 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
..++.+|..+...|++++|+..|++++.. .++.+....+++.+|.+|...|++++|+..|+++++....
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------ 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------
Confidence 45677788888888888888888888876 1223445677888888888888888888888888887332
Q ss_pred hHHHHHHHHHHHHHHHh------------------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 004812 513 PEEIASGLTDVSSIYES------------------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 574 (729)
.+....+++.+|.++.. .|++++|+..|+++++..|+... ...++..++.+.
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l~~~~------ 143 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRLVFLK------ 143 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHHHHHH------
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHH------
Confidence 33344567777777765 57788888888888777665421 111111111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (729)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (729)
. ........+|.+|...|++++|+..|+++++. .|+++....++..+|.+|..
T Consensus 144 -----------~-----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 144 -----------D-----------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp -----------H-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHHH
T ss_pred -----------H-----------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHHH
Confidence 0 01234467899999999999999999999998 22244455789999999999
Q ss_pred cCChHHHHHHHHHHHHH
Q 004812 655 IGRLDDAIEILEFVVGI 671 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~ 671 (729)
+|++++|+..++++...
T Consensus 197 ~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 197 MQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp TTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHhh
Confidence 99999999999977653
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=2.3e-15 Score=134.58 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=127.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 004812 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (729)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (729)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++.|.. .
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence 4788899999999999999998776 67778889999999999999999999999999997766 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL-FEEARSILEQECGPY 637 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 637 (729)
.++..+|.+|...|++++|+.+|++++++. +....++..+|.+|...|++++|... +++++++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------- 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------- 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence 889999999999999999999999999872 22467899999999999999887765 5999999
Q ss_pred ChhHHHHHHHHHHHHHHcCC
Q 004812 638 HPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~ 657 (729)
+|....++..++.++..+|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 89888899999999998886
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.57 E-value=2.5e-13 Score=135.05 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=195.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004812 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG--KLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (729)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (729)
.....++|+..+.+++.+ +|....+|+..+.++..++ ++++++.++.+++.. .|....+|+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~y~aW~ 107 (306)
T 3dra_A 45 AEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------NEKNYQIWN 107 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------CTTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------CcccHHHHH
Confidence 334447899999999999 8999999999999999999 999999999999998 444567888
Q ss_pred HHHHHH----Hhc---chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhC
Q 004812 522 DVSSIY----ESM---NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--DSYDSFKNAISKLRAIG 592 (729)
Q Consensus 522 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~ 592 (729)
..+.++ ... +++++++.++.+++...++. ..+|...+.++...|.++ +++.++.++++.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----- 175 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----- 175 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----
Confidence 888888 666 78999999999999988777 588999999999999998 999999999976
Q ss_pred CCCChHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHHHH
Q 004812 593 ERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEIL 665 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 665 (729)
.+....+|...+.++...+. ++++++++.+++.. +|....++..++.++...|+..+ ...++
T Consensus 176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 12245788999999988887 99999999999999 99999999999999999998655 44466
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh-hccc
Q 004812 666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD-ANSR 717 (729)
Q Consensus 666 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~-~~p~ 717 (729)
.+++.+. ..+|....++..|+.+|.+.|+.++|+ +.|+.+.+ .||-
T Consensus 245 ~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpi 291 (306)
T 3dra_A 245 LQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPI 291 (306)
T ss_dssp HTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGG
T ss_pred HHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChH
Confidence 6655431 124677889999999999999999999 99999997 7886
No 106
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=2e-13 Score=123.41 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=130.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
+....+.++..+|.++...|++++|+.++++++.+..... +......++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455677888899999999999999999999998877654 24555678889999999999999999999999998776
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (729)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (729)
. .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.+++++++
T Consensus 82 ~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3456667888999999999999999999999999988776 44556677888999999999999999999999988
Q ss_pred HHHH
Q 004812 587 KLRA 590 (729)
Q Consensus 587 ~~~~ 590 (729)
+.+.
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7643
No 107
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.56 E-value=1.3e-13 Score=146.75 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=141.8
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (729)
....+..+..+|+|++|+.++++++++.....|..+ ..+.++.+||.+|..+|+|++|+.++++++++.....+..++.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344555677899999999999999999999888765 7888999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
.+..+++||.+|..+|++++|+.+|++|+++.+..+|++||....+...|+.++..++.+++|...|+++.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654
No 108
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.55 E-value=4.7e-13 Score=120.93 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (729)
...+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|++++|+.++++++.+.....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-- 83 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-- 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Confidence 445678999999999999999999999999999888888888888999999999999999999999999999987764
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
+.+....++..+|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++++..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999998763 34667788999999999999999999999999999876
Q ss_pred hC
Q 004812 549 DA 550 (729)
Q Consensus 549 ~~ 550 (729)
..
T Consensus 161 ~~ 162 (164)
T 3ro3_A 161 EV 162 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=6.7e-14 Score=120.64 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
+..+..+..+|..++..|+|++|+.+|++++++ +|....++.++|.+|..+|++++|+..|++++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 457889999999999999999999999999999 8999999999999999999999999999999988
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccc
Q 004812 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIEL 725 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~ 725 (729)
+|....+++++|.++..+|++++|+ ..|+++++++|+ .....|+.
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQ-RAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcCCHHHHHHHHH
Confidence 6888999999999999999999999 999999999998 44444443
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.53 E-value=1.2e-13 Score=127.28 Aligned_cols=170 Identities=16% Similarity=0.026 Sum_probs=137.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004812 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (729)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (729)
+|.....++.+|..++..|+ +++|+..|+++++.. |....++..+|.++...|++++|+..|++++...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~- 70 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY- 70 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence 34444568899999999997 999999999999875 5568889999999999999999999999999875
Q ss_pred hhccccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004812 297 IEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (729)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (729)
+ ++.. +..++.+. ...+...+|+..|++++.. +|....+++.+|.++...|++++|+..|++
T Consensus 71 ----p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 71 ----Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp ----C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3 2221 22233332 2333445689999999998 788999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+++..|..... .++..+|.++...|++++|+..|++++.
T Consensus 134 ~l~~~p~~~~~------~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 134 ILKVNLGAQDG------EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCTTTTTT------HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCcccChH------HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99987764322 4688999999999999999999998864
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.52 E-value=1.9e-13 Score=117.75 Aligned_cols=117 Identities=13% Similarity=0.213 Sum_probs=106.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.+..+..+..+|..|+..|+|++|+.+|++++++. +....++.++|.++..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 34567889999999999999999999999999872 224679999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
+|....+++.+|.+|..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999998 688888998888764
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=7.2e-11 Score=130.58 Aligned_cols=411 Identities=9% Similarity=-0.062 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHH
Q 004812 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA 319 (729)
Q Consensus 240 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 319 (729)
+-+..|++++... |.....|..+.......+.++.+...|++++... +.. ...|...+....
T Consensus 50 d~i~~lE~~l~~n---------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~----~~lW~~Yi~~E~ 111 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ---------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLM----ANIWCMRLSLEF 111 (679)
T ss_dssp CHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCC----HHHHHHHHHHHH
Confidence 3444556666532 3446778888888888999999999999999887 222 234777777778
Q ss_pred HcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHh-cCCCC
Q 004812 320 MLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALDIHKD-NGSPA 387 (729)
Q Consensus 320 ~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~~ 387 (729)
..++ ++.+..+|++++.... ..| ....|..........++. +.....|++|+..... .. .
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~--~ 183 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP--K 183 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--S
T ss_pred hhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--c
Confidence 8888 9999999999998720 013 334666655555454443 3344677777765543 22 1
Q ss_pred CHHHHHHHHHHHHHH---------HHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHc
Q 004812 388 SLEEAADRRLMGLIC---------ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSL 445 (729)
Q Consensus 388 ~~~~a~~~~~lg~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~ 445 (729)
+. .+|....... ...++.+.+..+|.+++.+ +.. ....+|......- ...
T Consensus 184 s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~ 255 (679)
T 4e6h_A 184 SI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGELS 255 (679)
T ss_dssp CH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHHH
T ss_pred ch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHhh
Confidence 11 2233322221 2344577788888887631 111 1112221111111 111
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC--CC----------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 004812 446 SRYDEAGFAYQKALTAFKTNKG--EN----------------HPAVASVFVRLADMYNRTG-------KLRESKSYCENA 500 (729)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~--~~----------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a 500 (729)
.+|+.|...+.+.-.+...+.. +. .......|......-...+ ........|+++
T Consensus 256 ~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 256 AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 2334444444332222111100 00 1122344544444333222 123456789999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
+..+ +....+|...+..+...|+.++|+ ..|++|+..+|.. ..++..++.+....|+++.|..
T Consensus 336 L~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 336 AQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHHH
Confidence 9883 334678999999999999999997 9999999876654 4567788999999999999999
Q ss_pred HHHHHHHHHHHh-------CCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 580 SFKNAISKLRAI-------GERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 580 ~~~~al~~~~~~-------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
.|++++...... .+.. ......+|...+.+..+.|+.+.|..+|.+|++.. .+....++
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~ly 472 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHH
Confidence 999999864211 0100 01244578888888888999999999999998751 01123456
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 646 SNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 646 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
...|.+....+ +++.|..+|+.+++.+ |+....+...+.+....|+.+.|. ..|+.++...|
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~ 535 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence 66676666665 4899999999999975 445556667788888899999999 99999999877
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.50 E-value=2e-12 Score=128.61 Aligned_cols=237 Identities=8% Similarity=-0.071 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (729)
...++|+..+.+++.+ .|....+|+..+.++..+| ++++++.++.+++.. +|....+|+..+.+
T Consensus 47 e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~i 112 (306)
T 3dra_A 47 EYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLI 112 (306)
T ss_dssp CCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHH
Confidence 3447899999999875 6777789999999999999 999999999999998 89999999999999
Q ss_pred H----HHc---CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHhCCCCC
Q 004812 484 Y----NRT---GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE--QAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 484 ~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~ 554 (729)
+ ... +++++++.++.++++. +|....+|...+.++...|.++ ++++++.++++..+..
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~---------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N---- 179 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSS---------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN---- 179 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC----
Confidence 9 767 8999999999999998 4555789999999999999998 9999999999987666
Q ss_pred CcHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 004812 555 STVAGIEAQMGVMYYMLGN------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE-AVELFEEAR 627 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al 627 (729)
..+|...+.++...+. +++++.++.+++.+ .+....+|+.++.++...|+..+ ...++.+++
T Consensus 180 ---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 180 ---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp ---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred ---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5788889999988887 99999999999986 12245789999999999988544 444666555
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004812 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (729)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 692 (729)
.+- ..++....++..+|.+|...|+.++|+++|+.+.+. .+|.....+...+.
T Consensus 249 ~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 249 DLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNFWDYQIS 301 (306)
T ss_dssp EGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHHHHHHHH
T ss_pred hcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHh
Confidence 431 113666779999999999999999999999998752 26877777766554
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.49 E-value=3.5e-13 Score=134.93 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004812 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (729)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (729)
....+..+|..+...|++++|+..|++++...|.. ..++..+|.++...|++++|+..|++++...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------- 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD------- 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-------
Confidence 35678899999999999999999999999998766 5788999999999999999999999987642
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+ .........+..+...++.++|+..|++++.. +|+...+++.+|.+|...|++++|+..|++++..
T Consensus 182 p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---- 248 (287)
T 3qou_A 182 Q-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---- 248 (287)
T ss_dssp C-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred c-chHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence 1 13355666777788889999999999999999 9999999999999999999999999999999987
Q ss_pred cCCCChhH--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 676 LGTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 676 ~~~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+|.. ..++..|+.++...|+.++|. ..|++++..
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al~~ 284 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQLYA 284 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHHHH
Confidence 5666 889999999999999999999 999988753
No 115
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.49 E-value=6.1e-13 Score=139.20 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=116.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
..|+|++|+.++++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++++.++.+|++||+.+..+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999999888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004812 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 691 (729)
.+|..+|++++|+.+|++|+++++..+|++||.+..+..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.49 E-value=1.3e-13 Score=127.03 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (729)
..+..+|..+...|++++|+..|++++...|.. ..++..+|.++...|++++|+..|++++... + . +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~-~ 73 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLEY----Q-D-N 73 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-C-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-C-h
Confidence 457789999999999999999999999999887 6889999999999999999999999987642 1 1 1
Q ss_pred HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 598 FFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 598 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
..+..++.+. ...+...+|+..|+++++. +|+...+++.+|.++...|++++|+..|++++++
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 137 (176)
T 2r5s_A 74 ---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV----- 137 (176)
T ss_dssp ---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred ---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence 2233334332 2333445689999999999 8999999999999999999999999999999975
Q ss_pred CCCChhH--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 677 GTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 677 ~~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+|.. ..++..|+.++...|+.++|+ ..|++++.
T Consensus 138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~~al~ 172 (176)
T 2r5s_A 138 ---NLGAQDGEVKKTFMDILSALGQGNAIA-SKYRRQLY 172 (176)
T ss_dssp ---CTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHHHHHH
T ss_pred ---CcccChHHHHHHHHHHHHHhCCCCcHH-HHHHHHHH
Confidence 4554 568999999999999999999 99999875
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.49 E-value=7e-13 Score=132.71 Aligned_cols=170 Identities=15% Similarity=0.014 Sum_probs=149.8
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh
Q 004812 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI 297 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (729)
|.....++.+|..+...|+ +++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLS---------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence 7888999999999999997 999999999999874 4457789999999999999999999999998875
Q ss_pred hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004812 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (729)
Q Consensus 298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (729)
++.. ..+...+..+...++.++|+..|++++.. +|....+++.+|.++...|++++|+..|.+++
T Consensus 182 ---p~~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 182 ---QDTR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp ---CSHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---cchH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3222 23666777788889999999999999999 79999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+..|...+ ..++..++.++...|+.++|+..|++++.
T Consensus 247 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAAD------GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGG------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hccccccc------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99876532 35689999999999999999999998875
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.48 E-value=3.2e-13 Score=130.84 Aligned_cols=209 Identities=11% Similarity=-0.029 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-------HHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------SSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
.++..|.-+ ..+++..|...|.+++++ .|..+.+|..+ +.++...++..+++..+++++.+.+
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 344455555 589999999999999999 66778999999 8999999999999999999999877
Q ss_pred hCCCCCCc--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004812 549 DAPGQQST--------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (729)
Q Consensus 549 ~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 614 (729)
...+.... ...+...++.++...|+|++|...|..++.. .+. .. ..+.+|.++.+.+
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p~-~~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GSE-HL-VAWMKAVVYGAAE 149 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TCH-HH-HHHHHHHHHHHTT
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCc-hH-HHHHHHHHHHHcC
Confidence 65443322 3456677899999999999999999876642 222 33 8889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHH
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAE 692 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~ 692 (729)
+|++|+.+|+++... .+|.. ..+++.+|.++..+|++++|+.+|++++. ++..|. ...+++.+|.
T Consensus 150 r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAM 216 (282)
T ss_dssp CHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHH
Confidence 999999999876543 12332 45899999999999999999999999873 233365 7789999999
Q ss_pred HHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 693 LLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 693 ~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
++..+|+.++|. ..|++++..+|+
T Consensus 217 aL~~lGr~deA~-~~l~~a~a~~P~ 240 (282)
T 4f3v_A 217 ARRSQGNESAAV-ALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHTCHHHHH-HHHHHHHHHSCC
T ss_pred HHHHcCCHHHHH-HHHHHHHhcCCc
Confidence 999999999999 999999999996
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.47 E-value=9.3e-14 Score=123.37 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
+....+++.+|.++...|++++|+.+|++++.+ +|....+|.++|.+|..+|++++|+..|++++.+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----- 99 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----- 99 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 446788999999999999999999999999999 8999999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...+++++|.+|..+|++++|+ ..|++++.+.|+
T Consensus 100 ---~P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~ 136 (151)
T 3gyz_A 100 ---GKNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSND 136 (151)
T ss_dssp ---SSSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred ---CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 6888889999999999999999999 999999999987
No 120
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.47 E-value=8.2e-13 Score=138.67 Aligned_cols=131 Identities=13% Similarity=-0.025 Sum_probs=123.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (729)
-+..+|+|++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++.+.+..+|++||+.+..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34578999999999999999887777777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
+||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.47 E-value=6.3e-13 Score=147.29 Aligned_cols=156 Identities=10% Similarity=0.063 Sum_probs=126.7
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004812 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (729)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (729)
.|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++++. +....++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALH--------PGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------TTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 478999999999999887655 5788999999999999999999999999852 2246789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004812 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (729)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 689 (729)
|..+|++++|+.+|++++++ +|+...++..+|.+|..+|++++|+.+|++++++ +|....++..
T Consensus 67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 130 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ 130 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999999999999999 8888999999999999999999999999999987 5788889999
Q ss_pred HHHHHHHh---CCHhHHHHHHHHHHHhhccc
Q 004812 690 LAELLKEA---GRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 690 La~~~~~~---g~~~~A~~~~l~~al~~~p~ 717 (729)
++.++... |++++|. ..|+++++.+|.
T Consensus 131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~ 160 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCC
T ss_pred HHHHHHHhhccccHHHHH-HHHHHHHhcCCc
Confidence 99999999 9999999 999999999997
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.46 E-value=2.1e-12 Score=122.74 Aligned_cols=177 Identities=18% Similarity=0.134 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 004812 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 528 (729)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++++. + ...++++||.+|.
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g-----~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------G-----DGDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C-----CHHHHHHHHHHHH
Confidence 3577788888763 34678999999999999999999999999875 1 2568999999999
Q ss_pred hcc----hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004812 529 SMN----ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (729)
Q Consensus 529 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (729)
. + ++++|+.+|+++.+. + ...+++.+|.+|.. .+++++|+.+|+++++.- .....+
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~-----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~ 125 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEA-----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAV 125 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchH
Confidence 8 7 899999999999653 1 15678899999998 899999999999998641 111246
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHH
Q 004812 601 VALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G-----RLDDAIEILEFVVG 670 (729)
Q Consensus 601 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~ 670 (729)
.+++.||.+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+.+|+++++
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999 88999999999999875 23345889999999864 3 89999999999997
Q ss_pred H
Q 004812 671 I 671 (729)
Q Consensus 671 ~ 671 (729)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 5
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.46 E-value=2.2e-13 Score=132.00 Aligned_cols=219 Identities=14% Similarity=0.053 Sum_probs=170.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL-------ADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
++..|.-+ ..+++..|...|.+++.+ +|..+.+|..+ +.++...++..+++..+.+++.+....
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~ 80 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST 80 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 34445555 589999999999999999 89999999999 899999999999999999998854332
Q ss_pred CCCCCh------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004812 508 VPGVPP------------EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575 (729)
Q Consensus 508 ~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 575 (729)
+..... .....+...++.++...|++++|.+.|..++... +... ..+.+|.++...++|+
T Consensus 81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-------SEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------CHHH-HHHHHHHHHHHTTCHH
T ss_pred hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CchH-HHHHHHHHHHHcCCHH
Confidence 211000 0123456778999999999999999998766422 2223 7789999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHH
Q 004812 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-TLGVYSNLAGTYDA 654 (729)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~ 654 (729)
+|+.+|+++... .++.....+++.+|.++..+|++++|+.+|++++.- +..|. ...+++.+|.++..
T Consensus 153 dA~~~l~~a~~~------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 153 DVIDQVKSAGKW------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHHTTGGGC------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHHHHHHHH
Confidence 999999866442 111223468999999999999999999999999742 21255 66799999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004812 655 IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (729)
Q Consensus 655 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 691 (729)
+|+.++|...|++++.. +|. ..+...|.
T Consensus 221 lGr~deA~~~l~~a~a~--------~P~-~~~~~aL~ 248 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT--------HPE-PKVAAALK 248 (282)
T ss_dssp HTCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence 99999999999999987 566 55555543
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.46 E-value=1.1e-12 Score=124.81 Aligned_cols=178 Identities=11% Similarity=0.027 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 004812 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (729)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (729)
.+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|+++.+. +. ..+++.+|.+|..
T Consensus 3 ~eA~~~~~~aa~~-----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~----~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GD----GDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHc
Confidence 3577888888765 12568999999999999999999999999864 21 4778899999998
Q ss_pred cC----CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCh--h
Q 004812 571 LG----NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHP--D 640 (729)
Q Consensus 571 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~--~ 640 (729)
+ ++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|+++++. .+ .
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcc
Confidence 7 999999999999652 135789999999998 88999999999999986 44 4
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh-C-----CHhHHHHHHHHH
Q 004812 641 TLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA-G-----RVRSRKAQSLET 710 (729)
Q Consensus 641 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~-g-----~~~~A~~~~l~~ 710 (729)
...++++||.+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+ .+|++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~-~~~~~ 193 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL-HWLNV 193 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHH
Confidence 57899999999999 88999999999999874 33445899999999864 3 899999 99999
Q ss_pred HHhhccc
Q 004812 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
+++....
T Consensus 194 A~~~g~~ 200 (212)
T 3rjv_A 194 SCLEGFD 200 (212)
T ss_dssp HHHHTCH
T ss_pred HHHcCCH
Confidence 9987543
No 125
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.43 E-value=2.3e-11 Score=121.45 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=186.6
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCCC
Q 004812 443 LSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 443 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 511 (729)
...|.+. +|+..+.+++.+ +|....+|+..+.++...+. +++++.++..++..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence 3556665 799999999998 89999999999999988776 68899999999988
Q ss_pred ChHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 004812 512 PPEEIASGLTDVSSIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDSYDSFKNAISKL 588 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 588 (729)
+|....+|...+.++...++ +++++.++.+++++.+.. ..+|...+.++...|. +++++.++.+++..
T Consensus 104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~- 174 (331)
T 3dss_A 104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR- 174 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence 45557889999999999984 899999999999988776 5788999999999998 69999999999985
Q ss_pred HHhCCCCChHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004812 589 RAIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (729)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (729)
.+....+|+.++.++... +.++++++++.+++.+ +|+...+++.+..++..
T Consensus 175 -------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp -------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred -------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 122457888888888776 4589999999999999 89999999877777666
Q ss_pred c-----------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH---HhCCHhHHHHHHHHHHHhhccc
Q 004812 655 I-----------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK---EAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 655 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~---~~g~~~~A~~~~l~~al~~~p~ 717 (729)
. +.++++++.+++++++ .|+...++..++.+.. ..|..++.. .+|.+++++||-
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~ 307 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPM 307 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGG
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcc
Confidence 5 4578888888888877 5676666655554433 357788888 999999999997
No 126
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=7.4e-13 Score=146.72 Aligned_cols=153 Identities=12% Similarity=0.023 Sum_probs=122.4
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004812 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (729)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (729)
.|++++|+.+|+++++. .+....++..+|.++...|++++|+.+|++++++.+.. ..++..+|.
T Consensus 2 ~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGR 65 (568)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence 47899999999999988 34456789999999999999999999999999886554 578899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004812 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (729)
+|...|++++|+.+|++++++. +....++..+|.++...|++++|+.+|++++++ +|....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 9999999999999999999872 123578999999999999999999999999999 888889999
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHH
Q 004812 647 NLAGTYDAI---GRLDDAIEILEFVVGI 671 (729)
Q Consensus 647 ~la~~~~~~---g~~~~A~~~~~~al~~ 671 (729)
.+|.++..+ |++++|+..|+++++.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999 9999999999999987
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.43 E-value=3.8e-13 Score=137.80 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=139.9
Q ss_pred hcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------ChHHHH
Q 004812 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGV 601 (729)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~ 601 (729)
.++++++|+..+++++...+.. +.++..+|.++...|++++|+.+|++++.+.+...... .+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4677788888888888776655 67889999999999999999999999999753321100 112257
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
++.++|.+|..+|++++|+.+|++++++ +|....+++.+|.+|..+|++++|+.+|++++++ +|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 8999999999999999999999999999 8999999999999999999999999999999988 68
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
....++..|+.++...|++++|....|++++...
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999646777776553
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.42 E-value=7.7e-12 Score=108.75 Aligned_cols=134 Identities=20% Similarity=0.340 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.++..+|.++...|++++|+.+|++++... + ....++..+|.++...|++++|+.+|++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----P----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC----C----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 357789999999999999999999998752 1 12467888999999999999999999999988 6
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|. ..+++++..+|+
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence 777789999999999999999999999999986 4666788999999999999999999 999999999884
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.41 E-value=4.6e-12 Score=109.26 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.+.++.++|.+++..|+|++|+.+|++|+++ +|....++.++|.+|..+|++++|+..|++++++.... ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RA 77 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-ch
Confidence 5678899999999999999999999999999 89999999999999999999999999999999986543 23
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++....++.++|.++...|++++|+ ..|++++..+|+
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~ 115 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSEFRD 115 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence 34556789999999999999999999 999999998886
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.39 E-value=4.1e-12 Score=112.71 Aligned_cols=102 Identities=10% Similarity=-0.003 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.+....+++.+|.++...|++++|+.+|++++.+. +....+|..+|.+|..+|++++|+.+|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 34457889999999999999999999999999872 234679999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+|+...+++++|.+|..+|++++|+..|++++++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999987
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.39 E-value=6e-12 Score=108.57 Aligned_cols=108 Identities=10% Similarity=0.174 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
++.+.++.++|..++..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..|++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 566788999999999999999999999999999 44457889999999999999999999999999999988
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
.......+.++..+|.++..+|++++|+.+|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666677889999999999999999999999999875
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.36 E-value=4.9e-12 Score=112.38 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004812 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (729)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (729)
.|++++.+.+. ....++.+|.++...|++++|+.+|++++.+. +....+|..+|.++...|++++
T Consensus 9 ~~~~al~~~p~-------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 9 TIAMLNEISSD-------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------HYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp SHHHHTTCCHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHcCCHh-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------cccHHHHHHHHHHHHHHhhHHH
Confidence 34555544443 36778899999999999999999999999862 2246788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004812 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 693 (729)
|+.+|++++.+ +|+...+++.+|.+|..+|++++|+.+|++++++. +.+|.........-..
T Consensus 74 A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 74 AIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSSM 135 (148)
T ss_dssp HHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHHH
Confidence 99999999999 88888899999999999999999999999999886 5566665444333333
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.36 E-value=5.8e-12 Score=119.90 Aligned_cols=139 Identities=12% Similarity=0.007 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
..++.+|.++...|++++|+.+|++++. . ...++..+|.++...|++++|+.+|++++.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 4467899999999999999999998841 1 2468999999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc--------CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL--------GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (729)
|....++..+|.+|..+|++++|+.+|++++++..... ....|....+++.+|.++...|++++|. ..|++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 146 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence 88889999999999999999999999999998631100 0023566799999999999999999999 99999
Q ss_pred HHhhccc
Q 004812 711 LLDANSR 717 (729)
Q Consensus 711 al~~~p~ 717 (729)
++.++|+
T Consensus 147 al~~~p~ 153 (213)
T 1hh8_A 147 ATSMKSE 153 (213)
T ss_dssp HHTTCCS
T ss_pred HHHcCcc
Confidence 9999995
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.36 E-value=3.4e-12 Score=113.42 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
+....+++.+|.++...|++++|+.+|++++.+ +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 84 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----- 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 445678999999999999999999999999999 8999999999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...+++.+|.+|...|++++|+ ..|+++++++|+
T Consensus 85 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 121 (148)
T 2vgx_A 85 ---DIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIAN 121 (148)
T ss_dssp ---STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTT
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 5778889999999999999999999 999999999886
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.35 E-value=5.9e-12 Score=128.93 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=133.9
Q ss_pred ccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHhHHHHHHHHHHH
Q 004812 201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAAI 274 (729)
Q Consensus 201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~~~~la~~ 274 (729)
..+..+++.+.......|..+..+..+|..++..|+ |++|+.+|++|+.+.+...... ..+..+.++.++|.+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 445556656666666688899999999999999997 9999999999999863321000 012336889999999
Q ss_pred HHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004812 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354 (729)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 354 (729)
|..+|++++|+.+|++++.+. +.. ..+++.+|.+|..+|++++|+.+|++++++ +|....++.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-----p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~ 268 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-----SNN----EKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKT 268 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-----CCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHH
Confidence 999999999999999999986 333 345999999999999999999999999999 788889999
Q ss_pred HHHHHHHHhcCHHHH-HHHHHHHHHHHH
Q 004812 355 YLAEAHVQALQFSEA-QKFCQMALDIHK 381 (729)
Q Consensus 355 ~la~~~~~~g~~~~A-~~~~~~al~~~~ 381 (729)
.++.++...|++++| ...|.+++....
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 557777776543
No 136
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.34 E-value=1.7e-11 Score=107.06 Aligned_cols=116 Identities=12% Similarity=-0.023 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECG----PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
+..+..+|..++..|+|++|+..|++|+++...... ...|....+|.++|.++..+|++++|+..|+++++++.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567888999999999999999999999999322000 0011234499999999999999999999999999985544
Q ss_pred cCCCChhHHHHH----HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 676 LGTANPDVDDEK----RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 676 ~~~~~p~~~~~~----~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
. +-+|+...+| +++|.++..+|++++|+ ..|+++++++|+
T Consensus 91 ~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 G-ELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIEE 134 (159)
T ss_dssp C-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred c-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence 3 5568999999 99999999999999999 999999999998
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.33 E-value=4.6e-10 Score=112.09 Aligned_cols=237 Identities=8% Similarity=-0.008 Sum_probs=187.4
Q ss_pred HHhCCHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 403 ETKGDHE-AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR----------YDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 403 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
...|++. +|+..+.+++. ..|....+|+..+.++...+. +++++.++..++.. +|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~P 105 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NP 105 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CC
Confidence 3456655 78999988874 467777888989988887776 68888999998887 89
Q ss_pred hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHH
Q 004812 472 AVASVFVRLADMYNRTGK--LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYN 548 (729)
Q Consensus 472 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 548 (729)
....+|...+.++...++ +++++.++.++++. ++....+|...+.+....|. ++++++++.+++...+
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 999999999999999994 89999999999998 55567889999999999998 6999999999998876
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-
Q 004812 549 DAPGQQSTVAGIEAQMGVMYYML--------------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR- 613 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 613 (729)
.. ..+|..++.++... +.+++++.++.+++.+. +....+|+.+..++...
T Consensus 177 ~N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 177 SN-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp CC-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHSSS
T ss_pred CC-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcc
Confidence 65 57888888888877 45889999999998862 22345676555555444
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004812 614 ----------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD---AIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 614 ----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~ 680 (729)
+.++++++++.+++++ .|+...++..++.+.. ..|..++...++.+.+++ +
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------D 305 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------D 305 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------C
T ss_pred CccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------C
Confidence 4578999999999998 7887666666655443 357788999999999887 7
Q ss_pred hhHHHHHHHHHHH
Q 004812 681 PDVDDEKRRLAEL 693 (729)
Q Consensus 681 p~~~~~~~~La~~ 693 (729)
|....-|..|+.-
T Consensus 306 p~r~~~y~d~~~~ 318 (331)
T 3dss_A 306 PMRAAYLDDLRSK 318 (331)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 8776666655543
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.33 E-value=1.4e-11 Score=122.77 Aligned_cols=194 Identities=15% Similarity=0.072 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
+..+..+|..+...|++++|+.+|++++.. .|....++.++|.+|...|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999998 7888899999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
.+....+++.+|.+|..+|++++|+.+|++++.+.+.............. ... ++..+.. .....
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----~~~------~~~~~~~----~~~~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----RIA------KKKRWNS----IEERR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----HHH------HHHHHHH----HHHTC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----HHH------HHHHHHH----HHHHH
Confidence 34457789999999999999999999999999999876332222211111 111 1111111 11111
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 004812 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-GRLDDAIEILEFVVG 670 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 670 (729)
.... . .+...++.++ .|++++|++.|+++++. +|........++.++... +.+++|..+|.++.+
T Consensus 133 ~~~~-~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 133 IHQE-S---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCC-C---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hhhh-H---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1112 1 2334444443 68999999999999987 777777777888777766 778889999988765
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.33 E-value=5.1e-11 Score=119.39 Aligned_cols=247 Identities=11% Similarity=0.021 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 508 (729)
....++..+..+....+..++|+..+.+++.+ +|....+|+..+.++...| .+++++.++++++..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----- 118 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----- 118 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence 44455555555666667778899999999998 8888999999999999998 599999999999887
Q ss_pred CCCChHHHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--------HHH
Q 004812 509 PGVPPEEIASGLTDVSSIYESM-N-ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--------DSY 578 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~ 578 (729)
.|....+|+..+.++... + ++++++.++.+++...++. ..+|...+.++...|.++ +++
T Consensus 119 ----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 119 ----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp ----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 444577888899988887 7 8889999999888776655 577888888888887777 899
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
.++.++++. .+....+|+..+.++...+. ++++++++.+++.+ +|....++..+..+
T Consensus 188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999988885 12245789999999998886 79999999999999 99999999999999
Q ss_pred HHHcCChHH------------HHH-HHHHHHHHHHHHcCC-----CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH-
Q 004812 652 YDAIGRLDD------------AIE-ILEFVVGIREEKLGT-----ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL- 712 (729)
Q Consensus 652 ~~~~g~~~~------------A~~-~~~~al~~~~~~~~~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al- 712 (729)
+...|+... .+. .+....+.+....+. ..+....++..|+.+|...|+.++|. +.++.+.
T Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~~ 330 (349)
T 3q7a_A 252 LKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLSS 330 (349)
T ss_dssp HHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Confidence 998887511 000 011122222222222 12466778999999999999999999 9999986
Q ss_pred hhccc
Q 004812 713 DANSR 717 (729)
Q Consensus 713 ~~~p~ 717 (729)
+.||-
T Consensus 331 ~~dpi 335 (349)
T 3q7a_A 331 EYDQM 335 (349)
T ss_dssp TTCGG
T ss_pred hhChH
Confidence 56774
No 140
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=4.5e-11 Score=103.79 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
.+++.+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 35778999999999999999999999987 56677889999999999999999999999999882
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 2235678899999999999999999999999875543 467788999999999999999999998875
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=6.1e-11 Score=107.48 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34567889999999999999999999999998 6777899999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (729)
.+....++..+|.++...|++++|+.+|++++.+.+.. .....+..++..+...|++++|+.++.++..+..
T Consensus 77 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 33346789999999999999999999999999886544 1123335566668889999999999999988876
Q ss_pred HhC
Q 004812 590 AIG 592 (729)
Q Consensus 590 ~~~ 592 (729)
...
T Consensus 149 ~~~ 151 (166)
T 1a17_A 149 SLD 151 (166)
T ss_dssp HCC
T ss_pred ccc
Confidence 543
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=7.5e-11 Score=106.90 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
.+..+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 76 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 35678899999999999999999999999862 123578999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH--HHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~--~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+|....++..+|.++..+|++++|+.+|++++.+ +|....++ ..++..+...|++++|+ ..++++..+
T Consensus 77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~ 146 (166)
T 1a17_A 77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSV 146 (166)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HcccchHHH
Confidence 7888889999999999999999999999999987 35555555 44555588999999999 999988777
Q ss_pred ccc
Q 004812 715 NSR 717 (729)
Q Consensus 715 ~p~ 717 (729)
.+.
T Consensus 147 ~~~ 149 (166)
T 1a17_A 147 VDS 149 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 655
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.31 E-value=5.6e-11 Score=102.33 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
+..+..+|..+...|++++|+.+|++++.+. +....++..+|.++...|++++|+..|++++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-------- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 5678899999999999999999999999872 223578999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 696 (729)
+|....+++.+|.++..+|++++|+..|++++.+.... ...|....++..++.+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999985333 1236777777777776654
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=2.1e-11 Score=110.38 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=110.8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---C-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER---K-------SAFFGVALNQMGLACVQRYSINEAVELFEE 625 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (729)
..+..+..+|..++..|+|++|+.+|.+++.+....... . .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 446778899999999999999999999999986654211 0 233567899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH-HHHHHHHHHHHHhCCHhHH
Q 004812 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD-DEKRRLAELLKEAGRVRSR 703 (729)
Q Consensus 626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~La~~~~~~g~~~~A 703 (729)
++.+ +|....+++.+|.+|..+|++++|+..|++++.+ +|... .+...|+.+....++..++
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 8999999999999999999999999999999988 57776 5677777777666554443
No 145
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.31 E-value=6.2e-11 Score=124.01 Aligned_cols=122 Identities=8% Similarity=0.035 Sum_probs=113.7
Q ss_pred HhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004812 528 ESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (729)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (729)
...|+|++|+.++++++.+.....|..+ ..+.++.++|.+|..+|+|++|+.++++++.+.....+..++..+..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999999998888765 778899999999999999999999999999999999888889999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
|.+|..+|++++|+.+|++|+++....+|++||....+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999988777664
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=5.6e-12 Score=118.50 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=113.1
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------
Q 004812 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK------- 595 (729)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 595 (729)
.+......|++++|.+.+.......... +..+..+|..+...|+|++|+.+|.+++.+.+......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQS-------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3444445566666655555443333222 45566777777777788777777777776533211100
Q ss_pred -ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004812 596 -SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 596 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
......++.++|.++...|++++|+.+|++++.+ +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--- 151 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---
Confidence 0012368899999999999999999999999999 8888899999999999999999999999999987
Q ss_pred HcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 675 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 675 ~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
+|....++..++.++...++..++....+..++.
T Consensus 152 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 -----NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -----STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788889999999999999888877445555544
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=6.7e-11 Score=101.81 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..+..+..+|..++..|++++|+.+|++++.+ .|....++..+|.++...|++++|+..|++++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34577889999999999999999999999998 7888899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004812 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568 (729)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 568 (729)
.|....++..+|.++..+|++++|+..|++++.+.++.. ..+....++..++.+.
T Consensus 68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN-NGSSAREIDQLYYKAS 122 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC-CchhHHHHHHHHHHHH
Confidence 344577899999999999999999999999999986542 2222234445555444
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=7.4e-12 Score=117.69 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc-
Q 004812 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST- 556 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 556 (729)
...+......|++++|.+.+...... .+..+..+..+|.++...|++++|+.+|.+++.+.+..+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 34455666677787777777655444 44567789999999999999999999999999987765322111
Q ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004812 557 --------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (729)
Q Consensus 557 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (729)
...++.++|.++...|++++|+.++++++.+. +....++..+|.++..+|++++|+.+|++++.
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 13788999999999999999999999999872 22457899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI-EILEFV 668 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 668 (729)
+ +|....++..++.++..+++..++. ..|.+.
T Consensus 151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 L--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp H--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred H--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8888899999999999998887776 334433
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=4e-12 Score=126.65 Aligned_cols=195 Identities=12% Similarity=0.031 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004812 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (729)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (729)
+..+..+|..++..|+|++|+..|++++.+. +.++ .++..+|.+|..+|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 5678899999999999999999999999885 3333 35899999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004812 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (729)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 424 (729)
+|....+++.+|.+|...|++++|+..|++++++.+........ .++..+ . ..++........ ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~---~~~~~~--~------~~~~~~~~~~~~---~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD---DIPSAL--R------IAKKKRWNSIEE---RR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS---HHHHHH--H------HHHHHHHHHHHH---TC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH---HHHHHH--H------HHHHHHHHHHHH---HH
Confidence 78889999999999999999999999999999999876432111 011111 1 111111111111 12
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004812 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRI 503 (729)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 503 (729)
....+.. ...++.++ .|++++|++.++++++. .|........++.++... +.+++|...|.++.+.
T Consensus 133 ~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2223332 33344443 68999999999999887 666667777777777766 6788898888887654
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.30 E-value=8.6e-11 Score=102.69 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG----ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
.+..+..+|..++..|+|++|+..|++++++...... ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3566788999999999999999999999999432100 001224559999999999999999999999999998554
Q ss_pred CCCCCChHHHHHHH----HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004812 507 PVPGVPPEEIASGL----TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (729)
Q Consensus 507 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (729)
. +.-.|....+| +++|.++..+|++++|+..|++++++.|...+....+..+
T Consensus 90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3 23345567778 9999999999999999999999999999987766655443
No 151
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.29 E-value=5.1e-11 Score=125.06 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=120.5
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 004812 526 IYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN 604 (729)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 604 (729)
-+..+|++++|+..+++++.+.....+..+ ..+.++.++|.+|..+|+|++|+.++++++.+.....+..++..+..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 355789999999999999999888777665 7788999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004812 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (729)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (729)
+||.+|..+|++++|+.+|++|+++++...|++||....++.+|+.+...+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.28 E-value=3.9e-12 Score=136.13 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=131.0
Q ss_pred hcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-------CChHHHH
Q 004812 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-------KSAFFGV 601 (729)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~ 601 (729)
.++++++|+..++.++...+.. +..+..+|.+++..|+|++|+.+|++++.+....... .......
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 4566777777777777666554 6788899999999999999999999999975432100 0112357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
++.++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+..|++++++ +|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence 8999999999999999999999999999 8999999999999999999999999999999976 68
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLL 712 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al 712 (729)
....++..|+.++...|++++|....+.+++
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988745555444
No 153
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.28 E-value=3.7e-11 Score=114.28 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
.+..++.+|.++...|++++|+..|++++ .. ...++..+|.+|...|++++|+.+|++++.+ .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34568899999999999999999999873 11 3568999999999999999999999999998 6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (729)
|....++..+|.+|...|++++|+.+|++++++..... .....+....++.++|.++...|++++|+.+|+++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88889999999999999999999999999999754310 00023455688999999999999999999999999
Q ss_pred HHHHHh
Q 004812 544 LKIYND 549 (729)
Q Consensus 544 l~~~~~ 549 (729)
+.+.+.
T Consensus 148 l~~~p~ 153 (213)
T 1hh8_A 148 TSMKSE 153 (213)
T ss_dssp HTTCCS
T ss_pred HHcCcc
Confidence 987654
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.27 E-value=6.1e-11 Score=104.57 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
+.....++.+|.++...|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 81 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----- 81 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 345678899999999999999999999999999 8999999999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|....+++.+|.+|...|++++|+ ..|++++.++|+
T Consensus 82 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 118 (142)
T 2xcb_A 82 ---DINEPRFPFHAAECHLQLGDLDGAE-SGFYSARALAAA 118 (142)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHT
T ss_pred ---CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 5777889999999999999999999 999999999996
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.27 E-value=6.9e-11 Score=107.15 Aligned_cols=103 Identities=24% Similarity=0.276 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
..+..+..+|.++...|++++|+.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 74 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV------ 74 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence 45778999999999999999999999999999 8888999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 678 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|....+++.+|.+|...|++++|+ ..|++++.++|+
T Consensus 75 --~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 111 (164)
T 3sz7_A 75 --DPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGN 111 (164)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSS
T ss_pred --CCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence 6888999999999999999999999 999999999998
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=3.5e-11 Score=102.68 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
.++.+|.++...|++++|+..|++++.. +|....+++.+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678899999999999999999999999 8999999999999999999999999999999988 68
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+...++..||.+|...|++++|+ ..|+++++++|+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~ 117 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQ 117 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcC
Confidence 88899999999999999999999 999999999996
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-10 Score=101.30 Aligned_cols=122 Identities=11% Similarity=0.190 Sum_probs=109.4
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
.+.....+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 34667889999999999999999999999998752 123578999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004812 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 699 (729)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 7888889999999999999999999999999987 68888899999999998875
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.25 E-value=7.5e-10 Score=110.95 Aligned_cols=256 Identities=11% Similarity=-0.041 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
..++..+..+....+..++|+..+.+++.+ .|....+|+..+.++..+| .+++++.++.+++.. +
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------n 119 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------N 119 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------C
Confidence 344555555666667778999999999865 6667789999999999999 599999999999987 8
Q ss_pred hhHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH--------HHHHHH
Q 004812 471 PAVASVFVRLADMYNRT-G-KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE--------QAIKLL 540 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~ 540 (729)
|....+|...+.++... + ++++++.++.++++. ++....+|...+.+....|.++ ++++++
T Consensus 120 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~---------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 120 LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP---------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 99999999999999998 8 899999999999877 4455788999999999998888 999999
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc
Q 004812 541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR 613 (729)
Q Consensus 541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 613 (729)
.++++..+.. ..+|+..+.++...+. +++++.++.+++.+. +....+|+.+..++...
T Consensus 191 ~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 191 NEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhc
Confidence 9999987666 5788999999998887 789999999998862 22356788877787776
Q ss_pred CCHHH------------HHH-HHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 614 YSINE------------AVE-LFEEARSILEQECGP-----YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 614 g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
|+... .+. .+......+...... ..+....++..||.+|...|+.++|+++++...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~----- 330 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS----- 330 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----
Confidence 65300 000 011122222222111 1245666899999999999999999999988764
Q ss_pred cCCCChhHHHHHHHHHH
Q 004812 676 LGTANPDVDDEKRRLAE 692 (729)
Q Consensus 676 ~~~~~p~~~~~~~~La~ 692 (729)
..+|-....+...+.
T Consensus 331 --~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 331 --EYDQMRAGYWEFRRR 345 (349)
T ss_dssp --TTCGGGHHHHHHHHH
T ss_pred --hhChHHHHHHHHHHH
Confidence 336766655554443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=1.7e-10 Score=101.60 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=97.4
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
...|.....++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 346777888999999999999999999999999998 7888899999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
.|....+++.+|.++...|++++|+.+|++++.+.+..
T Consensus 82 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 -------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp -------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 33345678999999999999999999999999998865
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.23 E-value=2.5e-10 Score=98.50 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=108.1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.....+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence 345678899999999999999999999999862 113578999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCH
Q 004812 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~ 700 (729)
.|....++..+|.++...|++++|+.+|++++.+ .|....++..++.++...|++
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 7888889999999999999999999999999987 577778999999999999875
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.23 E-value=3e-11 Score=111.19 Aligned_cols=125 Identities=10% Similarity=0.108 Sum_probs=108.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
+...|++++|+..|++++... +....++..+|.+|...|++++|+.+|++++.+ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 456789999999999998862 123578999999999999999999999999998 6777889999
Q ss_pred HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 648 LAGT-YDAIGRL--DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 648 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|.+ +...|++ ++|+.+|++++.+ +|....+++.+|.++...|++++|+ ..|++++.++|+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 147 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCC
Confidence 9999 8899999 9999999999987 5778889999999999999999999 999999999997
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.22 E-value=1.6e-10 Score=104.80 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=94.3
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
+..+..+..+..+|.+++..|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 345667788899999999999999999999999998 6778889999999999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
.+....+++.+|.+|..+|++++|+.+|++++.+.+..
T Consensus 75 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 75 -------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 34447788999999999999999999999999988765
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.21 E-value=2e-10 Score=103.86 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (729)
..+..+..+|..++..|+|++|+..|.+++.+...... .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677999999999999999999999999987543211 456678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH-HHHHHHHHHHHhcch
Q 004812 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNE 532 (729)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 532 (729)
++.+ +|....+++.+|.+|..+|++++|+..|++++.+ .|... .+...++.+....++
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 7888999999999999999999999999999999 33333 445555555554443
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.21 E-value=3.5e-10 Score=97.53 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
..+.....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICID--- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---
Confidence 356678899999999999999999999999999986544 5788999999999999999999999999862
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004812 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659 (729)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 659 (729)
+....++..+|.++...|++++|+.+|++++.. .|....++..++.++..+|+++
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 77 -----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred -----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence 113568899999999999999999999999999 7888889999999999998863
No 165
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-10 Score=100.04 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=85.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.+.....+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 4555667777777777777777777777777765 5556677777777777777777777777777776
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (729)
.+....++..+|.++...|++++|+.+|++++.+.+.. ..++..++.++..+|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-------THHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcC
Confidence 22235567777777777777777777777777765544 2455666776666553
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.19 E-value=1.9e-10 Score=100.54 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.+..+..+|.++...|++++|+.+|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3578899999999999999999999999999 8888899999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|....+++.+|.++...|++++|+ ..|++++.++|+
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHChh
Confidence 5888899999999999999999999 999999999997
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.18 E-value=8.4e-11 Score=125.77 Aligned_cols=161 Identities=12% Similarity=0.149 Sum_probs=126.1
Q ss_pred cccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHhHHHHHHHHHH
Q 004812 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAA 273 (729)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~~~~la~ 273 (729)
-.++..+++.+.......|..+..+..+|..++..|+ |++|+.+|++|+.+.+...... ..+....++.++|.
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445566656666666678899999999999999997 9999999999999864321000 01233688999999
Q ss_pred HHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004812 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (729)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (729)
+|..+|+|++|+.+|++++.+. +.+ ..+++.+|.+|..+|++++|+.+|++++++ +|....++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-----p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~ 388 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-----SAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAAR 388 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-----Ccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 9999999999999999999986 333 345999999999999999999999999998 78888999
Q ss_pred HHHHHHHHHhcCHHHHHH-HHHHHHH
Q 004812 354 RYLAEAHVQALQFSEAQK-FCQMALD 378 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~-~~~~al~ 378 (729)
..++.++...+++++|.. .|.+++.
T Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988874 3444443
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.17 E-value=1e-09 Score=93.68 Aligned_cols=118 Identities=23% Similarity=0.403 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
...++..+|.++...|++++|+.+|++++...+ ....++..+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 356788999999999999999999999987621 13468899999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004812 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 698 (729)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 7777889999999999999999999999999987 5777888999999988765
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=7.7e-12 Score=134.34 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004812 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
..+..+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++.
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------ 70 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD------ 70 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------
Confidence 445667788999999999999999999999986654 6889999999999999999999999999861
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChHHHHHHHH------
Q 004812 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT--YDAIGRLDDAIEILE------ 666 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------ 666 (729)
+....++..+|.+|..+|++++|+.+|++++++ +|....++..++.+ +..+|++++|+..++
T Consensus 71 --p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 71 --KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 224678999999999999999999999999998 77777788888888 889999999999999
Q ss_pred -----HHHHHHHHHcCCCChh---HHHHHHHHHHHHHHhCCHhHHHH-HHHHHHHhh
Q 004812 667 -----FVVGIREEKLGTANPD---VDDEKRRLAELLKEAGRVRSRKA-QSLETLLDA 714 (729)
Q Consensus 667 -----~al~~~~~~~~~~~p~---~~~~~~~La~~~~~~g~~~~A~~-~~l~~al~~ 714 (729)
+++.+.....++.++. ....+..+...+...+...+... ..+.++.++
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~ei 197 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEV 197 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 6666554444555554 23344455555555555443321 344444333
No 170
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.16 E-value=1.7e-10 Score=106.08 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=104.6
Q ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004812 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (729)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (729)
+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|++++.+.+. ...++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------NAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--------CHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CHHHHHHH
Confidence 346789999999999999886544 578899999999999999999999999987421 25688899
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 607 GLA-CVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 607 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
|.+ +...|++ ++|+.+|++++.. +|....++..+|.+|...|++++|+.+|++++.+
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999 8899999 9999999999999 8888899999999999999999999999999976
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.14 E-value=5.4e-10 Score=97.56 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004812 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (729)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (729)
.+..+..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 36778999999999999999999999999872 123578999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
+|....+++.+|.+|..+|++++|+.+|++++.+..
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 888899999999999999999999999999999864
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=2e-09 Score=105.63 Aligned_cols=257 Identities=11% Similarity=0.037 Sum_probs=169.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (729)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (729)
.-.+..|+|..++.-..+ ..+..+. .....+.++|..+|++.... .+.|. ..+...
T Consensus 21 kn~fy~G~yq~~i~e~~~------~~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEK------FSKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHHTTTCHHHHTHHHHT------SSCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHh------cCccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 345678999998874321 1122233 34555677888888876421 11332 233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004812 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (729)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (729)
++..+. ++ |+..+++.+.. +... ..++..+|.++...|++++|+.++.+.+...+ ......
T Consensus 77 la~~~~--~~---a~~~l~~l~~~------~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKD------KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTT------SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhc------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence 444442 22 66666665543 1111 23456899999999999999999999865322 123457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhcC
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM--GLACVQRY--SINEAVELFEEARSILEQECG 635 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 635 (729)
++..++.++..+|+.+.|.+.++++.+..+. .......++..+ |++.+..| ++.+|..+|+++.+.
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d----~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~------ 207 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIED----TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT------ 207 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc----ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh------
Confidence 7788999999999999999999988665210 000011233444 44466666 999999999998765
Q ss_pred CCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004812 636 PYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT--ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 636 ~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
.|+ ....+++ ++..+|++++|...++.+++..-.+-.. .+|+.++++.+++.+....|+ +|. ++++++
T Consensus 208 --~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l~~qL 279 (310)
T 3mv2_B 208 --FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DLTNQL 279 (310)
T ss_dssp --SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HHHHHH
T ss_pred --CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HHHHHH
Confidence 554 2233333 8999999999999999777653110000 036788899999999999998 888 999999
Q ss_pred Hhhccc
Q 004812 712 LDANSR 717 (729)
Q Consensus 712 l~~~p~ 717 (729)
.+.+|+
T Consensus 280 ~~~~P~ 285 (310)
T 3mv2_B 280 VKLDHE 285 (310)
T ss_dssp HHTTCC
T ss_pred HHhCCC
Confidence 999997
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.14 E-value=2.7e-10 Score=117.79 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG--------ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
..+..+|..+...|++++|+..|++++++..... ....+....++.++|.+|..+|++++|+.+|++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 3456789999999999999999999999765421 0012345788999999999999999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004812 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (729)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (729)
+|....+++.+|.+|..+|++++|+.+|++++++ .|....++..|+.++...++++++.
T Consensus 303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999987 5778889999999999999998887
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=5e-10 Score=95.39 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (729)
.++.+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+..|++++++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~ 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C
Confidence 4678899999999999999999999998 7889999999999999999999999999999999 4
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
|....++..+|.++...|++++|+..|++++++.+..
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4456789999999999999999999999999887654
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=2.4e-09 Score=105.12 Aligned_cols=263 Identities=11% Similarity=-0.011 Sum_probs=169.1
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004812 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (729)
-.+..|+|..++.-.. ++.+. . .. .....+.+.|..+|++.... ...+. ..+...+
T Consensus 22 n~fy~G~yq~~i~e~~---~~~~~----~-~~--~~~~~~~Rs~iAlg~~~~~~-------------~~~~~-~~a~~~l 77 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIE---KFSKV----T-DN--TLLFYKAKTLLALGQYQSQD-------------PTSKL-GKVLDLY 77 (310)
T ss_dssp HHHTTTCHHHHTHHHH---TSSCC----C-CH--HHHHHHHHHHHHTTCCCCCC-------------SSSTT-HHHHHHH
T ss_pred HHHHhhHHHHHHHHHH---hcCcc----c-hH--HHHHHHHHHHHHcCCCccCC-------------CCCHH-HHHHHHH
Confidence 3556899988887332 22111 1 11 34666778888888876421 22332 2233333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (729)
+..+ . ++ |+..+++.+.. .+....++..+|.++...|++++|+.++.+++.. +. ......
T Consensus 78 a~~~-~-~~---a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~-~~~~le 137 (310)
T 3mv2_B 78 VQFL-D-TK---NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDN------DE-AEGTTE 137 (310)
T ss_dssp HHHH-T-TT---CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SC-STTHHH
T ss_pred HHHh-c-cc---HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CC-CcCcHH
Confidence 4333 2 22 66666665543 1222445579999999999999999999998665 11 134577
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhCCC
Q 004812 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLG--NYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 594 (729)
++..++.++..+|+.+.|.+.++++.+..++.. ...-.+...+ +++.+..| ++.+|..+|+++.+..
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~---~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------ 208 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV---SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------ 208 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc---ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------
Confidence 888999999999999999999999877754100 0001233344 44466667 9999999999975431
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY--HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
........+.+ ++..+|++++|...++.+++........+ +|+...++.+++.+...+|+ +|.++++++.+..
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 11111223333 89999999999999997776632210100 26678889999999999997 8889999888763
Q ss_pred HHHcCCCChhHH
Q 004812 673 EEKLGTANPDVD 684 (729)
Q Consensus 673 ~~~~~~~~p~~~ 684 (729)
|+||...
T Consensus 284 -----P~hp~i~ 290 (310)
T 3mv2_B 284 -----HEHAFIK 290 (310)
T ss_dssp -----CCCHHHH
T ss_pred -----CCChHHH
Confidence 5555443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.10 E-value=2.2e-09 Score=92.51 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (729)
.++.+|.++...|++++|+..|++++... +.......++..+|.++...|++++|+.+|++++.. +|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p 70 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------YP 70 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CC
Confidence 45788999999999999999999998763 223334578999999999999999999999999998 55
Q ss_pred hH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004812 640 DT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 640 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
+. ..+++.+|.+|..+|++++|+.+|++++...
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55 8899999999999999999999999999873
No 177
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.10 E-value=1.9e-09 Score=90.90 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (729)
+..+..+|.++...|++++|+.+|++++...+ ....++..+|.++...|++++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 46778899999999999999999999998621 13568999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 694 (729)
.|....++..+|.++...|++++|+.+|++++++ +|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 7888889999999999999999999999999965 577777888877764
No 178
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.10 E-value=2.1e-09 Score=91.63 Aligned_cols=118 Identities=27% Similarity=0.396 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------ 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 3567788888899999999999999988887 56667788888999999999999999999988872
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (729)
+....++..+|.++...|++++|+.++++++.+.+.. ..++..++.++...|
T Consensus 74 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 ---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHC
T ss_pred ---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHhcc
Confidence 2235677888999999999999999999888876544 356667777766544
No 179
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=1.6e-09 Score=91.27 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999998 7888889999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.|....++..+|.++...|++++|. ..|++++..+|+
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~ 104 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEAN 104 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCC
Confidence 5777889999999999999999999 999999999987
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.09 E-value=1.6e-10 Score=118.20 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--RK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
..+..+|..++..|+|++|+.+|++++.+...... .. ......++.++|.+|..+|++++|+.+|++++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999999987432100 00 0001138899999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHhCCHhHHHHHHH
Q 004812 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVRSRKAQSL 708 (729)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~-~~~g~~~~A~~~~l 708 (729)
+|....+++++|.+|..+|++++|+.+|++++++ +|....++..|+.+. ...+..+++. ..|
T Consensus 260 --------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~-~~~ 322 (338)
T 2if4_A 260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK-EMY 322 (338)
T ss_dssp --------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 8999999999999999999999999999999976 577888889999884 4456677777 999
Q ss_pred HHHHhhccc
Q 004812 709 ETLLDANSR 717 (729)
Q Consensus 709 ~~al~~~p~ 717 (729)
.+++...|+
T Consensus 323 ~~~l~~~p~ 331 (338)
T 2if4_A 323 KGIFKGKDE 331 (338)
T ss_dssp ---------
T ss_pred HHhhCCCCC
Confidence 999999987
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.08 E-value=1.2e-09 Score=112.88 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (729)
..+..+|..+...|++++|+..|++++.+.... ...+....++.++|.+|..+|++++|+.++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 457889999999999999999999999865442 145677889999999999999999999999999997
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004812 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (729)
Q Consensus 463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (729)
.|....+++.+|.+|..+|++++|+.+|++++++ .|....++..++.++..+++++++...
T Consensus 303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999 333456788899999999988887653
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.08 E-value=8.3e-10 Score=95.18 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004812 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p 681 (729)
.++.+|.++...|++++|+..|++++.. .++++....+++.+|.++...|++++|+.+|++++... +.++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 4678899999999999999999999987 23344444799999999999999999999999999873 4444
Q ss_pred hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
....+++.+|.++...|++++|+ ..|++++..+|+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~ 108 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQYPG 108 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCC
Confidence 44889999999999999999999 999999999997
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=1.7e-10 Score=125.93 Aligned_cols=191 Identities=10% Similarity=0.066 Sum_probs=163.5
Q ss_pred HcCCH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHhCCCCC
Q 004812 486 RTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE----------LEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 486 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 554 (729)
..|++ ++|+..+.+++.+ .|....+|+..+.++...|+ +++++.++++++...++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---- 106 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---- 106 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred HcCCCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence 34444 6789999999999 56668899999999999998 999999999999988777
Q ss_pred CcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004812 555 STVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-SINEAVELFEEARSILE 631 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 631 (729)
..+|+..+.++...+ ++++|+.++.+++++- +....+|...+.++...| .++++++++.++++.
T Consensus 107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 588999999999999 7799999999999972 224578999999999999 999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 632 QECGPYHPDTLGVYSNLAGTYDAI--------------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
+|....+|..++.++..+ +.+++|++++.+++.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 899999999999999885 5679999999999987 688889999999999999
Q ss_pred CCHhH------------HHHHHHHHHHhhccc
Q 004812 698 GRVRS------------RKAQSLETLLDANSR 717 (729)
Q Consensus 698 g~~~~------------A~~~~l~~al~~~p~ 717 (729)
+++++ |+ ..|.+++.++|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~f~~~i~~~~~ 270 (567)
T 1dce_A 240 EPHDVLCCVHVSREEACLS-VCFSRPLTVGSR 270 (567)
T ss_dssp CCCSCEEEEEEETTTTEEE-EEEEEEECTTBT
T ss_pred CCccceeeeeeccCCceEE-EEeccceecccc
Confidence 88666 44 445666665553
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.07 E-value=3.1e-11 Score=129.63 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
..+..+|.++...|++++|+.+|++++++. +....++.++|.+|..+|++++|+.+|++++++ +
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 70 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D 70 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 345567888999999999999999999872 224688999999999999999999999999998 8
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH--HHHhCCHhHHHHHHHH-------
Q 004812 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL--LKEAGRVRSRKAQSLE------- 709 (729)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~--~~~~g~~~~A~~~~l~------- 709 (729)
|....++.++|.+|..+|++++|+.+|++++++ +|....++..++.+ +...|++++|+ ..++
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~~~~~~~~ 141 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSVVD 141 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC-------CCSTTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHh-ccccccchhHh
Confidence 899999999999999999999999999999987 46666778888888 88999999999 9999
Q ss_pred ----HHHhhccc
Q 004812 710 ----TLLDANSR 717 (729)
Q Consensus 710 ----~al~~~p~ 717 (729)
+++.++|+
T Consensus 142 ~~~~~al~~~~~ 153 (477)
T 1wao_1 142 SLDIESMTIEDE 153 (477)
T ss_dssp CCTTSSCCCCTT
T ss_pred hhhhhhcccccc
Confidence 77777766
No 185
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=5.5e-08 Score=104.45 Aligned_cols=369 Identities=9% Similarity=-0.007 Sum_probs=224.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHH
Q 004812 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (729)
Q Consensus 237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 316 (729)
+...|...|++++..++ . |+++.+..+|++++... + ...+|.....
T Consensus 10 ~i~~aR~vyer~l~~~P---------~---------------~~~e~~~~iferal~~~-----p-----s~~LW~~Y~~ 55 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYM---------S---------------KDYRSLESLFGRCLKKS-----Y-----NLDLWMLYIE 55 (493)
T ss_dssp --CCHHHHHHHHHHHHH---------T---------------TCHHHHHHHHHHHSTTC-----C-----CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCC---------C---------------CCHHHHHHHHHHHhccC-----C-----CHHHHHHHHH
Confidence 37778888888888773 2 88999999999999864 2 1223555544
Q ss_pred HHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004812 317 TYAMLGQ-LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----QALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (729)
Q Consensus 317 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (729)
.....+. .+.....|+.++... |. ++.....|...+..+. ..++.+.+...|++++.. |.. ..
T Consensus 56 f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~~-- 123 (493)
T 2uy1_A 56 YVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----SL-- 123 (493)
T ss_dssp HHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----TH--
T ss_pred HHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----hH--
Confidence 4444443 345566777777652 32 3445567777666543 357788999999999974 211 11
Q ss_pred HHHHHHHHH-------------HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC---------HH
Q 004812 392 AADRRLMGL-------------ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR---------YD 449 (729)
Q Consensus 392 a~~~~~lg~-------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~ 449 (729)
...|..... +......+..|...|..+....... . ...|...... ..++ ..
T Consensus 124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~--s---~~~W~~y~~~--E~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW--S---VKNAARLIDL--EMENGMKLGGRPHES 196 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--S---HHHHHHHHHH--HHTCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--c---HHHHHHHHHH--HhcCCccCcchhhHH
Confidence 111111111 1112234445555555554433221 1 1233332222 2222 34
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 004812 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (729)
Q Consensus 450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (729)
.....|++++.. .|....+|...+..+...|+.++|...|++|+.. ... . ..+...+... .
T Consensus 197 Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~~y~~~~-e 257 (493)
T 2uy1_A 197 RMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSLYYGLVM-D 257 (493)
T ss_dssp HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHHHHHHHT-T
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHHHHHhhc-c
Confidence 567788888887 5677889999999999999999999999999998 432 1 1222222221 1
Q ss_pred cchHHHHHHHHHHHHHHH---HhCCC---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004812 530 MNELEQAIKLLQKALKIY---NDAPG---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (729)
Q Consensus 530 ~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (729)
.++ . +++..... ....+ .......+|...+......++.+.|...|++| .. .. . ...+|
T Consensus 258 ~~~---~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~-~---~~~v~ 322 (493)
T 2uy1_A 258 EEA---V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EG-V---GPHVF 322 (493)
T ss_dssp CTH---H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SC-C---CHHHH
T ss_pred hhH---H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CC-C---ChHHH
Confidence 111 1 22222111 10000 01122456777788887888999999999988 21 11 1 12455
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 604 NQMGLACVQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 604 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
...|.+....+ +++.|..+|+.+++. .|+....+...+......|+.+.|..+|+++. .
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------------k 382 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRLE------------K 382 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------------C
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------H
Confidence 55666666555 699999999999987 34444455667778888999999999999872 1
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
....+......-...|+.+.+. ..+++++.
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r-~v~~~~~~ 412 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFR-ELVDQKMD 412 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 2455666677777889999888 88888875
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=2.7e-09 Score=91.83 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004812 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (729)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (729)
.+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...... .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~ 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--R 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--c
Confidence 4567889999999999999999999999998 67778899999999999999999999999999996542 2
Q ss_pred CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004812 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (729)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (729)
........++..+|.++...|++++|+.+|++++.+.+
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 23444478899999999999999999999999998743
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.4e-09 Score=94.64 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
..+..+..+|..+...|++++|+.+|++++.+. ........++..+|.++...|++++|+.+|++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 346778899999999999999999999998752 122223688999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004812 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 695 (729)
+|....+++.+|.++..+|++++|+.+|++++.+ +|....++..++.+..
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG 144 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence 7888889999999999999999999999999987 5666677777776643
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.04 E-value=3e-09 Score=91.60 Aligned_cols=109 Identities=12% Similarity=0.229 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
.+..+..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+.... +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 3567889999999999999999999999998 78888899999999999999999999999999886321 12
Q ss_pred CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+....+++.+|.++...|++++|. ..|++++..+|+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 111 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRT 111 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence 22233889999999999999999999 999999999886
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.02 E-value=8.2e-10 Score=92.21 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004812 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 680 (729)
.++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++++ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 56788999999999999999999999998 7888889999999999999999999999999976 4
Q ss_pred hh--HHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHhhccc
Q 004812 681 PD--VDDEKRRLAELLKEA-GRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 681 p~--~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~~p~ 717 (729)
|. ...++..+|.++... |++++|+ ..+++++...|.
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~ 109 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHH 109 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCC
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccC
Confidence 66 788999999999999 9999999 999999999886
No 190
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.9e-09 Score=94.10 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
....+..+|..+...|++++|+.+|++++.. .|+. ..++..+|.+|...|++++|+.++++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 4678899999999999999999999999987 5654 789999999999999999999999999987
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 676 ~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|....+++.+|.++...|++++|. ..|++++.++|+
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~ 131 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPK 131 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSS
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence 5777889999999999999999999 999999999997
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=3.2e-09 Score=115.90 Aligned_cols=177 Identities=9% Similarity=0.017 Sum_probs=155.2
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCCCC
Q 004812 444 SLSR-YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 444 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
..|+ .++|+..+.+++.+ +|....+|+..+.++...|+ +++++.++++++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------- 102 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------- 102 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence 3444 46789999999999 89999999999999999998 99999999999998
Q ss_pred hHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004812 513 PEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLR 589 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 589 (729)
.|....+|...+.++...+ ++++|++++.+++++.++. ..+|...+.++...| .++++++++.++++.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 5556789999999999999 7799999999999998776 588999999999999 899999999998874
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004812 590 AIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (729)
.+....+|+.++.++... +.+++|++++.+|+.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 122457889999888875 5689999999999999 899999999999999998
Q ss_pred CChHH
Q 004812 656 GRLDD 660 (729)
Q Consensus 656 g~~~~ 660 (729)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88665
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=8.7e-10 Score=96.08 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=82.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHHcCCCCh
Q 004812 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL----------DDAIEILEFVVGIREEKLGTANP 681 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~p 681 (729)
+.+.+++|+..|++++++ +|....++.++|.++..++++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999999 999999999999999999876 5999999999998 79
Q ss_pred hHHHHHHHHHHHHHHhC-----------CHhHHHHHHHHHHHhhccc
Q 004812 682 DVDDEKRRLAELLKEAG-----------RVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 682 ~~~~~~~~La~~~~~~g-----------~~~~A~~~~l~~al~~~p~ 717 (729)
+...++++||.+|..+| ++++|+ .+|++|++++|+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~-~~~~kAl~l~P~ 123 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPD 123 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH-HHHHHHHHhCCC
Confidence 99999999999999885 899999 999999999998
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.96 E-value=1.4e-09 Score=92.12 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=80.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004812 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (729)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 691 (729)
.+|++++|+.+|++++++ +.++|....++..+|.+|..+|++++|+.+|++++++ +|+...+++.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 368899999999999986 1224888899999999999999999999999999987 688889999999
Q ss_pred HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.++...|++++|+ ..|++++..+|+
T Consensus 69 ~~~~~~g~~~~A~-~~~~~al~~~p~ 93 (117)
T 3k9i_A 69 MVLYNLGRYEQGV-ELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 9999999999999 999999999886
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.96 E-value=1.1e-09 Score=112.12 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
.++.++|.+|..+|++++|+.+|++++++ .+....+++++|.+|..+|++++|+.+|++++.+.+..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~---- 297 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE---------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD---- 297 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----
Confidence 48899999999999999999999999998 34457889999999999999999999999999988765
Q ss_pred CcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 004812 555 STVAGIEAQMGVM-YYMLGNYSDSYDSFKNAISKL 588 (729)
Q Consensus 555 ~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 588 (729)
..++..++.+ ....+..+++...|.+++...
T Consensus 298 ---~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 298 ---KAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp -----------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3455667776 345567788888888887764
No 195
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.95 E-value=2.4e-09 Score=90.57 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=76.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004812 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (729)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (729)
.+|++++|+.+|++++++. ...+....++..+|.+|...|++++|+.+|++++++ +|+...++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 4689999999999999851 112446789999999999999999999999999999 888899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 004812 650 GTYDAIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~ 672 (729)
.++..+|++++|+.+|++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 196
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=2e-09 Score=89.85 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
..++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|+++++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----- 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence 456788999999999999999999999988 5667788999999999999999999999999987211
Q ss_pred ChHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Q 004812 512 PPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYN 548 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 548 (729)
.....++..+|.++... |++++|+.++++++...+
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 01466889999999999 999999999999887654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.85 E-value=7.4e-09 Score=90.21 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=81.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcCCCCCC
Q 004812 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL----------RESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 512 (729)
.+.+.|++|+..+++++++ .|..+.+|.++|.++...+++ ++|+..|++++++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------- 75 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------- 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------
Confidence 3556789999999999999 899999999999999999876 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~ 550 (729)
.|....+|+++|.+|..+| ++++|+.+|++|+++.|+.
T Consensus 76 dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 76 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 5666889999999999885 8999999999999997754
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=4.2e-08 Score=78.20 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 677 (729)
....++..+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 35678999999999999999999999999998 7888889999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHhC
Q 004812 678 TANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 678 ~~~p~~~~~~~~La~~~~~~g 698 (729)
+|....++..+|.++...|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 5778889999999998765
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=1.5e-06 Score=93.26 Aligned_cols=343 Identities=10% Similarity=-0.023 Sum_probs=197.7
Q ss_pred HcC-ChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004812 277 SLG-QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (729)
Q Consensus 277 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (729)
..| ++..|...|++++...+ .|+++.+..+|++++.. .| ....|..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P------------------------~~~~e~~~~iferal~~--------~p-s~~LW~~ 52 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYM------------------------SKDYRSLESLFGRCLKK--------SY-NLDLWML 52 (493)
T ss_dssp ------CCHHHHHHHHHHHHH------------------------TTCHHHHHHHHHHHSTT--------CC-CHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCC------------------------CCCHHHHHHHHHHHhcc--------CC-CHHHHHH
Confidence 346 48888888988887641 17899999999999986 35 4456666
Q ss_pred HHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004812 356 LAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAE 430 (729)
Q Consensus 356 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (729)
........+. .+.....|+.++....... .+. .+|......+. ..++.+.+...|++|+.. + ...
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P-~~~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQFENYW--DSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----P-MGS 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHHSTTCT--TCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----C-CTT
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHcCCCc--ccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----h-hhh
Confidence 6666555553 3556677888877543222 111 33444444332 346788899999999752 1 111
Q ss_pred HHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--CC-----H
Q 004812 431 VASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT--GK-----L 490 (729)
Q Consensus 431 ~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~-----~ 490 (729)
....|......- .....+..|...|+.+...... .....|..+...-... +- .
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~ 195 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHE 195 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhH
Confidence 122222111111 1122344445445544443211 0112444433332211 11 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 004812 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (729)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (729)
......|++++.... ....+|...+..+...|+.++|...|++|+.. |... .++...+..
T Consensus 196 ~Rv~~~ye~al~~~p---------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-------~l~~~y~~~--- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY---------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-------FLSLYYGLV--- 255 (493)
T ss_dssp HHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-------HHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-------HHHHHHHhh---
Confidence 456788999988732 23667888899999999999999999999998 5431 122222221
Q ss_pred cCCHHHHHHHHHHHHHHHHHhC-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004812 571 LGNYSDSYDSFKNAISKLRAIG-----ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (729)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (729)
.+.++. +++......... .........+|...+..+.+.++.+.|...|++| .. .+....++
T Consensus 256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--------~~~~~~v~ 322 (493)
T 2uy1_A 256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--------EGVGPHVF 322 (493)
T ss_dssp -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------SCCCHHHH
T ss_pred -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------CCCChHHH
Confidence 111111 222222110000 0011223466777888888888999999999998 32 11233466
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004812 646 SNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (729)
Q Consensus 646 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (729)
...|.+....+ +.+.|...|+.+++.+ ++.| ..+...+......|+.+.|. ..|+.+
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR-~l~er~ 380 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENAR-ALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHH-HHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 66666666556 6999999999999863 3334 34555677888899999988 777765
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.5e-08 Score=84.50 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
+.++..+|.++...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+..|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999999 8888899999999999999999999999999976
Q ss_pred ChhH------HHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004812 680 NPDV------DDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 680 ~p~~------~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+|.. ..+++.+|.++...|+++.|+ ..++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 102 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV-VEVD 102 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS-SSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH-hHHH
Confidence 4555 788999999999999988887 5443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.70 E-value=6.1e-08 Score=81.44 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004812 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (729)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 697 (729)
+|+..|+++++. +|....+++.+|.+|...|++++|+.+|++++.+ +|....+++.+|.+|...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 578889999887 7888899999999999999999999999999987 578888999999999999
Q ss_pred CCHhHHHHHHHHHHHhhccc
Q 004812 698 GRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 698 g~~~~A~~~~l~~al~~~p~ 717 (729)
|++++|+ ..|++++.++|.
T Consensus 67 g~~~~A~-~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGAR-QAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHhccc
Confidence 9999999 999999999986
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.69 E-value=1.4e-07 Score=79.26 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004812 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (729)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (729)
++|+..|++++... +.++ .+++.+|.+|...|++++|+.+|++++.+ +|....++..+|.+|.
T Consensus 2 ~~a~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQG-----TDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTT-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence 46889999999875 4443 35899999999999999999999999998 7888899999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCC
Q 004812 362 QALQFSEAQKFCQMALDIHKDNGS 385 (729)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~ 385 (729)
..|++++|+..|++++.+.+....
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999887653
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=2.2e-07 Score=73.88 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (729)
.+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3455678888999999999999999999999987 6777788999999999999999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcc
Q 004812 508 VPGVPPEEIASGLTDVSSIYESMN 531 (729)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g 531 (729)
.|....++..+|.++...|
T Consensus 73 -----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHHHhcC
Confidence 3334567888888877654
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.7e-08 Score=84.06 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004812 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (729)
+..+..+|.++...|++++|+..|++++.+ .|....++.++|.++...|++++|+..|++++.+.... .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA---E 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST---T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---c
Confidence 467889999999999999999999999998 78888999999999999999999999999999884321 1
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (729)
+......++..+|.++...|+++.|+..++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 223346788899999998888777665443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.56 E-value=3.5e-07 Score=74.50 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
...++..+|.+|...|++++|+.+|++++++ +|....+++.+|.+|..+|++++|+..|++++++....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--- 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE--- 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC---
Confidence 3578999999999999999999999999999 88888899999999999999999999999999885331
Q ss_pred CChhHHHHHHHHHHHHHHhCC
Q 004812 679 ANPDVDDEKRRLAELLKEAGR 699 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~ 699 (729)
........+..++...+.
T Consensus 75 ---~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 75 ---GTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp ---SCHHHHHHHHHHHHHHHT
T ss_pred ---CchhHHHHHHHHHHHccc
Confidence 123344445555544443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.56 E-value=7e-07 Score=77.61 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004812 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (729)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (729)
+++++|+.+|+++.+.. ... .. +|.+|...+.+++|+.+|+++.+. ....+++++|.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 57899999999998753 221 22 899999999999999999999874 1357899999999
Q ss_pred HH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004812 611 VQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGI 671 (729)
Q Consensus 611 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 671 (729)
.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 98 89999999999999875 335689999999999 99999999999999874
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.56 E-value=1.3e-07 Score=76.80 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004812 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (729)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~ 682 (729)
..+|.++...|++++|+.+|+++++. +|.... +++.+|.+|..+|++++|+.+|++++.+ +|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 45788999999999999999999998 888888 9999999999999999999999999987 466
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
...++.. +.+.++. ..|++++..+|+
T Consensus 68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~ 93 (99)
T 2kc7_A 68 SPALQAR--------KMVMDIL-NFYNKDMYNQLE 93 (99)
T ss_dssp STHHHHH--------HHHHHHH-HHHCCTTHHHHC
T ss_pred cHHHHHH--------HHHHHHH-HHHHHHhccCcc
Confidence 5555533 5667888 888888888887
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.55 E-value=2e-07 Score=76.00 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+|+...+++.+|.+|..+|++++|+.+|++++++ +|....+++.||.+|...|++++|+ ..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhhc
Confidence 5777889999999999999999999999999987 6888889999999999999999999 999999999876
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=1.6e-06 Score=75.33 Aligned_cols=112 Identities=11% Similarity=0.096 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004812 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (729)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (729)
+++++|+.+|+++.+. + + . .+. +|.+|...+.+++|+.+|+++.+. ....++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~----g--~-~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----N--E-M---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT----T--C-T---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC----C--C-H---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 4688999999998864 1 1 1 223 999999999999999999999875 345689999999
Q ss_pred HHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhcc
Q 004812 652 YDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 652 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p 716 (729)
|.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+ .+|+++.+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~~g~ 128 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAV-KTFEKACRLGS 128 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHHTTC
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHHCCC
Confidence 999 89999999999999863 446789999999999 89999999 99999998754
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.39 E-value=1.2e-06 Score=70.99 Aligned_cols=90 Identities=9% Similarity=0.138 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004812 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (729)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (729)
+.+|.++...|++++|+..|+++++. .|.... ++..+|.+|...|++++|+.+|++++++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------- 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-------- 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Confidence 56788999999999999999999998 677778 9999999999999999999999999999322
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
...++.. +.+.+++.+|++++...+..
T Consensus 68 -~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 68 -SPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -STHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred -cHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 2223321 67888889998888887765
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.32 E-value=0.00073 Score=68.71 Aligned_cols=214 Identities=13% Similarity=0.081 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVP 512 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (729)
+...||.+|...|++++-..++......+.... ....+.....+-..+.. -+..+.-+..+.++++..... ..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~r 94 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---KR 94 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HH
Confidence 456778888888888777777666554432221 22333434444444433 344566677777777776541 11
Q ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004812 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (729)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (729)
.......-..||.+|+..|+|.+|.+.+.+.++.+... ++...+..++.....+|...+++.++...+.++......+.
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 11112234589999999999999999999999988775 45567778888999999999999999999999998876653
Q ss_pred CCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004812 593 ERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658 (729)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 658 (729)
.++...+.....-|.++. ..++|..|..+|-++..-+... ..|....+...++.+-...++.
T Consensus 174 -~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 174 -CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred -CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence 344556777778899999 8999999999999997665432 2354444555555555555553
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.24 E-value=1.1e-05 Score=76.93 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHHcCCCChhH-HHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAI-----GRLDDAIEILEFVVGIREEKLGTANPDV-DDEK 687 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~p~~-~~~~ 687 (729)
...|...+++++++ +|. ...++..||.+|... |+.++|..+|++++++ +|+. ..++
T Consensus 179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~ 242 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHH 242 (301)
T ss_dssp HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHH
T ss_pred HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHH
Confidence 67899999999999 888 455999999999995 9999999999999998 6865 8899
Q ss_pred HHHHHHHHH-hCCHhHHHHHHHHHHHhhccc
Q 004812 688 RRLAELLKE-AGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 688 ~~La~~~~~-~g~~~~A~~~~l~~al~~~p~ 717 (729)
+.+|..+.. .|++++|. ..|++++..+|.
T Consensus 243 v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~ 272 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFD-EALDRALAIDPE 272 (301)
T ss_dssp HHHHHHTTTTTTCHHHHH-HHHHHHHHCCGG
T ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHcCCCC
Confidence 999999988 49999999 999999999987
No 213
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.18 E-value=0.00048 Score=70.01 Aligned_cols=212 Identities=15% Similarity=0.102 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004812 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHP 471 (729)
Q Consensus 393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (729)
.+...||.+|...|++++-.+++......+.... ....+.+...+-..+.. -+..+.-++.+..+++-++.. ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r 94 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KR 94 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HH
Confidence 3478899999999999999998876543332221 12233333444444433 355666677777777765532 12
Q ss_pred hHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004812 472 AVAS--VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 472 ~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (729)
.... .-..+|.+|+..|+|.+|...+.+.++.+.+. ++......++..-..+|...+++.++..++.++......
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 2222 44589999999999999999999999988773 345677888999999999999999999999999998877
Q ss_pred CCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004812 550 APGQQSTVAGIEAQMGVMYY-MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (729)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (729)
.+.++...+.+...-|.++. ..++|..|..+|-++..-+...+ .+....++..++.+-...++
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence 65455566777788899999 89999999999999876554322 22223444555555555555
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.17 E-value=3.4e-05 Score=77.06 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhc
Q 004812 562 AQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY----SINEAVELFEEARSILEQEC 634 (729)
Q Consensus 562 ~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~ 634 (729)
+..|..+...++ +.+|+.+|++|+++ .+.++.++..++.+|.... ........+.+++......
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~- 270 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL- 270 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-
Confidence 344555555443 57899999999997 2334566666666665321 1122233334444422221
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
...|....++..++..+...|++++|+..+++++.+ +|. ..++..+|.++...|++++|+ +.|++|+.+
T Consensus 271 -~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL 339 (372)
T 3ly7_A 271 -PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNL 339 (372)
T ss_dssp -GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred -ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhc
Confidence 124667778888999888899999999999999998 344 567889999999999999999 999999999
Q ss_pred ccc
Q 004812 715 NSR 717 (729)
Q Consensus 715 ~p~ 717 (729)
+|.
T Consensus 340 ~P~ 342 (372)
T 3ly7_A 340 RPG 342 (372)
T ss_dssp SCS
T ss_pred CCC
Confidence 997
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.14 E-value=0.0001 Score=70.40 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CC
Q 004812 428 DAEVASVDCSIGDTYLS-----LS------RYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRT-----GK 489 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~ 489 (729)
.+..+..+++.|.+... .| ....|...+++++++ +|. ...+|..+|.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 45556666666665532 23 357788889999998 677 567999999999995 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhC
Q 004812 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 550 (729)
.++|..+|++++++... ....+++..|..+.. .|++++|..++++++..-+..
T Consensus 220 ~ekA~~~ferAL~LnP~--------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSA--------HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCCT--------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhCCC--------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999321 125678888998888 599999999999999987764
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.14 E-value=3e-05 Score=63.25 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (729)
.-++.+|..++..|+|..|+.+|++|++....... .......++..+|.++.++|+++.|+.++++++.+ .
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence 45678999999999999999999999998654321 12335688999999999999999999999999999 7
Q ss_pred hhHHHHHHHHH
Q 004812 639 PDTLGVYSNLA 649 (729)
Q Consensus 639 ~~~~~~~~~la 649 (729)
|+...+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 88877777776
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.10 E-value=4.2e-05 Score=62.37 Aligned_cols=82 Identities=17% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004812 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (729)
Q Consensus 392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (729)
+..++.+|..++..|+|..|+.+|++|+....... .......++..+|.++..+|+++.|+.++++++.+ .
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence 34578999999999999999999999998765443 23567788999999999999999999999999998 6
Q ss_pred hhHHHHHHHHH
Q 004812 471 PAVASVFVRLA 481 (729)
Q Consensus 471 ~~~~~~~~~la 481 (729)
|....+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 77777777665
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.08 E-value=0.00012 Score=73.19 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004812 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (729)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~---g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (729)
.+.+|+.+|++++++.|... .++-.++.+|... + ........+..++.........+..+.++..++.
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a--------~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal 285 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFT--------YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 285 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence 46899999999999987653 3455555555321 1 1222333344444433344455666778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.+...|++++|+..+++|+.+ ++. ..++..+|.++...|++++|++.|.+|+.+
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888899999999999999999 443 567889999999999999999999999999
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.03 E-value=2e-05 Score=62.52 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004812 638 HPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
+|+...++..+|.++...++ .++|..++++++++ +|+...+++.||.+++..|++++|+ .+++++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 46667789999999987666 79999999999998 7999999999999999999999999 999999999
Q ss_pred ccc
Q 004812 715 NSR 717 (729)
Q Consensus 715 ~p~ 717 (729)
+|.
T Consensus 73 ~p~ 75 (93)
T 3bee_A 73 NDP 75 (93)
T ss_dssp CCT
T ss_pred CCC
Confidence 987
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.02 E-value=4.5e-05 Score=65.80 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (729)
-..++.....++..+. |+.|+-.+..++.+.+...+..+....+.++..+|..++..++|..|...|++||...+....
T Consensus 20 ~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3467889999999997 999999999999887554322233456788999999999999999999999999887653221
Q ss_pred ccc----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004812 301 QEH----------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (729)
Q Consensus 301 ~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (729)
... .....++.+.++.||..++++.+|+..++..-.. .....+...||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---------~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---------QRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---------GCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---------hcCHHHHHHHHHHh
Confidence 110 1123467899999999999999999987653211 33455666677655
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.02 E-value=0.00024 Score=76.13 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---------LRESKSYCENALRIY 504 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 504 (729)
.+..+-..+.+.|++++|+.+|+++... .-.....+|..|-.++...+. .++|..+|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455567888999999999999988764 122334566767666665443 67888888877654
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (729)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (729)
+. .| ...+|..+...|.+.|++++|..+|++.... |..+. ..+|..+-..|.+.|+.++|..+|++.
T Consensus 100 -----G~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KV-VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TC-CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 21 12 2457888999999999999999999987653 33332 357888899999999999999999987
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.+. +- .+ ...+|..+-.+|.+.|+.++|.++|++..+.
T Consensus 167 ~~~----G~-~P--d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES----EV-VP--EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT----TC-CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc----CC-CC--CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 652 22 22 2468889999999999999999999998664
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.99 E-value=0.00016 Score=62.42 Aligned_cols=127 Identities=17% Similarity=0.007 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--
Q 004812 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP-- 636 (729)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 636 (729)
++..-...++..|.|+.|+.....++.+.....+. .+.....++..+|.+++..++|..|...|++|++..+.+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556777888999999999999999886554332 345567789999999999999999999999999987743211
Q ss_pred ---------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004812 637 ---------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (729)
Q Consensus 637 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 695 (729)
+.+...++.+.+|.||..+|++++|+..++.. |....++.+...||.+|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHhc
Confidence 12234578899999999999999999988754 223455666777777663
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=4.3e-05 Score=65.67 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLA 691 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La 691 (729)
...+.+.|.+.+.. .+....+.+++|+++.+.. +.++++.+++..++. +.| ...++++.||
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 34555666666554 4566789999999999988 667999999998875 136 6789999999
Q ss_pred HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+.+.|+|++|. .+++.+|+++|+
T Consensus 79 v~~~kl~~Y~~A~-~y~~~lL~ieP~ 103 (152)
T 1pc2_A 79 VGNYRLKEYEKAL-KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHTSCHHHHH-HHHHHHHHHCTT
T ss_pred HHHHHccCHHHHH-HHHHHHHhcCCC
Confidence 9999999999999 999999999996
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.98 E-value=0.00021 Score=76.58 Aligned_cols=168 Identities=11% Similarity=-0.049 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHH
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---------QFSEAQKFCQMALDIHK 381 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~ 381 (729)
+..+-..+.+.|++++|+.+|+++.... -.|+ ..+|..|-.++...+ .+++|..+|++.....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G- 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNG------VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK- 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-
Confidence 4556688899999999999999987651 1233 345666655655433 4788888888876532
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
..+ + ..+|..+...|...|++++|+.+|++... .+..|+ ..+|..+-..|...|+.++|..+|++..+.
T Consensus 101 --~~P-d---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 101 --VVP-N---EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp --CCC-C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --CCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111 1 35788999999999999999999987643 333444 356788889999999999999999987654
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (729)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (729)
.......+|..|...|.+.|+.++|..++++..+..
T Consensus 170 -------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 170 -------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp -------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 123345788999999999999999999999988773
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.84 E-value=0.0001 Score=58.31 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 600 GVALNQMGLACVQRYS---INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
+.++..+|.+++..++ .++|..++++++.+ +|+...+++.+|..+...|+|++|+.+|+++++..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~---- 73 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN---- 73 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 4678888998876665 79999999999999 99999999999999999999999999999998642
Q ss_pred CCCChhHHHHHHHHHH
Q 004812 677 GTANPDVDDEKRRLAE 692 (729)
Q Consensus 677 ~~~~p~~~~~~~~La~ 692 (729)
+..|....+...+..
T Consensus 74 -p~~~~~~~i~~~I~~ 88 (93)
T 3bee_A 74 -DPNLDRVTIIESINK 88 (93)
T ss_dssp -CTTCCHHHHHHHHHH
T ss_pred -CCCccHHHHHHHHHH
Confidence 334444444444433
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.70 E-value=0.00048 Score=59.15 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC-h-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004812 599 FGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYH-P-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (729)
...+.+++|+++.+.+ +.++++.+|+..++. + | ...+++++||..|.++|+|++|+.++++++++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 3578899999999988 677999999999987 5 6 56889999999999999999999999999998
Q ss_pred HHcCCCChhHHHHHH
Q 004812 674 EKLGTANPDVDDEKR 688 (729)
Q Consensus 674 ~~~~~~~p~~~~~~~ 688 (729)
+|++..+..
T Consensus 101 ------eP~n~QA~~ 109 (152)
T 1pc2_A 101 ------EPQNNQAKE 109 (152)
T ss_dssp ------CTTCHHHHH
T ss_pred ------CCCCHHHHH
Confidence 576655543
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.018 Score=60.23 Aligned_cols=218 Identities=12% Similarity=0.044 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
|+++.|++.+....+..+...+......++..+..++...++|+...+++.-.... .+. .+...........-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk----r~q-lk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK----HGQ-LKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT----TTT-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----hhh-hHHHHHHHHHHHHHHH
Confidence 56788888775554555556666666778888889999999998877765432221 111 1211122222222222
Q ss_pred -HcCCHHHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004812 486 -RTGKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (729)
Q Consensus 486 -~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (729)
.....+. ......+........+.. ....+.....|+.+|...|++.+|...+.....-.... .+......++.
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 2222221 222233333322221211 22356777889999999999999999998876443222 22335667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
....+|...+++.+|...+.++........ ..+......+...|.++...++|.+|..+|.++......
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 899999999999999999999865443332 233445667888899999999999999999999886544
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.026 Score=59.09 Aligned_cols=220 Identities=12% Similarity=-0.007 Sum_probs=141.4
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004812 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (729)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (729)
++++.|++.+....+..+...+. .....++..+..++...|+++...+++.... ...+..............-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHH
Confidence 67888887765544444433332 2224567778889999999998877664322 222222222222222222222
Q ss_pred -HcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004812 444 -SLSRYDEAGFAYQKALTAFKTNKGEN---HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (729)
Q Consensus 444 -~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (729)
.....+. ......+.......... ....+.....|+.+|...|++.+|...+.....-... ..+.......
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve~ 179 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQF 179 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHHH
Confidence 1222111 11112222111111100 1235677789999999999999999999987654433 3446677888
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (729)
+.....+|...+++.+|..++.++..........+......+...|.++...++|.+|..+|..+.......++
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999999876665554555566777888999999999999999999999887654443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.14 E-value=0.0033 Score=51.84 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD---AIEILEFVVGIREEKLGTANP-DVDDEKRRLA 691 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La 691 (729)
...+...|.+.+.. .+....+.+++|+++.+..+..+ ++.+++.. +....| ...+.++.||
T Consensus 17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l-------~~~~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL-------LPKGSKEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH-------TTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------HhcCCcchHHHHHHHHH
Confidence 34555666666554 44566789999999999887665 55555544 444446 6789999999
Q ss_pred HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+.+.|+|.+|. .+++.+|+..|+
T Consensus 82 vg~yklg~Y~~A~-~~~~~lL~~eP~ 106 (126)
T 1nzn_A 82 VGNYRLKEYEKAL-KYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred HHHHHhhhHHHHH-HHHHHHHHhCCC
Confidence 9999999999999 999999999996
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.84 E-value=0.0075 Score=50.80 Aligned_cols=104 Identities=13% Similarity=-0.017 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 559 GIEAQMGVMYYMLGNY------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 559 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
..|........+.|+. ++-+..|++|+...+.........+...|...|.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 4556666666666877 77888899888865443333444566777777765 5669999999999999997
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
+...+.++...|..-.++|+...|...+.+++.+
T Consensus 90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5566889999999999999999999999999986
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.74 E-value=0.015 Score=48.93 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004812 601 VALNQMGLACVQRYSI------NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 601 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
..|..........|+. ++-++.|++|+..............+..+...|.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 4555555566666777 77788888888764322222344556677777755 5679999999999999986
Q ss_pred HcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 675 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 675 ~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
|...+.++...|..-.++|+...|. +.+.+++.+.|.
T Consensus 90 -----hKkFAKiwi~~AqFEiRqgnl~kAR-kILg~AiG~~~k 126 (161)
T 4h7y_A 90 -----CKKFAFVHISFAQFELSQGNVKKSK-QLLQKAVERGAV 126 (161)
T ss_dssp -----CTTBHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCB
T ss_pred -----hHHHHHHHHHHHHHHHHcccHHHHH-HHHHHHhccCCC
Confidence 4455889999999999999999999 999999999885
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.45 E-value=0.038 Score=45.51 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINE---AVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
..+.+++|+++....+... ++.+++..+.. ..| ...++++.||..+.+.|+|++|+.+++.++++
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~---- 103 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---- 103 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----
Confidence 4688889999998877655 66666665543 236 56779999999999999999999999999988
Q ss_pred cCCCChhHHHHHH
Q 004812 676 LGTANPDVDDEKR 688 (729)
Q Consensus 676 ~~~~~p~~~~~~~ 688 (729)
.|++..+..
T Consensus 104 ----eP~n~QA~~ 112 (126)
T 1nzn_A 104 ----EPQNNQAKE 112 (126)
T ss_dssp ----CTTCHHHHH
T ss_pred ----CCCCHHHHH
Confidence 566655543
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.89 E-value=1.4 Score=42.87 Aligned_cols=131 Identities=9% Similarity=-0.081 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (729)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (729)
|+|=+|.+.|+-........+.......+++.-+..+...|++..|.+...-.++.+.+... +........+..++.
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARLVRLIA 103 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHH
Confidence 44444444444333222222223333334444555666667777777766666666665542 222334444555544
Q ss_pred HcCCHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004812 486 RTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (729)
Q Consensus 486 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (729)
....-+ .=..+.++++....+.. .........+..+|..|...|++.+|..+|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g--~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFS--EYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTS--SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432211 22456666666655431 1122234557777777777777777666653
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.066 Score=55.77 Aligned_cols=110 Identities=14% Similarity=0.017 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
.....++..+|..|...|+++.|.+.|.++........ .....+..+..++...+++..+..++.++.......+
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 34556888999999999999999999999888765443 2356788888899999999999999999988877777
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (729)
+...........|.++...++|..|..+|..++..
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 76666677777888899999999999999887654
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.73 E-value=3.3 Score=45.82 Aligned_cols=121 Identities=7% Similarity=-0.083 Sum_probs=81.5
Q ss_pred hcC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHH----hCC-CC-----
Q 004812 363 ALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE---TKGDHEAALEHLVLASMTMI----AND-QD----- 428 (729)
Q Consensus 363 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~----~~~-~~----- 428 (729)
.++ ++.|+.++++.....+... .+...+.+.. ...+--+|+..+.+++.... ... .+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~---------~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD---------IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh---------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444 5778888888776554331 1222222221 12334456766666653221 111 11
Q ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 429 --AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (729)
Q Consensus 429 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (729)
+.....+...+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 222345666788888999999999999999998 7888999999999999999999999877654
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.56 E-value=0.25 Score=56.39 Aligned_cols=46 Identities=24% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004812 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (729)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (729)
....|++++|.+..+. ......|..+|..+...++++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666666665321 223456777888888888888888887765
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.52 E-value=0.085 Score=43.56 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004812 641 TLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (729)
Q Consensus 641 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (729)
...+.+++|+++.+..+. .+++.+++..+.. +| ...+.++.||..+.+.|+|++|. .+.+.+|+..|
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP 109 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHER 109 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCC
Confidence 346889999999988765 4567777666542 35 57899999999999999999999 99999999999
Q ss_pred c
Q 004812 717 R 717 (729)
Q Consensus 717 ~ 717 (729)
+
T Consensus 110 ~ 110 (134)
T 3o48_A 110 N 110 (134)
T ss_dssp T
T ss_pred C
Confidence 7
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.041 Score=57.33 Aligned_cols=110 Identities=9% Similarity=0.135 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (729)
.....++..+|..|...|++++|.+.|.++...... .......+..+..++...+++..+..++.++..+....
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 334567889999999999999999999999887543 23457788889999999999999999999998887665
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (729)
+++..........|.++...++|..|..+|-.+...
T Consensus 202 -~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 -GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 555555566677788889999999999999877653
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.38 E-value=0.28 Score=50.27 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCCCCChHHHHH
Q 004812 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGERKSAFFGVA 602 (729)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~ 602 (729)
|......|+.+.|...+.+|+.++...+-.. +. ...|-.+ ...+++. ...+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~------------~~--~~~w~~~~r~~l~~~--------------~~~a 173 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LR--DFQFVEPFATALVED--------------KVLA 173 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GT--TSTTHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC------------CC--chhHHHHHHHHHHHH--------------HHHH
Confidence 3334456888999999999998874331100 00 0111111 1111111 2245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004812 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (729)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 679 (729)
+..++..+...|++.+|+..+..++.. +|....++..|..+|...|+..+|+..|+++...+.+-+|-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 566788899999999999999999998 899989999999999999999999999999999888777743
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.30 E-value=0.071 Score=61.02 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcH
Q 004812 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557 (729)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 557 (729)
..++..+...|.+++|+...+. ... ...+....|++++|.+..+.. ..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~~-------~f~~~l~~~~~~~A~~~~~~~--------~~---- 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------QDQ-------KFELALKVGQLTLARDLLTDE--------SA---- 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------HHH-------HHHHHHHHTCHHHHHHHHTTC--------CC----
T ss_pred HHHHHHHHhCCChHHheecCCC-------------cch-------heehhhhcCCHHHHHHHHHhh--------Cc----
Confidence 5556666677777666544321 111 123345678888887765321 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004812 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (729)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (729)
...|..+|..+...|+++.|+.+|.++-
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3578899999999999999999998763
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.29 E-value=0.24 Score=41.50 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 640 DTLGVYSNLAGTYDAIGRLD---DAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
-...+.+++|+++....+.. +++.+++..+.. +| ...+.++.||..+.+.|+|.+|. .+.+.+|+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcC
Confidence 45568899999999887654 566666665542 34 57889999999999999999999 9999999999
Q ss_pred cc
Q 004812 716 SR 717 (729)
Q Consensus 716 p~ 717 (729)
|+
T Consensus 108 P~ 109 (144)
T 1y8m_A 108 RN 109 (144)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.16 E-value=0.33 Score=40.09 Aligned_cols=75 Identities=5% Similarity=-0.071 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004812 599 FGVALNQMGLACVQRYS---INEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (729)
...+.+++|+++.+..+ ..+++.+++..+.. +| ...+.++.||..+.++|+|++|+.+.+.++++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--- 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence 35678888988888765 45688888877765 56 46779999999999999999999999999976
Q ss_pred HcCCCChhHHHHHHH
Q 004812 675 KLGTANPDVDDEKRR 689 (729)
Q Consensus 675 ~~~~~~p~~~~~~~~ 689 (729)
.|++..+...
T Consensus 108 -----eP~N~QA~~L 117 (134)
T 3o48_A 108 -----ERNNKQVGAL 117 (134)
T ss_dssp -----CTTCHHHHHH
T ss_pred -----CCCCHHHHHH
Confidence 5766555543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.32 Score=53.77 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=83.9
Q ss_pred cch-HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHHHHHh----CCCCC-----
Q 004812 530 MNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY--M-LGNYSDSYDSFKNAISKLRAI----GERKS----- 596 (729)
Q Consensus 530 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~~~~~----~~~~~----- 596 (729)
.++ ++.|+.++++.....+.. .++...+.+.. . ..+--+|+..+.++++-.... .....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 455 577888888876654433 22222222222 1 123456777777776533211 11110
Q ss_pred -hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004812 597 -AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (729)
Q Consensus 597 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (729)
+.....+..-+..+...|+++-|+.+.++|+.. .|....+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112335666688888999999999999999999 8999999999999999999999999888766
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.23 Score=51.68 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=66.3
Q ss_pred HHHHhCCHHHHHHHHHHHH--HHHH---hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-cC
Q 004812 401 ICETKGDHEAALEHLVLAS--MTMI---ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY-------QKALTAFKTN-KG 467 (729)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~ 467 (729)
.+...+++++|..+....+ .... ....+...+.+|+..+.++...|+........ ...+..++.. ..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456677888877765443 1221 11224556777888888888888776543221 1222222222 22
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
.|....+..++.+-+.|...+.+++|..+..++. +... .......+..++.+|.++..+++|.+|.+++..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2455677888899999999999999999998874 2111 12355668888999999999999999999999999876
Q ss_pred HhC
Q 004812 548 NDA 550 (729)
Q Consensus 548 ~~~ 550 (729)
+..
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 544
No 245
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.18 Score=52.45 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=64.7
Q ss_pred HHHHhcCHHHHHHHHHHHH--HHHHh-cCCCCCHHHHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHHHHhC
Q 004812 359 AHVQALQFSEAQKFCQMAL--DIHKD-NGSPASLEEAADRRLMGLICETKGDHEAAL----------EHLVLASMTMIAN 425 (729)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~----------~~~~~al~~~~~~ 425 (729)
.++..+++++|..+....+ ..... +...-+...+.+|+..+.++...|+..... ..+-.+++.....
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888888876655 22111 111122335677888888888888766532 2333333333334
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
.+....+.+++.+-+.|...+.+++|..+..++.-- .. ...+...+..++.+|.++...++|.+|..++..|+..+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 456677888999999999999999999998877411 00 001345577788899999999999999999999987643
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.58 E-value=1.4 Score=50.02 Aligned_cols=105 Identities=10% Similarity=-0.080 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004812 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (729)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (729)
.....|+.+-..|++.|+.++|..+|.+..+....-... ...+|+.|...|.+.|+.++|.++|++..+. |
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G 195 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----TLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Confidence 344568889999999999999999998876543321111 2468999999999999999999999998764 2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004812 636 PYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI 671 (729)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 671 (729)
- .|+. .+|..|..++.+.|+. ++|.++|++....
T Consensus 196 ~-~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 L-TPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp C-CCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred C-CCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2 4554 4888888899999985 7888999988764
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.47 E-value=0.47 Score=39.75 Aligned_cols=65 Identities=6% Similarity=-0.031 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004812 599 FGVALNQMGLACVQRYSI---NEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (729)
...+.+++|+++....+. .+++.+++..+.. +| ...+.++.||..+.++|+|++|..+.+.++++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356788889999887754 5677788777764 45 56679999999999999999999999999987
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.07 E-value=4.9 Score=39.38 Aligned_cols=210 Identities=17% Similarity=0.106 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCCCCC
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGV 511 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~ 511 (729)
.+++.-+..+.+.|++.-|.+...-.++.+.+..-+ ........+..++.....-+ .=..+..+++....+. +.
T Consensus 56 dLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~---~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~ 130 (336)
T 3lpz_A 56 DILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR---VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GD 130 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SS
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CC
Confidence 344445566667777777777776667766665422 22244455555555544321 2245667777765542 11
Q ss_pred ChHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----------H-HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004812 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQK-----------A-LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (729)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------a-l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (729)
........+..+|..|...+++.+|..+|-. . .+..... + +.............|+..++...|..
T Consensus 131 ~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~-~-~~e~dlfiaRaVL~yL~l~n~~~A~~ 208 (336)
T 3lpz_A 131 YPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD-E-SHTAPLYCARAVLPYLLVANVRAANT 208 (336)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS-C-GGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2223345677899999999999999877621 1 1111111 1 22333333444556788999999999
Q ss_pred HHHHHHHHHHHhCCC-----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hH
Q 004812 580 SFKNAISKLRAIGER-----------------KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DT 641 (729)
Q Consensus 580 ~~~~al~~~~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~ 641 (729)
.+....+........ ..+.. -+..+..+-++.+.. ..|....+.+...... +| ..
T Consensus 209 ~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NFl~lLllt~q~~~~----~lF~~L~~~Y~~~l~r-d~~~~ 281 (336)
T 3lpz_A 209 AYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NFISMLLLSVQKGSP----DLFRQLKSKYEANLNE-LNGIW 281 (336)
T ss_dssp HHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--HHHHHHHHHHHSCCH----HHHHHHHHHTHHHHHT-TTTTT
T ss_pred HHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--HHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHh-cHHHH
Confidence 888777765332111 11211 122233344455543 4455555544444333 34 66
Q ss_pred HHHHHHHHHHHHHcC
Q 004812 642 LGVYSNLAGTYDAIG 656 (729)
Q Consensus 642 ~~~~~~la~~~~~~g 656 (729)
...+..+|..|+...
T Consensus 282 ~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 282 DTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 778888899888664
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.98 E-value=4.9 Score=39.09 Aligned_cols=174 Identities=8% Similarity=-0.010 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004812 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (729)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (729)
+....+..++.=|.+++++++|++++... +..+.+.|++..|.++..-.++.+.+....
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~ 89 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQG---------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVK 89 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 33445556666666777777777665544 344445556655555555555555544332
Q ss_pred CChHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH------
Q 004812 595 KSAFFGVALNQMGLACVQRYSIN-EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF------ 667 (729)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 667 (729)
.. ......+..++.....-+ .=..+..+++....+..+. .......+..+|..|...|++.+|..+|-.
T Consensus 90 ~~---~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~ 165 (312)
T 2wpv_A 90 VD---DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSM 165 (312)
T ss_dssp CS---HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHH
T ss_pred CC---HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccH
Confidence 21 123334444443322111 1256677777776665332 223445889999999999999999997742
Q ss_pred --HHHHHHHHcCC---CChhHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHhh
Q 004812 668 --VVGIREEKLGT---ANPDVDDEKRRLA-ELLKEAGRVRSRKAQSLETLLDA 714 (729)
Q Consensus 668 --al~~~~~~~~~---~~p~~~~~~~~La-~~~~~~g~~~~A~~~~l~~al~~ 714 (729)
...+.-+.... ..|...+.+...+ ..|...|+...|. ..+....+.
T Consensus 166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~-~~~~~f~~~ 217 (312)
T 2wpv_A 166 IKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAH-ESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence 12221111112 4555555554444 3467889999998 887766543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.88 E-value=1.2 Score=45.59 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=80.3
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhccccc---h----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH---A----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 338 (729)
|......|+.+.|...+.+|+.+....+-++. + .....+...++..+...|++.+|+..+..++..
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~- 200 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE- 200 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 44445568999999999999998642211111 1 122344567788889999999999999999888
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004812 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (729)
+|..-.++..+..++...|+..+|+..|+++......
T Consensus 201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999886544
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.81 E-value=2.2 Score=37.44 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=65.9
Q ss_pred HHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004812 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354 (729)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 354 (729)
....|+++.|.++.+..-. -..|..||......|+++-|..+|+++-.. .
T Consensus 15 AL~lg~l~~A~e~a~~l~~--------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~ 64 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLND--------------SITWERLIQEALAQGNASLAEMIYQTQHSF----------------D 64 (177)
T ss_dssp HHHTTCHHHHHHHHHHHCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------H
T ss_pred HHhcCCHHHHHHHHHHhCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------H
Confidence 4667999999988765411 124889999999999999999998875433 1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004812 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418 (729)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 418 (729)
.+..+|...|+.+.-..+. ++....++ ++....+++..|+++++++.|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla----~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQ----NIAQTRED---------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHH----HHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHH----HHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 2334455667765444333 33322221 455566777888988888887643
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.63 E-value=5.8 Score=38.83 Aligned_cols=232 Identities=10% Similarity=0.032 Sum_probs=119.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004812 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (729)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (729)
++.=|...++|++|++.+......+-+.. ....-......+..+|...+-.-. .....+.++++...- ...+
T Consensus 41 i~~Ry~~~k~y~eAidLL~~GA~~ll~~~--Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~--~~~p--- 112 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASVSQTLLRSG--QGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQ--PGEP--- 112 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSC--TTCH---
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC--CCCc---
Confidence 44456778888888887665554443321 011112222233344444332110 134444444444321 1111
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHHH
Q 004812 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK--------NAISKLR 589 (729)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~~ 589 (729)
.=..+..+++.......+.......+...+|..|.+.+++.+|..+|- ...+++-
T Consensus 113 -----------------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 113 -----------------VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp -----------------HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence 113355566665554322233345677889999999999999988872 1112211
Q ss_pred Hh-CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--------C------ChhHHH-HHHHHHHHHH
Q 004812 590 AI-GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--------Y------HPDTLG-VYSNLAGTYD 653 (729)
Q Consensus 590 ~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~------~~~~~~-~~~~la~~~~ 653 (729)
+. ....+.............|+..++...|...+....+.+...... . .|.... -+..+..+-.
T Consensus 176 ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~ 255 (336)
T 3lpz_A 176 EWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSV 255 (336)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHH
Confidence 11 111122223334444456778899999999888877765432110 0 111111 1122222334
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004812 654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (729)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 698 (729)
+.+. ...|+...+.+...+..+.|.....+..+|.+|+...
T Consensus 256 q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 256 QKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred hcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 4454 3566666666666555553377888899999998653
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.63 E-value=0.74 Score=52.15 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 678 (729)
...+|+.+-..|++.|+.++|..+|.+.......-. .|+. .+|..|...|.+.|++++|.++|++..+. .
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pdv-vTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G 195 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLTL-DMYNAVMLGWARQGAFKELVYVLFMVKDA------G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence 456789999999999999999999988765432221 3444 48999999999999999999999988753 2
Q ss_pred CChhHHHHHHHHHHHHHHhCCH-hHHHHHHHHHHHhh
Q 004812 679 ANPDVDDEKRRLAELLKEAGRV-RSRKAQSLETLLDA 714 (729)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~~l~~al~~ 714 (729)
-.|+ ..+|..|...+.+.|+. ++|. ..|++..+.
T Consensus 196 ~~PD-vvTYntLI~glcK~G~~~e~A~-~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTPD-LLSYAAALQCMGRQDQDAGTIE-RCLEQMSQE 230 (1134)
T ss_dssp CCCC-HHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHc
Confidence 3454 56788888899999985 6787 888887654
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.89 E-value=15 Score=41.49 Aligned_cols=188 Identities=12% Similarity=0.140 Sum_probs=97.8
Q ss_pred HHHHHhcCCC---CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHcCC
Q 004812 500 ALRIYEKPVP---GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 500 al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~ 573 (729)
++....+.++ ........-+++.+|.++...++ +++.++...+.......+. ......+...||.++.-.++
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ 470 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence 3444444443 23444567778888888877664 6777777766543211111 11222344577777776665
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004812 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (729)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (729)
+++...+...+. +........+-..+|.++...|+-+....++..+.+. ..+...-...+|..+.
T Consensus 471 -eev~e~L~~~L~------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll 535 (963)
T 4ady_A 471 -IEVYEALKEVLY------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALI 535 (963)
T ss_dssp -HHHHHHHHHHHH------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhh
Confidence 345555544443 1111111245567888888888876666555555431 2222222334444455
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004812 654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLL 712 (729)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al 712 (729)
..|+.+.+..+.+.... ..+|.... +...+|..|...|+...-. ..+..+.
T Consensus 536 ~~g~~e~~~~li~~L~~-------~~dp~vRygaa~alglAyaGTGn~~aIq-~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-------SDESLLRYGGAFTIALAYAGTGNNSAVK-RLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-------CSCHHHHHHHHHHHHHHTTTSCCHHHHH-HHHHHHH
T ss_pred hCCChHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHhc
Confidence 66777666655554432 22343322 2345666666777743322 3444443
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.21 E-value=5.7 Score=46.99 Aligned_cols=181 Identities=9% Similarity=0.013 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH----------------HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIY----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (729)
.+.+|.++...|++++|..+|+++-.-. .........+...|..+..++.+.+.++.++.+.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4779999999999999999998763211 111111223345677888899999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004812 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663 (729)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 663 (729)
|++.. ....+......|.++-..+...|+|++|...+...-. ......++..|...++..|..+.=+.
T Consensus 925 Ai~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 925 ADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhhC
Confidence 98752 2222222334678888889999999999877644321 11223344555555555554333222
Q ss_pred H-----H---HHHHHHH-HHH-cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004812 664 I-----L---EFVVGIR-EEK-LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (729)
Q Consensus 664 ~-----~---~~al~~~-~~~-~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (729)
+ + +..+.-. +.. .-...|.+-. .|=-.+...|++.+|....|+.+.++.
T Consensus 993 lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~---iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 993 YSMPTLRQDVDNLLERKAFQMINVESQPCWYN---ILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhCCccccCCCHHH---HhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 1 1 1111111 111 0122343322 233345667888888867888877653
No 256
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.92 E-value=2.2 Score=37.44 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=65.9
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004812 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (729)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (729)
....|+++.|.+..+.. .. ...|..+|......|+++-|..+|.++- -+..+.
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------------D~~~L~ 67 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------ND------SITWERLIQEALAQGNASLAEMIYQTQH--------------SFDKLS 67 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHTT--------------CHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CC------HHHHHHHHHHHHHcCChHHHHHHHHHhC--------------CHHHHH
Confidence 35679999998887653 11 2469999999999999999999998762 123344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004812 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (729)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (729)
.+|...|+.+.-....+.+... + . +.....+++.+|+++++++.|.+.
T Consensus 68 ~Ly~~tg~~e~L~kla~iA~~~----g---~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 68 FLYLVTGDVNKLSKMQNIAQTR----E---D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----T---C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHC----c---c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5666777775544333322221 1 1 122345567789998888887654
No 257
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.51 E-value=7.7 Score=33.29 Aligned_cols=176 Identities=13% Similarity=-0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH
Q 004812 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK----------LR 589 (729)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~ 589 (729)
-..++.++.-.|.+..|+-.+.. . ..+...+.-+.||.+..+|..|+..++..++- --
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 34466777788888877665532 1 11344556788999999999999999988831 00
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-----------HHHcCCh
Q 004812 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-----------YDAIGRL 658 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-----------~~~~g~~ 658 (729)
+..-.++......+..+|.++.+.|+.++|+.+|.....+ .+-...+- +|..- -...|+.
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--------~~lf~~vE-nliyeN~vp~~~d~~~i~~~~~~ 174 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--------SFLFSPVE-NLLLENKVPQKRDKENVRQTGRR 174 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHH-HHHHTTCCCCCC-----------
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--------ccccchHH-HHHhhcCCCcccchHHHHhhhhc
Confidence 1111112223457788999999999999999999988776 33222111 11000 0111111
Q ss_pred HHHHHHHHHHHHHHHHH-------cCCCChhHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 659 DDAIEILEFVVGIREEK-------LGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 659 ~~A~~~~~~al~~~~~~-------~~~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
.--.+++.....+.+.+ ....-|.... .....+..|+..|-.++.. ..|..+...+|.
T Consensus 175 ~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~ 240 (242)
T 3kae_A 175 GIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPM 240 (242)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred cchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCC
Confidence 11122232222222210 1122233322 2235678899999999999 999999999985
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.62 E-value=1.2 Score=46.70 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
..++..||.+......+..|..+|.+|..+ .|.....+..||.+....|+.-+|+-+|-+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 357888999999999999999999999999 999999999999999999999999999998864
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.49 E-value=8 Score=45.73 Aligned_cols=136 Identities=9% Similarity=-0.071 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------Hhc-CCCCCHhHHHHHHHHHHHHHHcCChHH
Q 004812 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFE-------------IGA-NGKPSLELVMCLHVIAAIYCSLGQYNE 283 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~-------------~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~ 283 (729)
|..+..-+.+|++++..|+ +++|..+|++|..-+. ... ...........|..+..++...+.++.
T Consensus 839 ~~~~~~~yl~g~~~L~~ge-~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred cCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 3344456889999999998 9999999988642110 000 000011123457778888899999999
Q ss_pred HHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh
Q 004812 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363 (729)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 363 (729)
++++...|++.. .++++......|.++=..+...|+|++|...+...-. ......++..|-...+..
T Consensus 918 vi~fa~lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 918 ALEFSLLADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQ 984 (1139)
T ss_dssp HHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhC
Confidence 999999998764 2233333344577888889999999999776643211 122345555565555555
Q ss_pred cCHH
Q 004812 364 LQFS 367 (729)
Q Consensus 364 g~~~ 367 (729)
++.+
T Consensus 985 ~~~~ 988 (1139)
T 4fhn_B 985 GKIN 988 (1139)
T ss_dssp CCHH
T ss_pred CChh
Confidence 5544
No 260
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.38 E-value=18 Score=36.59 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----C-------CCChhHHHHHHHH
Q 004812 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA----N-------DQDAEVASVDCSI 438 (729)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~-------~~~~~~~~~~~~l 438 (729)
+++|+..+.-......+ ... ...+..+.....+.++|++++......... . ........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~l---v~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LSV---VKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HHH---HHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHH---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 44555555555544432 111 112334556677899999998765322111 0 1123345667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+...+-..+..+.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988887766555556677777788888999999988887777777654
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.60 E-value=39 Score=38.30 Aligned_cols=173 Identities=9% Similarity=0.010 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP--ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
...+++.+|.++...+ .++..++...+......... .......+...||.++.-.++- ++.+.+...+. .
T Consensus 412 k~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~---d-- 483 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLY---N-- 483 (963)
T ss_dssp HHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHH---T--
T ss_pred HHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHh---c--
Confidence 4556777777765544 46777777766543210000 0122223455777777766653 45555544432 1
Q ss_pred CChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004812 427 QDAE-VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (729)
Q Consensus 427 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (729)
+... ...+-..+|.++.-.|+-+.....+..+.+. ......-...+|..+...|+.+.+....+.....
T Consensus 484 d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-- 553 (963)
T 4ady_A 484 DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKMLAS-- 553 (963)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--
Confidence 1211 1245567888888888876555555444431 1222233344455555677777666555544332
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004812 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (729)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (729)
.++.....+...+|..|...|+...-..++..+.
T Consensus 554 -----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 554 -----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp -----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 2233334455678888889999654444555444
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.55 E-value=1.5 Score=46.17 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
.++..||.+......+..|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46778999999999999999999999999 8999999999999999999999999999998865
No 263
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.84 E-value=28 Score=35.17 Aligned_cols=110 Identities=8% Similarity=-0.049 Sum_probs=76.0
Q ss_pred HHHHHHcCChHHHHHHHHHhcccchhhcc--------ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004812 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEG--------QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
..+.....+.++|++++++.......... ..+....+.+...++..|...|+.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 44556678899999999877554321111 1111234556788999999999999999999999887766433
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004812 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (729)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (729)
.+.......+...+..|...++|..+...+-..+....
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 33234555666677788888999888777777666554
No 264
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=86.32 E-value=22 Score=33.30 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIY--EKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAP 551 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~ 551 (729)
.-+..+|.+..+.++|++...+++++.+.. ... . ..-.+.|..+|-. .|....+...+....+... ..
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL-----t---~EERnLLSvaYKNvig~rR~swRiissieqke~-~k 79 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL-----T---VEERNLLSVAYKNVIGARRASWRIISSIEQKEE-SR 79 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC-----C---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-cc
Confidence 445678889999999999999999988863 111 1 1122333333322 2333444444433222211 11
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHHHHHc-----C-----CHHH
Q 004812 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKSAFFGVALNQMGLACVQR-----Y-----SINE 618 (729)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~ 618 (729)
+... ...+..-|... =-.+-..+....+.+..... ...+......+-..|..|.-. | -.+.
T Consensus 80 ~~~~-----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 153 (260)
T 1o9d_A 80 GNEE-----HVNSIREYRSK-IENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES 153 (260)
T ss_dssp TCHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CcHH-----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 1111 01111111111 11222333444555443321 111111222233345444422 2 2357
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004812 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 672 (729)
|...|+.|.++......|.||-......+.+.+|.. +++.++|..+.++++.-.
T Consensus 154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 889999999999888888999988888888877765 799999999988887544
No 265
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=86.13 E-value=11 Score=36.50 Aligned_cols=74 Identities=19% Similarity=0.130 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004812 432 ASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 432 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
..++.+||.+-...- ....++..|.+++...+..++..| ..-|..+|..+++.+++.+|+..+-++-...+...
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 330 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYN 330 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 344555555443321 122388999999999988885433 45677889999999999999999999988877643
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.44 E-value=6.8 Score=36.84 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=75.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---------------
Q 004812 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE--------------- 673 (729)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------- 673 (729)
..++.|+.++|+......++. +|........|.++++-.|+++.|...++.+.++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 356778999999999999988 899999999999999999999999998887655421
Q ss_pred -----HHc-C------CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 674 -----EKL-G------TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 674 -----~~~-~------~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
+++ | ...|........-+......|+.++|. ..-.++++.-|.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCcc
Confidence 111 1 112222333444455666789999999 999999888765
No 267
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=84.78 E-value=23 Score=32.24 Aligned_cols=177 Identities=10% Similarity=0.024 Sum_probs=101.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCC
Q 004812 479 RLADMYNRTGKLRESKSYCENALR----IYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
.+|.+..+.++|++...+.+++.. .-... . ..-.+.|..+|-. .|....+...+....+ ...+.
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eL-----t---~EERnLLSvAYKNvig~rR~swRiissiEq---kek~~ 79 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEF-----D---DEERHLLTLCIKHKISDYRTMTSQVLQEQT---KQLNN 79 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCSC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCC-----C---HHHHHHHHHHHHHhhcccHHHHHHHHHHHH---HHcCC
Confidence 678889999999999999999988 42211 1 1223333444322 2333333333322211 11121
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 004812 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-----QRYSINEAVELFEEARS 628 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~ 628 (729)
.. ...+..-|... =-.+-.......+.+.....-+........+-..|..|. ..|+.+.|...|+.|.+
T Consensus 80 ~~-----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~ 153 (227)
T 2o8p_A 80 DE-----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT 153 (227)
T ss_dssp HH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence 11 11112222111 112223344555555554332221112223334455443 35678999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 004812 629 ILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIR 672 (729)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 672 (729)
+......|.||-......+.+.+|. -+++.++|..+.++|+.+.
T Consensus 154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9988788889988887777777665 5889999999999998764
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.16 E-value=10 Score=33.81 Aligned_cols=87 Identities=6% Similarity=-0.032 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 004812 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 574 (729)
.++++++..+.....-.+++....+|...+..+ ..+...++...|.-.... +.....+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 578888887766443455777788888887765 233355777777655543 33344577888999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004812 575 SDSYDSFKNAISK 587 (729)
Q Consensus 575 ~~A~~~~~~al~~ 587 (729)
.+|...|+.+++.
T Consensus 132 ~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 132 LEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
No 269
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=84.11 E-value=28 Score=32.59 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhCCC
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQ 427 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~ 427 (729)
.-+..+|.+..+.++|++...+.+++.... +... . .-.+.|..+|-. .|....+...+....+.....+.
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt----~---EERnLLSvaYKNvig~rR~swRiissieqke~~k~~ 81 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN 81 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCC----H---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence 455678888889999999999999988754 2211 1 223444444322 12223333333221111110111
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHHHcCC----------HHHHH
Q 004812 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTGK----------LRESK 494 (729)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g~----------~~~A~ 494 (729)
.. ...+..-|.. .=-.+-..++...+.+.....-+ ..+ ..+..+-..|..|...-. .+.|.
T Consensus 82 ~~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 82 EE-----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp HH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 11 1111111111 11122334455555554443211 112 222233344665553322 35788
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH
Q 004812 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKI 546 (729)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 546 (729)
..|+.|..+....++.. +|.......+.+..|+ -+++.++|..+.++++.-
T Consensus 156 ~aY~~A~~iA~~~L~pt-hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTELAPT-HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999987544344 4444444455555554 579999998887777654
No 270
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=83.63 E-value=15 Score=36.29 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004812 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (729)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (729)
++..|.+++...+..+...| ..-|..+|..+++.+++.+|+..+-.+-...+......++.++
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEI 360 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEI 360 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHH
T ss_pred HHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHH
Confidence 78899999999888875333 4567888999999999999999999999887765433334333
No 271
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=83.04 E-value=6.5 Score=29.73 Aligned_cols=48 Identities=21% Similarity=0.054 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004812 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
+..+...|...-..|+ |++|+.+|..|++.+-......+++..-..+.
T Consensus 16 A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr 63 (86)
T 4a5x_A 16 AATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRCNLR 63 (86)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4567788888888886 99999999999999887766556655444333
No 272
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=82.85 E-value=28 Score=31.71 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004812 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAEVAS 433 (729)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (729)
.+|.+..+.++|++...+.+++..........-.. .-.+.+..+|-. .|....+...+.... ........
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~---EERnLLSvAYKNvig~rR~swRiissiE---qkek~~~~--- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNNDE--- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCHH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCH---HHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCCHH---
Confidence 67888889999999999999988731111111111 223444444422 122222222222111 11101111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHhcCC
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIYEKPV 508 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~ 508 (729)
...+..-|... =-.+-...+...+.+.....-+........+-..|..|. ..|+.+.|...|+.|.++....+
T Consensus 82 -~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L 159 (227)
T 2o8p_A 82 -LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP 159 (227)
T ss_dssp -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence 11111212111 112234456666666665543332222333334455554 35678899999999999987654
Q ss_pred CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004812 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (729)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (729)
+..++-....+++.-...|.-+++.++|..+.++|+.+.
T Consensus 160 ~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 160 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 333333334344433444556899999999999998764
No 273
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.19 E-value=24 Score=30.40 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHH
Q 004812 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA----------FKT 464 (729)
Q Consensus 395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~ 464 (729)
...++..++..|.|..++-++.. ...+.+.+.-+.||....+|..|+..++..+.- .-+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 45678888999999999887742 223445566788999999999999999988831 111
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (729)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (729)
..--+..+.-..+..+|.++.+.|+.++|+.++......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111122334556788999999999999999999887654
No 274
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=82.18 E-value=32 Score=32.01 Aligned_cols=183 Identities=12% Similarity=0.052 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
.-+..+|.+..+.++|++...+.+++.+..... ...=.+.|..+|-. .|....+...+....+... ..|.
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL--------t~EERNLLSvAYKNvIgarR~swRiissieqkee-~~g~ 102 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-NKGG 102 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhh-cccc
Confidence 345667888899999999999999887652221 11223334444422 2333334443332222211 1121
Q ss_pred CCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHh--C-CCCChHHHHHHHHHHHHHHHc-----C-----CHHHH
Q 004812 554 QSTVAGIEAQMGVMYYMLGNY-SDSYDSFKNAISKLRAI--G-ERKSAFFGVALNQMGLACVQR-----Y-----SINEA 619 (729)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A 619 (729)
... ..+..-|. .+. .+-.......+.++... . ...+......+-..|..|.-. | -.+.|
T Consensus 103 ~~~-----~~~i~~yr--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a 175 (261)
T 3ubw_A 103 EDK-----LKMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENS 175 (261)
T ss_dssp HHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHH
Confidence 110 11111111 111 11223334444444332 0 011111122233345554322 1 24678
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 673 (729)
...|++|.++......|.||-......+.+.+|.. +++.++|..+.++|+.-.-
T Consensus 176 ~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 176 LVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 89999999999888888999988888888877765 7999999999998876543
No 275
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=81.13 E-value=23 Score=35.24 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004812 432 ASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (729)
Q Consensus 432 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (729)
..++.+||.+-...- ....++..|.+|+...+..+...+ ..-|..+|-.+.+.+++.+|+..+-++-........
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY 338 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY 338 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccc
Confidence 344445555443221 122467899999999998885433 567888899999999999999999999988776544
Q ss_pred CCChH
Q 004812 510 GVPPE 514 (729)
Q Consensus 510 ~~~~~ 514 (729)
..++.
T Consensus 339 ~reDe 343 (489)
T 4gq4_A 339 CREDE 343 (489)
T ss_dssp CTTCH
T ss_pred ccchH
Confidence 43333
No 276
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=80.87 E-value=35 Score=31.57 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ 554 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 554 (729)
-+..+|.+..+.++|++...+.+++...-... ...-.+.|..+|-. .|....+...+....+... ..+..
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissieqke~-~~~~~ 76 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPL--------SNEERNLLSVAYKNVVGARRSSWRVISSIEQKTS-ADGNE 76 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhh-ccCCH
Confidence 34567888899999999999999887752221 12223334444432 2333444444433222211 11222
Q ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCC--hHHHHHHHHHHHHHHHc-----C-----CHHHH
Q 004812 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKS--AFFGVALNQMGLACVQR-----Y-----SINEA 619 (729)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~--~~~~~~~~~la~~~~~~-----g-----~~~~A 619 (729)
..... ..-|... =-.+-.......+.+..... ...+ ......+-..|..|.-. | -.+.|
T Consensus 77 ~~~~~-----i~~yr~k-ie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a 150 (248)
T 3uzd_A 77 KKIEM-----VRAYREK-IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS 150 (248)
T ss_dssp C-HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHH-HHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 11111 1111100 01122233344444433320 1112 12223333445555422 1 24678
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004812 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 674 (729)
...|+.|.++......|.||-......+.+.+|.. +++.++|..+.++|+.-.-.
T Consensus 151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999888888999988888888877665 79999999999988765433
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.81 E-value=3.6 Score=38.66 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=53.0
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 651 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
-+.+.|..++|+......++- +|.+......|..+++-.|+++.|. +.++.+.+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~-~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERAD-EQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCch
Confidence 356789999999999988864 7999999999999999999999999 999999999998
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=79.42 E-value=16 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS 261 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~ 261 (729)
.+..+-.+|..+...|. |++||++.++|...+.........
T Consensus 14 ~AH~~~RrAe~ll~~gk-ydeAIech~kAa~yL~eAmkltqs 54 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTES 54 (97)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhHhhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46677889999999997 999999999999888776554444
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.04 E-value=75 Score=34.27 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004812 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (729)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (729)
++.......+.+.|...+...... ..............++.-....+...++...+.++... ..+...
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-- 287 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSL-- 287 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHH--
Confidence 344444555888888888765432 11122223334444554445555355666677664332 112222
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
.-. ++......|+++.|..+|...-. .........+.+|+++...|+.++|. ..|+.+..
T Consensus 288 ~e~-~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~-~~~~~~a~ 347 (618)
T 1qsa_A 288 IER-RVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ 347 (618)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Confidence 222 33334466999999998865432 22345777899999999999999999 99988865
No 280
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.22 E-value=12 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.067 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
.+..+...|...-..|+ |++|+.+|..|++.+.......+++..-..+.
T Consensus 14 ~Ai~lv~~Ave~D~~g~-y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~ 62 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVLR 62 (93)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45567888888888886 99999999999999887765555555444343
No 281
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=76.23 E-value=7.1 Score=29.27 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~ 257 (729)
.+..+...|...-..|+ |++|+.+|.+|++.+.....
T Consensus 18 ~Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 18 MARKYAINAVKADKEGN-AEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888886 99999999999998876543
No 282
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=75.91 E-value=52 Score=30.74 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhCC
Q 004812 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH---KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~ 426 (729)
.-+..+|.+..+.++|++...+.+++.+.. +... . .-.+.+..+|-. .|....+...+....+.....+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt----~---EERnLLSvAyKNvIg~rR~swRiissieqke~~k~ 101 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELT----V---EERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRN 101 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCC----H---HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccC
Confidence 445567888889999999999999988753 2211 1 224444444432 1222223333221111101011
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHcC----------CHHHH
Q 004812 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHPA-VASVFVRLADMYNRTG----------KLRES 493 (729)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~~~~~la~~~~~~g----------~~~~A 493 (729)
. ... ..+..-|. ..=-.+-...+...+.+.....-+ ..+. ....+-..|..|...- -.+.|
T Consensus 102 ~-~~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 102 A-EDA----SKMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp C-HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred c-HHH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 1 111 11111111 111122234445555554443211 1122 2222333455554332 23578
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHh
Q 004812 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYND 549 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 549 (729)
...|++|.++. ..++. .+|.......+.+..|+ -+++.++|..+.++|+.-.-.
T Consensus 176 ~~aY~~A~~iA-~~L~p-thPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 176 LKAYKDATVVA-KDLEP-THPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHH-TTSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88999999999 65544 44444444555555554 489999999988888775543
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=75.81 E-value=7.8 Score=29.06 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~ 257 (729)
.+..+...|...-..|+ |++|+.+|.+|++.+.....
T Consensus 10 ~Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 10 MARKYAILAVKADKEGK-VEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888886 99999999999999876543
No 284
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=75.75 E-value=52 Score=30.66 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 004812 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (729)
+.|...|+.|.++......+.+|.......+.+..|+. +++.++|..+.++|..-.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67889999999999888888889888888888877776 799999988877776543
No 285
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=74.67 E-value=52 Score=30.21 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 674 (729)
.+.|...|++|.++......|.||-......+.+.+|.. +++.++|..+.++++.-.-.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999888888899988888888877765 89999999999988865443
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.57 E-value=47 Score=29.62 Aligned_cols=88 Identities=8% Similarity=0.031 Sum_probs=61.6
Q ss_pred HHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004812 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ 365 (729)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 365 (729)
.++++++........-.+.+..+.+|...+..+ ..+...++..+|..+.... . ....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~---I---G~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKG---I---GTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHT---S---STTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCC---C---cHHHHHHHHHHHHHHHHcCC
Confidence 577777776543333333344566677766655 2344678888888766541 1 24577888999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004812 366 FSEAQKFCQMALDIH 380 (729)
Q Consensus 366 ~~~A~~~~~~al~~~ 380 (729)
+.+|...|+.+++..
T Consensus 131 ~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 131 FLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998865
No 287
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=74.56 E-value=12 Score=28.12 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (729)
.+..+...|...-..|+ |++|+.+|..|++.+-......+++..-..+.
T Consensus 12 ~A~~l~~~Av~~D~~g~-y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~ 60 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQ-YEEAYTAYYNGLDYLMLALKYEKNPKSKDLIR 60 (85)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45667888887878886 99999999999998876654444444433333
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.36 E-value=12 Score=32.33 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004812 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (729)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (729)
..++++++..+.....-.+++....+|...+... ++ +..+|...... +.....+..|...|..+...|+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~-----~IG~~~AlfY~~wA~~lE~~~~ 111 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQ-----GIGVSLAQFYISWAEEYEAREN 111 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHT-----TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCC
Confidence 4567888887655433345677778888777653 33 44455443322 4444557788899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004812 574 YSDSYDSFKNAISK 587 (729)
Q Consensus 574 ~~~A~~~~~~al~~ 587 (729)
+.+|..+|+.+++.
T Consensus 112 ~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 112 FRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999874
No 289
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=74.32 E-value=66 Score=31.34 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
++.+|.+|+...+....+.+. .-|..+|-.+++.+++.+|+..+-.|-...+.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 788999999998888777654 35667788999999999999999999887654
No 290
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=74.13 E-value=57 Score=30.43 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIY---EKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA 550 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 550 (729)
.-+..+|.+..+.++|++...+.+++.+.. ... . ..-.+.|..+|-. .|....+...+....+... .
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eL-----t---~EERnLLSvAyKNvIg~rR~swRiissieqke~-~ 99 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEEL-----T---VEERNLLSVAYKNAVGSRRSSWRIISSVEQKEH-S 99 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCC-----C---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhh-c
Confidence 445577888899999999999999988852 111 1 1223333333332 2333334444333222111 1
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHHHHHc----------CCHH
Q 004812 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKSAFFGVALNQMGLACVQR----------YSIN 617 (729)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~----------g~~~ 617 (729)
.+.... ..+..-|.. .=-.+-.......+.+..... ...+......+-..|..|.-. .-.+
T Consensus 100 k~~~~~-----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e 173 (260)
T 2npm_A 100 RNAEDA-----SKMCGKYRS-KVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAE 173 (260)
T ss_dssp TTCHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cCcHHH-----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHH
Confidence 111100 011111111 001122233344444443321 111111122233344444321 1236
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004812 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIRE 673 (729)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 673 (729)
.|...|++|.++. ....|.||-......+.+.+|.. +++.++|..+.++++.-.-
T Consensus 174 ~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 174 DALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 7889999999999 77888899988888888877766 8999999999998886543
No 291
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=74.03 E-value=54 Score=30.09 Aligned_cols=183 Identities=14% Similarity=0.108 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCC
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ 553 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 553 (729)
.-+..+|.+..+.++|++...+.+++.+..... ...-.+.|..+|-. .|....+...+....+... ..+.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL--------s~EERnLLSvaYKNvig~rR~swRiissieqke~-~~~~ 79 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL--------SCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSN-EEGS 79 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHh-hcCC
Confidence 345677889999999999999999988763221 12223344444432 2444444444433332221 1122
Q ss_pred CC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C-CCCChHHHHHHHHHHHHHHH-----cCC-----HHH
Q 004812 554 QS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI--G-ERKSAFFGVALNQMGLACVQ-----RYS-----INE 618 (729)
Q Consensus 554 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~~~la~~~~~-----~g~-----~~~ 618 (729)
.. ....-|. ..+ -.+-.......+.+.... . ...+......+-..|..|.- .|+ .+.
T Consensus 80 ~~~~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~ 151 (236)
T 3iqu_A 80 EEKGPEVREYR--EKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDS 151 (236)
T ss_dssp CCCCSHHHHHH--HHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred HHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHH
Confidence 11 1111111 000 011222333444443321 0 01111112223334555432 233 467
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 004812 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREE 674 (729)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 674 (729)
|...|+.|.++......|.||-......+.+.+|. -+++.++|..+.++|+.-.-.
T Consensus 152 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~ 208 (236)
T 3iqu_A 152 ARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMA 208 (236)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88999999999988888899998888888887766 569999999999888765433
No 292
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=72.39 E-value=59 Score=29.84 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 004812 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (729)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (729)
+.|...|+.|+++......+.||.......+.+..|+. +++.++|..+.+++..-.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57888999999999887888889888888888877776 799999998888776643
No 293
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=71.67 E-value=8 Score=28.46 Aligned_cols=41 Identities=15% Similarity=-0.015 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHh
Q 004812 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE 263 (729)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 263 (729)
.....+|+.+...|+ |+.|+.||+.+++.+.+....-.+|.
T Consensus 13 ~e~~k~ARe~Al~Gn-Ydta~~yY~g~~~qI~k~l~~~~d~~ 53 (78)
T 2rpa_A 13 VENVKLAREYALLGN-YDSAMVYYQGVLDQMNKYLYSVKDTH 53 (78)
T ss_dssp HHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 345789999999996 99999999999999888765444443
No 294
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=71.41 E-value=63 Score=29.67 Aligned_cols=178 Identities=13% Similarity=0.028 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-ALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
+..+|.+..+.++|++.+.+.+++.... .....+-...|..+|-. .|....+...+....+.....+.....
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~~-------~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~ 83 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEKG-------EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKG 83 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHH
Confidence 5567888899999999999999887651 12222333444444432 233334444443322222111111111
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HhCCCChhHHHHHHHHHHHHHH-----cCC-----HHHHHHH
Q 004812 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTM-----IANDQDAEVASVDCSIGDTYLS-----LSR-----YDEAGFA 454 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~~ 454 (729)
....-+.. .+ -.+-...+...+.++ ............+...|..|.. .|+ .+.|...
T Consensus 84 ~~i~~yr~--ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~a 155 (236)
T 3iqu_A 84 PEVREYRE--KV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSA 155 (236)
T ss_dssp SHHHHHHH--HH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHH--HH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHH
Confidence 11111110 00 001111222222221 1122222223333445655543 333 4678899
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 004812 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRI 503 (729)
Q Consensus 455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 503 (729)
|+.|.++......+.||.......+.+..|+. +++.++|..+.++|..-
T Consensus 156 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 156 YQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999888888889888888888877775 69999998887777654
No 295
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.13 E-value=17 Score=29.35 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHHH
Q 004812 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK-PSLELVMCLHVIAAIY 275 (729)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~-~~~~~~~~~~~la~~~ 275 (729)
.+..++..|...-..|+ |++|+.+|..|++++-...... .++..-..+.....-|
T Consensus 17 kAi~lv~~Ave~D~ag~-y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGN-YEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 45567788887878886 9999999999999987765433 3444333344333333
No 296
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.80 E-value=1.3e+02 Score=32.65 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH--HhcchHHHHHHHHHH
Q 004812 516 IASGLTDVSSIY--ESMNELEQAIKLLQK 542 (729)
Q Consensus 516 ~~~~~~~la~~~--~~~g~~~~A~~~~~~ 542 (729)
....+..+..++ +..|+++.|+..+++
T Consensus 535 t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 535 ICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555 678999999877766
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=69.62 E-value=88 Score=31.13 Aligned_cols=66 Identities=6% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004812 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (729)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (729)
++.+|.+|+...+....+.+. .-|..+|-.+++.+++.+|+..+-.|-...+.-.- ..+..++|-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY--~reDeEIYKE 363 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY--CREDEEIYKE 363 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--CGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCC--CcchHHHHHH
Confidence 788999999998888777654 35677888999999999999999999887655322 3344444443
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.03 E-value=12 Score=31.80 Aligned_cols=84 Identities=6% Similarity=-0.015 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 004812 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (729)
=..++++++..+.....-.+++....+|...+... .++...|.-.... +.....+..|...|..+...|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH-----GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT-----TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcC
Confidence 34567777777755333345666777777766543 2255555443321 334455778889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004812 573 NYSDSYDSFKNAISK 587 (729)
Q Consensus 573 ~~~~A~~~~~~al~~ 587 (729)
++.+|..+|+.+++.
T Consensus 116 ~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 116 ELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999874
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.89 E-value=47 Score=30.19 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=56.1
Q ss_pred HHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh
Q 004812 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363 (729)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 363 (729)
-..++++++........-.+....+.+|...+.. .+++..+|..+... .-....+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH------HIGQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT------TCSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC------CcchhHHHHHHHHHHHHHHc
Confidence 4567777776654333323333445556666553 24566666665443 11345778889999999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 004812 364 LQFSEAQKFCQMALDIH 380 (729)
Q Consensus 364 g~~~~A~~~~~~al~~~ 380 (729)
|++.+|..+|+.+++..
T Consensus 164 g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 164 GLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999998865
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.06 E-value=12 Score=33.97 Aligned_cols=84 Identities=5% Similarity=-0.010 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 004812 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (729)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (729)
=..++++++..+.....-.+++....+|...+.. . +++..+|.-.... +.....+..|...|..+...|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAHH-----HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHHT-----TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHHC-----CcchhHHHHHHHHHHHHHHcC
Confidence 3567888888876643344566777777777763 1 3444555443322 344455778889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004812 573 NYSDSYDSFKNAISK 587 (729)
Q Consensus 573 ~~~~A~~~~~~al~~ 587 (729)
++.+|..+|+.+++.
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 301
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=66.71 E-value=84 Score=31.34 Aligned_cols=54 Identities=7% Similarity=0.202 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004812 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (729)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (729)
.++.+|.+|+...+......+. .-|..+|-.+.+.+++.+|+.++..+-.....
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 4678999999999988777654 46777899999999999999999999887655
No 302
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=65.27 E-value=50 Score=30.85 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004812 306 AKFAGHMQLGDTYAMLGQ----------LENSLMCYTTGLEVQKQVL--GETDPRVGETCRYLAEAHV-QALQFSEAQKF 372 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 372 (729)
..+..+-..|..|..+-. .+.|...|++|.++....+ .+.+|-......+.+..|+ ..++.++|..+
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444456666887765432 3678899999999998777 7778887777777777766 57999999999
Q ss_pred HHHHHHH
Q 004812 373 CQMALDI 379 (729)
Q Consensus 373 ~~~al~~ 379 (729)
.++|++.
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999887
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.60 E-value=27 Score=30.09 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHc
Q 004812 242 LELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321 (729)
Q Consensus 242 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 321 (729)
..+++++++.+.....=..++....+|...+... ..+..+|..+... ..|...+. .|...|..+...
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~---~IG~~~Al----fY~~wA~~lE~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ---GIGVSLAQ----FYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT---TSSTTBHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC---CcchhhHH----HHHHHHHHHHHc
Confidence 5577888877755444455577777777666553 3466666655433 22333332 388899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 004812 322 GQLENSLMCYTTGLEV 337 (729)
Q Consensus 322 g~~~~A~~~~~~al~~ 337 (729)
|++.+|..+|+.+++.
T Consensus 110 ~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999987
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.28 E-value=25 Score=29.79 Aligned_cols=84 Identities=11% Similarity=0.039 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH
Q 004812 241 ALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320 (729)
Q Consensus 241 A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 320 (729)
-..+++++++.+.....=..++.....+...+.. ..++..+|....... .|..... .|...|..+..
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~---IG~~~Al----fYe~wA~~lE~ 113 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHG---IGTLSSP----LYIAWAGHLEA 113 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTT---TTTTBHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCC---CcHHHHH----HHHHHHHHHHH
Confidence 4566778877775544344556666666655543 345777777765442 2333332 38889999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 004812 321 LGQLENSLMCYTTGLEV 337 (729)
Q Consensus 321 ~g~~~~A~~~~~~al~~ 337 (729)
.|++.+|..+|+.+++.
T Consensus 114 ~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 114 QGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999999886
No 305
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=60.69 E-value=1.1e+02 Score=28.41 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004812 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-ALQFSEAQKFCQMALDIHKDNGSPASL 389 (729)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (729)
+..+|.+..+.++|++...+.+++.... .....+-...|..+|-. .|....+...+....+.....+.....
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~-------~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~ 79 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELN-------EPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKI 79 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHH
Confidence 5567888899999999999988887651 11222333344444432 233333333332222221111111111
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HhCCCC--hhHHHHHHHHHHHHHHcCC----------HHHHH
Q 004812 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTM-----IANDQD--AEVASVDCSIGDTYLSLSR----------YDEAG 452 (729)
Q Consensus 390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~--~~~~~~~~~la~~~~~~g~----------~~~A~ 452 (729)
.....+. ..+- .+-...+...+.++ ...... ......+...|..|..+-. .+.|.
T Consensus 80 ~~i~~yr--~kie------~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~ 151 (248)
T 3uzd_A 80 EMVRAYR--EKIE------KELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSE 151 (248)
T ss_dssp HHHHHHH--HHHH------HHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHH------HHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHH
Confidence 1111110 0000 11111222222221 222222 2333344445666543321 36788
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 004812 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (729)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (729)
..|+.|.++......+.||.......+.+.+|+. +++.++|..+.++|..-.
T Consensus 152 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 152 KAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999888888899888888888877766 799999998887776643
No 306
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=59.48 E-value=55 Score=24.74 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004812 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (729)
Q Consensus 303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (729)
.+...+-.+-..+..+...|+|++||.+.+++.........
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445556778999999999999999999999887655443
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.47 E-value=49 Score=38.04 Aligned_cols=98 Identities=9% Similarity=-0.119 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------Hh-cCCCCCHhHHHHHHHHHHHHHHcCChHH
Q 004812 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFE-------------IG-ANGKPSLELVMCLHVIAAIYCSLGQYNE 283 (729)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~-------------~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~ 283 (729)
|..+..-+.+|++++..|+ +++|..+|++|-.-+. .+ ............|..+..++...+-++-
T Consensus 837 ~~t~~~~yv~gr~~L~~ge-~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~ 915 (950)
T 4gq2_M 837 NSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 915 (950)
T ss_dssp CSSHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHH
Confidence 4444556889999999998 9999999988652210 00 0011112233467788888999999999
Q ss_pred HHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH
Q 004812 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320 (729)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 320 (729)
++.+.+.|++... .+++......|..+=.....
T Consensus 916 vi~fA~lAI~~~~----~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 916 ALEFSLLADASKE----TDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHTCC----SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc----cCCccchHHHHHHHHHHHhh
Confidence 9999999997642 33333334445554444433
No 308
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=54.73 E-value=68 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHH
Q 004812 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGT--ANPDVDDEKRRLAELL 694 (729)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~La~~~ 694 (729)
.|.-....|++++|+.+|..+++++...+.. .++.....+.....-|
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3344566799999999999999998776532 3444344444333333
No 309
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=53.97 E-value=31 Score=32.23 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHH
Q 004812 616 INEAVELFEEARSILEQEC--GPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGI 671 (729)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 671 (729)
.+.|...|+.|.++..... .|.||-......+.+..|. -+++.++|..+.++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999998877 7889988888888888776 579999999999998865
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.65 E-value=1.1e+02 Score=35.07 Aligned_cols=71 Identities=7% Similarity=-0.018 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004812 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAF-------------KTNK--GENHPAVASVFVRLADMYNRTGKLRESKSYCE 498 (729)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 498 (729)
.-+.+|.+|...|++++|..+|++|-.-. .... .+........|..+..++...+-++-++.+.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34779999999999999999998764210 0000 00011233467778888888888888888888
Q ss_pred HHHHHH
Q 004812 499 NALRIY 504 (729)
Q Consensus 499 ~al~~~ 504 (729)
.|+...
T Consensus 922 lAI~~~ 927 (950)
T 4gq2_M 922 LADASK 927 (950)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 888764
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.37 E-value=30 Score=29.61 Aligned_cols=73 Identities=4% Similarity=-0.136 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR-RLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
+.-+..++..|+|-+|-+.++.+-...+..........+.+. ...|..+...|+...|...+.+++..+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445667778899999999998877654322111223445555 6667778889999999999999987765543
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=50.98 E-value=76 Score=23.79 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHH
Q 004812 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDE 686 (729)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~ 686 (729)
+...|.-....|++++|+.+|..+++.+...+. ..+|.....
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~ 61 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 61 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 344455567889999999999999998876653 334443333
No 313
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.94 E-value=78 Score=32.53 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhCCC
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEK--PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI-YNDAPG 552 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~ 552 (729)
....+-.+|++.++..-+...+...-.. .- ....-.....+..++.+|.++...++|.+|.+.+..|+.. ++...+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 3445668899999999998888554332 11 0111224467788999999999999999999999999999 875432
Q ss_pred C---CCcHHHHHHHHHHHHHHcCCH
Q 004812 553 Q---QSTVAGIEAQMGVMYYMLGNY 574 (729)
Q Consensus 553 ~---~~~~~~~~~~la~~~~~~g~~ 574 (729)
. ......++..+.-+-.-+|++
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhhHHHHHHHHHHHHHHHcCCC
Confidence 1 111223333444444445654
No 314
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.53 E-value=77 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=23.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
..|.-....|++++|+.+|..+++.+...+
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999876654
No 315
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=47.45 E-value=91 Score=23.73 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHH
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDD 685 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~ 685 (729)
...|.-....|++++|+.+|..+++.+...+. ..+|....
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~ 59 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRC 59 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34444557789999999999999998877653 33444433
No 316
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.39 E-value=84 Score=23.31 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004812 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (729)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (729)
..|.-....|++++|+.+|..+++.+...+
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 334455788999999999999999876654
No 317
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=46.28 E-value=89 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHHH
Q 004812 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEKR 688 (729)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~p~~~~~~~ 688 (729)
...|.-....|++++|+.+|..+++.+...+. ..+|.....+.
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~ 60 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIR 60 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444556789999999999999998766542 33444433333
No 318
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=46.00 E-value=2.1e+02 Score=27.37 Aligned_cols=119 Identities=7% Similarity=-0.070 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHH
Q 004812 304 ALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS--EAQKFCQMALD 378 (729)
Q Consensus 304 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~ 378 (729)
+...+..+..-|.+--..|- -+-|-++|.+|+.++++-..+. .....+...+...+.+...+. .-..+..++-.
T Consensus 95 ~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdS-k~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~ 173 (298)
T 2r17_C 95 AELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDS-KAQLAAITLIIGTFERMKCFSEENHEPLRTQCAL 173 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHH
Confidence 34445566666666666666 6678889999999988754332 233445555555555544432 11222222222
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHhC
Q 004812 379 IHKDNGSPASLEEAADRRLMGLICET----------KGDHEAALEHLVLASMTMIAN 425 (729)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~~~~ 425 (729)
...+.. ..+....+...-+.+++. ..+-+..++++++++++....
T Consensus 174 ~askLL--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~ 228 (298)
T 2r17_C 174 AASKLL--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQC 228 (298)
T ss_dssp HHHTCS--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcc--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHH
Confidence 222222 224445555666666664 146678888888887766554
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=44.97 E-value=25 Score=25.82 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
.-...+|+=|...|+|+.|+.+|+.+++...+
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999987655
No 320
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.70 E-value=67 Score=33.04 Aligned_cols=70 Identities=9% Similarity=-0.079 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHh
Q 004812 354 RYLAEAHVQALQFSEAQKFCQMALDIHKD---NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT-MIA 424 (729)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~ 424 (729)
..|-.+|++.++..-+..+++.. +.... .........+..++.+|.++...++|.+|.+++..|+.. ...
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 34557899999999888887544 32211 111133456778899999999999999999999999877 543
No 321
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=41.62 E-value=74 Score=26.40 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004812 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (729)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (729)
+..+|+-++-.+.+...+.- .+-.+..+..+|.+|.+.|+..+|.+++.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n--------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKN--------NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhcc--------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44566766655555543322 444566889999999999999999999999875
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.33 E-value=53 Score=28.10 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL-NQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
+..+..++..|+|=+|-+.++.+......-........+.+. ...|....+.|+..-|..++.+++..+...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 345677778899999988888765432100001112233344 445666778899999999999999987654
No 323
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=39.13 E-value=1.6e+02 Score=24.53 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD 685 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 685 (729)
.++..|.+|...|+.+.|.-+|-+.+.++..+ +.||+...
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 44667899999999999999999999998654 67888754
No 324
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.44 E-value=36 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+|+.+...|++++|. .+|-+|+..+|+
T Consensus 21 V~~GE~L~~~g~~~~~~-~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGV-DHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHHcCC
Confidence 46799999999999999 999999999887
No 325
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.76 E-value=1e+02 Score=23.54 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (729)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (729)
..|..++..|+|=+|-+.++..-...+. +......+.+....|......|+. |..++.+++..+...
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 3466777889999998888877654311 111122334444555666678888 999999999987654
No 326
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.63 E-value=79 Score=24.16 Aligned_cols=67 Identities=12% Similarity=-0.047 Sum_probs=44.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004812 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (729)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (729)
.|..++..|+|-+|-+.++.+-...+.. ........+....|..+...|+. |...+.+++..+...+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~--~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGE--ERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 4556777889999888888877654221 12233444555566667778888 8888888887665544
No 327
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=34.54 E-value=1.4e+02 Score=22.23 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH-HHHHHHHH
Q 004812 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK-RRLAELLK 695 (729)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~-~~La~~~~ 695 (729)
.....-|.-+.+.++|.+|..+|+++..+ .++|..-.++ +.++.+-.
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHH
Confidence 34455566788999999999999999876 5677776666 66666543
No 328
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=32.88 E-value=1.2e+02 Score=27.21 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=31.7
Q ss_pred CCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004812 260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (729)
Q Consensus 260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (729)
+..+.+..++.+|.+++..++|.+|.+.|..|+...
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHC 44 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHC
Confidence 345667788899999999999999999999999875
No 329
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.73 E-value=82 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004812 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (729)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (729)
..+|+.+...|+++.|+ .+|-+|+..+|+
T Consensus 24 V~lGE~L~~~g~~e~av-~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGV-DHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHH-HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHHcCC
Confidence 35788999999999999 989999988886
No 330
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=32.31 E-value=2.1e+02 Score=29.32 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004812 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL 364 (729)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 364 (729)
++|+.+|++|+...+++-..+++.....+..++..|...|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aG 488 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhcc
Confidence 5788888888888888776777777777777666554433
No 331
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=32.04 E-value=3.8e+02 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 004812 305 LAKFAGHMQLGDTYAMLG---------QLENSLMCYTTGLEVQK 339 (729)
Q Consensus 305 ~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~ 339 (729)
...+.+++++|.+|...+ ....|..+|++|--++.
T Consensus 114 fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~ 157 (363)
T 3rau_A 114 YEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFA 157 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 345667888888886654 25678888888866654
No 332
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=31.81 E-value=2.7e+02 Score=28.27 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hcCCC-------Chh----------------------HHH
Q 004812 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQ------ECGPY-------HPD----------------------TLG 643 (729)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-------~~~----------------------~~~ 643 (729)
....+..|+..+...|+|.+|.-++..+..+..+ ....+ .|. ...
T Consensus 10 ~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ 89 (428)
T 2wm9_A 10 RKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLME 89 (428)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHH
Confidence 3456778999999999999999888754433222 11000 110 011
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (729)
.+...+..+.+-+.|+.|+.+++..+..++..
T Consensus 90 ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~ 121 (428)
T 2wm9_A 90 LLEQCADGLWKAERYELIADIYKLIIPIYEKR 121 (428)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 34445556667778888888888888877653
No 333
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.45 E-value=1.6e+02 Score=21.93 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHH
Q 004812 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC-RYLAEAH 360 (729)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 360 (729)
.++.+..-|.-++..++|.+|...|+++... .++|..-.++ +.++.|-
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 3455777788899999999999999999877 2345555554 5555553
No 334
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.45 E-value=1e+02 Score=23.62 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
...+|..+...|+++.|+.+|-+|+.++.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356788899999999999999999998654
No 335
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.91 E-value=74 Score=22.99 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004812 476 VFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (729)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (729)
-...+|..+...|++++|..+|-+|+..+.+
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3456789999999999999999999998644
No 336
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=30.73 E-value=1.7e+02 Score=30.06 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004812 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (729)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (729)
++|+++|++|+..++++...+++.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 67888888888888888877788888888888877766554
No 337
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.41 E-value=1.9e+02 Score=25.83 Aligned_cols=59 Identities=5% Similarity=0.013 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH
Q 004812 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (729)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (729)
.......+.+|.++...++|.+|...+..|+..+.+. .......++..|.-+-.-+|++
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~----~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS----SQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh----HHHHHHHHHHHHHHHHHHcCCC
Confidence 4456778899999999999999999999999986542 1333444455555455556654
No 338
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.49 E-value=2.1e+02 Score=23.77 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004812 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (729)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (729)
.+-.+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455788999999999999999999999988764
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.81 E-value=6.3e+02 Score=27.28 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004812 225 LKQARELISSGDNPQKALELALRAAK 250 (729)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~ 250 (729)
+.+.-.+++.|+ +++|.++..++-.
T Consensus 156 Wa~IyY~LR~G~-~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 156 WALIFYLLRAGL-IKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHHHTTTC-HHHHHHHHHHTGG
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHhhh
Confidence 345556788897 9999998877643
No 340
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.92 E-value=77 Score=32.69 Aligned_cols=33 Identities=9% Similarity=-0.121 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004812 598 FFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (729)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (729)
....++..+|++|+..|+|++|+.+.++++...
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 355678889999999999999999999998753
No 341
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=25.71 E-value=80 Score=26.53 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 004812 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683 (729)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~ 683 (729)
.++..|.+|...|+.+.|.-+|-++..++-..+ +.||++
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy 80 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccc
Confidence 456678999999999999999999998875443 345655
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.34 E-value=85 Score=32.44 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (729)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (729)
.....++..+|++|+..|+|++|+.+.++++..
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345668888999999999999999999999875
No 343
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.58 E-value=1.1e+02 Score=31.47 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+....++..++.+|...|++++|+.+.++++.
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 33455677777888888888888877777664
No 344
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=23.50 E-value=5.6e+02 Score=25.57 Aligned_cols=170 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHhcchHHHHH--------HHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHHHH
Q 004812 525 SIYESMNELEQAI--------KLL-QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD-----SFKNAISKLRA 590 (729)
Q Consensus 525 ~~~~~~g~~~~A~--------~~~-~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~ 590 (729)
.++...+++.+|+ +++ ++..+.+-........+..++..+.. +++...+. -+++++.++-.
T Consensus 164 ~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~-----~n~~d~V~~~~l~~WkE~La~i~t 238 (399)
T 2pm7_A 164 KNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISK-----REVDDLVENLDVSQWKFISKAIQN 238 (399)
T ss_dssp HHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHT-----TCCHHHHHHBCGGGHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHc-----cCHHHHHhcCChhhHHHHHHHHHh
Q ss_pred hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------ChHHH
Q 004812 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------RLDDA 661 (729)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A 661 (729)
...............||.-+...|+...|.-+|--+-.+ .....+|...-.-....+ -...+
T Consensus 239 ~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~---------dk~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~ 309 (399)
T 2pm7_A 239 LYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSL---------DKVASIWLSEFPDLEDKLKKDNKTIYEAHSEC 309 (399)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCH---------HHHHHHHHHSHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCH---------HHHHHHHHHhcchhhhccccccCCcccccHHH
Q ss_pred HHHHHHHHHHHHHHcCC----CChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004812 662 IEILEFVVGIREEKLGT----ANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (729)
Q Consensus 662 ~~~~~~al~~~~~~~~~----~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (729)
+.-+-+-+.+++...+. ..+.....+...|.++...|+.+.|. ++++
T Consensus 310 Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~-~yL~ 360 (399)
T 2pm7_A 310 MTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELAT-EFLN 360 (399)
T ss_dssp HHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHH-HHHH
No 345
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=22.88 E-value=5.2e+02 Score=26.09 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004812 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (729)
Q Consensus 304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 337 (729)
|...+..+..|+..+...|+|.+|--++..+..+
T Consensus 7 pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 7 PELRKTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4445566889999999999999999888755543
No 346
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=22.78 E-value=5.7e+02 Score=25.38 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhCCCC----CC-------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004812 535 QAIKLLQKALKIYNDAPGQ----QS-------------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (729)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~----~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (729)
++..+|+++.......... .. ..+.+++..|..+...+++-+|+..++.|.+.+...
T Consensus 217 ~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 3456788888877755311 01 112234445666666777777777777777665543
No 347
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=22.01 E-value=5.8e+02 Score=25.18 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHH
Q 004812 306 AKFAGHMQLGDTYAMLG------------QLENSLMCYTTGLEVQK 339 (729)
Q Consensus 306 ~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~~ 339 (729)
..+.+++++|.+|...+ ....|..+|++|--++.
T Consensus 112 E~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 112 ELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34556777777776543 25677788888765543
No 348
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.01 E-value=1.2e+02 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.126 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004812 389 LEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (729)
Q Consensus 389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 420 (729)
+....++..+|.+|...|+|++|..+.++++.
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34456677778888888888888887777664
No 349
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.37 E-value=3.1e+02 Score=21.79 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-------CCChhHHHHH
Q 004812 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-------TANPDVDDEK 687 (729)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~p~~~~~~ 687 (729)
.+++|..+..++|.+ ...|+.+.|+++|++.+..+.+-+. ...|....+.
T Consensus 18 ~h~~AF~~Is~AL~~-----------------------DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar 74 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNT-----------------------DELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESAR 74 (116)
T ss_dssp HHHHHHHHHHHHHHH-----------------------HHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhhh-----------------------hhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 356777777777766 2238889999999999888777654 1234444444
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004812 688 RRLAELLKEAGRVRSRKAQSLETLLD 713 (729)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~ 713 (729)
.........++...+-+ ..|+....
T Consensus 75 ~lq~KM~~nL~~v~~RL-~~Le~~~~ 99 (116)
T 2dl1_A 75 QMQQKMKETLQNVRTRL-EILEKGLA 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCC
Confidence 44444444445555555 55555544
No 350
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=21.34 E-value=3.3e+02 Score=27.20 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 004812 238 PQKALELALRAAKSFEIGA 256 (729)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~ 256 (729)
...|..+|++|.-++..+.
T Consensus 145 lk~A~~~fq~AAG~f~~l~ 163 (392)
T 1zb1_A 145 YKNSIANLTKAFSCFEYLS 163 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999998887653
No 351
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=21.33 E-value=6.5e+02 Score=25.48 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-------------
Q 004812 409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS------------- 475 (729)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~------------- 475 (729)
+.-..+.-+.+..+...+........+..|+..+...++|.+|--++.....++.-......+....
T Consensus 12 d~r~~~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~k 91 (436)
T 2yin_A 12 DNRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLK 91 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHH
T ss_pred chHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHH
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 004812 476 --VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (729)
Q Consensus 476 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (729)
.+...+..+.+-+.|+.|+.+++..+..++.. ..+-...+.++..++.+|..
T Consensus 92 e~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~--~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 92 ETLYETIIGYFDKGKMWEEAISLCKELAEQYEME--IFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
No 352
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.14 E-value=1.4e+02 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004812 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (729)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (729)
+....++..+|++|+..++|++|..+.++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445677888999999999999999999999864
Done!