BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004813
(729 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 150 AMRVLVNMNSGGFKLSVDVFNVVL------GAIVEEK------RGFADFVFVYKEMVKAG 197
A+R+ G +LS +NV+L A E RGF ++K+M+
Sbjct: 45 ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD----IFKQMIVDK 100
Query: 198 IVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSV 257
+VPN T + + E A D ++M G P R++ + G D +
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160
Query: 258 SILGEM 263
+ M
Sbjct: 161 EVDAHM 166
>pdb|1SC1|A Chain A, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|2FQQ|A Chain A, Crystal Structure Of Human Caspase-1 (Cys285->ala,
Cys362->ala, Cys364->ala, Cys397->ala) In Complex With
1-Methyl-3-Trifluoromethyl-
1h-Thieno[2,3-C]pyrazole-5-Carboxylic Acid
(2-Mercapto-Ethyl)-Amide
Length = 178
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 12 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 53
>pdb|3D6M|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 13 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 54
>pdb|3D6H|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Asn263->ser Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 13 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 54
>pdb|3D6F|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 13 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 54
>pdb|2HBR|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 12 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 53
>pdb|1RWK|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-3-
Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2H48|A Chain A, Crystal Structure Of Human Caspase-1 (Cys362->ala,
Cys364->ala, Cys397->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-
Butyrylamino)-Propionylamino]-4-Oxo-Pentanoic Acid
(Z-Vad-Fmk)
pdb|2HBQ|A Chain A, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBY|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4W|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H54|A Chain A, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 12 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 53
>pdb|2H4Y|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 12 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 53
>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 194
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 28 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 69
>pdb|1ICE|A Chain A, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|A Chain A, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
Length = 167
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 1 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 42
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 451 GKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVE 491
G KLC+ E+A R+++Q SA+ ++D S ++L +C E
Sbjct: 29 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEE 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,664,466
Number of Sequences: 62578
Number of extensions: 719967
Number of successful extensions: 1531
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 16
length of query: 729
length of database: 14,973,337
effective HSP length: 106
effective length of query: 623
effective length of database: 8,340,069
effective search space: 5195862987
effective search space used: 5195862987
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)