Query 004813
Match_columns 729
No_of_seqs 749 out of 3733
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 13:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.6E-81 1E-85 698.4 70.1 651 55-728 46-703 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-77 2.3E-82 671.4 65.1 597 64-687 125-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.9E-71 6.3E-76 604.1 68.7 523 128-688 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 9.6E-70 2.1E-74 592.3 68.2 522 94-653 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4E-64 8.7E-69 548.4 53.4 510 62-618 89-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 5.3E-64 1.2E-68 547.4 51.7 475 164-685 85-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-36 3.1E-41 350.4 79.3 618 72-709 273-893 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-36 1.1E-40 345.7 78.6 620 65-702 164-819 (899)
9 PRK11447 cellulose synthase su 100.0 8.5E-28 1.8E-32 275.8 71.0 627 66-709 34-733 (1157)
10 PRK11447 cellulose synthase su 100.0 2.2E-26 4.7E-31 264.3 70.6 600 66-684 68-744 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2E-22 4.4E-27 220.2 69.2 574 71-680 55-705 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.3E-21 2.8E-26 214.0 66.5 572 105-709 53-699 (987)
13 KOG2002 TPR-containing nuclear 99.9 5.6E-21 1.2E-25 194.6 52.2 568 76-681 146-745 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 1.4E-20 3E-25 181.8 40.7 443 134-627 51-500 (966)
15 KOG2002 TPR-containing nuclear 99.9 4.6E-19 1E-23 180.8 52.0 588 77-710 111-739 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 9.9E-21 2.1E-25 182.9 37.6 445 207-667 53-505 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 5.2E-19 1.1E-23 191.1 52.3 433 203-681 128-571 (615)
18 PRK11788 tetratricopeptide rep 99.9 8.3E-21 1.8E-25 195.0 33.7 311 380-702 42-362 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-18 7.1E-23 184.9 51.0 429 168-646 129-571 (615)
20 PRK11788 tetratricopeptide rep 99.9 5.5E-20 1.2E-24 189.0 33.1 300 282-618 45-354 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.1E-17 2.4E-22 179.8 46.1 358 214-611 17-381 (656)
22 PRK15174 Vi polysaccharide exp 99.9 3.1E-17 6.8E-22 176.3 46.1 328 102-471 48-381 (656)
23 PRK10049 pgaA outer membrane p 99.9 6.5E-17 1.4E-21 177.9 49.3 421 205-697 18-470 (765)
24 PRK10049 pgaA outer membrane p 99.9 1.5E-16 3.3E-21 174.9 50.1 418 163-619 12-462 (765)
25 KOG2076 RNA polymerase III tra 99.9 3.5E-15 7.6E-20 151.9 55.2 608 67-681 146-849 (895)
26 PRK14574 hmsH outer membrane p 99.8 1.6E-15 3.5E-20 163.1 52.3 449 176-690 44-520 (822)
27 KOG0495 HAT repeat protein [RN 99.8 1.4E-13 3.1E-18 134.9 58.2 575 74-680 265-879 (913)
28 PRK14574 hmsH outer membrane p 99.8 9.1E-15 2E-19 157.3 54.8 202 413-618 298-518 (822)
29 KOG4422 Uncharacterized conser 99.8 4.1E-15 8.9E-20 138.2 43.1 436 107-614 126-593 (625)
30 KOG2076 RNA polymerase III tra 99.8 6.2E-14 1.3E-18 143.0 53.1 578 99-695 142-781 (895)
31 KOG0495 HAT repeat protein [RN 99.8 4.1E-13 9E-18 131.7 56.5 569 110-705 265-869 (913)
32 KOG4422 Uncharacterized conser 99.8 5.9E-14 1.3E-18 130.6 42.5 449 164-697 114-606 (625)
33 KOG2003 TPR repeat-containing 99.8 3.8E-14 8.2E-19 132.7 39.2 280 381-668 427-710 (840)
34 KOG2003 TPR repeat-containing 99.8 4E-15 8.7E-20 139.1 32.7 482 205-704 204-711 (840)
35 KOG1915 Cell cycle control pro 99.8 1.6E-12 3.4E-17 122.9 49.3 477 96-645 73-584 (677)
36 KOG1915 Cell cycle control pro 99.7 1.2E-11 2.5E-16 117.1 50.5 466 72-610 85-584 (677)
37 KOG4318 Bicoid mRNA stability 99.7 2.4E-14 5.3E-19 145.0 33.9 577 89-699 18-642 (1088)
38 KOG4318 Bicoid mRNA stability 99.7 2.1E-13 4.5E-18 138.4 32.6 512 117-707 11-616 (1088)
39 KOG1155 Anaphase-promoting com 99.6 4.3E-11 9.2E-16 113.3 40.9 310 380-700 234-553 (559)
40 TIGR00540 hemY_coli hemY prote 99.6 2.2E-12 4.8E-17 131.7 32.8 293 384-680 95-398 (409)
41 KOG2047 mRNA splicing factor [ 99.6 3.9E-09 8.5E-14 104.3 52.2 551 67-674 109-716 (835)
42 PF13429 TPR_15: Tetratricopep 99.6 4.8E-15 1E-19 143.7 11.9 261 412-679 13-275 (280)
43 PRK10747 putative protoheme IX 99.6 5.1E-12 1.1E-16 128.2 33.6 284 386-680 97-389 (398)
44 PRK10747 putative protoheme IX 99.6 6.7E-12 1.4E-16 127.4 34.4 223 380-610 160-389 (398)
45 KOG1173 Anaphase-promoting com 99.6 4E-11 8.7E-16 116.5 37.1 285 407-699 244-534 (611)
46 KOG1155 Anaphase-promoting com 99.6 1.3E-10 2.8E-15 110.1 39.1 309 280-628 235-551 (559)
47 KOG0547 Translocase of outer m 99.6 2E-11 4.4E-16 116.1 34.0 428 206-680 119-565 (606)
48 PF13429 TPR_15: Tetratricopep 99.6 1.6E-14 3.5E-19 140.0 13.2 227 377-609 48-275 (280)
49 KOG1126 DNA-binding cell divis 99.6 9E-13 2E-17 130.5 24.6 283 388-681 334-620 (638)
50 TIGR00540 hemY_coli hemY prote 99.6 6.9E-12 1.5E-16 128.0 31.8 287 418-711 95-394 (409)
51 COG2956 Predicted N-acetylgluc 99.6 2.4E-11 5.3E-16 109.5 29.8 293 285-611 48-347 (389)
52 COG2956 Predicted N-acetylgluc 99.5 4.2E-11 9.2E-16 108.0 30.4 290 215-540 48-346 (389)
53 KOG2047 mRNA splicing factor [ 99.5 2.5E-08 5.3E-13 98.8 51.3 532 131-680 102-686 (835)
54 KOG1126 DNA-binding cell divis 99.5 3.1E-12 6.8E-17 126.8 24.3 281 288-611 335-620 (638)
55 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.7E-15 108.6 32.9 299 215-546 97-395 (400)
56 KOG0985 Vesicle coat protein c 99.5 4E-09 8.6E-14 109.1 46.4 531 134-709 609-1271(1666)
57 KOG3785 Uncharacterized conser 99.5 4.2E-10 9E-15 102.8 35.1 82 522-605 369-451 (557)
58 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.5E-15 108.8 32.1 287 285-611 97-390 (400)
59 KOG1173 Anaphase-promoting com 99.5 1.1E-09 2.5E-14 106.6 39.8 239 379-625 284-530 (611)
60 KOG0547 Translocase of outer m 99.5 1.1E-10 2.5E-15 111.1 32.1 84 134-222 118-203 (606)
61 KOG3785 Uncharacterized conser 99.5 1.1E-08 2.3E-13 93.8 40.1 278 70-373 32-316 (557)
62 KOG1156 N-terminal acetyltrans 99.4 5.8E-08 1.3E-12 96.5 43.7 429 181-647 21-469 (700)
63 KOG1156 N-terminal acetyltrans 99.4 4.2E-08 9E-13 97.6 42.2 456 72-575 19-510 (700)
64 KOG4162 Predicted calmodulin-b 99.4 9.5E-08 2.1E-12 97.1 43.8 128 549-680 652-782 (799)
65 KOG2376 Signal recognition par 99.4 8.2E-09 1.8E-13 101.3 34.9 146 527-676 356-515 (652)
66 KOG3617 WD40 and TPR repeat-co 99.4 1.9E-07 4.2E-12 95.1 45.2 136 73-228 741-884 (1416)
67 KOG1129 TPR repeat-containing 99.4 1.5E-10 3.3E-15 104.4 20.9 238 441-687 222-462 (478)
68 PRK12370 invasion protein regu 99.4 5.6E-10 1.2E-14 118.6 29.2 250 423-682 277-536 (553)
69 TIGR02521 type_IV_pilW type IV 99.3 8.6E-10 1.9E-14 104.6 26.6 201 476-680 30-231 (234)
70 PRK12370 invasion protein regu 99.3 6E-10 1.3E-14 118.4 27.0 244 456-709 275-529 (553)
71 KOG2376 Signal recognition par 99.3 5E-08 1.1E-12 95.9 36.9 450 207-711 17-515 (652)
72 TIGR02521 type_IV_pilW type IV 99.3 2.7E-09 5.9E-14 101.1 26.8 200 442-645 31-231 (234)
73 KOG1127 TPR repeat-containing 99.3 1E-06 2.3E-11 92.0 44.6 182 75-265 473-658 (1238)
74 KOG4162 Predicted calmodulin-b 99.3 1.9E-06 4.2E-11 87.9 45.3 128 480-610 653-782 (799)
75 PF12569 NARP1: NMDA receptor- 99.3 1.1E-08 2.3E-13 104.7 30.1 291 381-680 12-333 (517)
76 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.8E-16 82.1 6.4 50 200-249 1-50 (50)
77 KOG1129 TPR repeat-containing 99.3 1.6E-09 3.4E-14 98.0 20.5 231 274-540 225-457 (478)
78 COG3063 PilF Tfp pilus assembl 99.2 4E-09 8.7E-14 91.1 21.6 189 517-709 40-229 (250)
79 PF13041 PPR_2: PPR repeat fam 99.2 3.4E-11 7.5E-16 80.7 6.5 49 270-318 1-49 (50)
80 KOG3616 Selective LIM binding 99.2 1.7E-06 3.8E-11 87.2 41.4 515 70-644 716-1352(1636)
81 PF12569 NARP1: NMDA receptor- 99.2 6.1E-08 1.3E-12 99.3 31.6 127 516-644 198-332 (517)
82 KOG3616 Selective LIM binding 99.2 7.3E-07 1.6E-11 89.8 37.4 386 181-640 545-931 (1636)
83 KOG0985 Vesicle coat protein c 99.2 1.2E-05 2.7E-10 84.2 54.7 117 547-678 1104-1220(1666)
84 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3.1E-13 102.4 25.6 237 443-679 200-477 (508)
85 KOG1174 Anaphase-promoting com 99.2 4.9E-06 1.1E-10 78.5 43.4 398 130-577 96-501 (564)
86 KOG4340 Uncharacterized conser 99.2 7.6E-08 1.7E-12 86.2 25.9 193 100-303 14-209 (459)
87 PRK11189 lipoprotein NlpI; Pro 99.1 4.7E-08 1E-12 94.9 26.7 230 457-696 41-279 (296)
88 KOG0548 Molecular co-chaperone 99.1 2.6E-07 5.6E-12 90.2 31.0 238 445-699 227-471 (539)
89 KOG1127 TPR repeat-containing 99.1 7.4E-06 1.6E-10 85.9 42.9 455 111-574 473-994 (1238)
90 KOG1840 Kinesin light chain [C 99.1 8.9E-08 1.9E-12 96.8 28.6 246 273-573 200-476 (508)
91 KOG3617 WD40 and TPR repeat-co 99.1 7E-06 1.5E-10 84.1 41.1 186 104-333 808-993 (1416)
92 KOG1174 Anaphase-promoting com 99.1 5.2E-06 1.1E-10 78.3 37.1 158 377-537 236-393 (564)
93 COG3063 PilF Tfp pilus assembl 99.1 1.8E-07 3.9E-12 81.2 24.4 208 480-693 38-246 (250)
94 PRK11189 lipoprotein NlpI; Pro 99.1 1.8E-07 3.9E-12 90.9 26.8 228 420-657 39-275 (296)
95 KOG4340 Uncharacterized conser 99.0 2.5E-06 5.4E-11 76.8 29.6 352 131-503 10-372 (459)
96 KOG2053 Mitochondrial inherita 99.0 6.3E-05 1.4E-09 78.5 46.5 224 72-302 21-256 (932)
97 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.7E-11 88.8 32.2 299 377-681 10-336 (355)
98 KOG0548 Molecular co-chaperone 99.0 1.3E-05 2.7E-10 78.8 34.7 104 69-176 11-114 (539)
99 cd05804 StaR_like StaR_like; a 98.9 5.7E-06 1.2E-10 83.9 34.1 200 96-300 6-214 (355)
100 PRK04841 transcriptional regul 98.9 9.7E-05 2.1E-09 85.3 48.2 372 207-611 346-760 (903)
101 KOG0624 dsRNA-activated protei 98.9 8.8E-06 1.9E-10 74.9 28.3 188 488-680 166-369 (504)
102 KOG0624 dsRNA-activated protei 98.9 6.7E-05 1.4E-09 69.3 33.9 307 278-646 44-370 (504)
103 PF04733 Coatomer_E: Coatomer 98.8 1.3E-07 2.8E-12 90.2 14.1 81 458-540 183-264 (290)
104 PRK04841 transcriptional regul 98.8 3.2E-05 6.9E-10 89.3 36.4 262 211-472 461-761 (903)
105 KOG1914 mRNA cleavage and poly 98.8 0.00027 5.8E-09 69.7 39.9 186 493-680 309-500 (656)
106 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 78.4 26.8 218 455-678 50-299 (320)
107 KOG1125 TPR repeat-containing 98.8 1.4E-06 2.9E-11 86.1 20.2 97 545-644 428-525 (579)
108 PF04733 Coatomer_E: Coatomer 98.7 8.2E-07 1.8E-11 84.7 18.5 127 549-680 133-264 (290)
109 KOG1125 TPR repeat-containing 98.7 1.3E-05 2.8E-10 79.4 26.1 259 58-327 283-562 (579)
110 KOG1070 rRNA processing protei 98.7 1.2E-05 2.6E-10 87.5 26.9 216 396-616 1447-1668(1710)
111 PLN02789 farnesyltranstransfer 98.7 2.4E-05 5.3E-10 75.8 26.7 204 420-629 50-267 (320)
112 KOG1070 rRNA processing protei 98.7 8.2E-06 1.8E-10 88.6 25.0 227 476-709 1457-1693(1710)
113 KOG1128 Uncharacterized conser 98.7 4.3E-06 9.4E-11 84.9 21.1 230 377-626 402-632 (777)
114 KOG1914 mRNA cleavage and poly 98.6 0.00072 1.6E-08 66.8 42.6 151 458-610 347-500 (656)
115 KOG1128 Uncharacterized conser 98.6 1.5E-05 3.3E-10 81.1 23.6 211 172-434 404-614 (777)
116 PRK10370 formate-dependent nit 98.6 1E-05 2.2E-10 72.8 20.6 161 519-696 23-186 (198)
117 PF12854 PPR_1: PPR repeat 98.6 6.5E-08 1.4E-12 57.8 4.0 32 197-228 2-33 (34)
118 PF12854 PPR_1: PPR repeat 98.6 7.1E-08 1.5E-12 57.6 4.1 32 267-298 2-33 (34)
119 TIGR03302 OM_YfiO outer membra 98.6 7E-06 1.5E-10 77.4 19.9 185 476-681 32-232 (235)
120 KOG2053 Mitochondrial inherita 98.6 0.002 4.2E-08 67.9 45.8 535 107-679 20-606 (932)
121 PRK14720 transcript cleavage f 98.5 5.6E-05 1.2E-09 81.8 26.1 234 376-663 34-268 (906)
122 TIGR03302 OM_YfiO outer membra 98.5 3.6E-05 7.8E-10 72.6 20.8 185 440-646 31-232 (235)
123 PRK10370 formate-dependent nit 98.5 4.6E-05 9.9E-10 68.7 20.3 119 490-611 52-173 (198)
124 PRK15179 Vi polysaccharide bio 98.4 8.7E-05 1.9E-09 79.7 25.4 180 509-698 83-266 (694)
125 PRK15359 type III secretion sy 98.4 1.6E-05 3.6E-10 67.5 15.5 101 585-689 27-127 (144)
126 COG5010 TadD Flp pilus assembl 98.4 6.7E-05 1.4E-09 67.2 19.5 157 516-677 70-227 (257)
127 COG5010 TadD Flp pilus assembl 98.4 8.5E-05 1.8E-09 66.5 19.9 158 446-607 70-227 (257)
128 KOG3081 Vesicle coat complex C 98.4 0.00057 1.2E-08 61.3 23.9 117 210-336 116-236 (299)
129 TIGR02552 LcrH_SycD type III s 98.3 1.7E-05 3.6E-10 67.3 14.2 122 569-695 5-126 (135)
130 PRK15179 Vi polysaccharide bio 98.3 7.4E-05 1.6E-09 80.2 21.7 148 92-244 82-229 (694)
131 COG4783 Putative Zn-dependent 98.3 0.00023 4.9E-09 69.6 22.6 139 521-681 315-454 (484)
132 PRK15359 type III secretion sy 98.3 2.8E-05 6.1E-10 66.1 14.9 106 550-658 27-132 (144)
133 PRK14720 transcript cleavage f 98.3 0.0005 1.1E-08 74.7 27.1 151 308-488 117-268 (906)
134 KOG3081 Vesicle coat complex C 98.3 0.00036 7.8E-09 62.5 21.2 88 383-473 147-238 (299)
135 KOG3060 Uncharacterized conser 98.2 0.00083 1.8E-08 59.8 21.7 163 377-542 56-221 (289)
136 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0065 1.4E-07 58.9 33.0 150 546-701 396-549 (660)
137 PF07079 DUF1347: Protein of u 98.2 0.0091 2E-07 58.1 39.4 142 68-214 14-179 (549)
138 KOG3060 Uncharacterized conser 98.1 0.0015 3.2E-08 58.3 21.6 189 453-646 23-220 (289)
139 COG4783 Putative Zn-dependent 98.1 0.00052 1.1E-08 67.2 20.6 124 554-681 313-437 (484)
140 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.6E-09 62.0 14.8 91 518-610 23-113 (135)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.5E-09 61.8 15.2 126 550-678 15-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00015 3.3E-09 71.8 15.4 124 551-680 173-296 (395)
143 TIGR00756 PPR pentatricopeptid 98.0 9.1E-06 2E-10 49.6 4.3 34 654-687 2-35 (35)
144 TIGR00756 PPR pentatricopeptid 97.9 1.6E-05 3.4E-10 48.5 4.3 33 204-236 2-34 (35)
145 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.4E-10 47.6 4.1 33 203-235 2-34 (34)
146 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.8E-10 47.4 4.1 33 653-685 2-34 (34)
147 PF09976 TPR_21: Tetratricopep 97.9 0.0009 1.9E-08 57.2 15.4 125 98-227 14-143 (145)
148 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00065 1.4E-08 67.4 16.0 124 480-609 172-295 (395)
149 KOG2041 WD40 repeat protein [G 97.8 0.044 9.5E-07 56.3 27.2 122 128-262 689-821 (1189)
150 PF05843 Suf: Suppressor of fo 97.8 0.00048 1E-08 66.1 13.3 144 549-697 3-150 (280)
151 PF10037 MRP-S27: Mitochondria 97.7 0.00052 1.1E-08 68.3 13.0 124 472-595 61-186 (429)
152 cd00189 TPR Tetratricopeptide 97.7 0.00059 1.3E-08 53.4 11.4 94 585-680 3-96 (100)
153 KOG0550 Molecular chaperone (D 97.7 0.0037 8E-08 59.9 17.6 89 556-646 258-350 (486)
154 KOG0553 TPR repeat-containing 97.7 0.00036 7.9E-09 63.9 10.5 96 556-656 90-186 (304)
155 COG3898 Uncharacterized membra 97.7 0.052 1.1E-06 51.9 28.9 289 386-688 97-399 (531)
156 PF08579 RPM2: Mitochondrial r 97.7 0.00064 1.4E-08 52.3 10.0 68 181-248 39-115 (120)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.3E-08 53.7 13.7 98 584-681 4-105 (119)
158 PF10037 MRP-S27: Mitochondria 97.7 0.00067 1.4E-08 67.5 13.1 122 199-320 63-186 (429)
159 PLN03088 SGT1, suppressor of 97.7 0.00089 1.9E-08 66.8 14.1 87 557-646 12-99 (356)
160 PF08579 RPM2: Mitochondrial r 97.6 0.00073 1.6E-08 52.0 9.7 75 244-318 32-115 (120)
161 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0016 3.5E-08 53.5 13.2 96 551-646 6-105 (119)
162 PF14938 SNAP: Soluble NSF att 97.6 0.0086 1.9E-07 57.9 19.8 55 555-610 122-183 (282)
163 PF12895 Apc3: Anaphase-promot 97.6 8.7E-05 1.9E-09 56.4 4.8 81 595-677 2-83 (84)
164 PF01535 PPR: PPR repeat; Int 97.6 7E-05 1.5E-09 44.0 3.4 30 654-683 2-31 (31)
165 PF14938 SNAP: Soluble NSF att 97.6 0.0047 1E-07 59.7 17.4 25 551-575 159-183 (282)
166 KOG0553 TPR repeat-containing 97.6 0.0023 4.9E-08 58.9 13.5 102 520-625 89-190 (304)
167 COG4700 Uncharacterized protei 97.6 0.032 6.9E-07 47.4 19.0 126 94-222 87-213 (251)
168 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 43.1 3.5 28 274-301 2-29 (31)
169 PRK15363 pathogenicity island 97.5 0.0054 1.2E-07 51.3 14.3 92 553-646 41-132 (157)
170 cd00189 TPR Tetratricopeptide 97.5 0.0018 3.9E-08 50.5 11.6 17 590-606 76-92 (100)
171 KOG1130 Predicted G-alpha GTPa 97.5 0.00093 2E-08 63.6 10.5 132 549-680 197-343 (639)
172 PRK02603 photosystem I assembl 97.5 0.0036 7.8E-08 55.4 13.8 87 549-637 37-126 (172)
173 COG4235 Cytochrome c biogenesi 97.5 0.0063 1.4E-07 56.5 15.3 126 567-697 142-270 (287)
174 PF12895 Apc3: Anaphase-promot 97.5 0.00022 4.8E-09 54.1 5.1 82 73-156 2-83 (84)
175 PLN03088 SGT1, suppressor of 97.5 0.0036 7.9E-08 62.5 14.9 92 484-577 9-100 (356)
176 PRK15363 pathogenicity island 97.5 0.0034 7.3E-08 52.5 12.1 95 584-681 37-132 (157)
177 PF12688 TPR_5: Tetratrico pep 97.4 0.0057 1.2E-07 49.3 13.0 90 589-679 8-102 (120)
178 PRK10153 DNA-binding transcrip 97.4 0.0094 2E-07 62.3 17.9 70 616-689 419-488 (517)
179 KOG2041 WD40 repeat protein [G 97.4 0.21 4.6E-06 51.6 26.3 203 163-399 689-904 (1189)
180 PF05843 Suf: Suppressor of fo 97.4 0.0028 6.1E-08 60.9 13.0 128 479-610 3-135 (280)
181 PRK02603 photosystem I assembl 97.4 0.0094 2E-07 52.7 15.4 61 480-540 38-100 (172)
182 COG4700 Uncharacterized protei 97.4 0.067 1.5E-06 45.6 19.7 124 511-638 88-214 (251)
183 PRK10866 outer membrane biogen 97.4 0.045 9.7E-07 51.2 20.3 62 98-160 34-98 (243)
184 PF13432 TPR_16: Tetratricopep 97.4 0.00063 1.4E-08 48.5 6.2 61 623-686 3-63 (65)
185 PF06239 ECSIT: Evolutionarily 97.4 0.0022 4.8E-08 56.2 10.3 114 80-216 34-152 (228)
186 PRK10866 outer membrane biogen 97.3 0.052 1.1E-06 50.8 20.2 176 483-679 38-239 (243)
187 PF06239 ECSIT: Evolutionarily 97.3 0.0053 1.2E-07 53.9 12.3 105 199-322 44-153 (228)
188 CHL00033 ycf3 photosystem I as 97.3 0.0048 1E-07 54.4 12.5 63 514-576 37-101 (168)
189 KOG2796 Uncharacterized conser 97.3 0.036 7.8E-07 49.9 17.3 138 551-691 181-323 (366)
190 PF07079 DUF1347: Protein of u 97.3 0.2 4.4E-06 49.2 44.6 138 105-248 15-178 (549)
191 PF04840 Vps16_C: Vps16, C-ter 97.3 0.19 4.2E-06 48.9 29.9 132 549-706 179-310 (319)
192 PF14559 TPR_19: Tetratricopep 97.3 0.00062 1.4E-08 49.2 5.5 62 629-693 3-64 (68)
193 KOG2114 Vacuolar assembly/sort 97.2 0.32 7E-06 51.7 25.8 182 96-299 334-517 (933)
194 KOG2280 Vacuolar assembly/sort 97.2 0.4 8.8E-06 50.3 26.5 131 61-195 438-574 (829)
195 PRK10153 DNA-binding transcrip 97.2 0.029 6.4E-07 58.7 18.3 133 474-610 334-481 (517)
196 CHL00033 ycf3 photosystem I as 97.2 0.011 2.3E-07 52.2 13.0 94 583-677 36-138 (168)
197 PF14559 TPR_19: Tetratricopep 97.1 0.0023 5E-08 46.1 7.1 53 107-160 2-54 (68)
198 KOG0550 Molecular chaperone (D 97.1 0.17 3.7E-06 49.1 20.6 89 487-576 259-350 (486)
199 PF13414 TPR_11: TPR repeat; P 97.1 0.0016 3.4E-08 47.2 6.0 64 616-680 2-66 (69)
200 PF04840 Vps16_C: Vps16, C-ter 97.1 0.32 7E-06 47.4 29.2 107 274-396 179-285 (319)
201 COG4235 Cytochrome c biogenesi 97.1 0.036 7.7E-07 51.6 15.4 101 509-611 153-256 (287)
202 PF13525 YfiO: Outer membrane 97.0 0.087 1.9E-06 47.9 18.1 63 98-160 7-71 (203)
203 KOG2796 Uncharacterized conser 97.0 0.02 4.4E-07 51.5 13.1 138 274-437 179-316 (366)
204 KOG1538 Uncharacterized conser 97.0 0.057 1.2E-06 55.1 17.7 54 443-505 748-801 (1081)
205 PRK10803 tol-pal system protei 97.0 0.0085 1.8E-07 56.4 11.6 101 584-688 145-251 (263)
206 KOG1130 Predicted G-alpha GTPa 97.0 0.0093 2E-07 57.1 11.1 133 443-575 196-343 (639)
207 PF13432 TPR_16: Tetratricopep 96.9 0.0035 7.6E-08 44.7 6.5 51 558-609 8-58 (65)
208 PF13525 YfiO: Outer membrane 96.9 0.13 2.8E-06 46.8 17.9 48 623-671 147-197 (203)
209 PF13371 TPR_9: Tetratricopept 96.9 0.0055 1.2E-07 44.9 7.4 64 625-691 3-66 (73)
210 PF13414 TPR_11: TPR repeat; P 96.9 0.0046 1E-07 44.7 6.8 21 555-575 11-31 (69)
211 PF13281 DUF4071: Domain of un 96.9 0.18 4E-06 49.5 19.4 28 654-681 307-334 (374)
212 PF12688 TPR_5: Tetratrico pep 96.8 0.055 1.2E-06 43.7 13.2 57 103-159 8-66 (120)
213 KOG1538 Uncharacterized conser 96.7 0.62 1.3E-05 48.0 22.1 128 279-436 710-846 (1081)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.88 1.9E-05 44.8 38.2 130 443-576 398-531 (660)
215 PRK10803 tol-pal system protei 96.5 0.063 1.4E-06 50.6 13.4 89 558-646 154-246 (263)
216 PF13424 TPR_12: Tetratricopep 96.5 0.006 1.3E-07 45.4 5.3 61 619-679 7-73 (78)
217 KOG1941 Acetylcholine receptor 96.4 0.12 2.5E-06 49.1 13.6 125 553-677 128-271 (518)
218 KOG2280 Vacuolar assembly/sort 96.3 1.9 4.2E-05 45.6 32.9 111 546-675 683-793 (829)
219 PF03704 BTAD: Bacterial trans 96.3 0.041 8.9E-07 47.1 9.9 54 103-157 69-122 (146)
220 KOG2114 Vacuolar assembly/sort 96.3 2.1 4.6E-05 45.9 24.5 177 132-333 335-516 (933)
221 PRK15331 chaperone protein Sic 96.3 0.17 3.7E-06 42.9 12.8 86 593-680 48-133 (165)
222 PF13371 TPR_9: Tetratricopept 96.2 0.027 6E-07 41.1 7.4 56 104-160 3-58 (73)
223 PF03704 BTAD: Bacterial trans 96.1 0.041 8.9E-07 47.1 8.9 67 552-619 67-138 (146)
224 PF13281 DUF4071: Domain of un 96.0 1.9 4.1E-05 42.7 21.3 30 581-610 304-333 (374)
225 PF12921 ATP13: Mitochondrial 95.9 0.12 2.6E-06 42.3 10.1 53 612-664 47-100 (126)
226 PF12921 ATP13: Mitochondrial 95.9 0.11 2.4E-06 42.5 9.9 52 267-318 47-99 (126)
227 PF08631 SPO22: Meiosis protei 95.9 1.8 3.9E-05 41.7 24.3 164 513-679 85-273 (278)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.12 2.7E-06 51.4 11.9 66 546-611 74-141 (453)
229 PF13424 TPR_12: Tetratricopep 95.8 0.02 4.3E-07 42.6 5.2 61 584-644 7-73 (78)
230 PF10300 DUF3808: Protein of u 95.8 0.54 1.2E-05 49.0 17.2 83 562-646 248-334 (468)
231 PRK15331 chaperone protein Sic 95.8 0.11 2.4E-06 43.9 9.8 88 557-646 47-134 (165)
232 COG3898 Uncharacterized membra 95.8 2 4.3E-05 41.7 31.1 221 384-615 165-396 (531)
233 COG4105 ComL DNA uptake lipopr 95.7 1.6 3.6E-05 40.0 18.0 53 384-436 45-100 (254)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.099 2.2E-06 52.0 10.2 97 581-683 74-176 (453)
235 COG3118 Thioredoxin domain-con 95.5 1.7 3.6E-05 40.8 16.8 146 103-252 141-287 (304)
236 smart00299 CLH Clathrin heavy 95.4 1.2 2.6E-05 37.6 15.3 124 171-318 12-136 (140)
237 COG1729 Uncharacterized protei 95.4 0.24 5.2E-06 45.7 11.2 88 594-681 153-244 (262)
238 KOG1585 Protein required for f 95.4 2 4.3E-05 38.9 18.0 208 95-330 30-250 (308)
239 KOG4555 TPR repeat-containing 95.4 0.29 6.4E-06 39.0 9.9 91 591-682 52-145 (175)
240 COG0457 NrfG FOG: TPR repeat [ 95.4 2.4 5.2E-05 39.6 29.9 223 456-681 37-265 (291)
241 PF09205 DUF1955: Domain of un 95.3 1.1 2.4E-05 36.1 12.8 65 618-683 87-151 (161)
242 smart00299 CLH Clathrin heavy 95.0 1.7 3.6E-05 36.8 14.8 132 58-213 5-136 (140)
243 KOG1585 Protein required for f 95.0 1.9 4.1E-05 39.0 14.9 205 445-676 34-251 (308)
244 COG1729 Uncharacterized protei 95.0 0.37 8E-06 44.5 11.1 97 98-196 144-244 (262)
245 KOG1258 mRNA processing protei 94.9 5.4 0.00012 41.4 34.9 187 476-666 296-489 (577)
246 KOG0543 FKBP-type peptidyl-pro 94.9 0.57 1.2E-05 45.8 12.6 93 67-160 215-320 (397)
247 KOG0543 FKBP-type peptidyl-pro 94.9 0.55 1.2E-05 45.9 12.5 60 550-610 260-319 (397)
248 PF10300 DUF3808: Protein of u 94.9 1.8 3.8E-05 45.3 17.3 26 66-91 194-219 (468)
249 PF04053 Coatomer_WDAD: Coatom 94.9 0.59 1.3E-05 48.0 13.5 56 236-300 346-401 (443)
250 KOG1920 IkappaB kinase complex 94.8 8 0.00017 43.6 22.1 360 135-537 681-1051(1265)
251 PF04184 ST7: ST7 protein; In 94.8 2.4 5.2E-05 42.9 16.8 58 588-645 265-323 (539)
252 KOG2610 Uncharacterized conser 94.8 2.8 6E-05 39.8 16.0 153 419-574 115-274 (491)
253 PF13512 TPR_18: Tetratricopep 94.7 1.1 2.3E-05 37.2 11.9 54 558-611 21-76 (142)
254 PF09205 DUF1955: Domain of un 94.7 1.9 4.1E-05 34.8 13.9 66 582-648 86-151 (161)
255 KOG3941 Intermediate in Toll s 94.7 0.21 4.5E-06 45.7 8.5 108 579-705 64-176 (406)
256 COG4649 Uncharacterized protei 94.6 2.4 5.2E-05 36.1 13.8 139 95-235 58-200 (221)
257 PF04097 Nic96: Nup93/Nic96; 94.6 6 0.00013 43.0 21.0 90 412-506 263-356 (613)
258 KOG3941 Intermediate in Toll s 94.5 0.26 5.6E-06 45.2 8.8 32 220-251 141-172 (406)
259 PF08631 SPO22: Meiosis protei 94.5 4.9 0.00011 38.7 28.4 101 444-546 86-191 (278)
260 COG0457 NrfG FOG: TPR repeat [ 94.5 4.1 9E-05 37.9 26.8 202 442-646 59-265 (291)
261 COG4649 Uncharacterized protei 94.4 2.8 6.1E-05 35.7 13.8 141 128-270 56-200 (221)
262 PF04053 Coatomer_WDAD: Coatom 94.4 0.92 2E-05 46.5 13.6 134 67-230 268-401 (443)
263 KOG1258 mRNA processing protei 94.4 7.4 0.00016 40.4 36.1 117 113-231 62-180 (577)
264 COG4105 ComL DNA uptake lipopr 94.3 4.2 9.2E-05 37.4 20.7 55 106-160 44-100 (254)
265 KOG1920 IkappaB kinase complex 94.3 7.7 0.00017 43.8 20.5 80 555-646 947-1028(1265)
266 PRK11906 transcriptional regul 94.3 3.1 6.6E-05 42.0 16.3 80 564-646 321-401 (458)
267 KOG2610 Uncharacterized conser 94.2 1.2 2.7E-05 42.0 12.5 188 488-678 114-312 (491)
268 KOG2396 HAT (Half-A-TPR) repea 94.2 7.3 0.00016 39.5 40.3 100 544-646 456-559 (568)
269 PF13512 TPR_18: Tetratricopep 94.1 1.8 3.9E-05 35.9 12.0 84 96-179 10-95 (142)
270 KOG1941 Acetylcholine receptor 94.1 3 6.6E-05 40.1 14.8 125 518-643 128-272 (518)
271 PF04184 ST7: ST7 protein; In 94.0 2 4.3E-05 43.4 14.2 162 526-702 182-346 (539)
272 PF13428 TPR_14: Tetratricopep 93.9 0.13 2.8E-06 32.8 4.3 26 655-680 4-29 (44)
273 PRK11906 transcriptional regul 93.9 3 6.5E-05 42.1 15.4 110 596-709 318-430 (458)
274 KOG4555 TPR repeat-containing 93.9 0.75 1.6E-05 36.8 8.9 90 556-647 52-145 (175)
275 COG3629 DnrI DNA-binding trans 93.7 0.71 1.5E-05 43.4 10.2 78 619-697 155-237 (280)
276 COG3118 Thioredoxin domain-con 93.6 6.5 0.00014 37.0 17.2 51 271-321 235-286 (304)
277 PF13176 TPR_7: Tetratricopept 93.6 0.16 3.4E-06 30.7 3.9 27 654-680 1-27 (36)
278 PF13170 DUF4003: Protein of u 93.5 7.3 0.00016 37.7 17.1 85 424-510 79-176 (297)
279 PF10345 Cohesin_load: Cohesin 93.5 14 0.0003 40.4 38.1 149 78-228 39-205 (608)
280 PF13428 TPR_14: Tetratricopep 93.4 0.28 6.1E-06 31.3 5.1 36 99-135 4-39 (44)
281 PF07035 Mic1: Colon cancer-as 93.1 5.3 0.00012 34.4 14.8 134 117-265 15-148 (167)
282 PF02259 FAT: FAT domain; Int 93.0 10 0.00022 38.2 18.8 66 615-680 144-212 (352)
283 COG3629 DnrI DNA-binding trans 93.0 1.2 2.6E-05 41.9 10.5 77 549-626 155-236 (280)
284 KOG1550 Extracellular protein 92.8 16 0.00036 39.3 23.0 273 389-681 228-538 (552)
285 PF13431 TPR_17: Tetratricopep 92.7 0.13 2.8E-06 30.6 2.6 32 640-672 2-33 (34)
286 COG1747 Uncharacterized N-term 92.7 13 0.00028 37.8 22.8 95 476-575 65-159 (711)
287 PRK11619 lytic murein transgly 91.9 22 0.00048 38.9 37.2 85 89-179 92-176 (644)
288 PF00515 TPR_1: Tetratricopept 91.9 0.39 8.5E-06 28.4 4.1 32 653-686 2-33 (34)
289 PF07035 Mic1: Colon cancer-as 91.8 7.8 0.00017 33.4 15.8 129 188-331 15-144 (167)
290 PF13170 DUF4003: Protein of u 91.6 14 0.0003 35.8 19.9 26 634-659 199-224 (297)
291 PF09613 HrpB1_HrpK: Bacterial 91.4 8.2 0.00018 32.9 13.8 69 108-179 22-90 (160)
292 PF07719 TPR_2: Tetratricopept 91.3 0.45 9.8E-06 28.0 4.0 28 653-680 2-29 (34)
293 COG2909 MalT ATP-dependent tra 91.2 27 0.00058 38.5 24.2 225 418-642 426-684 (894)
294 COG4785 NlpI Lipoprotein NlpI, 91.1 11 0.00023 33.7 17.5 99 58-159 56-161 (297)
295 PF09613 HrpB1_HrpK: Bacterial 91.1 8.9 0.00019 32.6 13.1 53 453-506 21-73 (160)
296 PF13176 TPR_7: Tetratricopept 90.8 0.57 1.2E-05 28.2 4.1 25 585-609 2-26 (36)
297 KOG4570 Uncharacterized conser 89.5 4.6 0.0001 38.1 10.3 103 507-611 59-164 (418)
298 PF00637 Clathrin: Region in C 89.5 0.011 2.5E-07 50.3 -6.0 52 174-226 15-66 (143)
299 PF10602 RPN7: 26S proteasome 89.4 3.8 8.2E-05 36.1 9.6 60 550-609 39-100 (177)
300 PF10602 RPN7: 26S proteasome 89.4 2.9 6.2E-05 36.9 8.9 97 583-679 37-140 (177)
301 KOG1550 Extracellular protein 89.0 37 0.0008 36.6 26.6 248 385-646 261-538 (552)
302 KOG4570 Uncharacterized conser 88.9 6.4 0.00014 37.2 10.8 97 406-506 63-164 (418)
303 KOG1464 COP9 signalosome, subu 88.9 19 0.00041 33.3 18.8 82 420-501 40-129 (440)
304 PRK09687 putative lyase; Provi 88.8 23 0.0005 34.1 28.3 235 439-698 34-278 (280)
305 PF13431 TPR_17: Tetratricopep 88.5 0.64 1.4E-05 27.6 2.9 21 581-601 12-32 (34)
306 PF04097 Nic96: Nup93/Nic96; 88.4 43 0.00093 36.6 25.0 89 208-301 264-356 (613)
307 KOG1464 COP9 signalosome, subu 88.2 22 0.00047 33.0 20.7 263 386-657 40-342 (440)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 87.9 4 8.7E-05 30.9 7.2 47 600-646 25-71 (103)
309 PF00515 TPR_1: Tetratricopept 87.7 1.4 3E-05 25.9 4.2 27 584-610 3-29 (34)
310 PF00637 Clathrin: Region in C 87.2 0.2 4.4E-06 42.6 0.3 52 590-641 15-66 (143)
311 KOG2062 26S proteasome regulat 87.2 47 0.001 35.8 35.8 122 556-680 510-634 (929)
312 PF13374 TPR_10: Tetratricopep 87.1 1.4 3.1E-05 27.4 4.2 29 652-680 2-30 (42)
313 PF02284 COX5A: Cytochrome c o 86.9 3.3 7.2E-05 31.7 6.4 47 600-646 28-74 (108)
314 KOG4648 Uncharacterized conser 86.8 2.6 5.7E-05 40.0 7.2 51 592-644 107-158 (536)
315 COG4455 ImpE Protein of avirul 86.7 3.9 8.5E-05 36.4 7.7 78 584-662 3-82 (273)
316 COG2909 MalT ATP-dependent tra 86.6 57 0.0012 36.2 29.8 197 139-338 423-649 (894)
317 PF13181 TPR_8: Tetratricopept 86.6 1.1 2.4E-05 26.4 3.2 27 654-680 3-29 (34)
318 COG2976 Uncharacterized protei 86.5 22 0.00049 31.3 13.9 113 565-682 70-189 (207)
319 TIGR03504 FimV_Cterm FimV C-te 85.9 1.6 3.5E-05 27.6 3.8 26 657-682 4-29 (44)
320 PF06552 TOM20_plant: Plant sp 85.7 8.8 0.00019 33.3 9.1 64 613-684 64-139 (186)
321 KOG2066 Vacuolar assembly/sort 85.6 59 0.0013 35.4 24.1 53 280-334 364-419 (846)
322 COG3947 Response regulator con 85.6 33 0.00071 32.4 15.4 69 620-689 282-355 (361)
323 PF07163 Pex26: Pex26 protein; 84.9 34 0.00075 32.1 14.2 96 64-159 39-146 (309)
324 PF07719 TPR_2: Tetratricopept 84.9 2.3 5.1E-05 24.8 4.2 25 586-610 5-29 (34)
325 PF11207 DUF2989: Protein of u 84.8 13 0.00028 33.1 9.9 73 599-672 123-198 (203)
326 COG4785 NlpI Lipoprotein NlpI, 84.7 30 0.00064 31.1 17.1 84 387-471 79-162 (297)
327 PRK15180 Vi polysaccharide bio 84.6 37 0.0008 34.4 13.9 53 489-542 335-387 (831)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 84.6 6.6 0.00014 29.8 6.9 65 632-697 22-86 (103)
329 KOG0276 Vesicle coat complex C 84.6 13 0.00028 38.7 11.1 97 214-331 649-745 (794)
330 KOG0276 Vesicle coat complex C 84.5 23 0.00051 36.9 12.9 150 489-678 598-747 (794)
331 COG3947 Response regulator con 83.3 42 0.0009 31.8 16.3 70 550-620 282-356 (361)
332 COG1747 Uncharacterized N-term 83.3 59 0.0013 33.5 26.0 92 270-366 64-155 (711)
333 PF13174 TPR_6: Tetratricopept 83.2 1.5 3.2E-05 25.4 2.7 27 655-681 3-29 (33)
334 PF10345 Cohesin_load: Cohesin 82.7 81 0.0017 34.7 42.6 21 625-645 585-605 (608)
335 PF02284 COX5A: Cytochrome c o 82.5 7.7 0.00017 29.8 6.6 63 634-697 27-89 (108)
336 KOG4234 TPR repeat-containing 82.3 10 0.00022 33.4 8.1 90 555-646 103-197 (271)
337 TIGR02561 HrpB1_HrpK type III 82.0 29 0.00064 29.1 11.7 50 109-159 23-72 (153)
338 KOG4234 TPR repeat-containing 81.9 23 0.00049 31.3 10.0 20 487-506 105-124 (271)
339 PF07721 TPR_4: Tetratricopept 81.7 2.2 4.7E-05 23.3 2.8 22 655-676 4-25 (26)
340 TIGR02561 HrpB1_HrpK type III 81.4 31 0.00067 29.0 11.0 50 455-506 23-73 (153)
341 KOG0890 Protein kinase of the 81.3 1.6E+02 0.0034 37.1 33.6 149 278-466 1389-1542(2382)
342 KOG1586 Protein required for f 81.3 43 0.00093 30.6 19.1 86 561-646 128-224 (288)
343 KOG2063 Vacuolar assembly/sort 81.3 84 0.0018 35.4 16.6 143 63-214 478-638 (877)
344 PF08424 NRDE-2: NRDE-2, neces 80.6 63 0.0014 32.0 17.3 137 509-647 16-184 (321)
345 PF13374 TPR_10: Tetratricopep 80.6 4.3 9.3E-05 25.1 4.4 28 203-230 3-30 (42)
346 PF13929 mRNA_stabil: mRNA sta 80.2 55 0.0012 31.1 22.3 115 492-606 143-262 (292)
347 PF14853 Fis1_TPR_C: Fis1 C-te 80.2 6.4 0.00014 26.2 5.0 41 655-697 4-44 (53)
348 COG5159 RPN6 26S proteasome re 79.8 34 0.00073 32.1 11.0 33 657-689 130-166 (421)
349 PF06552 TOM20_plant: Plant sp 79.1 24 0.00052 30.7 9.3 28 598-627 96-123 (186)
350 COG4455 ImpE Protein of avirul 78.6 12 0.00026 33.5 7.5 75 100-175 5-81 (273)
351 KOG2396 HAT (Half-A-TPR) repea 78.2 87 0.0019 32.3 39.7 100 578-680 455-558 (568)
352 PRK11619 lytic murein transgly 76.6 1.3E+02 0.0027 33.3 37.8 466 165-687 33-511 (644)
353 KOG3364 Membrane protein invol 75.8 44 0.00094 27.6 10.2 74 614-689 29-106 (149)
354 TIGR03504 FimV_Cterm FimV C-te 75.4 8.1 0.00017 24.6 4.2 23 137-159 5-27 (44)
355 PF09986 DUF2225: Uncharacteri 75.3 53 0.0011 30.1 11.2 89 595-683 90-196 (214)
356 KOG4648 Uncharacterized conser 74.7 20 0.00043 34.5 8.3 90 484-576 104-194 (536)
357 PF13929 mRNA_stabil: mRNA sta 74.5 82 0.0018 30.0 17.2 63 233-295 198-261 (292)
358 PF13181 TPR_8: Tetratricopept 74.2 9.3 0.0002 22.2 4.3 27 584-610 3-29 (34)
359 PF11207 DUF2989: Protein of u 73.5 68 0.0015 28.7 14.4 75 182-257 121-198 (203)
360 PHA02875 ankyrin repeat protei 73.4 1.2E+02 0.0025 31.4 18.3 7 195-201 23-29 (413)
361 PRK09687 putative lyase; Provi 72.6 94 0.002 30.0 27.2 60 271-334 141-201 (280)
362 KOG2471 TPR repeat-containing 71.3 1.3E+02 0.0028 31.0 16.2 36 522-558 345-380 (696)
363 cd00280 TRFH Telomeric Repeat 71.2 72 0.0016 28.0 10.4 40 50-89 4-45 (200)
364 PF08424 NRDE-2: NRDE-2, neces 70.9 1.1E+02 0.0025 30.2 18.6 98 476-575 18-130 (321)
365 KOG2063 Vacuolar assembly/sort 70.1 2E+02 0.0043 32.7 17.8 116 133-249 506-638 (877)
366 PF02259 FAT: FAT domain; Int 69.7 1.3E+02 0.0027 30.2 23.0 66 200-265 144-212 (352)
367 PF13174 TPR_6: Tetratricopept 69.0 8.7 0.00019 22.0 3.3 26 134-159 3-28 (33)
368 smart00028 TPR Tetratricopepti 68.8 9.6 0.00021 21.1 3.6 27 654-680 3-29 (34)
369 PF13762 MNE1: Mitochondrial s 68.5 71 0.0015 26.9 10.7 81 169-250 42-128 (145)
370 PF11663 Toxin_YhaV: Toxin wit 68.3 5.6 0.00012 32.4 2.9 35 661-697 104-138 (140)
371 PF14669 Asp_Glu_race_2: Putat 68.1 86 0.0019 27.7 15.6 25 447-471 137-161 (233)
372 KOG4077 Cytochrome c oxidase, 67.3 39 0.00085 27.3 7.2 46 601-646 68-113 (149)
373 COG0790 FOG: TPR repeat, SEL1 66.5 1.3E+02 0.0028 29.2 24.3 86 599-691 172-276 (292)
374 KOG2908 26S proteasome regulat 65.8 65 0.0014 31.2 9.6 57 554-610 82-143 (380)
375 KOG0376 Serine-threonine phosp 65.2 14 0.00029 37.5 5.5 113 590-707 12-125 (476)
376 PF10366 Vps39_1: Vacuolar sor 64.7 70 0.0015 25.4 8.6 27 409-435 41-67 (108)
377 TIGR02508 type_III_yscG type I 64.4 65 0.0014 24.9 8.1 57 626-689 48-104 (115)
378 PF07163 Pex26: Pex26 protein; 64.1 1.3E+02 0.0029 28.4 13.1 92 133-225 85-181 (309)
379 PF07575 Nucleopor_Nup85: Nup8 64.1 2.2E+02 0.0048 31.0 19.8 35 664-698 507-541 (566)
380 COG2976 Uncharacterized protei 64.1 1.1E+02 0.0023 27.3 18.6 87 210-301 97-188 (207)
381 KOG4077 Cytochrome c oxidase, 62.8 46 0.001 26.9 6.8 61 635-696 67-127 (149)
382 PF11848 DUF3368: Domain of un 62.0 29 0.00064 22.5 4.9 36 661-696 11-46 (48)
383 KOG2471 TPR repeat-containing 62.0 2E+02 0.0043 29.7 14.8 105 522-628 250-380 (696)
384 KOG4642 Chaperone-dependent E3 61.4 73 0.0016 29.3 8.7 120 556-679 19-144 (284)
385 PF10579 Rapsyn_N: Rapsyn N-te 60.0 20 0.00043 26.2 4.1 47 72-118 18-65 (80)
386 COG0790 FOG: TPR repeat, SEL1 59.9 1.7E+02 0.0037 28.3 23.2 46 565-613 173-222 (292)
387 PF11846 DUF3366: Domain of un 58.9 43 0.00094 30.1 7.4 32 649-680 141-172 (193)
388 PF14689 SPOB_a: Sensor_kinase 58.4 24 0.00051 24.6 4.3 28 652-679 23-50 (62)
389 PF13934 ELYS: Nuclear pore co 57.5 1.6E+02 0.0035 27.3 10.8 96 72-179 90-185 (226)
390 KOG0687 26S proteasome regulat 57.4 1.9E+02 0.0042 28.1 14.6 135 92-230 66-209 (393)
391 PF13762 MNE1: Mitochondrial s 57.2 1.2E+02 0.0026 25.6 10.6 80 205-284 42-127 (145)
392 KOG4507 Uncharacterized conser 56.5 75 0.0016 33.3 8.9 100 96-197 212-313 (886)
393 PF10579 Rapsyn_N: Rapsyn N-te 55.9 22 0.00047 26.0 3.7 46 629-674 18-65 (80)
394 PF12862 Apc5: Anaphase-promot 55.7 56 0.0012 25.1 6.5 24 657-680 46-69 (94)
395 PRK10941 hypothetical protein; 55.2 1.2E+02 0.0027 28.9 9.8 76 622-698 186-262 (269)
396 cd08819 CARD_MDA5_2 Caspase ac 54.7 90 0.002 23.5 6.8 10 328-337 23-32 (88)
397 PF11846 DUF3366: Domain of un 54.6 50 0.0011 29.7 7.0 33 128-160 141-173 (193)
398 PHA02875 ankyrin repeat protei 53.9 2.7E+02 0.0058 28.7 18.3 75 213-295 10-88 (413)
399 COG4259 Uncharacterized protei 53.4 90 0.0019 24.0 6.6 61 634-696 54-114 (121)
400 cd08819 CARD_MDA5_2 Caspase ac 51.8 1E+02 0.0022 23.2 7.3 15 595-609 49-63 (88)
401 KOG4507 Uncharacterized conser 51.5 67 0.0014 33.7 7.7 99 560-660 620-718 (886)
402 PF09670 Cas_Cas02710: CRISPR- 51.5 2.2E+02 0.0047 29.0 11.6 56 520-576 139-198 (379)
403 cd00280 TRFH Telomeric Repeat 51.3 94 0.002 27.3 7.4 14 598-611 85-98 (200)
404 PF12862 Apc5: Anaphase-promot 51.0 1E+02 0.0023 23.6 7.3 23 624-646 48-70 (94)
405 PF04910 Tcf25: Transcriptiona 51.0 2.8E+02 0.006 28.0 21.2 117 72-194 22-166 (360)
406 TIGR02508 type_III_yscG type I 50.9 1.2E+02 0.0025 23.6 8.5 86 75-169 20-105 (115)
407 PRK13342 recombination factor 50.7 3E+02 0.0066 28.4 19.3 23 251-273 244-266 (413)
408 PF14689 SPOB_a: Sensor_kinase 50.1 48 0.001 23.0 4.7 22 517-538 28-49 (62)
409 PF11848 DUF3368: Domain of un 50.1 64 0.0014 21.0 5.0 25 216-240 16-40 (48)
410 smart00386 HAT HAT (Half-A-TPR 49.9 42 0.00091 18.8 4.0 13 633-645 3-15 (33)
411 COG5108 RPO41 Mitochondrial DN 49.4 80 0.0017 33.7 7.9 72 587-661 33-112 (1117)
412 KOG2066 Vacuolar assembly/sort 49.4 4.1E+02 0.0088 29.5 29.6 22 313-334 511-532 (846)
413 PF09670 Cas_Cas02710: CRISPR- 48.7 2.3E+02 0.005 28.8 11.2 57 103-160 138-198 (379)
414 PF11663 Toxin_YhaV: Toxin wit 47.8 20 0.00044 29.3 2.8 21 181-201 109-129 (140)
415 KOG2297 Predicted translation 47.0 2.7E+02 0.0059 26.8 17.8 67 216-292 269-341 (412)
416 KOG4642 Chaperone-dependent E3 46.4 2.5E+02 0.0053 26.1 11.2 99 74-176 24-127 (284)
417 KOG2297 Predicted translation 46.2 2.8E+02 0.0061 26.7 19.8 19 478-496 322-340 (412)
418 KOG0403 Neoplastic transformat 45.2 3.6E+02 0.0077 27.6 29.8 74 587-665 514-587 (645)
419 KOG0991 Replication factor C, 44.9 2.6E+02 0.0055 25.9 12.1 58 592-650 202-271 (333)
420 PF04910 Tcf25: Transcriptiona 44.8 3.4E+02 0.0075 27.3 17.4 57 554-610 110-167 (360)
421 KOG1308 Hsp70-interacting prot 44.6 17 0.00038 35.0 2.4 93 72-167 126-218 (377)
422 KOG2659 LisH motif-containing 44.5 2.4E+02 0.0052 25.9 9.3 98 198-297 22-128 (228)
423 PF10366 Vps39_1: Vacuolar sor 44.2 1.6E+02 0.0035 23.4 8.3 26 275-300 42-67 (108)
424 KOG3807 Predicted membrane pro 43.4 3.2E+02 0.0069 26.6 11.1 63 588-652 281-346 (556)
425 PF14853 Fis1_TPR_C: Fis1 C-te 43.4 99 0.0021 20.7 5.8 24 136-159 6-29 (53)
426 PF10475 DUF2450: Protein of u 43.0 2E+02 0.0044 27.9 9.6 51 173-230 105-155 (291)
427 KOG0890 Protein kinase of the 42.8 8.6E+02 0.019 31.4 37.2 158 60-226 1383-1542(2382)
428 KOG1308 Hsp70-interacting prot 42.8 21 0.00045 34.5 2.6 86 560-648 127-213 (377)
429 PRK10564 maltose regulon perip 42.7 49 0.0011 31.6 5.0 35 585-619 260-294 (303)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 42.3 1.9E+02 0.0042 23.7 9.4 43 635-677 81-124 (126)
431 COG0735 Fur Fe2+/Zn2+ uptake r 41.8 1.7E+02 0.0036 24.8 7.7 28 172-200 26-53 (145)
432 KOG4567 GTPase-activating prot 41.6 2.3E+02 0.005 27.3 8.9 57 567-628 263-319 (370)
433 KOG0128 RNA-binding protein SA 41.3 5.6E+02 0.012 28.7 32.0 64 165-230 112-178 (881)
434 KOG0376 Serine-threonine phosp 40.1 76 0.0016 32.5 6.1 104 484-592 11-115 (476)
435 PRK10564 maltose regulon perip 39.8 64 0.0014 30.9 5.2 30 655-684 260-289 (303)
436 PRK10941 hypothetical protein; 39.4 3.5E+02 0.0076 25.9 10.8 61 134-196 184-244 (269)
437 PF09477 Type_III_YscG: Bacter 39.4 1.9E+02 0.0042 22.8 9.0 80 74-161 20-99 (116)
438 PRK09857 putative transposase; 39.1 2.5E+02 0.0054 27.3 9.4 65 622-687 211-275 (292)
439 COG0735 Fur Fe2+/Zn2+ uptake r 38.7 1E+02 0.0022 26.1 6.0 43 411-453 24-66 (145)
440 KOG4567 GTPase-activating prot 38.6 1.6E+02 0.0036 28.3 7.5 57 427-488 263-319 (370)
441 PF04762 IKI3: IKI3 family; I 38.5 7.1E+02 0.015 29.2 16.2 28 514-541 814-843 (928)
442 KOG1114 Tripeptidyl peptidase 38.2 6.7E+02 0.014 28.7 15.6 40 627-666 1241-1281(1304)
443 PF04190 DUF410: Protein of un 38.1 3.6E+02 0.0078 25.7 18.4 27 475-501 88-114 (260)
444 KOG2422 Uncharacterized conser 37.5 5.4E+02 0.012 27.5 17.6 220 454-680 250-515 (665)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 37.2 2.3E+02 0.0051 23.2 9.4 43 600-642 81-124 (126)
446 KOG2034 Vacuolar sorting prote 36.8 6.7E+02 0.015 28.4 25.3 305 346-679 362-688 (911)
447 PF10475 DUF2450: Protein of u 36.4 3E+02 0.0064 26.8 9.6 23 650-672 195-217 (291)
448 COG5187 RPN7 26S proteasome re 36.1 4E+02 0.0086 25.5 11.8 144 534-679 60-219 (412)
449 KOG4279 Serine/threonine prote 36.0 5.8E+02 0.013 28.2 11.7 29 659-689 373-401 (1226)
450 KOG0687 26S proteasome regulat 35.5 4.4E+02 0.0094 25.8 15.8 97 513-611 105-210 (393)
451 PRK08691 DNA polymerase III su 35.4 5E+02 0.011 28.9 11.6 47 563-611 180-227 (709)
452 PRK13342 recombination factor 35.3 5.2E+02 0.011 26.7 18.9 21 596-616 244-264 (413)
453 KOG0686 COP9 signalosome, subu 35.3 4.9E+02 0.011 26.4 15.3 94 131-227 150-254 (466)
454 smart00777 Mad3_BUB1_I Mad3/BU 35.0 2.6E+02 0.0055 23.0 9.2 43 634-676 80-123 (125)
455 KOG0403 Neoplastic transformat 34.8 5.2E+02 0.011 26.5 28.6 62 620-682 512-573 (645)
456 PF15297 CKAP2_C: Cytoskeleton 34.5 2.4E+02 0.0053 27.8 8.2 63 634-698 120-186 (353)
457 PF02607 B12-binding_2: B12 bi 34.3 82 0.0018 23.0 4.3 39 664-702 13-51 (79)
458 PF15297 CKAP2_C: Cytoskeleton 34.3 4.4E+02 0.0095 26.1 9.8 64 563-628 119-186 (353)
459 PF14669 Asp_Glu_race_2: Putat 34.2 3.4E+02 0.0074 24.2 14.9 55 587-641 137-205 (233)
460 COG5159 RPN6 26S proteasome re 34.1 4.3E+02 0.0092 25.3 19.7 198 103-300 10-234 (421)
461 COG4976 Predicted methyltransf 33.8 1.1E+02 0.0024 27.9 5.5 52 628-680 6-57 (287)
462 PF02184 HAT: HAT (Half-A-TPR) 33.7 1E+02 0.0022 18.1 3.4 12 599-610 4-15 (32)
463 KOG0991 Replication factor C, 32.5 4.1E+02 0.0089 24.6 13.6 68 558-627 203-282 (333)
464 PF00244 14-3-3: 14-3-3 protei 32.5 4.2E+02 0.0091 24.8 11.5 18 629-646 181-198 (236)
465 PF03745 DUF309: Domain of unk 32.5 1.7E+02 0.0038 20.3 6.0 17 107-123 10-26 (62)
466 KOG1586 Protein required for f 31.7 4.3E+02 0.0092 24.6 21.8 96 354-474 85-186 (288)
467 KOG0551 Hsp90 co-chaperone CNS 31.5 5.1E+02 0.011 25.5 9.6 93 549-643 83-179 (390)
468 PRK14956 DNA polymerase III su 31.2 6.5E+02 0.014 26.6 11.8 35 616-650 247-281 (484)
469 COG5108 RPO41 Mitochondrial DN 31.1 3.3E+02 0.0072 29.4 9.0 75 207-284 33-115 (1117)
470 PF04762 IKI3: IKI3 family; I 30.8 9.3E+02 0.02 28.2 16.2 51 215-266 791-843 (928)
471 PRK07003 DNA polymerase III su 30.4 6.6E+02 0.014 28.4 11.5 92 599-693 181-286 (830)
472 PF09986 DUF2225: Uncharacteri 29.6 4.5E+02 0.0097 24.1 11.8 48 599-646 142-194 (214)
473 KOG0686 COP9 signalosome, subu 29.6 6.2E+02 0.013 25.8 14.2 91 65-157 155-255 (466)
474 PF11838 ERAP1_C: ERAP1-like C 29.5 5.5E+02 0.012 25.2 19.4 62 271-335 168-229 (324)
475 PF11817 Foie-gras_1: Foie gra 29.3 2.2E+02 0.0047 26.8 7.2 56 623-678 184-244 (247)
476 PF09454 Vps23_core: Vps23 cor 28.9 1.4E+02 0.003 21.1 4.3 25 516-540 12-36 (65)
477 COG4941 Predicted RNA polymera 28.7 5.8E+02 0.013 25.2 10.9 115 563-680 272-393 (415)
478 PF03745 DUF309: Domain of unk 28.2 2.1E+02 0.0046 19.9 5.4 14 181-194 13-26 (62)
479 PF11817 Foie-gras_1: Foie gra 28.1 3E+02 0.0065 25.9 7.9 26 97-122 179-204 (247)
480 PF10255 Paf67: RNA polymerase 27.4 6.9E+02 0.015 25.6 10.8 134 546-679 38-191 (404)
481 PF11838 ERAP1_C: ERAP1-like C 27.4 6E+02 0.013 24.9 18.6 80 219-301 147-230 (324)
482 PF00244 14-3-3: 14-3-3 protei 27.1 5.2E+02 0.011 24.1 11.3 39 137-175 7-45 (236)
483 PF02847 MA3: MA3 domain; Int 27.0 2.6E+02 0.0056 22.2 6.4 21 208-228 8-28 (113)
484 KOG0292 Vesicle coat complex C 26.9 1.3E+02 0.0027 33.6 5.5 162 525-726 606-768 (1202)
485 KOG3364 Membrane protein invol 26.5 3.8E+02 0.0083 22.4 9.8 63 548-610 33-99 (149)
486 KOG4521 Nuclear pore complex, 26.5 1.1E+03 0.025 27.8 13.0 185 482-675 925-1125(1480)
487 COG2812 DnaX DNA polymerase II 25.8 8.4E+02 0.018 26.1 12.1 47 77-125 181-227 (515)
488 KOG0545 Aryl-hydrocarbon recep 25.7 5.6E+02 0.012 24.0 8.9 55 174-230 238-292 (329)
489 PRK11639 zinc uptake transcrip 25.6 2.2E+02 0.0048 24.9 6.1 44 413-456 31-74 (169)
490 cd02680 MIT_calpain7_2 MIT: do 25.6 1.4E+02 0.003 21.8 3.9 17 629-645 18-34 (75)
491 PF07720 TPR_3: Tetratricopept 25.5 1.6E+02 0.0035 17.7 3.6 23 654-676 3-25 (36)
492 PF02847 MA3: MA3 domain; Int 25.4 3.2E+02 0.007 21.6 6.7 21 483-503 8-28 (113)
493 PRK11639 zinc uptake transcrip 25.1 4.1E+02 0.009 23.2 7.7 37 109-145 38-74 (169)
494 KOG2758 Translation initiation 25.0 6.6E+02 0.014 24.6 14.3 79 602-680 112-195 (432)
495 PF09868 DUF2095: Uncharacteri 24.5 2.4E+02 0.0051 22.4 5.1 44 657-701 66-109 (128)
496 PF09454 Vps23_core: Vps23 cor 24.4 1.9E+02 0.004 20.4 4.3 32 271-302 7-38 (65)
497 KOG0545 Aryl-hydrocarbon recep 24.4 6E+02 0.013 23.8 10.6 61 619-680 232-292 (329)
498 PRK15180 Vi polysaccharide bio 24.1 8.3E+02 0.018 25.4 33.3 36 629-664 788-825 (831)
499 PRK06645 DNA polymerase III su 24.1 8.4E+02 0.018 26.1 10.9 86 597-685 188-290 (507)
500 PRK14963 DNA polymerase III su 24.0 9.1E+02 0.02 25.8 13.2 32 617-649 242-273 (504)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-81 Score=698.37 Aligned_cols=651 Identities=16% Similarity=0.145 Sum_probs=615.0
Q ss_pred hhcCCCCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 55 QSLRHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREAL 134 (729)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (729)
...++......++..+.+.|+++.|+.+|+.+... +.+|+..+|..++..+.+.+.++.+..++..+.+.+..++...+
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 33445566778899999999999999999998664 57899999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 135 ISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE 214 (729)
Q Consensus 135 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 214 (729)
+.++..|++.|+++.|.++|++|. .||..+|+.+|.++++. |++++|..+|++|...|+.||..||+.++.+|+.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~-g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKA-GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 999999999999999999999995 57899999999999999 9999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
.+++..+.+++..|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+ +|..+||++|.+|++.|++++|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 7899999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 295 FKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 295 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.+...+..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 453 (729)
+|+.++.+|++.|++++|.++|++|.+.|+. |..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 454 KLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
+.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999875 5888999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004813 534 LRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGL 613 (729)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 613 (729)
++..+.+.|+.++..++++|+.+|++.|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987 67999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 614 VPDRETMLSLLHGLADGSQLHLVSSGINKLV-SDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGL 692 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 692 (729)
.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. ++||..+|++
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 56999999999999999999999999999999994 7999999999
Q ss_pred HHhhhhhcchhhhhhhccc---cCCCCc--hHHHHhccccC
Q 004813 693 LVGSSVGEEIDSRRFAFDS---SSFPDS--VSDILAEGLGN 728 (729)
Q Consensus 693 ll~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~ 728 (729)
|+++|...++.+.++.... ...|+. .+..|.+.|+.
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 9999998888775543211 123333 36677777753
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-77 Score=671.38 Aligned_cols=597 Identities=17% Similarity=0.178 Sum_probs=569.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 64 DHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVN 143 (729)
Q Consensus 64 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (729)
+.++..+.+.|+++.|+++|+.+. .++..+|+.++..|++.|++++|..+|++|...|+.|+..+|+.++.+|+.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 456777788999999999999984 467889999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 144 HYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALD 223 (729)
Q Consensus 144 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 223 (729)
.+++..+.+++..+.+.|+.|+..+++.++.+|++. |+++.|..+|++|. .||..+||++|.+|++.|++++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC-CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999 99999999999997 5799999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 224 QFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDL 303 (729)
Q Consensus 224 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 303 (729)
+|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|..
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 351 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--- 351 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhc----CCCCCCchHH
Q 004813 304 MPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKC----GYVTSPHNAL 379 (729)
Q Consensus 304 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~l 379 (729)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++++.++++.+. ..+..++++|
T Consensus 352 -~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 -KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred -CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988643 3455578999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHH
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYE 459 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 459 (729)
+++|++.|++++|.++|++|.+. +..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999999876 788999999999999999999999999986 58999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 460 DALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY 539 (729)
Q Consensus 460 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 539 (729)
.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 540 SSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQML-VEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 540 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. +.||..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~ 658 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPA 658 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHH
Confidence 99999999999999999999999999999999999 57999999999999999999999999999999984 789999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+|++|+.+|...|+.+.+....+++.+. .+.+...|..|.+.|...|+|++|.++.+.|++.|++++.
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999987 4667778889999999999999999999999999998765
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-71 Score=604.13 Aligned_cols=523 Identities=20% Similarity=0.278 Sum_probs=401.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGF-KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLN 206 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 206 (729)
.++...|..++..|++.|++++|.++|++|.+.|+ .++...++.++..|.+. |..++|..+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCC----CCHHHHH
Confidence 34566677777777777777777777777776664 35566666677777777 777777777777753 6777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (729)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV--IGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy------------------- 582 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV------------------- 582 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH-------------------
Confidence 7777777777777777777777777777777777777777777777765 4667777777
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCA 443 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 443 (729)
++++.+|++.|++++|.++|+.|.+.++. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 583 ------------naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 583 ------------GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred ------------HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 67777777777777777777777777766 67777777777777777777777777777777777777
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC 523 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (729)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------
Q 004813 524 VMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE--------- 594 (729)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------- 594 (729)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~ 810 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALG 810 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777654321
Q ss_pred --------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 595 --------------QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 595 --------------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
.+..+.|..+|++|++.|+.||..+|+.++.++++.+..+.+..+++.+...+..|+..+|+++++
T Consensus 811 ~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~ 890 (1060)
T PLN03218 811 EPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD 890 (1060)
T ss_pred hhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH
Confidence 122467999999999999999999999999999899999999999999988888999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 661 GLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
++.+. .++|..++++|...|+.|+..
T Consensus 891 g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 GFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 98432 368999999999999999985
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-70 Score=592.25 Aligned_cols=522 Identities=15% Similarity=0.223 Sum_probs=395.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH
Q 004813 94 HTADTYCKMILKLGLAGNVEEMEGLCQNMVKERY-PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV 172 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (729)
++...|..++..+++.|++++|.++|++|.+.++ +++...+..++..|.+.|.+++|.++|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4455666666777777777777777777777764 34555566677777777777777777777743 777777777
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSR 252 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 252 (729)
+.+|++. |+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~-g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASS-QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 7777777 777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 004813 253 VDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRA--LDLMPDELTYEELINCLCENLRLDDANDIL 330 (729)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 330 (729)
+++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765 456777777777777777777777777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC-Cccc
Q 004813 331 EDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDS 409 (729)
Q Consensus 331 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 409 (729)
++|.+.|+.|+..+| +.+|.+|++.|++++|.++|++|...|+. |..+
T Consensus 603 ~~M~e~gi~p~~~ty-------------------------------nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 603 QMIHEYNIKGTPEVY-------------------------------TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred HHHHHcCCCCChHHH-------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 777777777777777 66666677777777777777777776666 6667
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 410 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777766777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----------
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK---------- 559 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 559 (729)
.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777777777777777777777777777777777777777777777777777777777777776654321
Q ss_pred -------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 560 -------------LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 560 -------------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
.+..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++++.+
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 1224679999999999999999999999998888999999999999999888889999999999999
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHH
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSS 653 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 653 (729)
+++. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8543 478999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-64 Score=548.37 Aligned_cols=510 Identities=15% Similarity=0.183 Sum_probs=377.1
Q ss_pred CHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 62 SPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSF 141 (729)
Q Consensus 62 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 141 (729)
+...++..+.+.|++++|+++|+++....++.|+..+|+.++.++.+.++++.+.+++..|.+.|+.|+..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44555666666666666666666665554455666666666666666666666666666666666666666666666666
Q ss_pred HhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 142 VNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESA 221 (729)
Q Consensus 142 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A 221 (729)
++.|+++.|.++|++|. .||..+|+.++.+|++. |++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 66666666666666663 35666666666666666 66666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 222 LDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 222 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (729)
.+++..+.+.|+.||..+|+.||.+|++.|++++|.++|+.|.+ +|..+||++|.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666643 46666666666666666666666666666666
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHH
Q 004813 302 DLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLE 381 (729)
Q Consensus 302 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~ 381 (729)
|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..++ ++|++
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~-------------------------------~~Li~ 368 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN-------------------------------TALVD 368 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh-------------------------------HHHHH
Confidence 66666666666666666666666666666666666666666666 99999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHH
Q 004813 382 CCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDA 461 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 461 (729)
+|++.|++++|.++|++|.+. |..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999998765 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 462 LRVFRQVSA-QSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 462 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 999999976 689999999999999999999999999998876 4579999999999999999999999999999876
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHH---HHHH--------hcCCHHHHHHHHHHH
Q 004813 541 SGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD-VEAYCILI---QSMS--------EQNKLKDCALFFNVM 608 (729)
Q Consensus 541 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~---~~~~--------~~~~~~~A~~~~~~~ 608 (729)
.+ +.+..+|..|++.|++.|++++|.+++++|.+.|+... ..+|..+- ..+. ...-++...++..+|
T Consensus 523 ~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 523 MG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred CC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 54 23567899999999999999999999999999987532 22221110 0000 001134566777888
Q ss_pred HHCCCCCCHH
Q 004813 609 VKAGLVPDRE 618 (729)
Q Consensus 609 ~~~~~~p~~~ 618 (729)
.+.|+.||..
T Consensus 602 ~~~gy~~~~~ 611 (697)
T PLN03081 602 SEYGYVAEEN 611 (697)
T ss_pred HHcCCCCCcc
Confidence 8889888854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-64 Score=547.41 Aligned_cols=475 Identities=16% Similarity=0.160 Sum_probs=418.1
Q ss_pred ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004813 164 LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAG-IVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI 242 (729)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 242 (729)
.+...|+.++..+.+. |++++|.++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3445667777777776 77777777777776543 567777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004813 243 VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR 322 (729)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 322 (729)
++.+|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 77777777777777777777753 67788888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 323 LDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR 402 (729)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 402 (729)
.+.+.+++..+.+.|+.||..++ ++|+++|++.|++++|.++|++|...
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~-------------------------------n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVS-------------------------------CALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeH-------------------------------HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 88888888888888888888888 88888888888888888888888655
Q ss_pred CCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 403 KIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSK 482 (729)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (729)
+..+||.++.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.
T Consensus 289 ---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 289 ---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred ---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR 562 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 562 (729)
|+++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999964 78999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 563 AKDLLVVLAQMLV-EGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 563 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
.++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|..+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999987 599999999999999999999999999998876 588999999999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 642 KLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
++.+. .+.+..+|..|++.|++.|+|++|.+++++|.+.|+++
T Consensus 519 ~l~~~-~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 519 KLYGM-GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHhCC-CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99876 34467899999999999999999999999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-36 Score=350.41 Aligned_cols=618 Identities=13% Similarity=0.045 Sum_probs=436.2
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..|+++.|+..|+.+.+.. +.....+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.
T Consensus 273 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555544332 1112233333444555566666666666555543 344555555666666666666666
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
..++.+.... +.+...+..+...+.+. |++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.
T Consensus 350 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 350 ATLSPALGLD-PDDPAALSLLGEAYLAL-GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 6666665443 33455556666666666 66666666666666543 224555556666666666666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 004813 232 GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYE 311 (729)
Q Consensus 232 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 311 (729)
... +......++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.|+++.+... .+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHH
Confidence 211 22344455566667777777777777776532 34566777777778888888888888877776542 3455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCC---CCCCchHHHHHHHhcCC
Q 004813 312 ELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGY---VTSPHNALLECCCNAGK 388 (729)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~l~~~~~~~~~ 388 (729)
.+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|+.++|...++..... +...+..+...|.+.|+
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 67777778888888888888877653 235566777777777888888888887764333 33345667778888888
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 004813 389 FFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQV 468 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 468 (729)
+++|..+++++....+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|..+++.+
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888877666677788888888888888888888888887654 235566777778888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004813 469 SAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS 548 (729)
Q Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 548 (729)
.+.... +...+..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+ |+..
T Consensus 662 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 776433 57778888888888888888888888887764 4566777778888888888888888888888764 4446
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
++..+..++.+.|++++|.+.++++.+..+. +...+..+...|...|++++|.+.|+++.+.. +.+...++.+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6777888888888888888888888877543 67788888888888899999999998888763 346778888888888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFA 708 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 708 (729)
..|+ .+|+.+++++.+. .+.++..+..++..+...|++++|.++++++.+.+. .+..++..+..++.+.|..+.|..
T Consensus 816 ~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888 7788888888876 455677788888888899999999999999988653 377888888888888888887765
Q ss_pred c
Q 004813 709 F 709 (729)
Q Consensus 709 ~ 709 (729)
.
T Consensus 893 ~ 893 (899)
T TIGR02917 893 E 893 (899)
T ss_pred H
Confidence 4
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.3e-36 Score=345.67 Aligned_cols=620 Identities=12% Similarity=0.017 Sum_probs=371.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 65 HLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNH 144 (729)
Q Consensus 65 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (729)
.+..++...|+++.|.+.++.+.... +.+...+..+...+...|++++|...|+...+.+ +.+..++..++..+...
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~ 240 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEA 240 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 35555667777777777777776543 4556667777777777777777777777776665 45666677777777777
Q ss_pred CChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--------------------------
Q 004813 145 YRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGI-------------------------- 198 (729)
Q Consensus 145 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~-------------------------- 198 (729)
|++++|...++.+.+... .+...+......+... |++++|...|+++.+.+.
T Consensus 241 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 318 (899)
T TIGR02917 241 GEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQK-KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318 (899)
T ss_pred CCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776655421 1111111112222233 444444444444443321
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004813 199 -------VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE 271 (729)
Q Consensus 199 -------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 271 (729)
+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+
T Consensus 319 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 396 (899)
T TIGR02917 319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-EN 396 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 1233344444555555555555555555554432 22444555555566666666666666666554322 23
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 272 LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRG 351 (729)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 351 (729)
...+..+...+...|++++|.+.|+.+.+.+. .+......++..+.+.|++++|..+++++... .+++..++..+...
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAI 474 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 44455555555555566666555555554332 12223344455555666666666666665543 23445566666677
Q ss_pred HHccCChHHHHHHHHhhcCCCC---CCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHH
Q 004813 352 LCEVGKFDESVNFLEDKCGYVT---SPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 352 ~~~~~~~~~a~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
+...|++++|.+.|++....++ ..+..+...+...|++++|.+.++++....+.+..++..+...+.+.|+.++|..
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777665433332 2345556666667777777777777766655566666666677777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004813 429 LLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC 508 (729)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 508 (729)
.++++...+ ..+...+..+...+...|++++|..+++.+.+... .+...|..+..++...|++++|...|+++.+..
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777666553 22445555666666677777777777776665432 356666677777777777777777777766543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+.++ .+...+..+
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 709 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELE 709 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHH
Confidence 3355566666667777777777777777766543 34455666666666666777777777766666543 255556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
...+...|++++|.+.|+++.+. .|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCH
Confidence 66666677777777777766663 344455556666666666777776666666665 355566666666666666777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcch
Q 004813 669 SQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEI 702 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 702 (729)
++|.++|+++.+.+ +++...+..+...+...|+
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 77777776666542 3344555666555555555
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.5e-28 Score=275.85 Aligned_cols=627 Identities=9% Similarity=0.013 Sum_probs=430.8
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-----------
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREAL----------- 134 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------- 134 (729)
-+++....++.+.|.+.++.+.... +.++..+..++..+.+.|+.++|.+.++++.+.. |.+....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCC
Confidence 3455667899999999999998765 5678889999999999999999999999998886 4443332
Q ss_pred -----HHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 135 -----ISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLL 209 (729)
Q Consensus 135 -----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 209 (729)
..+...+.+.|++++|.+.|+++.+.+ +|+...-..+........|+.++|...|+++.+.. +.+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344557889999999999999997754 34432212222222222389999999999999874 33677788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--hhh-----------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPN--SRT-----------------FEIVIKGLIANSRVDDSVSILGEMFDLGIQL 270 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~-----------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 270 (729)
..+...|+.++|++.++++.+...... ... +...+..+-.....+.|...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999866421000 001 1111111111122344555555544332223
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHhH----
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP-TDDVF---- 345 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~---- 345 (729)
+... ......+...|++++|+..|++..+... .+..++..+..++.+.|++++|+..|++..+..... ....+
T Consensus 269 ~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred chHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3221 2335567778999999999988887642 367788888888999999999999999888653211 11111
Q ss_pred --------HHHHHHHHccCChHHHHHHHHhhcCCCCC---CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 004813 346 --------VDIVRGLCEVGKFDESVNFLEDKCGYVTS---PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPI 414 (729)
Q Consensus 346 --------~~l~~~~~~~~~~~~a~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 414 (729)
......+.+.|++++|+..+++....++. .+..+...+...|++++|++.|+++.+..+.+...+..+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12244567888999999988875554443 4566778888899999999999998887766666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004813 415 RWLCENEEIRKAYELLGRMVVSSVV--------PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEG 486 (729)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (729)
..|. .++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6664 45778888887765332100 01123445566677888999999999888877544 66677778888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------hHHHHHHHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS---------TYTKIMLGL 557 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 557 (729)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 888999999999999887643 3345555555555667888888888887764332222211 123445667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVS 637 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 637 (729)
...|+.++|.++++. ...+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788888888888772 13355566777888888888888888888888752 224677788888888888888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC---CHHHHHHHHhhhhhcchhhhhhhc
Q 004813 638 SGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGW--VP---DATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
+.++.+.+. .+.+...+..++.++...|++++|.++++++....- .| +...+..+...+...|..+.|...
T Consensus 658 ~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 658 AQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888887765 344566777788888888888888888888876421 11 223445555666677776666544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-26 Score=264.30 Aligned_cols=600 Identities=11% Similarity=0.017 Sum_probs=437.8
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTY----------------CKMILKLGLAGNVEEMEGLCQNMVKERYPN 129 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 129 (729)
...++...|+.++|.+.++.+.+.. |.+.... ......+.+.|++++|...|+.+.+.+ ++
T Consensus 68 ~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~ 144 (1157)
T PRK11447 68 RFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PP 144 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CC
Confidence 4566678999999999999998764 3333221 233456888999999999999998775 44
Q ss_pred CHHH-HHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HH---
Q 004813 130 VREA-LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN--VD--- 203 (729)
Q Consensus 130 ~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~--- 203 (729)
+... ...........|+.++|++.++++.+.. +-+...+..+...+... |++++|+..++++.+...... ..
T Consensus 145 ~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~-g~~~eAl~~l~~~~~~~~~~~~aa~~~~ 222 (1157)
T PRK11447 145 ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS-GRRDEGFAVLEQMAKSPAGRDAAAQLWY 222 (1157)
T ss_pred ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 4322 2222222334699999999999998764 44566777788888888 999999999999876421100 01
Q ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004813 204 --------------TLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ 269 (729)
Q Consensus 204 --------------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 269 (729)
.+...+..+-.....+.|...+..+......|+... ......+...|++++|+..|++..+...
T Consensus 223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P- 300 (1157)
T PRK11447 223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP- 300 (1157)
T ss_pred HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 111112222222234456666655544322333221 2335567789999999999999998643
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHH------------HHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMP-DELTYE------------ELINCLCENLRLDDANDILEDMIVI 336 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~ 336 (729)
.+...+..+...|.+.|++++|+..|++..+..... +...|. .....+.+.|++++|+..|+++.+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467788899999999999999999999998765321 111121 2234577899999999999999986
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC---CchHHHHHHHhcCChhHHHHHHHHHHhCCCC--------
Q 004813 337 GLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS---PHNALLECCCNAGKFFLAKCILEKMADRKIA-------- 405 (729)
Q Consensus 337 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------- 405 (729)
. +.+...+..+...+...|++++|++.|++....++. .+..+...|. .++.++|...++.+......
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 234556777889999999999999999986655444 3445555564 46789999888765432111
Q ss_pred -CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 406 -DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV 484 (729)
Q Consensus 406 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 484 (729)
....+..+...+...|++++|++.|++.++..+. +...+..+...+.+.|++++|...++.+.+.... +...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 1234556777888999999999999999887533 5567778888999999999999999999876443 555555555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSS---------SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
..+...++.++|...++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+..
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~ 611 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHH
Confidence 66778999999999998875432222221 223456778899999999999872 2456667788899
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLH 634 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 634 (729)
.+.+.|++++|++.|++..+..+. +...+..++..|...|++++|++.++.+.+. .| +...+..+..++...|+++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998554 7888999999999999999999999988864 44 4556677888899999999
Q ss_pred HHHHHHHHHHhCCC--CC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCC
Q 004813 635 LVSSGINKLVSDSE--VL---DSSMYNILINGLWKEGLTSQASYLLDLMLG-KGWV 684 (729)
Q Consensus 635 ~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~ 684 (729)
+|.++++++..... ++ +...+..++..+...|++++|.+.|++... .|+.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 99999999987621 22 234677789999999999999999999874 3444
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2e-22 Score=220.24 Aligned_cols=574 Identities=12% Similarity=0.023 Sum_probs=307.6
Q ss_pred HcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 004813 71 DNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGA 150 (729)
Q Consensus 71 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 150 (729)
...|+++.|...|+.+.+.. |.+..++..+...+.+.|++++|+..+++..+.+ |.+...+..+ ..+ +++++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 34599999999999998875 5668889999999999999999999999999886 4444444444 222 999999
Q ss_pred HHHHHHHHhCCCcccHHhHHHHHHH--------HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 004813 151 MRVLVNMNSGGFKLSVDVFNVVLGA--------IVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYL-LEVLFETNRIESA 221 (729)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~~~~~~A 221 (729)
..+++++.+.. +-+..++..+... |.+ .+.|.+.++ .......|+..+.... ...|...|++++|
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 99999998763 3334444444443 443 466666665 4443344455545554 8999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 222 LDQFRRMHKKGCCPNSRTFEIVIKGLIA-NSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 222 ~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
++++.++.+.+.. +..-...|..+|.. .++ +.+..+++. .+..+...+..++..|.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 9999999998533 44556667777777 466 777777553 3346888899999999999999999999998765
Q ss_pred CCCC-CCHhhHHH------------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 301 LDLM-PDELTYEE------------------------------LINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349 (729)
Q Consensus 301 ~~~~-p~~~~~~~------------------------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 349 (729)
.... |...+|.- ++..+.+.++++.++++.. +.|.......-.
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~ 349 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERY 349 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHH
Confidence 4221 22222211 1344555666665544421 223322211111
Q ss_pred HHHHccCChHHHHHHHHhhcCC---CCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC---CcccchHHHHHHHhc---
Q 004813 350 RGLCEVGKFDESVNFLEDKCGY---VTSPHNALLECCCNAGKFFLAKCILEKMADRKIA---DCDSWNIPIRWLCEN--- 420 (729)
Q Consensus 350 ~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~--- 420 (729)
.+....+...++......+-.. +......+.-...+.|+.++|.++|+........ +.....-++..|.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 1111223333333332222211 1111222222334445555555555544432110 111111222222222
Q ss_pred ----------------------CCHHHHHHHHHHHHHCC-C-CC--CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 004813 421 ----------------------EEIRKAYELLGRMVVSS-V-VP--DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV 474 (729)
Q Consensus 421 ----------------------~~~~~a~~~~~~~~~~~-~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 474 (729)
|+..++...++.....- . .+ +...|..+..++.. ++.++|...+.......
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 12222222222221110 1 11 23344444443333 45555555444444332
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIM 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 554 (729)
|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 23222222233334555555555555554432 2333334444445555555555555555555443 11222222222
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQL 633 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 633 (729)
......|++++|...+++.++. .|+...|..+..++.+.|++++|...+++..+. .|+ ...++.+..++...|+.
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCH
Confidence 2333345555555555555544 234445555555555555555555555555553 222 33444455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++|+..+++..+. .|.++..+..+..++...|++++|...+++..+
T Consensus 660 eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 660 AQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555554 234445555555555555555555555555554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.3e-21 Score=214.04 Aligned_cols=572 Identities=10% Similarity=-0.001 Sum_probs=410.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChh
Q 004813 105 KLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184 (729)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (729)
.+...|++++|...|+...+.. |.+..++..+...|...|+.++|+..+++..+. .|+...|..++..+ ++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i----~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI----PVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh----ccCh
Confidence 3444599999999999999987 666999999999999999999999999999886 45555555444333 6788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhH
Q 004813 185 DFVFVYKEMVKAGIVPNVDTLNYLLEV--------LFETNRIESALDQFRRMHKKGCCPNSRTFEIV-IKGLIANSRVDD 255 (729)
Q Consensus 185 ~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~ 255 (729)
+|..+++++.+..+ -+..++..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 99999999998743 245555555554 5544 56666665 3333334455555555 899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 256 SVSILGEMFDLGIQLELSFYTCIIPMLCR-ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (729)
|+.++..+.+.+. .+......|...|.. .++ +++..+++.. ++.+...+..+...|.+.|+.++|..+++++.
T Consensus 201 Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 9999999999875 445556777778887 466 8888886642 33578889999999999999999999999876
Q ss_pred HcCCC-CCHHhHHHH------------------------------HHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHH
Q 004813 335 VIGLT-PTDDVFVDI------------------------------VRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECC 383 (729)
Q Consensus 335 ~~~~~-p~~~~~~~l------------------------------~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~ 383 (729)
..-.. |...++... +..+.+.+.++-+.++.. ..+.++ ...++..
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~r~~ 350 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE---MLEERYA 350 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch---HHHHHHh
Confidence 43211 222222211 233334455554444422 222222 1122222
Q ss_pred H--hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHhhcCC--
Q 004813 384 C--NAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVS-S-VVPDCATYSAFVLGKCKLCN-- 457 (729)
Q Consensus 384 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~-- 457 (729)
. ..+...++...+..|-...+.+......+.....+.|+.++|..+|+..... + -.++......++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 1 3356667777777777665555555666666678899999999999998762 1 22334445567777776655
Q ss_pred -HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004813 458 -YEDALRV----------------------FRQVSAQ-SL-VL--DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL 510 (729)
Q Consensus 458 -~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 510 (729)
...+..+ ....... +. .+ +...|..+..++.. ++.++|...+.+.... .|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC
Confidence 2333222 2222111 11 23 56677888887776 8999999988888775 46
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004813 511 SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQ 590 (729)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 590 (729)
+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++.++.++. +...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 6555444555567899999999999998654 455555667788889999999999999999887532 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
.+...|++++|...+++.++ ..|+...+..+..++.+.|+.++|+..+++..+. .|.+...++.+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHH
Confidence 55566999999999999998 4678889999999999999999999999999998 46678889999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHhhhhhcchhhhhhhc
Q 004813 671 ASYLLDLMLGKGWVPD-ATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 671 A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
|++.+++..+. .|+ ...+..+-.++...|+.+.|..+
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999984 454 45678888888899998887654
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.6e-21 Score=194.63 Aligned_cols=568 Identities=11% Similarity=0.011 Sum_probs=336.4
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 004813 76 LSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLV 155 (729)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 155 (729)
.+.|.+.|..+.++. +++.-.+-.-+.+....+++..|..+|..++.......+.....+..++.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 577777777777664 455545444455555667777888877776665443344455556667777777777777777
Q ss_pred HHHhCCCcccHHhHHHHHHHHHhc--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 156 NMNSGGFKLSVDVFNVVLGAIVEE--KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGC 233 (729)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 233 (729)
++.+.+ +.++.++..|-..-... ...+..+...+...-... +-|....+.|.+.|...|++..+..+...+.....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 776643 12222222221111111 123444555555554432 33566677777777777777777777777665421
Q ss_pred C--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 004813 234 C--PNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYE 311 (729)
Q Consensus 234 ~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 311 (729)
. .-...|-.+.++|...|++++|...|.+..+.....-+..+-.|...|.+.|+++.+...|+.+.+... .+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHH
Confidence 1 112346667777777777777777777766543222233344566777777777777777777766431 2344555
Q ss_pred HHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcC
Q 004813 312 ELINCLCENL----RLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387 (729)
Q Consensus 312 ~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~ 387 (729)
.|...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+.. +..+.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~--------------------- 437 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYG--------------------- 437 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHH---------------------
Confidence 5555555543 3455666665555432 2344445444333332222111 22111
Q ss_pred ChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HhHHHHHHHHhhcCC
Q 004813 388 KFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVS---SVVPDC------ATYSAFVLGKCKLCN 457 (729)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~ll~~~~~~~~ 457 (729)
.|..+ +...+.. .+...|.+...+...|++++|...|...... .-.+|. .+-..+....-..++
T Consensus 438 ---~A~d~---L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 438 ---NALDI---LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred ---HHHHH---HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 11111 1122222 5556666666666666666666666665443 112222 112223334445567
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSL 537 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (729)
.+.|.+.|..+.+..+. -+..|-.++......++..+|...+++..... ..++..+..+...+.....+..|.+-|..
T Consensus 512 ~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 77777777777765321 22233333322333466777777777776643 45566666666667776777777665555
Q ss_pred HHHcC-CCCCHHhHHHHHHHHH------------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 538 AYSSG-TSYTTSTYTKIMLGLV------------KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 538 ~~~~~-~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
..+.- ..+|+.+.-.|.+.|. ..+..++|+++|.+.++..++ |...-|.+.-.++..|++.+|..+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHH
Confidence 54432 1245555555555443 223467788888888887655 777777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
|.+..+... -+..+|..+..+|..+|++-.|+++|+..... ....+..+...|.+++.+.|.+.+|.+.+......
T Consensus 669 FsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 669 FSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 888887633 24457778888888888888888888887766 33446677888888888888888888888877764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-20 Score=181.83 Aligned_cols=443 Identities=13% Similarity=0.064 Sum_probs=304.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH-HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL-GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVL 212 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 212 (729)
...|..-..+.|++.+|++.-..+-..+ |....-..++ ..+.+. .+.+....--....+. .+.-..+|..+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~-~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQG-SRLDKSSAGSLLAIRK-NPQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcc-cchhhhhhhhhhhhhc-cchHHHHHHHHHHHH
Confidence 4445555567777777777666553321 2211112222 233333 4444433332222222 233466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcCCHHHH
Q 004813 213 FETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTC-IIPMLCRENKLEEA 291 (729)
Q Consensus 213 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A 291 (729)
-..|++.+|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +-...-..|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 88888888888888887752 124567777777888888888888888777763 355443333 23333346778888
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHccCChHHHHHHHHhhc
Q 004813 292 IRLFKMMRALDLMPD-ELTYEELINCLCENLRLDDANDILEDMIVIGLTPTD-DVFVDIVRGLCEVGKFDESVNFLEDKC 369 (729)
Q Consensus 292 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~ 369 (729)
...|.+..+.. |. .+.|+.|...+-.+|+...|++-|++.++. .|+- ..|
T Consensus 204 ~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAY------------------------ 255 (966)
T KOG4626|consen 204 KACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAY------------------------ 255 (966)
T ss_pred HHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHH------------------------
Confidence 88877776643 33 456777777788888888888888887763 3542 334
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004813 370 GYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFV 449 (729)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 449 (729)
-.|...|...+.+++|...+.+.....+.....+..+...|..+|..+-|+..|++.++..+. =...|+.+.
T Consensus 256 -------iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 256 -------INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred -------hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 556666667777777777777776666656677777777788888888888888888776432 356788888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 004813 450 LGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-SSSFNILIYGLCVMRKV 528 (729)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 528 (729)
.++-..|++.+|.+.++......+. .....+.|...|...|.+++|..+|....+- .|. ...++.|...|.++|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 8888888888888888888876543 5566777888888888888888888888774 343 45678888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 529 DKAIRLRSLAYSSGTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 529 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
++|+..|++.+.. .|+ ...|+.+...|-..|+.+.|.+.+.+.+..++. -...++.|...|-..|++.+|++-|++
T Consensus 405 ~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 405 DDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 8888888888764 454 457888888888888888888888888876433 356777888888888999999998888
Q ss_pred HHHCCCCCC-HHHHHHHHHHH
Q 004813 608 MVKAGLVPD-RETMLSLLHGL 627 (729)
Q Consensus 608 ~~~~~~~p~-~~~~~~l~~~~ 627 (729)
.++ ++|| ...|..++.++
T Consensus 482 aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 482 ALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHc--cCCCCchhhhHHHHHH
Confidence 887 5666 34555555553
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.6e-19 Score=180.85 Aligned_cols=588 Identities=11% Similarity=0.038 Sum_probs=398.1
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004813 77 SSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVN 156 (729)
Q Consensus 77 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 156 (729)
..|...|+.+-+..-..++...+......+....+.+.|.+.|..+.+.. |++.-.+..-.......+++..|..+|..
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34555555544333223333333333322222223578888888887775 55544444444444466788999999988
Q ss_pred HHhCC--CcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 004813 157 MNSGG--FKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFET---NRIESALDQFRRMHKK 231 (729)
Q Consensus 157 ~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~ 231 (729)
+.... .+||+.. .+-..+.+. |+.+.|...|++..+.++ .++.++-.|.-.-... ..+..++.++...-..
T Consensus 190 al~inp~~~aD~rI--gig~Cf~kl-~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 190 ALRINPACKADVRI--GIGHCFWKL-GMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHhcCcccCCCccc--hhhhHHHhc-cchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence 64432 3344432 222455667 888888888888887642 2333333333222222 3345566666655443
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-
Q 004813 232 GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ--LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDEL- 308 (729)
Q Consensus 232 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 308 (729)
. .-|+...+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++|...|++++|...|.+..+.. ++.+
T Consensus 266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~ 342 (1018)
T KOG2002|consen 266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFV 342 (1018)
T ss_pred c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcc
Confidence 2 236677778888888888888888888888754311 112346667888888888888888887777654 4433
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcC
Q 004813 309 -TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387 (729)
Q Consensus 309 -~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~ 387 (729)
.+--|...+.+.|+++.+...|+.+.+.. +-+..|. ..|...|...+
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm-------------------------------~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM-------------------------------KILGCLYAHSA 390 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH-------------------------------HHHHhHHHhhh
Confidence 34456777888888888888888887742 2234444 33333343332
Q ss_pred ----ChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHhHHHHHHHHhhcCCHH
Q 004813 388 ----KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM----VVSSVVPDCATYSAFVLGKCKLCNYE 459 (729)
Q Consensus 388 ----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~ 459 (729)
..+.|..++.+.....+.|...|-.+...+.+..-+.. +..|... ...+-.+.....|.+...+...|+++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 45677777777777766688888888877766554444 6666554 34455577888999999999999999
Q ss_pred HHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 004813 460 DALRVFRQVSAQ---SLVLDS------ISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSS-SFNILIYGLCVMRKVD 529 (729)
Q Consensus 460 ~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 529 (729)
.|...|+..... ...+|. .+--.+..++-..++++.|.+.+..+.+. .|+-+ .|..++..-...++..
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcH
Confidence 999999988754 122222 22223555666778999999999999886 35543 3444442333457888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cC
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE-GCALDVEAYCILIQSMSE------------QN 596 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~~ 596 (729)
+|...++.....+ ..++..++.+...+.+...+..|.+-|..+.+. ...+|..+...|.+.|.+ .+
T Consensus 548 ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 9999999988765 566677777888888888999999988777765 233677777777775542 24
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
..++|+++|.+.++... -|...-+.+.-.++..|++.+|..+|.+..+. ......+|-.++.+|...|+|..|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHH-HhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 56789999999998532 25666677888899999999999999999998 34567789999999999999999999999
Q ss_pred HHHhCCC-CCCHHHHHHHHhhhhhcchhhhhhhcc
Q 004813 677 LMLGKGW-VPDATTHGLLVGSSVGEEIDSRRFAFD 710 (729)
Q Consensus 677 ~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~ 710 (729)
...+.-+ .-+......|.+++.+.|....+..+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9887533 456677889999999999888777653
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=9.9e-21 Score=182.88 Aligned_cols=445 Identities=13% Similarity=0.056 Sum_probs=225.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (729)
.|..-..+.|++++|++.-...-.+. +.+....-.+-..+.+..+.+.....-....+. .+.-..+|..+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 33444445566666665544332221 111112222223333444444433322222221 1123445666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH-HHHHHHccCChHHHHHHH
Q 004813 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVD-IVRGLCEVGKFDESVNFL 365 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~l 365 (729)
++++|+.+|+.+.+... .....|..+..++...|+.+.|.+.|.+.++ +.|+.....+ +...+...|++++|...+
T Consensus 131 ~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 66666666666665432 2345566666666666666666666666655 2344433321 111222233333333333
Q ss_pred HhhcCCCC---CCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004813 366 EDKCGYVT---SPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC 442 (729)
Q Consensus 366 ~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 442 (729)
.+.....+ ..|..|...+-..|+...|+..|++....++.-...|-.|...|...+.+++|+..|.+.....+. ..
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A 286 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HA 286 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-ch
Confidence 22221111 124555555666666666666666666555544455555666666666666666666555443211 23
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
..+..+...|...|..+.|+..+++.++..+. -+..|+.|..++-..|++.+|++.+.+.+... +......+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 44445555555666666666666666554322 34456666666666666666666666665532 22344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD-VEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 600 (729)
...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.++- .|+ ...|+.+...|-..|+.+.
T Consensus 365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHH
Confidence 6666666666666655543 222 334555555566666666666666655543 333 3455555566666666666
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCC
Q 004813 601 CALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-SSMYNILINGLWKEGL 667 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 667 (729)
|++.|.+.+. +.|. ....+.|...|...|++.+|+.-+++..+. +|| +..|..++.++.---+
T Consensus 441 A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 441 AIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhc
Confidence 6666665554 3343 344555555666666666666666665554 232 2344444444433333
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=5.2e-19 Score=191.09 Aligned_cols=433 Identities=9% Similarity=-0.061 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
..+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+... .+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34556777788888999999998888764 56777788888888888888888888888887542 3456777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHH
Q 004813 283 CRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESV 362 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 362 (729)
...|++++|+..|......+...+. ....++..+.. ..+.....+..+.. +++......+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~------------ 266 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN------------ 266 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH------------
Confidence 8888888888887766554321121 11122221111 12222222222221 111111111111
Q ss_pred HHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH---HhcCCHHHHHHHHHHHHHCC-C
Q 004813 363 NFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWL---CENEEIRKAYELLGRMVVSS-V 438 (729)
Q Consensus 363 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~ 438 (729)
|...........-+....+........+..+...+ ...+++++|.+.|+.....+ .
T Consensus 267 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 267 --------------------YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred --------------------HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 11110111111111111010000011111111111 22456778888888777654 2
Q ss_pred CC-CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 439 VP-DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 439 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
.| ....+..+...+...|++++|...++...+..+. +...|..+...+...|++++|...|+++.+.. +.+..+|..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 22 3345666667777788888888888888776432 45567777777888888888888888887753 345677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++.++..+. +...|+.+...+...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccC
Confidence 8888888888888888888887764 345666777778888888888888888888776332 56777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRE------TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 671 (729)
+++|++.|++.++.....+.. .++.....+...|++++|.+++++..+.. +.+...+..++..+.+.|++++|
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 888888888887742111111 11112222334688888888888887763 44556788888888888888888
Q ss_pred HHHHHHHHhC
Q 004813 672 SYLLDLMLGK 681 (729)
Q Consensus 672 ~~~~~~~~~~ 681 (729)
+++|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.3e-21 Score=195.04 Aligned_cols=311 Identities=11% Similarity=0.009 Sum_probs=259.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHhhcC
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPD---CATYSAFVLGKCKLC 456 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~ 456 (729)
...+...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456789999999999999998877778899999999999999999999999987543222 246778888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----SSSFNILIYGLCVMRKVDKAI 532 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~ 532 (729)
+++.|..+|+.+.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999987643 4678899999999999999999999999988642222 124566777888999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 533 RLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG 612 (729)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 612 (729)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|...|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998764 34566788888999999999999999999998754433567888999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 613 LVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK---EGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++|..++++|.+.+++|+..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 577777788999999999999999999999886 5788889888888775 569999999999999988877765
Q ss_pred HHHHHhhhhhcch
Q 004813 690 HGLLVGSSVGEEI 702 (729)
Q Consensus 690 ~~~ll~~~~~~~~ 702 (729)
..|..+|.
T Consensus 355 -----~~c~~cg~ 362 (389)
T PRK11788 355 -----YRCRNCGF 362 (389)
T ss_pred -----EECCCCCC
Confidence 34555554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.3e-18 Score=184.88 Aligned_cols=429 Identities=9% Similarity=-0.053 Sum_probs=301.3
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004813 168 VFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGL 247 (729)
Q Consensus 168 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 247 (729)
.+...-..+.+. |+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~-~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRN-KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 345566777888 9999999999999875 6778889999999999999999999999998753 23566888899999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004813 248 IANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDAN 327 (729)
Q Consensus 248 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 327 (729)
...|++++|+.-|..+...+...+.. ...++..+.. ..+........+... ++...+..+.. +..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcch
Confidence 99999999999888776543222222 1222222212 223333333333221 22223332222 22211111111
Q ss_pred HHHHHHHHcCCCCCH-HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHH---HHhcCChhHHHHHHHHHHhCC
Q 004813 328 DILEDMIVIGLTPTD-DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLEC---CCNAGKFFLAKCILEKMADRK 403 (729)
Q Consensus 328 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 403 (729)
.-+.+..+ ..+.. ..+ ..+... ....+++++|.+.|++....+
T Consensus 278 ~~~~~~~~--~~~~~~~~~-------------------------------~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQ-------------------------------LQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred hhhhcccc--cccccccch-------------------------------HHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 11111111 01110 000 011100 123467888999998888764
Q ss_pred C--C-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004813 404 I--A-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISY 480 (729)
Q Consensus 404 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 480 (729)
. + ....|+.+...+...|++++|+..+++.....+. +...|..+...+...|++++|...|+.+.+.... +...|
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~ 402 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIY 402 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 2 2 5567888888888999999999999998876422 3557788888889999999999999999887544 67888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL 560 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 560 (729)
..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...++.+...+...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 889999999999999999999998864 3456777888889999999999999999988764 45577888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 004813 561 QRAKDLLVVLAQMLVEGCALDVE------AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQL 633 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 633 (729)
|++++|++.|++..+.....+.. .++..+..+...|++++|.+++++.++. .|+ ...+..+...+...|++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCH
Confidence 99999999999988764321111 1222222334469999999999998875 344 45688899999999999
Q ss_pred HHHHHHHHHHHhC
Q 004813 634 HLVSSGINKLVSD 646 (729)
Q Consensus 634 ~~A~~~~~~~~~~ 646 (729)
++|++.|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.5e-20 Score=188.99 Aligned_cols=300 Identities=12% Similarity=0.042 Sum_probs=163.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHccCCh
Q 004813 282 LCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTD---DVFVDIVRGLCEVGKF 358 (729)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~ 358 (729)
+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++. ..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~------------- 110 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL------------- 110 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH-------------
Confidence 4455666666666666665432 23445666666666666666666666666553211111 111
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004813 359 DESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSV 438 (729)
Q Consensus 359 ~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 438 (729)
..+...|.+.|+++.|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+...+.
T Consensus 111 ------------------~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 111 ------------------QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred ------------------HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 44555555666666666666665554333445555566666666666666666666655432
Q ss_pred CCCH----HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004813 439 VPDC----ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS 514 (729)
Q Consensus 439 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 514 (729)
.+.. ..+..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++|.++++++...+......+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 2211 12334444555666666666666666554322 344555556666666666666666666655321111234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
++.++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 5555666666666666666666665542 34444455556666666666666666665554 4555555555555443
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 595 ---QNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 595 ---~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
.|+.+++..++++|.+.++.|++.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 335566666666666554444443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.1e-17 Score=179.79 Aligned_cols=358 Identities=11% Similarity=0.052 Sum_probs=213.8
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004813 214 ETNRIESALDQFRRMHKK--GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEA 291 (729)
Q Consensus 214 ~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (729)
+..+|+.-.-+|....+. .-.-+......++..+.+.|+++.|..+++......... ...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 445555554444443321 001122333445566677777777777777777654433 33334444555667778888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcC
Q 004813 292 IRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCG 370 (729)
Q Consensus 292 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~ 370 (729)
.+.|+++....+ .+...+..+...+...|++++|...++++.+. .|+ ...+
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~------------------------- 147 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIF------------------------- 147 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH-------------------------
Confidence 887777776542 34456666677777777888887777777763 344 3333
Q ss_pred CCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 371 YVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVL 450 (729)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 450 (729)
..+...+...|++++|...++.+....+.+...+..+ ..+...|++++|...++.+......++...+..+..
T Consensus 148 ------~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 148 ------ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred ------HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4455556666666666666666555444433333332 235566777777777766655533333344444455
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 451 GKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITE----AVEVFCCMSKNGCSLSSSSFNILIYGLCVMR 526 (729)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (729)
.+...|++++|...++.+.+.... +...+..+...+...|++++ |...|+++.+.. +.+...+..+...+...|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 666677777777777776665433 55566666677777777664 667777776642 334556666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
++++|...++++.+.. +.+...+..+..++.+.|++++|...|+++...++. +...+..+..++...|++++|.+.|+
T Consensus 299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776654 233445556666777777777777777777665322 22223334556667777777777777
Q ss_pred HHHHC
Q 004813 607 VMVKA 611 (729)
Q Consensus 607 ~~~~~ 611 (729)
+..+.
T Consensus 377 ~al~~ 381 (656)
T PRK15174 377 HYIQA 381 (656)
T ss_pred HHHHh
Confidence 76663
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.1e-17 Score=176.29 Aligned_cols=328 Identities=12% Similarity=0.023 Sum_probs=162.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCC
Q 004813 102 MILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKR 181 (729)
Q Consensus 102 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (729)
++..+.+.|++++|..+++...... +.+...+..++.+....|++++|.+.|+++.+.. +.+...+..+...+.+. |
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~-g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS-K 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-C
Confidence 3444555566666666655555543 3344444455555555566666666666655432 23334444444555555 5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 182 GFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILG 261 (729)
Q Consensus 182 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (729)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+.. +..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHHH
Confidence 6666666666555542 223445555555555566666666655555443211 1112212 223445566666666655
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH----HHHHHHHHHHcC
Q 004813 262 EMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDD----ANDILEDMIVIG 337 (729)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~ 337 (729)
.+.+....++...+..+...+...|++++|...|++...... .+...+..+...+...|++++ |...|++..+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 555443223333333344555556666666666665555432 234445555555555665553 55555555543
Q ss_pred CCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 004813 338 LTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRW 416 (729)
Q Consensus 338 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 416 (729)
.|+ ...+ ..+...+.+.|++++|...+++.....+.+...+..+...
T Consensus 280 -~P~~~~a~-------------------------------~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 280 -NSDNVRIV-------------------------------TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred -CCCCHHHH-------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 232 2233 3444444455555555555555554444444444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 004813 417 LCENEEIRKAYELLGRMVVSSVVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQ 471 (729)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 471 (729)
+.+.|++++|...|+++...+ |+. ..+..+..++...|+.++|...|+...+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555555555554432 222 12222334445555555555555555543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.5e-17 Score=177.87 Aligned_cols=421 Identities=11% Similarity=0.058 Sum_probs=243.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR 284 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (729)
..-.+......|+.++|++++.+..... ..+...+..+...+...|++++|..++++..+..+ .+...+..++..+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3344444555566666666655554311 22333455555555555666666666665554321 223344455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
.|++++|+..+++..+... .+.. +..+...+...|+.++|+..++++.+. .|+....
T Consensus 96 ~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~------------------- 152 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQY------------------- 152 (765)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-------------------
Confidence 5666666665555554421 2233 555555555555555555555555553 2332221
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCAT 444 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 444 (729)
+..+...+...+..+.|...++.... .+ + + ....+ ...
T Consensus 153 -----------~~~la~~l~~~~~~e~Al~~l~~~~~-~p-~---~-------------~~~l~-------------~~~ 190 (765)
T PRK10049 153 -----------PTEYVQALRNNRLSAPALGAIDDANL-TP-A---E-------------KRDLE-------------ADA 190 (765)
T ss_pred -----------HHHHHHHHHHCCChHHHHHHHHhCCC-CH-H---H-------------HHHHH-------------HHH
Confidence 03334444455555555555544332 10 0 0 00000 000
Q ss_pred HHHHHHHH-----hhcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHHHCCCC-
Q 004813 445 YSAFVLGK-----CKLCNY---EDALRVFRQVSAQ-SLVLDSI-SY----SKLVEGLCQVEKITEAVEVFCCMSKNGCS- 509 (729)
Q Consensus 445 ~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 509 (729)
...++... ...+++ ++|...++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 00111111 111223 6677777777643 1122211 11 11123345668888888888888776421
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------
Q 004813 510 LSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY---TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-------- 578 (729)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------- 578 (729)
|+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+....+
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 221 22224667888888888888888877643211 123455566677888888888888888876532
Q ss_pred ---CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 004813 579 ---ALD---VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS 652 (729)
Q Consensus 579 ---~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 652 (729)
.|+ ...+..+...+...|++++|+++++++... .+-+...+..+...+...|+.++|++.++++.+. .|.+.
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~ 427 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNI 427 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCh
Confidence 123 234456677888899999999999999875 2334677888888999999999999999999987 35567
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
..+..++..+...|++++|..+++++++. .|+......+=...
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 78888888999999999999999999974 67766554444443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.5e-16 Score=174.94 Aligned_cols=418 Identities=11% Similarity=0.010 Sum_probs=237.3
Q ss_pred cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004813 163 KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI 242 (729)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 242 (729)
+.+.....-.+...... |+.++|+.++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~-g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWA-GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33444444455555566 77777777777776521 3445567777777777777777777777766541 223455556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004813 243 VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR 322 (729)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 322 (729)
+...+...|++++|...++++.+... .+.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 66677777777777777777776532 3344 66677777777888888888877777542 234445556666677777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHH-----HhcCCh---hHHHH
Q 004813 323 LDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECC-----CNAGKF---FLAKC 394 (729)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~ 394 (729)
.+.|+..++.... .|+.... +. ...+ ..++..+ ...+++ ++|+.
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~---l~-------~~~~---------------~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRD---LE-------ADAA---------------AELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHH---HH-------HHHH---------------HHHHHhhcccccChhHHHHHHHHHHH
Confidence 7777777765543 2321000 00 0000 1111111 112223 55666
Q ss_pred HHHHHHhCCCCCcccchH-------HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhhcCCHHHHHHHHH
Q 004813 395 ILEKMADRKIADCDSWNI-------PIRWLCENEEIRKAYELLGRMVVSSVV-PDCATYSAFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 466 (729)
.++.+......++..... .+..+...|++++|+..|+.+.+.+.. |+. ....+...+...|++++|...|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666432211111111 123345667777777777777766432 322 12223556777777777777777
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHH
Q 004813 467 QVSAQSLVL---DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC-----------SLS---SSSFNILIYGLCVMRKVD 529 (729)
Q Consensus 467 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~ 529 (729)
.+.+..... .......+..++...|++++|..+++.+....- .|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 766543211 123445555566777777777777777765420 011 123344555566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
+|+++++++.... +.+...+..+...+...|++++|++.+++.+...+. +...+...+..+...|++++|..++++++
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666665543 334555666666666666666666666666655322 34444455555666666666666666666
Q ss_pred HCCCCCCHHH
Q 004813 610 KAGLVPDRET 619 (729)
Q Consensus 610 ~~~~~p~~~~ 619 (729)
+ ..|+...
T Consensus 455 ~--~~Pd~~~ 462 (765)
T PRK10049 455 A--REPQDPG 462 (765)
T ss_pred H--hCCCCHH
Confidence 5 3444433
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=3.5e-15 Score=151.93 Aligned_cols=608 Identities=12% Similarity=0.066 Sum_probs=405.1
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
+..+..+|+.+.|.+++..+.++. +.....|..+..+|-..|+.+.+...+-..-..+ |.+...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 444556799999999999999986 6677889999999999999999998887776655 6677999999999999999
Q ss_pred hhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHH
Q 004813 147 VNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY----LLEVLFETNRIESAL 222 (729)
Q Consensus 147 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~~~~~~A~ 222 (729)
+++|.-.|.++++.. +++...+-.-...|.+. |+...|...|.++.....+.|..-+.. .++.+...++-+.|.
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999998875 45555555566778888 999999999999998754333333333 355666778889999
Q ss_pred HHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH--------------------------
Q 004813 223 DQFRRMHKK-GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFY-------------------------- 275 (729)
Q Consensus 223 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------- 275 (729)
+.++..... +-.-+...+++++..+.+...++.+......+.....++|..-|
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999887763 22345567888888899999999999888887662222222211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 276 TCIIPMLCRENKLEEAIRLFKMMRALDL--MPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
--++-++.+.+..+....+...+.+.++ .-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1223334444445555555555555553 33456788889999999999999999999998765566778989999999
Q ss_pred ccCChHHHHHHHHhhcCCCCCC---chHHHHHHHhcCChhHHHHHHHHHHhCCCC---------CcccchHHHHHHHhcC
Q 004813 354 EVGKFDESVNFLEDKCGYVTSP---HNALLECCCNAGKFFLAKCILEKMADRKIA---------DCDSWNIPIRWLCENE 421 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~ 421 (729)
..|..++|.+.++......+.. -..|...+.+.|+.++|.+.++.+...+.. +........+.+.+.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999866655554 455667888999999999999987644422 1222334556677889
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCH-----------------HhHHHHHHHHhhcCCHHHHHHHHH------HHHhCCC
Q 004813 422 EIRKAYELLGRMVVSS-----VVPDC-----------------ATYSAFVLGKCKLCNYEDALRVFR------QVSAQSL 473 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~-----~~p~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~ 473 (729)
+.++-+.+...|+... +-|+. .+...+..+-.+.++......-.. .....+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 9888777777776532 11111 111111222222222111111111 1111122
Q ss_pred CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--
Q 004813 474 VLDS--ISYSKLVEGLCQVEKITEAVEVFCCMSKNGC--SLSS---SSFNILIYGLCVMRKVDKAIRLRSLAYSS-GT-- 543 (729)
Q Consensus 474 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-- 543 (729)
.-+. ..+.-++.++++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|... +.
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 2222 2356677788899999999999988876421 1122 12245566777889999999998888765 11
Q ss_pred -CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 544 -SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 544 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
.--...|+..++.+.+.++-.--.+.+.........-+..............+.+.-|+..|-+.... .||....+.
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl 778 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINL 778 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHH
Confidence 12234566555666655544333444444433322212233333344556778899999988887774 566444333
Q ss_pred HH-HHHh----------ccCChHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 623 LL-HGLA----------DGSQLHLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 623 l~-~~~~----------~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
++ -++. ++-.+-.+...+++..+.... .-...+..++++|-..|-..-|..+|++.++-
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 32 2322 122234566666666665211 13456777999999999999999999999964
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.6e-15 Score=163.09 Aligned_cols=449 Identities=13% Similarity=0.073 Sum_probs=258.8
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 004813 176 IVEEKRGFADFVFVYKEMVKAGIVPNV--DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRV 253 (729)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 253 (729)
..+. |+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|++
T Consensus 44 ~~r~-Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARA-GDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhC-CCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3444 77777777777777652 332 233 66666666677777777777766210 11112222224456666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 254 DDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
++|+++++++.+..+ .+...+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 777777777776543 234555566666777777777777777766643 44444433433343445554577777777
Q ss_pred HHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 004813 334 IVIGLTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNI 412 (729)
Q Consensus 334 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (729)
.+.. |+ ...+ ..+...+.+.|-...|.++..+-...- +...+.-
T Consensus 196 l~~~--P~n~e~~-------------------------------~~~~~~l~~~~~~~~a~~l~~~~p~~f--~~~~~~~ 240 (822)
T PRK14574 196 VRLA--PTSEEVL-------------------------------KNHLEILQRNRIVEPALRLAKENPNLV--SAEHYRQ 240 (822)
T ss_pred HHhC--CCCHHHH-------------------------------HHHHHHHHHcCCcHHHHHHHHhCcccc--CHHHHHH
Confidence 6643 43 3333 555566666676666666555422110 1111000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCH-HH----HHHHHHH
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQ-SLVLDS-IS----YSKLVEG 486 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~ 486 (729)
+ +.+.|.+..+. +..++..- . .+.--.+.|..-++.+... +..|.. .. ..-.+-+
T Consensus 241 l--------~~~~~a~~vr~----a~~~~~~~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 241 L--------ERDAAAEQVRM----AVLPTRSE-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred H--------HHHHHHHHHhh----cccccccc-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 0 01111111111 11110000 0 0000134444444444431 111211 11 1223445
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHHhcC
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-----SYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 561 (729)
+...|++.++++.++.+...+.+....+-..+.++|...+++++|..+|+.+..... .++......|.-++...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 666778888888888887776555566777778888888888888888887765431 223333466777788888
Q ss_pred ChhHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGC-------------ALDVE-AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL 627 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (729)
++++|..+++++.+..+ .||-. .+..++..+...|++.+|.+.++++.... +-|......+...+
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~ 460 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIY 460 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88888888888876321 12222 23344566777888888888888887652 33667777888888
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
...|...+|++.++..... .+.+..+....+..+...|+|++|..+.+.+.+. .|+....
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 461 LARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 8888888888888766665 4556667777888888888888888888877763 4655443
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=1.4e-13 Score=134.88 Aligned_cols=575 Identities=13% Similarity=0.080 Sum_probs=313.5
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH--
Q 004813 74 NDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM-- 151 (729)
Q Consensus 74 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-- 151 (729)
++...|..+++.+.+..+. .+..|-.-.+.=-..|++..|..+...--+. ++-+..+|.-.+ +....+.|.
T Consensus 265 ~DikKaR~llKSvretnP~--hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK--HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 4667888888888765432 3333433333344456666666555443332 233333333322 122222233
Q ss_pred -----------------------------HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 004813 152 -----------------------------RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNV 202 (729)
Q Consensus 152 -----------------------------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 202 (729)
+++.+..+. ++.++..|-..+ .. .+.+.|.-++.+..+- ++.+.
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----el-E~~~darilL~rAvec-cp~s~ 410 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----EL-EEPEDARILLERAVEC-CPQSM 410 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hc-cChHHHHHHHHHHHHh-ccchH
Confidence 333333332 233333333222 22 4444455566655553 22223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHhHHHH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMF----DLGIQLELSFYTCI 278 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l 278 (729)
..| .+|.+..-++.|..+++...+. ++.+..+|.+....--.+|+.+...+++++-. ..|+..+...|-.=
T Consensus 411 dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 411 DLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 322 3444555566677777666653 45566666665555566666666666665543 34666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 004813 279 IPMLCRENKLEEAIRLFKMMRALDLMP--DELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVG 356 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 356 (729)
...+-+.|..-.+..+.......|+.- -..||..-...|.+.+.++-|..+|...++- .+-+...+......--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 666666666666666666666555432 2345666666666777777777776666552 1222333433333334455
Q ss_pred ChHHHHHHHHhhcCCCC---CCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 357 KFDESVNFLEDKCGYVT---SPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 357 ~~~~a~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
..++...+|++.....+ ..|-.....+-..|++..|..++...-+..+.+..+|-.-+.....+.+++.|..+|.+.
T Consensus 565 t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 56665555555333222 234444444555566666666666666665556666666666666666666666666665
Q ss_pred HHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 434 VVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSS 513 (729)
Q Consensus 434 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 513 (729)
... .|+...|..-++.---.++.++|.+++++.++. +..-...|..+.+.+-+.++++.|.+.|..-.+. ++..+.
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 543 445555555444445556666666666666654 2223345555666666666666666666554443 233455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS 593 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (729)
.|-.|...--+.|++-+|..++++..-.+ +.+...|...|+.-.+.|+.+.|..+..+.++. +.-+...|.--|....
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 56555555556666666666666665554 445566666666666666666666666666554 2224445555554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 594 EQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
+.++-...... +.+ ..-|..+...+...+-...++++|++.|.+..+. .+..-.+|..+...+.++|.-++-.+
T Consensus 799 ~~~rkTks~DA---Lkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~-d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 799 RPQRKTKSIDA---LKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK-DPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred CcccchHHHHH---HHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCccchHHHHHHHHHHHhCCHHHHHH
Confidence 44442222222 222 2334555555566666666667777777766665 24445566666666666666666666
Q ss_pred HHHHHHh
Q 004813 674 LLDLMLG 680 (729)
Q Consensus 674 ~~~~~~~ 680 (729)
++.....
T Consensus 873 v~~~c~~ 879 (913)
T KOG0495|consen 873 VLKKCET 879 (913)
T ss_pred HHHHHhc
Confidence 6665553
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=9.1e-15 Score=157.35 Aligned_cols=202 Identities=8% Similarity=-0.039 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQS-----LVLDSISYSKLVEGL 487 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~ 487 (729)
.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+.... ..++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 345566677777777777777777655444566677777777777777777777776532 122333346677777
Q ss_pred HccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 004813 488 CQVEKITEAVEVFCCMSKNGC-----------SLS---SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKI 553 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 553 (729)
...+++++|..+++++.+... .|+ ...+..++..+...|+..+|++.++++.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 777788888777777766210 011 1122334555666677777777777776554 4556666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
...+...|.+.+|++.++......+. +..+....+.++...+++.+|..+.+.+.+. .|+..
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 77777777777777777655554322 4455556666666677777777777766663 44443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4.1e-15 Score=138.17 Aligned_cols=436 Identities=13% Similarity=0.128 Sum_probs=267.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--Chh-hHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh
Q 004813 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHY--RVN-GAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF 183 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (729)
..+|...++--+|+.|...|++.+..+-..|++.-+-.+ ++- .-.+.|-.|...| ..+..+| +. |+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~-G~v 195 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KS-GAV 195 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cc-ccH
Confidence 345666666666777766666666655555544332222 221 1233344444333 1122222 11 322
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 184 ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEM 263 (729)
Q Consensus 184 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 263 (729)
|. ++-+.. +.+..+|.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|
T Consensus 196 --Ad-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EM 264 (625)
T KOG4422|consen 196 --AD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEM 264 (625)
T ss_pred --HH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHH
Confidence 22 222222 446778888888888888888888888888877777788888888876543322 7788888
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHc--
Q 004813 264 FDLGIQLELSFYTCIIPMLCRENKLEEA----IRLFKMMRALDLMPDELTYEELINCLCENLRLDD-ANDILEDMIVI-- 336 (729)
Q Consensus 264 ~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~-- 336 (729)
....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 8888888888888888888888877654 4566788888888888888888888888777644 44444554431
Q ss_pred --C---CCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCC------C
Q 004813 337 --G---LTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRK------I 404 (729)
Q Consensus 337 --~---~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 404 (729)
. +.|+ ...|...+..|....+.+-| .++-.-..... .
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA-------------------------------~~v~~ll~tg~N~~~ig~ 393 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELA-------------------------------YQVHGLLKTGDNWKFIGP 393 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHH-------------------------------HHHHHHHHcCCchhhcCh
Confidence 1 2232 33444444444444444444 33333222111 1
Q ss_pred C--CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 405 A--DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSK 482 (729)
Q Consensus 405 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (729)
. ...-|..+....|+....+.....|+.|.-+-.-|+..+...++.+..-.+.++-..++|.++...|.........-
T Consensus 394 ~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee 473 (625)
T KOG4422|consen 394 DQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE 473 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 22345566777888888999999999998888888999999999998888999999999998888765433333333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGCSLSSS---SFNILIYGLCVMRKVDKA-IRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
++..++ .....|+.. -+.....-|+ -++.++ ...-.++.+. .......+.++-.+.
T Consensus 474 il~~L~----------------~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 474 ILMLLA----------------RDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHh----------------cCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHH
Confidence 333333 222222222 1222111111 112222 1222344443 344455666677788
Q ss_pred hcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004813 559 KLQRAKDLLVVLAQMLVEGC----ALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV 614 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 614 (729)
+.|+.++|.+++.-+.+.+- .|......-+++.-.+.++..+|..+++-|...+..
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 88999999999988866532 234444445666677778888888888888765443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=6.2e-14 Score=143.01 Aligned_cols=578 Identities=13% Similarity=0.094 Sum_probs=324.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHh
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVE 178 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (729)
.-..+..+...|++++|..++.+++++. |.....|..|...|-.+|+.+++...+-.+...+ +-|...|..+-....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3334445556699999999999999997 7788999999999999999999999887776654 5566788888888888
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCChh
Q 004813 179 EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFE----IVIKGLIANSRVD 254 (729)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~ 254 (729)
. |+++.|.-+|.+.++.. +++...+---+..|-+.|+...|.+-|.++.....+.|..-+. ..++.+...++-+
T Consensus 220 ~-~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 L-GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred c-ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 7 99999999999999875 4455555556778889999999999999998863322322222 3456677778889
Q ss_pred HHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH----------------------H
Q 004813 255 DSVSILGEMFDL-GIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTY----------------------E 311 (729)
Q Consensus 255 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----------------------~ 311 (729)
.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-| .
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999988888752 23455667888999999999999999988877763222222211 1
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHccCChHHHHHHHHhhcCC----CCCCchHHHH
Q 004813 312 ----ELINCLCENLRLDDANDILEDMIVIGLTP--TDDVFVDIVRGLCEVGKFDESVNFLEDKCGY----VTSPHNALLE 381 (729)
Q Consensus 312 ----~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~----~~~~~~~l~~ 381 (729)
-+.-++......+....+...+.+..+.| +...|..+..++.+.|++.+|.++|...... +..+|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 11222333333344444444444444222 3444555555566666666665555542221 1224555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHhHHHHHHHHh
Q 004813 382 CCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV--------SSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~ll~~~~ 453 (729)
+|...|.+++|.+.++......+.+...-..|...+.+.|+.++|.+.++.+.. .+..|+..........+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 555555555555555555555554444445555555555555555555555421 112222222223333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 454 KLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
+.|+.++-..+-..|.... ....++. -+..++... .....+.+........++.+-.+.++.....+
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 604 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDF------LKKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEK 604 (895)
T ss_pred HhhhHHHHHHHHHHHHHHH------HHHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhh
Confidence 4444444333333322210 0000000 000000000 00000011112222223333333333221111
Q ss_pred HH------HHHHHcCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCCHHH
Q 004813 534 LR------SLAYSSGTSYTT--STYTKIMLGLVKLQRAKDLLVVLAQMLVEGC--ALDV---EAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 534 ~~------~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~ 600 (729)
-. ......++..+. ..+..++..+++.+++++|+.+...+..... .++. ..=...+.+....+++..
T Consensus 605 ~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 605 ALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred cccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 11 111112222221 2345566778888888888888887776421 1111 112334556677888888
Q ss_pred HHHHHHHHHHC-CCC--CC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 601 CALFFNVMVKA-GLV--PD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 601 A~~~~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
|...++.|+.. +.. |. ...|+..++...+.++-.--...+..+.......++..+......+..+|.+..|+..+-
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ 764 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYM 764 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHH
Confidence 88888888865 221 22 234444445555555544444444444433222223333344455667788888888877
Q ss_pred HHHhCCCCCCHHHHHHHHh
Q 004813 677 LMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 677 ~~~~~g~~p~~~~~~~ll~ 695 (729)
+.... .||....+..|.
T Consensus 765 ra~~~--~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 765 RAFRQ--NPDSPLINLCLG 781 (895)
T ss_pred HHHHh--CCCCcHHHHHHH
Confidence 77664 577555444443
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=4.1e-13 Score=131.70 Aligned_cols=569 Identities=10% Similarity=0.020 Sum_probs=409.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHH------------HHHHHH
Q 004813 110 GNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNV------------VLGAIV 177 (729)
Q Consensus 110 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------ll~~~~ 177 (729)
++...|..++....+.+ |.++..|.+-.+.=-..|++..|..+..+--+. .+.+...|.. ++.-.+
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 56788999999999887 555566666665556667777776666544222 1222222221 111111
Q ss_pred hc--------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 004813 178 EE--------------KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIV 243 (729)
Q Consensus 178 ~~--------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 243 (729)
+. ..+...=.+++.+..+. ++.++..|-. .+.....++|.-++.+..+- ++.+. -|
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~----dL 412 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSM----DL 412 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchH----HH
Confidence 10 01122223344444443 2334444433 33445556677777777663 22222 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHhhHHHHHHHHHh
Q 004813 244 IKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKM----MRALDLMPDELTYEELINCLCE 319 (729)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~~~~~ 319 (729)
.-++++..-++.|..+++...+. ++.+..+|.+-...--.+|+.+...+++++ +...|+..+...|-.=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44667777888899998888773 556777887777777788888888888754 4456787888888888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHhhcCC---CCCCchHHHHHHHhcCChhHHHH
Q 004813 320 NLRLDDANDILEDMIVIGLTPT--DDVFVDIVRGLCEVGKFDESVNFLEDKCGY---VTSPHNALLECCCNAGKFFLAKC 394 (729)
Q Consensus 320 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 394 (729)
.|..-.+..+....+.-|+.-. ..|+..-...|.+.+.++-++.+|...... ..+.|......--..|..++...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888877766433 457777788888999999888888765443 34457777766777888999999
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 004813 395 ILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV 474 (729)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 474 (729)
+|++....-+.....|......+-..|+...|..++....+.... +...|...+..-.....++.|..+|...... .
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 999988887767778888888888889999999999998887544 6677777778888888999999999888764 4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIM 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 554 (729)
|+...|.--+....-.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|...|..-.+. ++..+..|..|.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 56667666666666678999999999998885 2334557788888888889999988887765544 345567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLH 634 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (729)
..-.+.|..-.|..++++..-++++ +...|-..|+.-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccch
Confidence 8888888999999999999888776 8888999999999999999999998888875 4445667777777777777766
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHhhhhhcchhhh
Q 004813 635 LVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA-TTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 705 (729)
.....+++. .-|+.+.-.+...+....++++|.++|++.... .||. .+|.-+..-....|..+.
T Consensus 805 ks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 805 KSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHH
Confidence 666665544 347788889999999999999999999999974 5665 456777777777775443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.9e-14 Score=130.63 Aligned_cols=449 Identities=16% Similarity=0.163 Sum_probs=254.5
Q ss_pred ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHH-HHHHHHHHHHhCCCCCChhhH
Q 004813 164 LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLF--ETNRIE-SALDQFRRMHKKGCCPNSRTF 240 (729)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~~~~~-~A~~~~~~m~~~~~~p~~~~~ 240 (729)
..+.+=|.|+..... |....+--+|+.|...|++.+...-..|...-+ ...++- .-.+.|-.|...|- .+..+|
T Consensus 114 ~~V~~E~nL~kmIS~--~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW 190 (625)
T KOG4422|consen 114 LQVETENNLLKMISS--REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW 190 (625)
T ss_pred hhhcchhHHHHHHhh--cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc
Confidence 344566777776654 788999999999999988877776666555433 222322 22344555555442 233444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004813 241 EIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCEN 320 (729)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 320 (729)
+.|++.+ -+++. .+-+..+|..+|.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 191 --------K~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 --------KSGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred --------ccccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3344333 22222 23456789999999999999999999999998887788999999998875533
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHH
Q 004813 321 LRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMA 400 (729)
Q Consensus 321 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 400 (729)
. ..+++.+|....+.||..|+ |+++.+..+.|+++.|..
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~Tf-------------------------------NalL~c~akfg~F~~ar~------ 294 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTF-------------------------------NALLSCAAKFGKFEDARK------ 294 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhH-------------------------------HHHHHHHHHhcchHHHHH------
Confidence 3 27888999999999999999 666666666666554432
Q ss_pred hCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHH-HHHHHHHHHh----CCCC-
Q 004813 401 DRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYED-ALRVFRQVSA----QSLV- 474 (729)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~- 474 (729)
.|.+++.+|++-|+.|...+|..++..+++.++..+ +..+..++.. ..++
T Consensus 295 ------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 295 ------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred ------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 234445555555555555555555555555554432 2222222221 1111
Q ss_pred ---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004813 475 ---LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG----CSLS---SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544 (729)
Q Consensus 475 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 544 (729)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 133344444555555555555555444332210 1111 122344445555555555555556555555555
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------------------CHHHHHH-
Q 004813 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN--------------------KLKDCAL- 603 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--------------------~~~~A~~- 603 (729)
|+..+...++++....+.++-.-++|..+...|...+...-.-++..+++.. ++.++-+
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555443333332222222222222 1111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-CCCCHHhHH---HHHHHHHhcCChhHHHHHHHHHH
Q 004813 604 FFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-EVLDSSMYN---ILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
--.+|.+ ..-.....+.++-.+.+.|+.++|.+++..+...+ --|-....| .+.+.-.+.++...|...++-|.
T Consensus 511 ~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1122332 23334455666667788888888888888885542 223333344 55666667788888888888887
Q ss_pred hCCCCCCHHHHHHHHhhh
Q 004813 680 GKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 680 ~~g~~p~~~~~~~ll~~~ 697 (729)
..++..-....+-+...|
T Consensus 589 ~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 589 AFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HcCchhhhHHHHHHHHhc
Confidence 665443333334444444
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3.8e-14 Score=132.71 Aligned_cols=280 Identities=9% Similarity=0.002 Sum_probs=205.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCC--CcccchHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCC
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIA--DCDSWNIPIRWLCENE-EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCN 457 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 457 (729)
..|.+.|+++.|.++++-..+.+-. +...-|.-+--|.+.| ++..|.+.-+..+... .-+....+.-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3477889999999998888777543 2222232233333333 5666666666554322 1222222222333456789
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSL 537 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (729)
+++|.+.+++.+..........|+ +.-.+-..|++++|++.|-++... +..+..+...+...|-...+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998764332333333 333466789999999999888653 234677777888889999999999999887
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004813 538 AYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR 617 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 617 (729)
.... ++.|+.....|...|-+.|+..+|.+.+-+--+. +..+..+...|...|....-+++++.+|++..- ++|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 7654 4677888999999999999999998876655443 445788888888888888889999999998765 78999
Q ss_pred HHHHHHHH-HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 618 ETMLSLLH-GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 618 ~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
.-|..++. ++.+.|++.+|.++++....+ ++.|..++..|++.+...|..
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 99988776 456789999999999999888 888999999999999888853
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4e-15 Score=139.11 Aligned_cols=482 Identities=12% Similarity=0.044 Sum_probs=303.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhHHHHH
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI-VIKGLIANSRVDDSVSILGEMFDLGIQLE----LSFYTCII 279 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li 279 (729)
...|..-|.......+|+..|+-+.+....|+...... +...+.+...+.+|+++++...+.-+..+ ..+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33445556566667788888888877777777654332 34556677788888888887765422222 22344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhH------------HH
Q 004813 280 PMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVF------------VD 347 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------~~ 347 (729)
..+.+.|+++.|+.-|+...+.. ||..+-..|+-++..-|+-++..+.|.+|+.-...||..-| +.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 56778888999988888877653 77776666666666778888888888888764433443322 11
Q ss_pred HHH-----HHHccCChHHHHHHHH-hhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcC
Q 004813 348 IVR-----GLCEVGKFDESVNFLE-DKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENE 421 (729)
Q Consensus 348 l~~-----~~~~~~~~~~a~~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (729)
.+. -..+.+ -..|.+.+- ...-..+..-.....+ .+-..+.++.-....+ -...--.-..-+.++|
T Consensus 362 ai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g------~dwcle~lk~s~~~~l-a~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 362 AIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAG------CDWCLESLKASQHAEL-AIDLEINKAGELLKNG 433 (840)
T ss_pred HHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcc------cHHHHHHHHHhhhhhh-hhhhhhhHHHHHHhcc
Confidence 111 000000 000111000 0000000000000000 0111111111110000 0000111233477899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHH--HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAF--VLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
+++.|+++++-+.+..-+.-+..-+.| +.....-.++..|.++-+......- -+......-.+.-..+|++++|.+.
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999999988765433222222222 2222223457777777776654321 1333333333344568999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA 579 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 579 (729)
+++.+...-.-....||. .-.+-..|++++|+..|-++... +..+......+...|....+..+|++++.+.... +.
T Consensus 513 ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 999987532222333332 33456789999999999887543 2456667777888899999999999999887655 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 580 LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 580 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
-|+....-|.+.|-+.|+-.+|.+.+-+-.+. ++.+..+...|..-|....-+++++.+|++..- +.|+.+-|..|+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 47888999999999999999999987766553 555778888888888888889999999999875 689999999877
Q ss_pred H-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhh
Q 004813 660 N-GLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDS 704 (729)
Q Consensus 660 ~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~ 704 (729)
. ++.+.|++.+|+++++...+. ++-|......|++.|...|..+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 5 455779999999999999875 7778888999999987666543
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-12 Score=122.90 Aligned_cols=477 Identities=10% Similarity=0.051 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA 175 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (729)
...|-...+.=..++++..|..+|++.++.+ ..+...|..-+..=.+...+..|..++++....-...|.. |-..+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHH
Confidence 3334333344444555666666666666554 3445555556666666666666666666665432122222 2222222
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 004813 176 IVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDD 255 (729)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 255 (729)
--.. |+...|.++|++..+ ..|+..+|++.|+.=.+.+.++.|..++++..-- .|++.+|-...+.-.+.|+...
T Consensus 151 EE~L-gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEML-GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHh-cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 2233 666666666666654 3566666666666666666666666666665532 3566666555555555666666
Q ss_pred HHHHHHHHHHC-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 256 SVSILGEMFDL-GI-QLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 256 a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
+..+|+...+. |- ..+...+.+....-.++.. ++.|.-+|+-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE-----------------------------------~ERar~iykyA 270 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE-----------------------------------YERARFIYKYA 270 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHH
Confidence 66666555431 10 0112223333333333334 44444444444
Q ss_pred HHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 004813 334 IVIGLTPT--DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWN 411 (729)
Q Consensus 334 ~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (729)
+.. ++.+ ...|..+..---+-|+.....+.. + . .-.--++.+...++.|-.+|-
T Consensus 271 ld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I--------------v----~-----KRk~qYE~~v~~np~nYDsWf 326 (677)
T KOG1915|consen 271 LDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI--------------V----G-----KRKFQYEKEVSKNPYNYDSWF 326 (677)
T ss_pred HHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH--------------h----h-----hhhhHHHHHHHhCCCCchHHH
Confidence 332 1111 111211111111111111111000 0 0 001124555566655777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H------hHHHHHHHH---hhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDC-A------TYSAFVLGK---CKLCNYEDALRVFRQVSAQSLVLDSISYS 481 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (729)
..+......|+.+...++|++...+ ++|-. . .|..+=.+| ....+++.+.++++..++. ++....||.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 7777777778888888888888765 33321 1 111111122 2457788888888888774 333444444
Q ss_pred HHH----HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 004813 482 KLV----EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGL 557 (729)
Q Consensus 482 ~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 557 (729)
-+- ..-.+..++..|.+++..++. .-|...+|...|..-.+.++++....+|++.++-+ +-+..+|......-
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 433 333467788888888888764 46888888888888888888888888888888775 45677887777777
Q ss_pred HhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccC
Q 004813 558 VKLQRAKDLLVVLAQMLVEG-CALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA-----DGS 631 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g 631 (729)
...|+.+.|..+|.-.++.. .......|...|+.-...|.+++|..+|+++++. .+...+|.++..--. ..+
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccc
Confidence 78888888888888877652 2223456777777777888888898888888875 233345555544322 223
Q ss_pred -----------ChHHHHHHHHHHHh
Q 004813 632 -----------QLHLVSSGINKLVS 645 (729)
Q Consensus 632 -----------~~~~A~~~~~~~~~ 645 (729)
+...|.++|+++..
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHH
Confidence 45567777776654
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.2e-11 Score=117.15 Aligned_cols=466 Identities=10% Similarity=0.037 Sum_probs=316.1
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
.+++.+.|..+|+++...+ ..+...|-..+..=.+++.+..|..++++.+..- |--...|...+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 4678899999999998765 4556678888888999999999999999998764 445667777777777899999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
++|++..+ ..|+...|++.+..-.+. ...+.|..++++.+- +.|++.+|--....=.+.|+...|..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRy-keieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRY-KEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999977 479999999999999999 999999999999986 4799999999888888999999999999998774
Q ss_pred -CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 004813 232 -GC-CPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE-LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDEL 308 (729)
Q Consensus 232 -~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 308 (729)
|- .-+...+.+....-.++..++.|.-+|.-..+.-+... ...|..+...--+.|+.....+..
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I------------- 303 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI------------- 303 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH-------------
Confidence 21 11122333333333456678888888877776422110 112222222111222221111110
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCC
Q 004813 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGK 388 (729)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~ 388 (729)
++ +-.--|+++++.+ +-|-.++-.. ++.....|+
T Consensus 304 v~--------------KRk~qYE~~v~~n-p~nYDsWfdy-------------------------------lrL~e~~g~ 337 (677)
T KOG1915|consen 304 VG--------------KRKFQYEKEVSKN-PYNYDSWFDY-------------------------------LRLEESVGD 337 (677)
T ss_pred hh--------------hhhhHHHHHHHhC-CCCchHHHHH-------------------------------HHHHHhcCC
Confidence 00 0001134444432 3455666333 344444455
Q ss_pred hhHHHHHHHHHHhCCCC--CcccchHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh----h
Q 004813 389 FFLAKCILEKMADRKIA--DCDSWNIPIRW--------LCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC----K 454 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~----~ 454 (729)
.+...++|++....-++ ....|.-.|.. -....+.+.+.++|...++. ++-..+||..+--.|+ +
T Consensus 338 ~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 338 KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHH
Confidence 55555555555554443 22222222211 12356788888888888774 3445566665544443 5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 534 (729)
+.++..|.+++...+. ..|-..+|...|..=.+.+++|.+..++++.++.+ +-+..+|......-...|+.+.|..+
T Consensus 417 q~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 6788889988887764 46777888888888888899999999999998865 44777888887777888999999999
Q ss_pred HHHHHHcC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------C
Q 004813 535 RSLAYSSG-TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-----EQN-----------K 597 (729)
Q Consensus 535 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~~-----------~ 597 (729)
|+.+.+.. +......|.+.|+--...|.++.|..+|+.+++. .+...+|.++...-. ..+ +
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 99888643 2223456667777777889999999999999886 344556666554333 233 4
Q ss_pred HHHHHHHHHHHHH
Q 004813 598 LKDCALFFNVMVK 610 (729)
Q Consensus 598 ~~~A~~~~~~~~~ 610 (729)
...|..+|++...
T Consensus 572 ~~~AR~iferAn~ 584 (677)
T KOG1915|consen 572 IKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHH
Confidence 5567777776654
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=2.4e-14 Score=145.00 Aligned_cols=577 Identities=13% Similarity=0.034 Sum_probs=337.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHh
Q 004813 89 QKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDV 168 (729)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 168 (729)
..|..|+..+|..++.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|.+.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 3567888899999999999999999998 8888888888888999999999998888887775 688899
Q ss_pred HHHHHHHHHhcCCChhHHHHH---HHHHH----HCCCCCC-HHHH-------------HHHHHHHHhcCCHHHHHHHHHH
Q 004813 169 FNVVLGAIVEEKRGFADFVFV---YKEMV----KAGIVPN-VDTL-------------NYLLEVLFETNRIESALDQFRR 227 (729)
Q Consensus 169 ~~~ll~~~~~~~~~~~~a~~~---~~~~~----~~g~~~~-~~~~-------------~~li~~~~~~~~~~~A~~~~~~ 227 (729)
|..|+.+|.+. ||......+ ++.+. ..|+.-. ...+ ...+......|-++.+++++..
T Consensus 86 yt~Ll~ayr~h-GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 86 YTNLLKAYRIH-GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 887653332 22222 2232111 1111 1223334445666666666665
Q ss_pred HHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004813 228 MHKKG-CCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPD 306 (729)
Q Consensus 228 m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 306 (729)
+.... ..|.. ..++-+.. +..-.+++........-.|+..+|..+++.-.-.|+++.|..++.+|++.|++.+
T Consensus 165 ~Pvsa~~~p~~----vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAWNAPFQ----VFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCcccccchHH----HHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 54321 11111 12433332 2333444444444332258999999999999999999999999999999999878
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhc
Q 004813 307 ELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNA 386 (729)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~ 386 (729)
.+-|..|+-+ .++...++.+++-|.+.|+.|+..|+...+..+...|....+.+............+..+.++....
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 8777777755 7888889999999999999999999998888888755533333322221111111112222211111
Q ss_pred CChh-----HHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHhhcCC
Q 004813 387 GKFF-----LAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSS---VVPDCATYSAFVLGKCKLCN 457 (729)
Q Consensus 387 ~~~~-----~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~ 457 (729)
..++ -....+.+..-.|.. ...+|.... -...+|.-++..++...|..-. -..+...|..++.-|.+.-.
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 1111 111112222222333 223333222 2233677777777766664221 11133345555555544332
Q ss_pred HHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-------CCHHHHHHHHHHHHh
Q 004813 458 YEDALRVFR--QVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK----NGCS-------LSSSSFNILIYGLCV 524 (729)
Q Consensus 458 ~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-------~~~~~~~~l~~~~~~ 524 (729)
......++. +..... .+....-.+.....+. +...+.+-+..+.. +.+. +-...-+.++..+++
T Consensus 395 ~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred hhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 222222221 111110 0011111111111110 11111111111111 0011 111233556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE--GCALDVEAYCILIQSMSEQNKLKDCA 602 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~ 602 (729)
.-+..+++..-++....-+ + ..|..|++-+...++.+.|..+.++.... .+..|..-+..+.+.+.+.+....+.
T Consensus 472 e~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 6666666654444333211 2 56788888888888888888888887654 33446666778888888888888888
Q ss_pred HHHHHHHHC-CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 603 LFFNVMVKA-GLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 603 ~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+++++.+. -..|+ ..++..++...+..|+.+...++++-+...|+..+ .-++....+.++...|.++.+.-.+
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHH
Confidence 888888774 12222 34455566666778888888888877777665442 3344556677888888888777665
Q ss_pred CCCCCCHHHHHHHHhhhhh
Q 004813 681 KGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 681 ~g~~p~~~~~~~ll~~~~~ 699 (729)
. ++|.......+.+.+.+
T Consensus 625 k-yk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 625 K-YKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred H-hcCChHHHHHHHHHHHh
Confidence 4 67777776666666653
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=2.1e-13 Score=138.41 Aligned_cols=512 Identities=15% Similarity=0.074 Sum_probs=269.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004813 117 GLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
.++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.....|+.++.+..+. ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC---------
Confidence 35566777888999999999999999999999998 888887777788888899998888877 7766555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHhH
Q 004813 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMF-DLGIQLELSFY 275 (729)
Q Consensus 197 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 275 (729)
.|-..+|..|..+|...|++.. ++..++ ..-.++..+...|.......++..+. ..+..||...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5778899999999999998766 222222 11122333444444444444443322 2223333322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 276 TCIIPMLCRENKLEEAIRLFKMMRALDL-MPDELTYEELINCLCENL-RLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
.+....-.|-++.+++++..+....- .|-.+ .++-+.... .+++-..+.+...+ .|+..+|
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l-------- 207 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETL-------- 207 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHH--------
Confidence 23333444555555555544432210 01111 122222211 12222222222222 3566666
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGR 432 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 432 (729)
.++++.-...|+.+.|..++.+|.+.|.+ +..-|..++-+ .++..-+..+++.
T Consensus 208 -----------------------~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 208 -----------------------HAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRG 261 (1088)
T ss_pred -----------------------HHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHH
Confidence 66666666667777777777777777776 55555555444 5666666677777
Q ss_pred HHHCCCCCCHHhHHHHHHHHhhcCCHHH------------------------HHHHHHH------------HHhCCCCCC
Q 004813 433 MVVSSVVPDCATYSAFVLGKCKLCNYED------------------------ALRVFRQ------------VSAQSLVLD 476 (729)
Q Consensus 433 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~------------------------a~~~~~~------------~~~~~~~~~ 476 (729)
|.+.|+.|+..|+...+..+...|.... |.+.++. ..-.|+...
T Consensus 262 mqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~ 341 (1088)
T KOG4318|consen 262 MQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDIL 341 (1088)
T ss_pred HHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccc
Confidence 7777777777777665555544222110 1111111 001122222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCCH------HHHHH-------------H
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNG--CSL-SSSSFNILIYGLCVMRKV------DKAIR-------------L 534 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~------~~A~~-------------~ 534 (729)
..+|...+.. ...|.-++..++...+..-- +.+ ++..|..++.-|.+.-+. ..|.+ +
T Consensus 342 ~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~v 420 (1088)
T KOG4318|consen 342 EAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRV 420 (1088)
T ss_pred hHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHH
Confidence 3333333322 22566666666666554311 112 223343333333321110 00000 0
Q ss_pred HHHHHHcCCCCCHH----------------------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004813 535 RSLAYSSGTSYTTS----------------------------TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC 586 (729)
Q Consensus 535 ~~~~~~~~~~~~~~----------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 586 (729)
-+.+.. ..||.. .-+.++..|++.-+..+++..-++....-+ ...|.
T Consensus 421 sell~~--lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya 495 (1088)
T KOG4318|consen 421 SELLEN--LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYA 495 (1088)
T ss_pred HHHHHH--hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHH
Confidence 000000 011110 112333334444344444433333222111 14566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKA--GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILINGL 662 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~ 662 (729)
.||+-+......+.|..+.++.... .+..|...+..+.+.+.+.+....+..+++++.+. +.+....+...+.+..
T Consensus 496 ~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~ 575 (1088)
T KOG4318|consen 496 LLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSG 575 (1088)
T ss_pred HHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhh
Confidence 7777777777777777777766543 23445555666777777777777777777777664 2222234455666677
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhh
Q 004813 663 WKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRF 707 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 707 (729)
...|+.+.-.++.+-+...|+.-+ ..++....+.++...+.
T Consensus 576 a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 576 APAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 777777777777776666665432 44445555555544443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.3e-11 Score=113.26 Aligned_cols=310 Identities=13% Similarity=0.029 Sum_probs=233.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHhhcC
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSV--VPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~ 456 (729)
..++....+.+++..-.+.....|.+ +...-+....+.-...++++|+.+|+++.++.+ --|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34455555667777777777777766 444445555566677888899999998887742 126677777765432221
Q ss_pred CH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 457 NY-EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535 (729)
Q Consensus 457 ~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 535 (729)
.. --|..+++ +.+ + -+.|...+.+.|.-.++.++|..+|+..++.+ +.....|+.+.+-|...++...|++-+
T Consensus 314 kLs~LA~~v~~-idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVSN-IDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-hcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 11222221 111 2 34577788888999999999999999999865 445678899999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 536 SLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP 615 (729)
Q Consensus 536 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 615 (729)
+.+.+.. +.|-..|-.|.++|.-.+.+.-|+-.|++..+..+. |...|.+|.++|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999876 678889999999999999999999999999987554 88999999999999999999999999999864 33
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVLD--SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
+...+..|...|.+.++.++|.+.+++.++. |...+ ....--|..-+.+.+++++|..+....... .+.-.-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHH
Confidence 6688999999999999999999999888774 33333 223334778888999999999888777653 677677
Q ss_pred HHHHHhhhhhc
Q 004813 690 HGLLVGSSVGE 700 (729)
Q Consensus 690 ~~~ll~~~~~~ 700 (729)
-+.|++.+++.
T Consensus 543 ak~LlReir~~ 553 (559)
T KOG1155|consen 543 AKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHh
Confidence 78888777654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=2.2e-12 Score=131.68 Aligned_cols=293 Identities=11% Similarity=-0.022 Sum_probs=197.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHH
Q 004813 384 CNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALR 463 (729)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 463 (729)
...|+++.|.+.+.+..+..+.+...+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45688888888888776665434444455566677788999999999888765323222233334666778888999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 004813 464 VFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFN-ILIYGL---CVMRKVDKAIRLRSLAY 539 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~A~~~~~~~~ 539 (729)
.++.+.+..+. ++..+..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..++..+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99988887654 6677888888888999999999999998887643 333221 111111 22222233333444444
Q ss_pred HcCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 540 SSGT---SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAY-CILIQSMSEQNKLKDCALFFNVMVKAGLVP 615 (729)
Q Consensus 540 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 615 (729)
+... +.+...+..+...+...|+.++|.+.+++..+..+......+ ..........++.+.+.+.+++..+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 4321 236778888888888999999999999988886433221111 11112223457778888888887764 34
Q ss_pred C-H--HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 616 D-R--ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 616 ~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+ . ....++.+.|.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 3 456688888889999999999998544333467888888899999999999999988887643
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=3.9e-09 Score=104.26 Aligned_cols=551 Identities=10% Similarity=0.056 Sum_probs=295.1
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
++.+..+++.......|+.+...-+.......|...+...-..+-++-+.++|++.++.. +..-.--+..++..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccc
Confidence 444556677777777777766553333444566666666666777777777777766543 3335556666677777
Q ss_pred hhhHHHHHHHHHhC------CCcccHHhHHHHHHHHHhcCCChh---HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 004813 147 VNGAMRVLVNMNSG------GFKLSVDVFNVVLGAIVEEKRGFA---DFVFVYKEMVKAGIVPN--VDTLNYLLEVLFET 215 (729)
Q Consensus 147 ~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~ 215 (729)
+++|.+.+..+... ..+.+...|..+...+.+. .+.- .+..++..+... -+| ...|.+|.+.|.+.
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHh
Confidence 77777777766321 1134445566666555554 2111 122333333322 233 23577777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 004813 216 NRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLF 295 (729)
Q Consensus 216 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (729)
|.++.|.++|++.... .-...-|+.+.++|+.-..-.-+..+ +...+.+..+. ..-+++-.+.-|
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~e------------d~~dl~~~~a~~ 326 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEE------------DDVDLELHMARF 326 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChh------------hhhhHHHHHHHH
Confidence 7777777777776653 22444555555555532211111110 00000111000 011222333333
Q ss_pred HHHHhCC-----------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHccCCh
Q 004813 296 KMMRALD-----------LMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPT------DDVFVDIVRGLCEVGKF 358 (729)
Q Consensus 296 ~~m~~~~-----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~ 358 (729)
+.+.... -..++..|..-+. ...|+..+....|.+..+. +.|. ...+..+.+.|...|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3333321 1123334443332 2345566666667666653 2222 12233444444444555
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 004813 359 DESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS- 437 (729)
Q Consensus 359 ~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 437 (729)
+.|+.+|++....+-...+-|.. +|......-.+..+++.|+++++.....-
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~---------------------------vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAE---------------------------VWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHH---------------------------HHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 55555544433333222222222 22222233333444444444444432110
Q ss_pred ----------------CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 438 ----------------VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 438 ----------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
+.-+...|...+..--..|-++....+++.+++..+. ++.........+-...-++++.++++
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0112334555555555667888888899998887665 44443333334445666788888887
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHHhcCChhHHHHHHHHHHH
Q 004813 502 CMSKNGCSLSS-SSFNILIYGLCV---MRKVDKAIRLRSLAYSSGTSYTTSTYTKIM--LGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 502 ~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+-+..--.|+. .+|+..+.-+.+ ...++.|..+|+++++ |.+|...-+--|+ ..-...|-...|+.++++...
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 76554323443 356655544432 2468899999999998 5555443222222 222345778888999988765
Q ss_pred cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCChHHHHHHHHHHHhC-CCC
Q 004813 576 EGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML---SLLHGLADGSQLHLVSSGINKLVSD-SEV 649 (729)
Q Consensus 576 ~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 649 (729)
. +++. ...||+.|.-....=-......+|++.++. -||...-. -+...=.+.|.++.|..++....+. +..
T Consensus 615 ~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 615 A-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 4 3332 346777776544444455667888888874 56654433 3334456789999999999888776 333
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
.+...|++.=..-.++|+-+--.++
T Consensus 692 ~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566788888888899994443333
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=4.8e-15 Score=143.65 Aligned_cols=261 Identities=14% Similarity=0.072 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV 490 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (729)
.+...+.+.|++++|++++++.......|+. ..|..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3355566677777777777554433212333 33333444455567777777777777665443 45555566655 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 491 EKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSG-TSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 491 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
+++++|.+++++..+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777666543 2455566666777777777777777777765432 234556666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV 649 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (729)
+++.++..+. |....+.++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|+..+++..+. .+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 7777776433 46666677777777777777777777666542 334455667777777777777777777777765 35
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.|+.....+++++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 567777777777777777777777766654
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=5.1e-12 Score=128.20 Aligned_cols=284 Identities=10% Similarity=-0.010 Sum_probs=191.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHhhcCCHHHHHH
Q 004813 386 AGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYS--AFVLGKCKLCNYEDALR 463 (729)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 463 (729)
.|+++.|.+.+....+........|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577887777776655442112222333334446788888888888888764 44443322 23456677888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 464 VFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS-------SSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
.++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888877654 6777778888888888888888888888876533222 122233333334445556666666
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD 616 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 616 (729)
.+.+. .+.++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++++..++..+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 65433 2456777777888888888888888888888774 3344222 2333345588888888888887742 224
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677788888888888888888888875 57777878888888888888888888887654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=6.7e-12 Score=127.35 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=129.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHH
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC-------ATYSAFVLGK 452 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~ll~~~ 452 (729)
...+...|+++.|...++++.+..+.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666556666666666666667777777777766665433221 1222223333
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 453 CKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAI 532 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (729)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHH
Confidence 3334455555555555433 2235666666777777777777777777776663 3444222 222333446666666
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 533 RLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.++|++...
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666553 344445566666666666677776666666654 45666666666666666666666666665543
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4e-11 Score=116.47 Aligned_cols=285 Identities=10% Similarity=-0.036 Sum_probs=204.1
Q ss_pred cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004813 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEG 486 (729)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (729)
......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+.-+. ...+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHH
Confidence 3344444555666778888888888877664 334455555566777788877777777777765433 66677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDL 566 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 566 (729)
|...|+..+|.++|.+..... +-=...|-.+.+.|+-.|..++|+..+..+-+.- +-...-+--+..-|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 777888888888888887642 2235678888888888888888888887776542 11111222344557778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHhccCChHHHHHHH
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA--GL---VP-DRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..+.. .+ .+ -..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 8888887765333 6666666666666678888888888877632 11 11 2346788888999999999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhh
Q 004813 641 NKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 699 (729)
++.... .+.+..++.+++-.|...|+++.|.+.|.+.+. +.||..+...+++.+..
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 998887 677888999999999999999999999998885 68988888777776543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-10 Score=110.08 Aligned_cols=309 Identities=13% Similarity=0.116 Sum_probs=162.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHccCC
Q 004813 280 PMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGL--TPTDDVFVDIVRGLCEVGK 357 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~ 357 (729)
.++-...+.+++..-.......|...+...-+....+.....++++|+.+|+++.+... ..|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444556666666666666666544444444444455566677777777777766521 1133444322211111000
Q ss_pred hHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 358 FDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 358 ~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
+. -.|..++ .+.+- -+.|...+.+-|.-.++.++|...|++.++.+
T Consensus 315 Ls------------------------------~LA~~v~-~idKy---R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 315 LS------------------------------YLAQNVS-NIDKY---RPETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred HH------------------------------HHHHHHH-HhccC---CccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 00 0011111 01111 34455555666666666666666666665554
Q ss_pred CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 438 VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 438 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
+. ....|+.+.+-|...++...|.+-++..++-.+. |-..|-.|.++|.-.+...=|+-+|++..+-. +.|...|.+
T Consensus 361 p~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~a 437 (559)
T KOG1155|consen 361 PK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVA 437 (559)
T ss_pred cc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHH
Confidence 22 3445566666666666666666666666665443 55666666666666666666666666666532 335666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCALD--VEAYCILIQS 591 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 591 (729)
|.++|.+.++.++|++.|......| ..+...+..|.+.|-+.++.++|...|++.++. |..-+ ...-..|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 6666666666666666666666554 334456666666666666666666666655542 22211 1122223444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
+.+.+++++|..+...... | .+...--..|++.+.
T Consensus 517 f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~LlReir 551 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLK-G-ETECEEAKALLREIR 551 (559)
T ss_pred HHhhcchHHHHHHHHHHhc-C-CchHHHHHHHHHHHH
Confidence 5566666666655544443 1 334444444444443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2e-11 Score=116.11 Aligned_cols=428 Identities=10% Similarity=0.045 Sum_probs=234.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH
Q 004813 206 NYLLEVLFETNRIESALDQFRRMHKKGCCPN-SRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE-LSFYTCIIPMLC 283 (729)
Q Consensus 206 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 283 (729)
-...+-|.+.|++++|++.|.+.++. .|| +.-|.....+|...|+|+++.+.-....+. .|+ +..+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455678889999999999998874 577 777888888888899999988877777764 343 334555566677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH-cC--CCCCHHhHHHHHHHHHccCChHH
Q 004813 284 RENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV-IG--LTPTDDVFVDIVRGLCEVGKFDE 360 (729)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~--~~p~~~~~~~l~~~~~~~~~~~~ 360 (729)
..|++++|+.=..-..-.+--.|..+- .++.-..+ ..|..-.++-.+ .+ +.|......+....+...-..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~-- 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP-- 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc--
Confidence 777777776432222111110111111 11111111 111111111111 11 334443333333322110000
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHH----h-cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 361 SVNFLEDKCGYVTSPHNALLECCC----N-AGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV 435 (729)
Q Consensus 361 a~~~l~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 435 (729)
............+..++. . ...+..|.+.+.+-...... ...+ +..+.-. +.|
T Consensus 268 ------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~-~~~~----------n~~d~~l---e~~-- 325 (606)
T KOG0547|consen 268 ------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSES-SLSV----------NEIDAEL---EYM-- 325 (606)
T ss_pred ------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhh-hccc----------cccchhH---HHH--
Confidence 000000000011111110 0 01122222222221110000 0000 0000000 000
Q ss_pred CCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004813 436 SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSF 515 (729)
Q Consensus 436 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 515 (729)
..+.......+.-.|+.-.+..-|+..+.....++ ..|--+...|...++.++....|.+....+ +-++.+|
T Consensus 326 ------A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvY 397 (606)
T KOG0547|consen 326 ------AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVY 397 (606)
T ss_pred ------HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchh
Confidence 11111111223345677777777777777654432 225566666777788888888888877754 4466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..-.+.+.-.+++++|..-|++..... +.+...|--+.-+..+.++++++...|++.+++ +.--+..|+.....+...
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhH
Confidence 777777777778888888888877654 344556666666667777888888888887776 333566777778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-------HHHH--HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 004813 596 NKLKDCALFFNVMVKAGLVPD-------RETM--LSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 666 (729)
+++++|.+.|+..++. .|+ ...+ -.++ .+.-.+++..|.+++++.++.+ +.....|.+|+....+.|
T Consensus 476 qqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHh
Confidence 8888888888887763 332 1111 1111 1223478888888888888762 334457888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 004813 667 LTSQASYLLDLMLG 680 (729)
Q Consensus 667 ~~~~A~~~~~~~~~ 680 (729)
+.++|+++|++...
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888887664
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.6e-14 Score=139.96 Aligned_cols=227 Identities=13% Similarity=0.075 Sum_probs=75.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+.......++++.|...++++...+..+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.+
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 3344444445555555555555555444344444444444 4555666666655554433 234444555555566666
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQS-LVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 535 (729)
+++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++..+.. +.|......++..+...|+.+++.+++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 6666666666654322 23355555566666666666666666666666542 223555556666666666666665555
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 536 SLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 536 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
+...+.. +.|+..+..+..++...|++++|+..|++..+..+. |......+.+++...|+.++|.++..++.
T Consensus 204 ~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 204 KRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred HHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5555443 334444555566666666666666666665554322 55555556666666666666666555543
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=9e-13 Score=130.52 Aligned_cols=283 Identities=12% Similarity=0.013 Sum_probs=196.7
Q ss_pred ChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHhhcCCHHHHHHHH
Q 004813 388 KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS--VVPDCATYSAFVLGKCKLCNYEDALRVF 465 (729)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 465 (729)
+..+|...|.++...-.........+..+|...+++++|.++|+.+.+.. ..-+..+|.+.++.+-+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677777877555544344555667777888888888888888876653 12256677777765432 1222222
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004813 466 -RQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT 543 (729)
Q Consensus 466 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 543 (729)
+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+.+-+....++|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3333332 236778888888888888888888888888775 34 66777777777777888888888888876432
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004813 544 SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSL 623 (729)
Q Consensus 544 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (729)
.-+-.+|--+...|.+.++++.|+-.|++..+-++. +.+....+...+-+.|+.++|+++++++...... |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 122234455667788888888888888888876655 6667777777888888888888888888875433 33344445
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 624 LHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
+..+...+++++|+..++++.+. .+.+...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55666678888888888888886 5666677788888888888888888777777653
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=6.9e-12 Score=128.04 Aligned_cols=287 Identities=8% Similarity=-0.071 Sum_probs=213.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004813 418 CENEEIRKAYELLGRMVVSSVVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 496 (729)
...|+++.|.+.+.+..+.. |+. ..+-....+..+.|+++.|.+++....+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999998887653 443 334444667788899999999999988764333333444457888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH-HHHHHH---HhcCChhHHHHHHHH
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT-KIMLGL---VKLQRAKDLLVVLAQ 572 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~A~~~~~~ 572 (729)
...++.+.+.. +-+..+...+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 456778889999999999999999999999998743 333231 111221 222333334445555
Q ss_pred HHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 573 MLVEGCA---LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRET---MLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 573 ~~~~~~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+.+..+. .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5554221 37888889999999999999999999999985 444432 112222234457889999999998887
Q ss_pred CCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 647 SEVLDS--SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 647 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
.+.|+ ....++++.+.+.|+|++|.+.|+........||...+..+...+.+.|+.+++..+-+
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566 67889999999999999999999954443457999999999999999999998876543
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.4e-11 Score=109.53 Aligned_cols=293 Identities=14% Similarity=0.056 Sum_probs=180.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
.++.++|.++|-+|.+.+. -+..+.-+|.+.|-+.|..+.|+++.+.+.++ ||. |+..-+.+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl------------ 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLAL------------ 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHH------------
Confidence 3456666666666655321 12233344555566666666666666666543 222 121111111
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC-- 442 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 442 (729)
..|..-|...|-++.|+.+|..+.+.+..-......|+..|-+..++++|+++-+++.+.+..+..
T Consensus 111 ------------~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 111 ------------QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred ------------HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 344555666666666666666666554434445566677777777777777777777666544332
Q ss_pred --HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 443 --ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 443 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
..|.-+...+....+.+.|...+....+.+.+ .+..--.+.+.....|++..|.+.++.+.+.+..--..+...|..
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 23455555555667788888888888776544 444445667777888888888888888887654334556777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCC
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE---QNK 597 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~ 597 (729)
+|.+.|+.++....+..+.+.. ++...-..+........-.+.|..++.+-+.. +|+...+..+|+.-.. .|.
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccc
Confidence 8888888888888888887764 44444444444445555567777776666665 6788888888876543 344
Q ss_pred HHHHHHHHHHHHHC
Q 004813 598 LKDCALFFNVMVKA 611 (729)
Q Consensus 598 ~~~A~~~~~~~~~~ 611 (729)
..+-+.++.+|+..
T Consensus 334 ~k~sL~~lr~mvge 347 (389)
T COG2956 334 AKESLDLLRDMVGE 347 (389)
T ss_pred hhhhHHHHHHHHHH
Confidence 55566666666654
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.2e-11 Score=108.01 Aligned_cols=290 Identities=14% Similarity=0.063 Sum_probs=189.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLEL------SFYTCIIPMLCRENKL 288 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 288 (729)
+++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++++.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356677777777777642 113334455667777777777777777777763 332 2344566778888899
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhh
Q 004813 289 EEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDK 368 (729)
Q Consensus 289 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~ 368 (729)
|.|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.+-.+...-. ..-
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---Aqf----------------- 182 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---AQF----------------- 182 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---HHH-----------------
Confidence 999999988887542 23456777888999999999999999888876543332211 111
Q ss_pred cCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 004813 369 CGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAF 448 (729)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 448 (729)
|..|...+....+.+.|..++.+..+.++.++..--.+.+.+...|++++|.+.++...+.++.--+.+...|
T Consensus 183 -------yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 183 -------YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -------HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1445555556667777777777777776666666667777777788888888888887777555555666777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---c
Q 004813 449 VLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV---M 525 (729)
Q Consensus 449 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 525 (729)
..+|.+.|+.++....+..+.+... ....-..+.+.-....-.+.|..++.+-..+ +|+...+..+++.-.. .
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccc
Confidence 7788888888888888877776533 2223333333333444455666555555544 5777777777776543 3
Q ss_pred CCHHHHHHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYS 540 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~ 540 (729)
|...+...+++.|..
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 344555555555543
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=2.5e-08 Score=98.79 Aligned_cols=532 Identities=9% Similarity=0.026 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNSG-GFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLL 209 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 209 (729)
+..|..-+.....+|++..-...|++.... .+.-....|...+...-.. +-++-+.+++++..+. +...-+-.|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 357777888888999999999999988543 3334456688888877777 8889999999999874 333467778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCC--HHhHHHH
Q 004813 210 EVLFETNRIESALDQFRRMHKK------GCCPNSRTFEIVIKGLIANSRV---DDSVSILGEMFDLGIQLE--LSFYTCI 278 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~--~~~~~~l 278 (729)
..+++.+++++|.+.+...... ..+.+...|..+....++.-+. -....+++.+... -+| ...|++|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 8899999999999999887642 1233455666666665554332 2344455555432 233 4578999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH--HcCCCCCHHhHHHHHHHHHcc-
Q 004813 279 IPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMI--VIGLTPTDDVFVDIVRGLCEV- 355 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~~~~~~l~~~~~~~- 355 (729)
.+.|.+.|.+++|..+|++....- -+..-|+.+..+|+.-....-+..+ + +. +.+-.-+.......+..+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHHHHHHHHHHHH
Confidence 999999999999999998877642 3444566666666543222111111 1 11 111111111111111111000
Q ss_pred -CChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC-CCC-----CcccchHHHHHHHhcCCHHHHHH
Q 004813 356 -GKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR-KIA-----DCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 356 -~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
+..--.-.++-...+.++..|.. +.-+..|+..+-...+.+.... ++. ....|..+...|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 00000001111111111111211 1222345566666666665443 221 34467788888888999999999
Q ss_pred HHHHHHHCCCCCC---HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHH
Q 004813 429 LLGRMVVSSVVPD---CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-----------------LDSISYSKLVEGLC 488 (729)
Q Consensus 429 ~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~ 488 (729)
+|++..+...+-- ..+|..-...=.+..+++.|.++++......-. .+...|+.+++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9998876532211 234444444445667788888888776532111 13345666777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhc---CChh
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKL---QRAK 564 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~ 564 (729)
..|-++....+++++....+. ++.+.-.....+-.+.-++++.++|++-...-..|+. ..|+..+.-+.+. ...+
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 788999999999999876542 3333223333445667789999999887776555665 3677766655442 3689
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHH
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCILIQS--MSEQNKLKDCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
.|..+|++.++ |..|...-+-.|+.+ --+.|-...|+.++++.... +.+. ...|+..|.--...=-+..-..++
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 99999999998 565544332222222 23468888899999997653 4443 346777775443333345567788
Q ss_pred HHHHhCCCCCCHHh---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 641 NKLVSDSEVLDSSM---YNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 641 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++.++. -|+... .--....-.+.|..+.|..++.---+
T Consensus 646 ekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 646 EKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 888876 344432 33455666788999999888865544
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.1e-12 Score=126.78 Aligned_cols=281 Identities=15% Similarity=0.101 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHH
Q 004813 288 LEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIG--LTPTDDVFVDIVRGLCEVGKFDESVNFL 365 (729)
Q Consensus 288 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~l 365 (729)
..+|...|..+.++- .-+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----------- 402 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----------- 402 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----------
Confidence 466666666644432 1223444556666777777777777777766532 11134445333332211
Q ss_pred HhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 004813 366 EDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATY 445 (729)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 445 (729)
.-+---+-+.+.+.++..+.+|.++..+|.-+++.+.|++.|++..+.+.. ...+|
T Consensus 403 -----------------------~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYay 458 (638)
T KOG1126|consen 403 -----------------------EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAY 458 (638)
T ss_pred -----------------------hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhh
Confidence 001111222333444446777777777777777888888877777665321 56677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 446 SAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSK---LVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 446 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
+.+.+-+.....+|.|...|+..+.. |+..|++ +...|.+.++++.|+-.|+++.+.+ +.+.+....+...+
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 77777777777788888887776654 4444443 5666777888888888888877754 34556666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCA 602 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 602 (729)
.+.|+.++|+++++++...+ +.|+..--..+..+...+++++|+..++++.+.-+. +...|..+...|.+.|+.+.|+
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHH
Confidence 77788888888888877765 344444444556666777888888888887775222 4556667777788888888888
Q ss_pred HHHHHHHHC
Q 004813 603 LFFNVMVKA 611 (729)
Q Consensus 603 ~~~~~~~~~ 611 (729)
.-|.-+.+.
T Consensus 612 ~~f~~A~~l 620 (638)
T KOG1126|consen 612 LHFSWALDL 620 (638)
T ss_pred HhhHHHhcC
Confidence 777777764
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.2e-10 Score=108.61 Aligned_cols=299 Identities=13% Similarity=0.033 Sum_probs=213.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
.|+|..|.++..+-.+.+-.| ...|..-..+.-+.||.+.+-.++.+..+....++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888876665332 3455556667777888888888888888765567777788888888888999999888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 295 FKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 295 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
.+++.+.+. .+.........+|.+.|++.....++.++.+.|.-.+...-..=-.+
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a----------------------- 231 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA----------------------- 231 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH-----------------------
Confidence 888887764 45667788888999999999999999999988876554432111111
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 454 (729)
|+.+++-....+..+.-...++.....--.++..-..++.-+.+.|+.++|.++..+..+++..|+ . .....+.+
T Consensus 232 -~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~ 306 (400)
T COG3071 232 -WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLR 306 (400)
T ss_pred -HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcC
Confidence 134444333344444444455555443322566677777888888888888888888888766655 2 22334566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 534 (729)
.++...-++..+.-.+.... ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHH
Confidence 77777777777666654333 5578888888888888999999988877775 68888888888888888888888888
Q ss_pred HHHHHHcCCCCC
Q 004813 535 RSLAYSSGTSYT 546 (729)
Q Consensus 535 ~~~~~~~~~~~~ 546 (729)
+++....-.+|+
T Consensus 384 r~e~L~~~~~~~ 395 (400)
T COG3071 384 RREALLLTRQPN 395 (400)
T ss_pred HHHHHHHhcCCC
Confidence 887765443443
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4e-09 Score=109.14 Aligned_cols=531 Identities=12% Similarity=0.078 Sum_probs=298.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC--C-cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGG--F-KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLE 210 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 210 (729)
+..+.+.|.+.|-+..|++.+..+.... + ......-..++.-+.+ -.++.+.++++.|...++..|..+.-.+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~--lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGS--LSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3446677778888888887777663210 0 0000001122333333 568888999999988888878777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-C----------CCCChhhHHHHHHHHHhcCChhHHHHHHHHH------------HHCC
Q 004813 211 VLFETNRIESALDQFRRMHKK-G----------CCPNSRTFEIVIKGLIANSRVDDSVSILGEM------------FDLG 267 (729)
Q Consensus 211 ~~~~~~~~~~A~~~~~~m~~~-~----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~------------~~~~ 267 (729)
-|...=-.+..+++|+..+.- | +.-|+...-..|.+.++.|++.+.+++.++- ++..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 777666667777777776542 2 3456666667889999999999888876642 1211
Q ss_pred ---------------CCCCHHhH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHH
Q 004813 268 ---------------IQLELSFY------TCIIPMLCRENKLEEAIRLFKMMRALDLM-----------PDELTYEELIN 315 (729)
Q Consensus 268 ---------------~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~ 315 (729)
+.+|...| -..|..|...=+....-.+...+.+-++. .....-..|+.
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 11122222 11233333322222221122122111110 01112334566
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhc------------CCCCC---------
Q 004813 316 CLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKC------------GYVTS--------- 374 (729)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~------------~~~~~--------- 374 (729)
-.-+.++..--..+++.....|. .|..+++.+.+.|...++-.+- ++++.. ..++.
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 77788888888888888888886 4788888888888766542221 111100 11111
Q ss_pred --------------CchHHHHHHHhcCChhHHH-----------HHHHHHHhCCCC---CcccchHHHHHHHhcCCHHHH
Q 004813 375 --------------PHNALLECCCNAGKFFLAK-----------CILEKMADRKIA---DCDSWNIPIRWLCENEEIRKA 426 (729)
Q Consensus 375 --------------~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 426 (729)
.+....+.+.+..+.+.-. .+.++....+++ |+...+.-+.++...+-+.+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 0122223333333332222 334444444444 566667778888888888888
Q ss_pred HHHHHHHHHCC--CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----------------------CCCHHHHH
Q 004813 427 YELLGRMVVSS--VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSL-----------------------VLDSISYS 481 (729)
Q Consensus 427 ~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~ 481 (729)
++++++..-.. +.-+...-+.++-...+ -+.....++.+++...+. ..+....+
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 88888875332 11111112222222222 122233333333322110 11222222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.|+. ..+.++.|.++-++. ..+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|
T Consensus 1083 VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcC
Confidence 2222 123444444433332 2355677777777777777777665544 245667777777778888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
.|++-.+++....++.-.|.+.+ .|+-+|++.++..+..+++ .-||......+.+-|...|.++.|.-++.
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 88887777776666655554443 5677777777776655443 34666666677777777777777666554
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhc
Q 004813 642 KLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
+...|.-|...+...|++..|...-.+. .+..||..+.-+|...+...-|+..
T Consensus 1219 ---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiC 1271 (1666)
T KOG0985|consen 1219 ---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQIC 1271 (1666)
T ss_pred ---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhc
Confidence 3344777777888888887776554333 4567888888888888777776655
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=4.2e-10 Score=102.78 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=34.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC-ILIQSMSEQNKLKD 600 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~ 600 (729)
+.-..++++.+..++.+..--...|...+| +..+++..|++.+|+++|-.+....++ |..+|. .|.++|.+.+.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 333344444444444444333223333332 344455555555555555444332222 333332 23344445555554
Q ss_pred HHHHH
Q 004813 601 CALFF 605 (729)
Q Consensus 601 A~~~~ 605 (729)
|.+++
T Consensus 447 AW~~~ 451 (557)
T KOG3785|consen 447 AWDMM 451 (557)
T ss_pred HHHHH
Confidence 44433
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.2e-10 Score=108.77 Aligned_cols=287 Identities=11% Similarity=0.019 Sum_probs=176.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
.|++..|+++..+-.+.+-.| ...|..-..+-.+.|+.+.+-.++.+.-+..-.++....
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~------------------- 156 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE------------------- 156 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH-------------------
Confidence 455555555555544443211 223334444455555555555555555543111222222
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC-- 442 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 442 (729)
-+..+.....|+++.|..-+.++.+.++.++.......++|.+.|++.....++..+.+.|.-.+.
T Consensus 157 ------------ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 157 ------------LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred ------------HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 233334444555555555555555555445555555556666666666666666666555543332
Q ss_pred -----HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 443 -----ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 443 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
.+|..++.-....+..+.-...|+..... .+.++..-.+++.-+.+.|+.++|.++.++..+++..|+. .
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 45666777666666666666777776544 3446667778888888889999999988888887655551 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
..-.+.+-++.+.-++..+...+.. +.++..+.+|...|.+.+.|.+|.+.|+..++. .|+..+|+.+.+++.+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 2223455667666666666655443 344567778888888888888888888877665 6788888888888888888
Q ss_pred HHHHHHHHHHHHHC
Q 004813 598 LKDCALFFNVMVKA 611 (729)
Q Consensus 598 ~~~A~~~~~~~~~~ 611 (729)
..+|.+.+++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888776643
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-09 Score=106.59 Aligned_cols=239 Identities=13% Similarity=0.045 Sum_probs=143.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
-|..+...|+..+-..+=.++.+..|....+|-++.--|.-.|+..+|.+.|.+....+.. =...|..+.+.|.-.|..
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH
Confidence 3445555666555555556666666656667777777776677777777777665443211 123566666666677777
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 459 EDALRVFRQVSAQ--SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 459 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
|+|...+....+. |.. -+..| +.--|.+.+++..|.++|.++.... +-|+.+.+-+.-.....+.+.+|..+|+
T Consensus 363 dQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 7777666655543 111 11122 3334556677777777777776542 3455566666655566667777777776
Q ss_pred HHHHcC------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 537 LAYSSG------TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 537 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..+..- ...-..+++.|..+|.+.+.+++|+..+++.+....+ +..++.++.-.|...|+++.|.+.|.+.+.
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 655210 0112345666667777777777777777777666444 666677777777777777777777776664
Q ss_pred CCCCCCHHHHHHHHH
Q 004813 611 AGLVPDRETMLSLLH 625 (729)
Q Consensus 611 ~~~~p~~~~~~~l~~ 625 (729)
+.|+..+-..++.
T Consensus 518 --l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 518 --LKPDNIFISELLK 530 (611)
T ss_pred --cCCccHHHHHHHH
Confidence 5666555444443
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-10 Score=111.13 Aligned_cols=84 Identities=10% Similarity=0.034 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCccc-HHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLS-VDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN-VDTLNYLLEV 211 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 211 (729)
+-....-|.+.|++++|+++|.+.++. .|+ +..|...-.+|... |+++.+.+.-.+.++. .|+ +..+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~l-gd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESL-GDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHH-hhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 334456677888888888888888774 566 55666666667777 8888888877777764 344 3345555556
Q ss_pred HHhcCCHHHHH
Q 004813 212 LFETNRIESAL 222 (729)
Q Consensus 212 ~~~~~~~~~A~ 222 (729)
+-..|++++|+
T Consensus 193 ~E~lg~~~eal 203 (606)
T KOG0547|consen 193 HEQLGKFDEAL 203 (606)
T ss_pred HHhhccHHHHH
Confidence 66666666654
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.1e-08 Score=93.80 Aligned_cols=278 Identities=12% Similarity=0.069 Sum_probs=160.6
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 70 LDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 70 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
+...+++..|..+++.....+. .....+-..+...+.+.|++++|...|.-+.... .++...+..|.-++.-.|.+.+
T Consensus 32 fls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 4456778888888887654321 1222344556777889999999999999887765 6677788888888888899999
Q ss_pred HHHHHHHHHhCCCcccHHhH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVF-NVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 228 (729)
|..+-.+. |+.... ..++...-+. ++-++-...-+.+.+. ...--+|.......-.+.+|++++.+.
T Consensus 110 A~~~~~ka------~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 110 AKSIAEKA------PKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHhhC------CCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 98887665 333333 3444444555 7666666655555432 222334444444445678999999988
Q ss_pred HhCCCCCChhhHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004813 229 HKKGCCPNSRTFEIVI-KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDE 307 (729)
Q Consensus 229 ~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 307 (729)
... .|+-...|.-+ -+|.+..-++-+.++++-.... ++.++...|..+....|.=.-..|..-..++.+.+- ..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~--~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID--QE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc--cc
Confidence 765 24544555433 3556777788888888777653 323444555544444443222233333344443321 11
Q ss_pred hhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCC
Q 004813 308 LTYEELINCLCEN-----LRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVT 373 (729)
Q Consensus 308 ~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~ 373 (729)
|. .+.-.++. .+-+.|++++--+.+. .|... ..++--|.+.+++++|..+.++..+..+
T Consensus 253 --~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP 316 (557)
T KOG3785|consen 253 --YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTP 316 (557)
T ss_pred --ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCCCCh
Confidence 11 12222222 2346677776665542 23222 2233445666677777666666554444
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=5.8e-08 Score=96.54 Aligned_cols=429 Identities=12% Similarity=0.046 Sum_probs=204.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 260 (729)
+++...+...+.+.+. .+-...+.....-.+...|+.++|.+..+.-....+. +.+.|+.+.-.+....++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHH
Confidence 5566666666666552 2333444444444455567777777776665554322 4556666665566667777777777
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 004813 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIG-LT 339 (729)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~ 339 (729)
......+. .|..++.-+.-.-+..++++..........+... .....|..+..++.-.|+...|..++++..+.. -.
T Consensus 99 ~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77766442 4555666666666667777777776666665431 234456667777777788888888887777654 24
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh
Q 004813 340 PTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419 (729)
Q Consensus 340 p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (729)
|+...+......+- -.....+.|..+.|.+.+......-+.....-..-...+.+
T Consensus 177 ~s~~~~e~se~~Ly-------------------------~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 177 PSKEDYEHSELLLY-------------------------QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred CCHHHHHHHHHHHH-------------------------HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence 55555432211110 01112233334444433333222211112222233444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC-KLCNYEDAL-RVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAV 497 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 497 (729)
.+++++|..++..++.. .||..-|...+..+. +-.+.-++. .+|....+.-....... ..=++......-.+..-
T Consensus 232 l~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHH
Confidence 56666666666666554 444444444333222 222222222 44443333211100000 00011111111222333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcC----------CCCCHHhH--HHHHHHHHhcC
Q 004813 498 EVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY----SSG----------TSYTTSTY--TKIMLGLVKLQ 561 (729)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~~ 561 (729)
.++..+.+.|+++-.....+ .|-.....+-..++.-.+. ..| -+|.+..| -.++..+-+.|
T Consensus 309 kyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 44445555554332222221 1211111110111111110 000 13333333 33445566667
Q ss_pred ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDV-EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
+++.|+.+++..+.. .|+. ..|..-.+.+...|++++|..++++..+... ||...-.--..-..+.++.++|.++.
T Consensus 386 ~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred cHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHH
Confidence 777777776666654 4443 2344445566666777777777766665431 23333223444445666667777666
Q ss_pred HHHHhCC
Q 004813 641 NKLVSDS 647 (729)
Q Consensus 641 ~~~~~~~ 647 (729)
......|
T Consensus 463 skFTr~~ 469 (700)
T KOG1156|consen 463 SKFTREG 469 (700)
T ss_pred HHhhhcc
Confidence 6666553
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=4.2e-08 Score=97.55 Aligned_cols=456 Identities=12% Similarity=0.074 Sum_probs=277.5
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..+++...+++.+.+.+.. +....+.....-.+...|+-++|......-...+ .-+...|..+.-.+....++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 4577888888888887743 4344455545555777899999999888887765 445678888888888888999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
..|..+...+ +.+...+.-+--.-.+. |+++.......++.+.. +.....|..+.-++.-.|+...|..++++..+.
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998764 45556666555455555 78888888887777753 335667888888888889999999999998775
Q ss_pred C-CCCChhhHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004813 232 G-CCPNSRTFEIVI------KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLM 304 (729)
Q Consensus 232 ~-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 304 (729)
. -.|+...|.... ......|..+.|.+.+..-... +......-..-...+.+.+++++|..+|..+...+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 3 245665554433 2345667777777777655432 21222223344566788899999999999998875
Q ss_pred CCHhhHHHHHHHHH-hcCChhHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHH
Q 004813 305 PDELTYEELINCLC-ENLRLDDAN-DILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLEC 382 (729)
Q Consensus 305 p~~~~~~~li~~~~-~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~ 382 (729)
||...|...+..+. +-.+.-++. .+|....+. .|.......+--......++
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel------------------------ 303 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL------------------------ 303 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh------------------------
Confidence 77777776655444 233333333 555555432 12111110000000000111
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHhH--H
Q 004813 383 CCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV----SS----------VVPDCATY--S 446 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~~~--~ 446 (729)
.+....++..+.++|++ ..+..+...|-.....+-..++...+.. .| -+|....| .
T Consensus 304 ------~~~vdkyL~~~l~Kg~p--~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 304 ------KEIVDKYLRPLLSKGVP--SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred ------HHHHHHHHHHHhhcCCC--chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 11222333344444432 2222232222221111111111111110 00 13444333 3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004813 447 AFVLGKCKLCNYEDALRVFRQVSAQSLVLD-SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM 525 (729)
Q Consensus 447 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (729)
.+...+-+.|+++.|..+++..+++ .|+ +..|..-.+.+...|++++|..++++..+.. .+|..+-..-..-..+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 4566777888999999999888876 333 3345555677888899999999999888764 45555544555666678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHh--------HHH--HHHHHHhcCChhHHHHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTST--------YTK--IMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~--------~~~--l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
++.++|.++.....+.|. +... |-. =..+|.+.|++..|++-|..+.+
T Consensus 453 n~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 888889888888877664 2222 211 12457777777777776665543
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.38 E-value=9.5e-08 Score=97.07 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGL 627 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 627 (729)
.|......+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... +.|+ .....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 44556667788888999988888877653 22566677777788889999999999999887 4565 55778889999
Q ss_pred hccCChHHHHH--HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 628 ADGSQLHLVSS--GINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 628 ~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+.|+-..|.. ++..+.+. .+.+...|..++..+.+.|+.++|.+.|+...+
T Consensus 729 le~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99998777777 99999988 477889999999999999999999999998776
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=8.2e-09 Score=101.26 Aligned_cols=146 Identities=14% Similarity=0.012 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLA--------QMLVEGCALDVEAYCILIQSMSEQNKL 598 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~ 598 (729)
....+.+++....+........+...++......|+++.|++++. .+.+.+..|-.+ ..+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 356666666666554333334455555666677788888887777 444444444433 3455556666666
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 599 KDCALFFNVMVKA--GLVPDRETMLSL----LHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 599 ~~A~~~~~~~~~~--~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
+.|..++.+.+.- .-.+......++ ...-.+.|+-++|..+++++.+. .++|..+...++.+|++. |.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 6666666655532 111222222222 23334567777777777777776 366777777777777664 445555
Q ss_pred HHHH
Q 004813 673 YLLD 676 (729)
Q Consensus 673 ~~~~ 676 (729)
.+-.
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5443
No 66
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.9e-07 Score=95.06 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=79.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhc
Q 004813 73 TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKER--------YPNVREALISLVFSFVNH 144 (729)
Q Consensus 73 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 144 (729)
-|+.+.|.+-.+.++ +...|..|.+.|.+.++.+-|.-.+-.|.... ...+...=....-.-...
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 477777766666553 34578888888888887777766555553220 011111112222233467
Q ss_pred CChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 145 YRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQ 224 (729)
Q Consensus 145 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 224 (729)
|.+++|..+|.+-.+. ..+=..|... |.+++|.++-+.--.. . =..||......+-..++.+.|++.
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~-g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQ-GMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhc-ccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHH
Confidence 7888888888777553 2333344444 8888888776543221 1 234565666666667778888777
Q ss_pred HHHH
Q 004813 225 FRRM 228 (729)
Q Consensus 225 ~~~m 228 (729)
|++.
T Consensus 881 yEK~ 884 (1416)
T KOG3617|consen 881 YEKA 884 (1416)
T ss_pred HHhc
Confidence 7653
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.5e-10 Score=104.44 Aligned_cols=238 Identities=13% Similarity=0.033 Sum_probs=199.6
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS-FNILI 519 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 519 (729)
|..--+.+..+|.+.|-+.+|...++...+. .|-+.||..|-++|.+..+...|+.++.+-.+. .|..+| ..-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 4444467788999999999999999988876 456778888999999999999999999998875 354444 45567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 599 (729)
..+-..++.++|.++|++..+.. +.++.....+...|.-.++++-|+.+|+++++.|+. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77888899999999999998875 566777777777888889999999999999999987 8899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
-++.-|++....--.|+ ..+|..+.......||+..|.+.|+-.... -+.+...++.|.-.-.+.|+.++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999887644454 467888888888999999999999988876 356778999999999999999999999998
Q ss_pred HHhCCCCCCH
Q 004813 678 MLGKGWVPDA 687 (729)
Q Consensus 678 ~~~~g~~p~~ 687 (729)
... +.|+.
T Consensus 455 A~s--~~P~m 462 (478)
T KOG1129|consen 455 AKS--VMPDM 462 (478)
T ss_pred hhh--hCccc
Confidence 876 45664
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=5.6e-10 Score=118.61 Aligned_cols=250 Identities=10% Similarity=-0.028 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKC---------KLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI 493 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 493 (729)
.++|...|++..+..+. +...|..+..++. ..+++++|...+++..+.++. +...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 45666666666654322 2333333333222 224467777778777776544 666677777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 494 TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 494 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 573 (729)
++|...|+++.+.+ +.+...+..+..++...|++++|...++++.+.... +...+..++..+...|++++|...+++.
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888888877753 334556777777777888888888888887776422 2222333444455677778888887777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 004813 574 LVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR-ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS 652 (729)
Q Consensus 574 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 652 (729)
.+....-+...+..+..++...|++++|.+.+.++... .|+. ...+.+...|...| +.|...++.+.+. .....
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~-~~~~~ 507 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES-EQRID 507 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH-hhHhh
Confidence 65532223445666677777788888888887776553 3333 23344444555555 4666666666554 11111
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
.....+...|.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1122245555666777666655 6666543
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=8.6e-10 Score=104.58 Aligned_cols=201 Identities=8% Similarity=-0.050 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556667777777888888888888777653 3346667777777888888888888888877664 344556677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCA-LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLH 634 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (729)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 788888888888888888764222 234456667778888889999999888888752 224567777888888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 635 LVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|...+++..+. .+.+...+..++..+...|+.++|.++.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888876 455667777888888888999999888887764
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=6e-10 Score=118.39 Aligned_cols=244 Identities=11% Similarity=-0.009 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 456 CNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC---------QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR 526 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (729)
++.++|...|++..+..+. +...|..+..++. ..+++++|...++++.+.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3468899999999987543 4555666655443 2345899999999999864 446778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999876 445677888899999999999999999999988554 23333344555667899999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC
Q 004813 607 VMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK-GWV 684 (729)
Q Consensus 607 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~ 684 (729)
++.+.. .| +...+..+..++...|+.++|...++++... .+.+...++.+...|...|+ +|...++.+.+. .-.
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 988753 34 3455677888899999999999999998765 34455566777778888884 888888887753 234
Q ss_pred CCHHHHHHHHhhhhhcchhhhhhhc
Q 004813 685 PDATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 685 p~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
|....+..++.++ .|+.+.+..+
T Consensus 507 ~~~~~~~~~~~~~--~g~~~~~~~~ 529 (553)
T PRK12370 507 DNNPGLLPLVLVA--HGEAIAEKMW 529 (553)
T ss_pred hcCchHHHHHHHH--HhhhHHHHHH
Confidence 5545555555544 4555555555
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5e-08 Score=95.91 Aligned_cols=450 Identities=14% Similarity=0.072 Sum_probs=245.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH--Hh
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML--CR 284 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~ 284 (729)
+=++.+...|++++|.+...++...+ +.+...+..-+-++.+.+.+++|+.+.+.-.. ...+...+ +=.+| .+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yr 91 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYR 91 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHH
Confidence 34566778899999999999998865 44566677777788889999999855543221 01111111 23444 47
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHccCChHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDV-FVDIVRGLCEVGKFDESVN 363 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~ 363 (729)
.++.|+|+..++.... -+..+...-...+.+.|++++|.++|+.+.+++..--..- -..++.+-. .-.+-
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-
Confidence 8999999999883332 2334566666778899999999999999988764321111 111111100 00000
Q ss_pred HHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC------
Q 004813 364 FLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS------ 437 (729)
Q Consensus 364 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 437 (729)
+++........+|..+ ......+...|++.+|+++++.....+
T Consensus 163 ~~q~v~~v~e~syel~-------------------------------yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELL-------------------------------YNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred HHHhccCCCcchHHHH-------------------------------HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 1111111111122111 111223334455555555555441110
Q ss_pred -------CCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHccCCHH--HHHHHHHHHH
Q 004813 438 -------VVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE---GLCQVEKIT--EAVEVFCCMS 504 (729)
Q Consensus 438 -------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~--~A~~~~~~~~ 504 (729)
+.-+. ..-..+...+...|+.++|..++..+++.... |........+ ++....++- .++..++...
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 00000 11123334555677888888888777776543 4322222221 111111111 1122222111
Q ss_pred HCCC----------CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cCChhHHHHHHH
Q 004813 505 KNGC----------SLSSSSF-NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK--LQRAKDLLVVLA 571 (729)
Q Consensus 505 ~~~~----------~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~ 571 (729)
.... .-..... +.++..|. +..+.+.++-..... ..|. ..+..++..+.+ ...+..+.+++.
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1000 0011111 22333332 333444433222211 1222 344455544432 235777888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004813 572 QMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN--------VMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKL 643 (729)
Q Consensus 572 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (729)
...+..+.-...+.-.++......|+++.|++++. .+.+.+..|.. ...+...+.+.++.+.|..++...
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHH
Confidence 77766433334556667777889999999999999 66665555654 445666677777777777777766
Q ss_pred HhC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 644 VSD------SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 644 ~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
+.. +..--..++..++..-.+.|+-++|..+++++.+.+ .+|..+...++.++++-+. +.+..++.
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~-eka~~l~k 515 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP-EKAESLSK 515 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH-HHHHHHhh
Confidence 543 111223355556666678899999999999999853 6888889999999887654 44444444
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=2.7e-09 Score=101.11 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=128.8
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344555566666667777777777666654322 45556666666777777777777777766643 3345566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTS-YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 600 (729)
+...|++++|.+.++++.+.... .....+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777776653211 22345555666777777777777777777765332 45566677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 601 CALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777765 233455555666667777777777777766654
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=1e-06 Score=92.04 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 004813 75 DLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVL 154 (729)
Q Consensus 75 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 154 (729)
+...|+..|-++.+.+ +.-...|..|...|....+...|...|+...+.+ +.+......+...|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4566666666665543 2224578888888888888888999999888876 667788888999999999999999884
Q ss_pred HHHHhCCCcccHHhHH--HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004813 155 VNMNSGGFKLSVDVFN--VVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKG 232 (729)
Q Consensus 155 ~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 232 (729)
-..-+.. +.....++ .+--.+.+. ++...+..-|+...... +.|...|..++.+|.++|++..|+++|.+...-
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 4432221 11122222 222334455 88888888898888764 347889999999999999999999999887764
Q ss_pred CCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHH
Q 004813 233 CCPNSRTFEIVIK--GLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 233 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~ 265 (729)
.|+ .+|...-. ..+..|.+.++...+..+..
T Consensus 626 -rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 343 33333322 33557888888888777653
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.9e-06 Score=87.88 Aligned_cols=128 Identities=17% Similarity=0.081 Sum_probs=75.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
|......+.+.++.++|...+.+..+.. +.....|......+...|..++|.+.|......+ +-++.+..++...+..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3444555556666666666666665532 3344455555555566666666666666665543 2334455666666666
Q ss_pred cCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 560 LQRAKDLLV--VLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 560 ~~~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|+..-|.. ++.++.+.++. +...|-.+...+.+.|+.++|.+.|+...+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 666555555 66666665544 566666666666666666666666666554
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.1e-08 Score=104.73 Aligned_cols=291 Identities=14% Similarity=0.047 Sum_probs=177.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh------h
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC------K 454 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~------~ 454 (729)
..+...|++++|++.++.-...-+............+.+.|+.++|..+|..++.. .|+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 34456677777777776644443334455566677777778888888888877776 345555544444333 1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI-TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
..+.+....+++++...-+. ......+.-.+.....+ ..+..++..+..+|++ .+|+.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 22456667777777655322 22222221112221222 2345566666666643 344445445554444444455
Q ss_pred HHHHHHHc----C----------CCCCHHhH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 534 LRSLAYSS----G----------TSYTTSTY--TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 534 ~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
++...... + -.|....| .-+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55444322 1 12333333 44566677888899999998888887433 36677778888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH------hH--HHHHHHHHhcCChh
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSS------MY--NILINGLWKEGLTS 669 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~ 669 (729)
+.+|.+.++........ |...-+..+..+.++|++++|.+++......+..|-.. +| ...+.+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999888888876443 55565666777788899999988888887765322221 33 34677888888888
Q ss_pred HHHHHHHHHHh
Q 004813 670 QASYLLDLMLG 680 (729)
Q Consensus 670 ~A~~~~~~~~~ 680 (729)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.7e-11 Score=82.14 Aligned_cols=50 Identities=38% Similarity=0.631 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004813 200 PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 200 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 249 (729)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777653
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.6e-09 Score=98.01 Aligned_cols=231 Identities=10% Similarity=-0.053 Sum_probs=147.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
--+.+.++|.+.|.+.+|.+.|+.-.+.. |-..||..|-++|.+..+++.|+.++.+-++. .|-.+|+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l------- 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL------- 293 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-------
Confidence 34667778888888888888887766653 55557777778888888888888888777663 46666651
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
.-..+.+...++.++|.++++...+....++.+...+...|.-.++++-|+..|+++
T Consensus 294 -----------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -----------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 344455566667777777777776666556666666666666666777777777777
Q ss_pred HHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004813 434 VVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLD--SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS 511 (729)
Q Consensus 434 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 511 (729)
+..|+. +...|+.+.-+|.-.+++|-++.-|......--.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cch
Confidence 666654 556666666666666666666666666554322222 2234445555555666666666666665543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
...++.|.-.-.+.|++++|..+++....
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 45556655555666666666666665554
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=4e-09 Score=91.14 Aligned_cols=189 Identities=11% Similarity=-0.054 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN 596 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 596 (729)
.|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 34445566666666666666666554 333445555556666666666666666666655433 4455555555666666
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLV-PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
++++|...|++....-.- --..+|..+..+..+.|+.+.|.+.|++..+. .+-.+...-.+.+...+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 666666666666654111 12345555555556666666666666666665 2333445555666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhc
Q 004813 676 DLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 676 ~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
+.....+. ++.......|+.-.+.|+...+..|
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 66655543 5666666666666666666555554
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.4e-11 Score=80.69 Aligned_cols=49 Identities=41% Similarity=0.747 Sum_probs=29.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLC 318 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 318 (729)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666666666666666666665554
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=1.7e-06 Score=87.18 Aligned_cols=515 Identities=16% Similarity=0.088 Sum_probs=240.6
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 70 LDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 70 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
|...|+++.|...|-.+. ..-..+.+...++.|..|..+++.+.++.. ...-|..+...|+..|+++.
T Consensus 716 l~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 556677777777765541 223345556667777777777777766542 23345666677777777777
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMH 229 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 229 (729)
|.++|-+. ..++-.|..|.+. |+++.|.++-++.. |...+...|-+-..-+-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~-~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKA-GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhcc-ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 77777554 2244456667777 77777766655443 233344444444444444555554444432211
Q ss_pred h----------CC-----------CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 004813 230 K----------KG-----------CCPN--SRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286 (729)
Q Consensus 230 ~----------~~-----------~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (729)
. .| ..|+ ..|...+..-+...|++..|+..|-+..+ |.+-+.+|-..+
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASE 922 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhh
Confidence 0 00 0111 23444455555566666666665544433 444455555555
Q ss_pred CHHHHHHHHHHHHhCC------------CCCCHh--------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH
Q 004813 287 KLEEAIRLFKMMRALD------------LMPDEL--------TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFV 346 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~------------~~p~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (729)
-+++|.++-+.--..+ +--+.. ....-+...+.++.++-|.++-+-..+.. .|. ...
T Consensus 923 lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhl 999 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHL 999 (1636)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chh
Confidence 5555554432110000 000000 00111122233344444444433332221 111 122
Q ss_pred HHHHHHHccCChHHHHHHHHhhcCCCCCC--c-------------------hHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 347 DIVRGLCEVGKFDESVNFLEDKCGYVTSP--H-------------------NALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 347 ~l~~~~~~~~~~~~a~~~l~~~~~~~~~~--~-------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
.+..-+...|++++|.+.+-+....+..- | ...+.++....++..|.++-+.-...-
T Consensus 1000 k~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~-- 1077 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDL-- 1077 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhh--
Confidence 33344556677777766554433322210 1 222344455555555555443321111
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHH----------------HH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQ----------------VS 469 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----------------~~ 469 (729)
-...+..-..+-...|++.+|..++-+. -+|+.. ++.|...+-+..|+++-+. ..
T Consensus 1078 l~dv~tgqar~aiee~d~~kae~fllra----nkp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~ 1148 (1636)
T KOG3616|consen 1078 LADVLTGQARGAIEEGDFLKAEGFLLRA----NKPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEAL 1148 (1636)
T ss_pred hHHHHhhhhhccccccchhhhhhheeec----CCCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHH
Confidence 1122233333334455555555544332 244432 3333344444444443322 12
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------------------CCCCH--HHHHHHHHHHHhcC
Q 004813 470 AQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG---------------------CSLSS--SSFNILIYGLCVMR 526 (729)
Q Consensus 470 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------~~~~~--~~~~~l~~~~~~~~ 526 (729)
+.|-+ .+..|..-..-+-+.|++.+|...+-++-+.. +.++. ....+...++-..|
T Consensus 1149 k~gar-gvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~ 1227 (1636)
T KOG3616|consen 1149 KKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAG 1227 (1636)
T ss_pred hcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhccc
Confidence 22322 33445555555566677766666555542211 11111 22222222333333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH---------------HHHHcCCCCCH---HHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLA---------------QMLVEGCALDV---EAYCIL 588 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------~~~~~~~~p~~---~~~~~l 588 (729)
..+.|-+++-.+-. -..-|++++....|.+|.++-+ +.++..-+.+. +-....
T Consensus 1228 ~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaa 1298 (1636)
T KOG3616|consen 1228 CHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAA 1298 (1636)
T ss_pred ccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHH
Confidence 33444333222110 1123455555555555554433 33332111111 112234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCChHHHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH-GLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 644 (729)
++.+...++|++|++ ...+.+++|-..-|..+-. .+.+.|+...|+.++.+--
T Consensus 1299 idl~ien~qwdk~id---tak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~g 1352 (1636)
T KOG3616|consen 1299 IDLMIENDQWDKAID---TAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHG 1352 (1636)
T ss_pred HHHHHhcccHHHHHH---HHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC
Confidence 677788888888764 4555677777666665543 3567888888888776543
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=6.1e-08 Score=99.26 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..+.+.|-..|++++|++.+++.+++. +..+..|..-.+.+-+.|++.+|.+.++.....+.. |...-+-.+..+.++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 334455556666666666666666553 222445555556666666666666666666655443 555555555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHhccCChHHHHHHHHHHH
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRE------TM--LSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
|+.++|.+++....+.+..|-.. .| .-...+|.+.|++..|++-|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666655544322211 11 223445666666666665554443
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=7.3e-07 Score=89.82 Aligned_cols=386 Identities=11% Similarity=0.045 Sum_probs=175.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 260 (729)
.++.+|+.+|-+-- .-...|..|....+|++|+.+-+.. |.+.-...-.+.++++...|+-++|-++-
T Consensus 545 kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 34666666663211 1123456666667777777654321 22211222334455555566665554321
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004813 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP 340 (729)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 340 (729)
.+ +-. -.+.|..|.+.|.+..|.+.-..=.. +..|......+..++.+..-+++|-++|+++.. |
T Consensus 613 ----~s----dgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~ 677 (1636)
T KOG3616|consen 613 ----ES----DGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F 677 (1636)
T ss_pred ----cc----cCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H
Confidence 11 111 12356777777777776654311111 124555666666666666667777777766642 1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC-CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh
Q 004813 341 TDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS-PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419 (729)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (729)
...+..|.+-.-+.+|+++-.-..+..+. .-......+...|+++.|...|-+... .-.-+.+-..
T Consensus 678 -----dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~ 744 (1636)
T KOG3616|consen 678 -----DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIG 744 (1636)
T ss_pred -----HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhh
Confidence 12223333333344444443221111111 012222333444555555544433211 1122333344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
..++.+|+.+++.++.... ...-|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|++..|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 4555555555555554421 22334444555555566666555554321 223345555566666665555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA 579 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 579 (729)
-++.... ......|-.-..-+-.+|++.+|.++|-.+. .|+. -|..|-+.|..++.+++.++---.
T Consensus 814 a~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d--- 879 (1636)
T KOG3616|consen 814 AEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--- 879 (1636)
T ss_pred HHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---
Confidence 5444321 2233334444444445555555555543322 2332 234455555555555544432110
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004813 580 LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 580 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
.-..|-..+..-|...|++..|.+-|-+.- -|.+-+..|...+-|++|.++.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 011233334444555555555555443322 2333444455555555554444
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.2e-05 Score=84.25 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 547 TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
+..|..+..+-.+.|...+|++-|-+. -|...|.-.++...+.|.|++-.+++....+..-.|...+ .|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence 345666667766777777776655432 2566777788888888888888888777777666666554 67777
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
|++.+++.+..+.+ .-|+......+++-|...|.++.|.-+|...
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 88888777665554 3467777778888888888888877666544
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.4e-08 Score=102.39 Aligned_cols=237 Identities=15% Similarity=0.058 Sum_probs=166.0
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHC-----C--C
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQ-----SL-VLDSIS-YSKLVEGLCQVEKITEAVEVFCCMSKN-----G--C 508 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~ 508 (729)
.+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666777777777777777666543 21 122222 234666788888888888888888652 2 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHc---CC
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS-----GTS-YTT-STYTKIMLGLVKLQRAKDLLVVLAQMLVE---GC 578 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 578 (729)
+.-..+++.|..+|.+.|++++|...++.+.+. +.. |.+ ..++.+...|...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112346777778888999988888877776532 111 222 24566777888899999999998876653 12
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC-
Q 004813 579 ALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKA-----G-LVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD- 646 (729)
Q Consensus 579 ~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 646 (729)
.++ ..+++.|...|...|++++|.+++++++.. | ..+. ...++.+...|.+.++.++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999988753 1 1222 456778888999999999888888776543
Q ss_pred -----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 647 -----SEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 647 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+.+....+|..|+..|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 333344588899999999999999999988766
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.9e-06 Score=78.50 Aligned_cols=398 Identities=11% Similarity=0.016 Sum_probs=198.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHH
Q 004813 130 VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF-ADFVFVYKEMVKAGIVPNVDTLNYL 208 (729)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l 208 (729)
+...-...+.+|-..++-+.|...+....... ....-+.++..+...+++- +++...-+-+.+. + .... .
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p---~aL~-~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--P---MALQ-V 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--c---hHHH-H
Confidence 45566667777777888888887776553221 1222333444444331222 2222221112221 0 0111 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhc
Q 004813 209 LEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA--NSRVDDSVSILGEMFDL-GIQLELSFYTCIIPMLCRE 285 (729)
Q Consensus 209 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 285 (729)
|.+..+.+ +..+..-=..|-...+.|+..+...-+.+++. .++...+...+-.+... -++-|+.....+.+.+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111110 01111111223333344555555555655544 45555555555444432 3556677888888888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 286 NKLEEAIRLFKMMRALDLMPDELT-YEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 286 g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
|+.++|+..|+.....+ |+..+ ...-...+.+.|+.+....+...+.... .-+...+
T Consensus 246 Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w------------------- 303 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW------------------- 303 (564)
T ss_pred cCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh-------------------
Confidence 99999999998877643 33222 1222223456777777777777665421 0111112
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCAT 444 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 444 (729)
-.-........++..|..+-++..+.+..+...+-.-...+.+.|++++|.-.|+..+... +-+...
T Consensus 304 ------------fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~ 370 (564)
T KOG1174|consen 304 ------------FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEI 370 (564)
T ss_pred ------------hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHH
Confidence 1112222334455555555555555444444444444445555566666666665554432 124455
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004813 445 YSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV-EGLC-QVEKITEAVEVFCCMSKNGCSLS-SSSFNILIYG 521 (729)
Q Consensus 445 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 521 (729)
|..++.+|...|.+.+|.-.-+...+. +..+..+...+. ..+. ...--++|..++++..+. .|+ ....+.+...
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHH
Confidence 666666666666666555554444332 112333333331 2221 122335566666665553 333 3344555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG 577 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 577 (729)
+...|..++++.+++..... .||....+.|.+.+...+.+.+|.+.|...+..+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 66666666666666665553 4666666666666666666666666666666553
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=7.6e-08 Score=86.22 Aligned_cols=193 Identities=9% Similarity=0.096 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH-HHHHHh
Q 004813 100 CKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV-LGAIVE 178 (729)
Q Consensus 100 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~ 178 (729)
...+..+.+..++.+|.+++....+.. +.+...++.|..+|....++..|.+.++++-.. .|...-|... ...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 444555666777777777777666654 446667777777777777777777777777543 3444444322 234445
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 004813 179 EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEV--LFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256 (729)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 256 (729)
. +.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 91 A-~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 91 A-CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred h-cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 5 6777777777666542 222221112222 224566677777776665432 333333333334567777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 257 VSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDL 303 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 303 (729)
.+-|+...+-+--.....||..+. ..+.|+++.|++...++.++|+
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 777777765433233445654443 3356677777777777776654
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=4.7e-08 Score=94.92 Aligned_cols=230 Identities=13% Similarity=-0.033 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 457 NYEDALRVFRQVSAQS-LVL--DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555321 111 12345555666666677777777777766643 3345666667777777777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004813 534 LRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGL 613 (729)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 613 (729)
.|+...+.. +.+..+|..+..++...|++++|.+.|++..+..+. +. ........+...+++++|.+.+.+.... .
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 777776653 223455666666666777777777777777665332 21 1111122233456677777777654432 2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC---C---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 614 VPDRETMLSLLHGLADGSQLHLVSSGINKLVSD---S---EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
.|+...+ .+. ....|+...+ +.++.+.+. . .+.....|..++..+.+.|++++|...|++..+.+ .||.
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2222111 122 2223444333 233333321 0 01123467778888888888888888888887643 4466
Q ss_pred HHHHHHHhh
Q 004813 688 TTHGLLVGS 696 (729)
Q Consensus 688 ~~~~~ll~~ 696 (729)
+-+...+--
T Consensus 271 ~e~~~~~~e 279 (296)
T PRK11189 271 VEHRYALLE 279 (296)
T ss_pred HHHHHHHHH
Confidence 666554433
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.6e-07 Score=90.24 Aligned_cols=238 Identities=11% Similarity=-0.027 Sum_probs=166.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------
Q 004813 445 YSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI------- 517 (729)
Q Consensus 445 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------- 517 (729)
...+.++..+..+++.+.+-+....+.. -+..-++....+|...|.+..+...-....+.|- -...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4566777778888999999998888765 3666677788888888888888887777766652 12222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+..+|.+.++++.++..|.+.......|+.. .+....++++...+...-.++.- ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3346666788889999988876554343332 23334455555555443332221 1112223567788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
+..|...|.+++... +-|...|....-+|.+.|.+..|++-.+..++. -++....|.-=+-++....+|++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999864 336778889999999999999999999988887 344455666566677777889999999999
Q ss_pred HHhCCCCCCHHHHHHHHhhhhh
Q 004813 678 MLGKGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 678 ~~~~g~~p~~~~~~~ll~~~~~ 699 (729)
.++. .|+..-+.--+.-|..
T Consensus 452 ale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhc--CchhHHHHHHHHHHHH
Confidence 9874 5877776666666665
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=7.4e-06 Score=85.94 Aligned_cols=455 Identities=11% Similarity=-0.021 Sum_probs=252.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHH
Q 004813 111 NVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVY 190 (729)
Q Consensus 111 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 190 (729)
+...+...|-+..+.+ +.-...|..|...|+...+...|.+.|++..+.+ ..+..........+++. .+++.|..+.
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~-~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE-STWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc-ccHHHHHHHH
Confidence 3555666665555554 3446789999999998889999999999997754 55677788889999999 9999999884
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004813 191 KEMVKAGIV-PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ 269 (729)
Q Consensus 191 ~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 269 (729)
-...+.... .-...|..+.-.|.+.++...|+.-|+...+... -|...|..+..+|...|.+..|.++|.+.....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 433332110 0112233345557788999999999998887532 367889999999999999999999999887643
Q ss_pred CCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-------H
Q 004813 270 LEL-SFYTCIIPMLCRENKLEEAIRLFKMMRALD------LMPDELTYEELINCLCENLRLDDANDILEDMI-------V 335 (729)
Q Consensus 270 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~ 335 (729)
|+. ..---....-+..|++.+|...+....... -.--..++-.+...+.-.|-..++.+++++-+ .
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 322 222223344567899999999888776421 00112233333333333343333333333322 1
Q ss_pred cCCCCCHHhHHH-------------------HHHHH----HccCCh---H---HHHHHHHh--hcCCCCCCchHHHHHHH
Q 004813 336 IGLTPTDDVFVD-------------------IVRGL----CEVGKF---D---ESVNFLED--KCGYVTSPHNALLECCC 384 (729)
Q Consensus 336 ~~~~p~~~~~~~-------------------l~~~~----~~~~~~---~---~a~~~l~~--~~~~~~~~~~~l~~~~~ 384 (729)
.....+...+.. ++.++ .+.+.. | -+.+.+-. .....+.+|..|+..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 111111111111 11111 111111 1 01111100 11122444444444333
Q ss_pred h----c----CChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 385 N----A----GKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 385 ~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
+ . .+...|...+.+..+..-.+...||.|.-. ...|++.-+..-|-+-.... +....+|..+.-.+.+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 3 1 123356666666655544456666666554 45566666666555544432 224556666666667777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH--HH--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCM--SK--NGCSLSSSSFNILIYGLCVMRKVDKAI 532 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (729)
+++.|...|.......+. +...|-.........|+.-++..+|..- .. .|--++..-|-.-.......|+.++-+
T Consensus 865 d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 888888888777665332 4444444433444566666777666652 11 122333333333333334455544433
Q ss_pred HHHHHHHH---------cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 533 RLRSLAYS---------SGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQML 574 (729)
Q Consensus 533 ~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 574 (729)
...+.+.. .+.+.+...|........+.+.++.|.+...+.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 32222211 1234455666666666666666666666655543
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=8.9e-08 Score=96.78 Aligned_cols=246 Identities=18% Similarity=0.119 Sum_probs=128.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH
Q 004813 273 SFYTCIIPMLCRENKLEEAIRLFKMMRAL-----DL-MPDELT-YEELINCLCENLRLDDANDILEDMIVI---GLTPTD 342 (729)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~ 342 (729)
.+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455777788888888888887665542 11 133222 233556777888888888888887642 111221
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 004813 343 DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEE 422 (729)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (729)
...... ++.|...|.+.|++++|...+++
T Consensus 280 ~~va~~---------------------------l~nLa~ly~~~GKf~EA~~~~e~------------------------ 308 (508)
T KOG1840|consen 280 PAVAAT---------------------------LNNLAVLYYKQGKFAEAEEYCER------------------------ 308 (508)
T ss_pred HHHHHH---------------------------HHHHHHHHhccCChHHHHHHHHH------------------------
Confidence 111111 15555667777777777666544
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHhhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCCHH
Q 004813 423 IRKAYELLGRMVVSSVVPDCA-TYSAFVLGKCKLCNYEDALRVFRQVSAQ---SLVL----DSISYSKLVEGLCQVEKIT 494 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~ 494 (729)
|++++++.... ..|... .++.+...|+..+.+++|..++....+. -+.+ -..+++.|...|...|+++
T Consensus 309 ---Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 309 ---ALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred ---HHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 33344431111 112222 2444555666777777777777654432 0111 2345666777777777777
Q ss_pred HHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CCCHHhHHHHHHHHHhcC
Q 004813 495 EAVEVFCCMSKNG-------CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS----GT--SYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 495 ~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~ 561 (729)
+|.+++++++... ..-....++.|...|.+.+++.+|.++|.+.... |. +-...+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 7777777665421 0111233455555555555555555555443321 10 111233444444444444
Q ss_pred ChhHHHHHHHHH
Q 004813 562 RAKDLLVVLAQM 573 (729)
Q Consensus 562 ~~~~A~~~~~~~ 573 (729)
++++|.++.+..
T Consensus 465 ~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 465 NYEAAEELEEKV 476 (508)
T ss_pred cHHHHHHHHHHH
Confidence 444444444443
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=7e-06 Score=84.14 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=94.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF 183 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (729)
......|..++|+.+|.+-.+.+ .|=..|-..|.+++|.++-+.-.+. .. ..+|.....-+-.. ++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi--HL-r~Tyy~yA~~Lear-~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI--HL-RNTYYNYAKYLEAR-RDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce--eh-hhhHHHHHHHHHhh-ccH
Confidence 33456789999999999876543 3345566788999998887654332 22 23344344444444 888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 184 ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEM 263 (729)
Q Consensus 184 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 263 (729)
+.|++.|++... |--..+. ++. .++.....+.+.+. |...|.-....+-..|+.+.|+.+|...
T Consensus 875 ~~AleyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 875 EAALEYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 888888876431 1111111 111 11122222222222 2233333333344455555555555555
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 264 FDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 264 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
.+ |-++++..|-.|+.++|-++-++- -|..+...|.+.|-..|++.+|..+|.+.
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44 444455555555555555544332 13333444455555555555555555444
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.2e-06 Score=78.33 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+...+...|+.++|...|++....++.+..........+.+.|+++....+...+.... +-....|-.-+......+
T Consensus 236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 236 MALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEK 314 (564)
T ss_pred HHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhh
Confidence 4444444445555555555554444433322222223333444555555555555544321 111222222223334445
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
+++.|..+-+..++.... +...|-.-...+...|+.++|.-.|+...... +-+...|.-|+++|...|++.+|..+-+
T Consensus 315 ~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 566666666655554333 34444444455555666666666666665431 2355566666666666666666655444
Q ss_pred H
Q 004813 537 L 537 (729)
Q Consensus 537 ~ 537 (729)
.
T Consensus 393 ~ 393 (564)
T KOG1174|consen 393 W 393 (564)
T ss_pred H
Confidence 3
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.8e-07 Score=81.16 Aligned_cols=208 Identities=9% Similarity=-0.049 Sum_probs=152.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
...|.-.|...|+...|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++..+.. +.+-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456667788888888888888888763 3355677788888888888888888888888765 3455666777777788
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGC-ALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
.|++++|...|++....-. .--..+|..+.-+..+.|+.+.|.+.|++.++.... .......+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888877521 113457777777777888888888888888875211 24456677777888888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 639 GINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
.+++....+ .++..+....|+.-.+.||.+.|-++=..+.+. -|...-+..+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 888888774 377888888888888888888887776666653 4665555443
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=1.8e-07 Score=90.88 Aligned_cols=228 Identities=12% Similarity=-0.067 Sum_probs=149.7
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004813 420 NEEIRKAYELLGRMVVSS-VVPD--CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 496 (729)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|+...+..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345666777777776542 1222 345666677788888888888888888887554 677888888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
...|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99888888753 3346677778888888899999999888888764 43322222222334567788888888765543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 004813 577 GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA---G--LVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 650 (729)
. .|+...+ .......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|+..|++..+.+ ++
T Consensus 195 ~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 L-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred C-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2 2232222 2222335555444 344444432 1 111 23567888888889999999999999998873 44
Q ss_pred CHHhHHH
Q 004813 651 DSSMYNI 657 (729)
Q Consensus 651 ~~~~~~~ 657 (729)
|.+-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 5554443
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.5e-06 Score=76.78 Aligned_cols=352 Identities=14% Similarity=0.108 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY-LL 209 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li 209 (729)
..-+.+.+..+.+-.+++.|++++..-.+.. +.+......+-..|... .++..|..+++++-.. .|...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 3456777888889999999999999887653 33555666677777788 8999999999999875 555555543 34
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKG--LIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENK 287 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (729)
..+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+|+..+..++++.... .+..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecccc
Confidence 5667889999999999888763 333332222332 23578999999999887642 344455555666678999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHccCC-hHHHH
Q 004813 288 LEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVF----VDIVRGLCEVGK-FDESV 362 (729)
Q Consensus 288 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~-~~~a~ 362 (729)
++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++...++++.|++-.+..- ...+.+- ..|+ ...+.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHH
Confidence 999999999988765445566787655 455778999999999999988764222110 0000000 0000 00000
Q ss_pred HHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC--CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 363 NFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA--DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVP 440 (729)
Q Consensus 363 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 440 (729)
..+-+ .+|.-...+.+.|+++.|.+.+-.|..+.-. |+.+...+.-.-. .+++.+..+-+.-++...+ -
T Consensus 238 Sal~e-------AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SALVE-------AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HHHHH-------HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-C
Confidence 00000 0122333456778888888888888776654 6666655443222 2334444444444444444 3
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCM 503 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 503 (729)
...||..++-.||+..-++.|.+++.+-.....+ .+...|+.+-......-..++|.+-++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888888888888888888777654332111 23344443322222234555555544443
No 96
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.02 E-value=6.3e-05 Score=78.53 Aligned_cols=224 Identities=11% Similarity=0.062 Sum_probs=146.9
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..+++..|++-...+.++.+-.+...++..+ .+.+.|+.++|..+++.....+ ..+..++..+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 4577899999999988875333333344333 4678999999998888876665 448889999999999999999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------HHHH
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETN-R---------IESA 221 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~---------~~~A 221 (729)
.+|++.... .|+......+..++.|. +++..-.++--+|-+. .+-+...+=+++..+.... . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999764 46677778888889988 8877666655555543 2334444434444443321 1 2235
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 222 LDQFRRMHKKG-CCPNSRTFEIVIKGLIANSRVDDSVSIL-GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 222 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (729)
.+.++.+.+.+ ---+..-...-...+...|++++|.+++ ....+.-..-+...-+--++.+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666665543 1112222222234455677788888887 333343333444444566677777888888888777777
Q ss_pred hCC
Q 004813 300 ALD 302 (729)
Q Consensus 300 ~~~ 302 (729)
.+|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 766
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=1.2e-06 Score=88.76 Aligned_cols=299 Identities=11% Similarity=-0.037 Sum_probs=183.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc---cchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCD---SWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 453 (729)
..+...+...|+.+.+...+.+.......+.. ........+...|++++|.+.+++..+..+. +...+.. ...+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHH
Confidence 44445555667777766666665554443222 2223344566789999999999988876422 3333332 11222
Q ss_pred ----hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004813 454 ----KLCNYEDALRVFRQVSAQSLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV 528 (729)
Q Consensus 454 ----~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 528 (729)
..+..+.+.+.+.... ...| .......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 2344555555554421 1223 33444566677888999999999999998864 44567788888999999999
Q ss_pred HHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHH
Q 004813 529 DKAIRLRSLAYSSGTS-YTT--STYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALDVEAY-C--ILIQSMSEQNKLKDC 601 (729)
Q Consensus 529 ~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~A 601 (729)
++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 9999999988875422 222 3455678888999999999999999865432 1222211 1 223333344433333
Q ss_pred HHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC--------CCHHhHHHHHHHHHhcCCh
Q 004813 602 ALFFNVMVK---AGL--VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV--------LDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 602 ~~~~~~~~~---~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~ 668 (729)
.+. +.+.. ... ............++...|+.+.|..+++.+...... ......-....++...|++
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 322 22211 111 111122235666788899999999999988764211 1123334455666789999
Q ss_pred hHHHHHHHHHHhC
Q 004813 669 SQASYLLDLMLGK 681 (729)
Q Consensus 669 ~~A~~~~~~~~~~ 681 (729)
++|.+.+.+....
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-05 Score=78.82 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=82.2
Q ss_pred HHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 004813 69 VLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVN 148 (729)
Q Consensus 69 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (729)
.....|+++.|+..|-.+...+ +++...|..-..+++..|++++|+.=-.+-++.. |.-...|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 3456789999999999988775 5688889999999999999999887766666654 555678999999999999999
Q ss_pred hHHHHHHHHHhCCCcccHHhHHHHHHHH
Q 004813 149 GAMRVLVNMNSGGFKLSVDVFNVVLGAI 176 (729)
Q Consensus 149 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (729)
+|+.-|.+-.+.. +.+...++-+..+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999987753 34445555555555
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=5.7e-06 Score=83.87 Aligned_cols=200 Identities=14% Similarity=0.019 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHH--
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERY-PNV-REALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNV-- 171 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-- 171 (729)
...|..+...+...|+.+.+...+....+... ..+ ..........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44455555556666666666555555444321 111 2223333444556777777777777776542 233333331
Q ss_pred -HHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004813 172 -VLGAIVEEKRGFADFVFVYKEMVKAGIVPN-VDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 172 -ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 249 (729)
........ +....+.+.++... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 85 ~~~~~~~~~-~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFS-GMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccc-cCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 11111112 44444554444311 11222 3334455566777788888888888877653 2345566677777778
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 250 NSRVDDSVSILGEMFDLGI-QLEL--SFYTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 250 ~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
.|++++|...++...+... .++. ..|..+...+...|++++|..+|++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888888888877765432 1222 2355677777788888888888887754
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=9.7e-05 Score=85.34 Aligned_cols=372 Identities=10% Similarity=-0.033 Sum_probs=195.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI----VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
.....+...|++.+|........ +...... ........|+++.+...++.+.......+..........+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 33444666777776665443331 1111111 1223445677777777666553211111222233344455
Q ss_pred HhcCCHHHHHHHHHHHHhCCC------CCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 004813 283 CRENKLEEAIRLFKMMRALDL------MPDE--LTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~~~------~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 354 (729)
...|++++|...+......-- .+.. .....+...+...|++++|...+++..+.- +....+.... +
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~-a--- 493 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIV-A--- 493 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHH-H---
Confidence 677888888888877654210 0111 111222334567888888888888876531 1111110000 0
Q ss_pred cCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC----CCC--CcccchHHHHHHHhcCCHHHHHH
Q 004813 355 VGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR----KIA--DCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 355 ~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
.+.+...+...|++++|...+++.... +.. ...++..+...+...|++++|..
T Consensus 494 ---------------------~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~ 552 (903)
T PRK04841 494 ---------------------TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYE 552 (903)
T ss_pred ---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 033444455666777666666655432 111 11233455556677788888887
Q ss_pred HHHHHHHC----CCC--C-CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHH
Q 004813 429 LLGRMVVS----SVV--P-DCATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLVLDSISYSKLVEGLCQVEKITEAV 497 (729)
Q Consensus 429 ~~~~~~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 497 (729)
.+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+...|++++|.
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77765432 211 1 1223334444566678888888777776542 11112233444555666788888888
Q ss_pred HHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCChhHHHH
Q 004813 498 EVFCCMSKNGCS-LSSSSF-----NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT---STYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 498 ~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 568 (729)
+.+.++....-. .....+ ...+..+...|+.+.|.+++............ ..+..+..++...|++++|..
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887776442100 011111 11123344567788887776665432111111 113345566777788888888
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 569 VLAQMLVE----GCALD-VEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 569 ~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 713 ~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 713 ILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88777653 22221 234555666777888888888888887765
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=8.8e-06 Score=74.91 Aligned_cols=188 Identities=13% Similarity=0.015 Sum_probs=86.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 488 CQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
...|+...|++.+..+++.. +-|...+..-..+|...|++..|+.-++...+.. ..++.++-.+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 33455555555555555431 2244444444455555555555554444443332 233333334444445555555555
Q ss_pred HHHHHHHHcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccC
Q 004813 568 VVLAQMLVEGCALDVEA----YCIL---------IQSMSEQNKLKDCALFFNVMVKAGLVPDR---ETMLSLLHGLADGS 631 (729)
Q Consensus 568 ~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g 631 (729)
...++.++. .||... |..+ +......++|.++++-.+...+....... ..+..+-.++...|
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 555555443 222211 1100 11123344555555555555443211111 12223344455555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++.+|++...+..+. .+.|+.++..-+.+|.-..+++.|+.=|+...+
T Consensus 322 ~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred CHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666655554 233355555555566555556666555555554
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=6.7e-05 Score=69.31 Aligned_cols=307 Identities=9% Similarity=0.037 Sum_probs=166.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEEL---INCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 354 (729)
+...+...|++..|+.-|....+.+ +..|.++ ...|...|+..-|+.=+.++++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR-------- 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR-------- 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH--------
Confidence 4445556677777777777766632 2233333 3456667777777776776665 346543321
Q ss_pred cCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 355 VGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMV 434 (729)
Q Consensus 355 ~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 434 (729)
-.-...+.+.|.++.|..-|+.+.+..+.+ |...++.+-+....
T Consensus 110 ----------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~--------------~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 110 ----------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSN--------------GLVLEAQSKLALIQ 153 (504)
T ss_pred ----------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCc--------------chhHHHHHHHHhHH
Confidence 111233456666666666666666554420 11111111111000
Q ss_pred HCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004813 435 VSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS 514 (729)
Q Consensus 435 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 514 (729)
........+..+...|+...|+.....+++..+ .|...|..-..+|...|++..|+.=++...+.. ..+...
T Consensus 154 ------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~ 225 (504)
T KOG0624|consen 154 ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEG 225 (504)
T ss_pred ------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHH
Confidence 011112223334455666666666666665432 255566666666666666666666555554432 234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh----HHH-------H--HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTST----YTK-------I--MLGLVKLQRAKDLLVVLAQMLVEGCALD 581 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~-------l--~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 581 (729)
+-.+-..+...|+.+.++...++.++. .||... |.. | +......++|.++++..+..++..+...
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 445555556666666666666666554 233221 111 0 1223445667777777777766644422
Q ss_pred HHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 582 VEAYC---ILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 582 ~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
...|+ .+-.++...+++.+|++...+.++ +.|| ..++..-..+|.-...++.|+.-++...+.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 33333 344455667778888877777776 4555 666777777777777778888777777765
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=1.3e-07 Score=90.15 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV-DKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~ 536 (729)
+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++.+....+ +-+..+...++-+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 22344444444444444444444444444444332 22333333334333344443 33344444
Q ss_pred HHHH
Q 004813 537 LAYS 540 (729)
Q Consensus 537 ~~~~ 540 (729)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=3.2e-05 Score=89.30 Aligned_cols=262 Identities=13% Similarity=0.045 Sum_probs=135.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHhHHHHHHH
Q 004813 211 VLFETNRIESALDQFRRMHKKGCCPNS----RTFEIVIKGLIANSRVDDSVSILGEMFDL----GI-QLELSFYTCIIPM 281 (729)
Q Consensus 211 ~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~ 281 (729)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. ......+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666665442111111 22333444455566666666666655421 11 0112233444555
Q ss_pred HHhcCCHHHHHHHHHHHHh----CCCC--C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--HHhHHHHHH
Q 004813 282 LCRENKLEEAIRLFKMMRA----LDLM--P-DELTYEELINCLCENLRLDDANDILEDMIVI--GLTPT--DDVFVDIVR 350 (729)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~ 350 (729)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 5666666666666555432 1110 1 1223334444455556666666666555432 11111 222333444
Q ss_pred HHHccCChHHHHHHHHhhcC----CCC-CCc-----hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc----cchHHHHH
Q 004813 351 GLCEVGKFDESVNFLEDKCG----YVT-SPH-----NALLECCCNAGKFFLAKCILEKMADRKIADCD----SWNIPIRW 416 (729)
Q Consensus 351 ~~~~~~~~~~a~~~l~~~~~----~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~ 416 (729)
.....|+.++|.+.+..... ... ..+ ...+..+...|+.+.|...+............ .+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 55566666666655543211 100 000 11123445577888888777665442211111 13456667
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 004813 417 LCENEEIRKAYELLGRMVVS----SVVPD-CATYSAFVLGKCKLCNYEDALRVFRQVSAQS 472 (729)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 472 (729)
+...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88889999999988887643 22222 2355666678889999999999999988753
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=0.00027 Score=69.68 Aligned_cols=186 Identities=11% Similarity=-0.003 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR---KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.+++..+++.....-..-+.-+|..+.+---..- ..+.....++++.......-..+|..+++...+....+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4455566665544322223333333332211111 2555666666666544333445677788887888888888999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 570 LAQMLVEGCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 570 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
|.++.+.+..+ ++..+++++..||. ++.+.|.++|+--.+. +.-+.......+.-+.+.|+-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99988887666 67777888877764 6788888888876664 222344445677777788888888899998888755
Q ss_pred CCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 649 VLDS--SMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 649 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+++. .+|..++.--..-|+...+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5443 5888888888888998888888777664
No 106
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=1e-05 Score=78.39 Aligned_cols=218 Identities=12% Similarity=-0.014 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV--DKA 531 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A 531 (729)
.+..++|.....++++..+. +..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 34556666666666665333 3344544444555555 4677777777776653 33445566555455555542 556
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 004813 532 IRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ---NKL----KDCALF 604 (729)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~----~~A~~~ 604 (729)
+.+++++.+.. +-+..+|+....++.+.|+++++++.++++++.++. |...|+.....+.+. |.. ++++++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66777776655 456667777777777777777777777777776655 566666655554443 222 456666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--------------
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADG----SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG-------------- 666 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------- 666 (729)
..+++.... -|...|+.+...+... ++..+|.+.+.+..+. .+.+...+..|++.|+...
T Consensus 206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 666666422 2455666666666552 3345677777776654 2445667777777777532
Q ss_pred ----ChhHHHHHHHHH
Q 004813 667 ----LTSQASYLLDLM 678 (729)
Q Consensus 667 ----~~~~A~~~~~~~ 678 (729)
..++|.++++.+
T Consensus 284 ~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 284 EELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccHHHHHHHHHHH
Confidence 235677777776
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.4e-06 Score=86.13 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=55.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004813 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSL 623 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 623 (729)
+|+.+...|.-.|.-.|++++|...|+..+...+. |...||-|...++...+.++|+..|.+.++ ++|+ ......|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhh
Confidence 55555555555555566666666666666555333 455566666666666666666666666665 4454 2344445
Q ss_pred HHHHhccCChHHHHHHHHHHH
Q 004813 624 LHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~ 644 (729)
.-+|...|.+.+|.+.|-.++
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 555666666666666555443
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=8.2e-07 Score=84.75 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS----EQNKLKDCALFFNVMVKAGLVPDRETMLSLL 624 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (729)
.....+..|.+.++++.|.+.++.|.+. ..|.. ...+..++. -...+.+|..+|+++.+. ..++..+.+.+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 3334444555555555555555555433 11221 222222221 112355555555554432 334455555555
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT-SQASYLLDLMLG 680 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 680 (729)
.++...|++++|.+++++..+. .+.++.+...++-+....|+. +.+.++++++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5555555555555555555444 233444444455555555554 334445555443
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.3e-05 Score=79.42 Aligned_cols=259 Identities=16% Similarity=0.107 Sum_probs=183.5
Q ss_pred CCCCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 58 RHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISL 137 (729)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 137 (729)
.+.+.+......|.+.|+...|.-+|+.+.+++ |.+..+|..|..+.+..++-..|+..+++..+.+ |.+..++..|
T Consensus 283 ~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaL 359 (579)
T KOG1125|consen 283 IDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMAL 359 (579)
T ss_pred cCCCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 344566667777888899999999999998876 6778899999999999999999999999999987 7889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHH-----------HHHhcCCChhHHHHHHHHHHH-CCCCCCHHHH
Q 004813 138 VFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLG-----------AIVEEKRGFADFVFVYKEMVK-AGIVPNVDTL 205 (729)
Q Consensus 138 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-----------~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~ 205 (729)
.-.|...|.-.+|...++..+...++ |..+.. .+... ..+....++|-++.. .+..+|...+
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 99999999999999999988654311 000000 11111 223344555555543 3334677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004813 206 NYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE 285 (729)
Q Consensus 206 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (729)
..|.-.|--.|++++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++..+.. +.+...|.-.|...
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNL 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhh
Confidence 788877888889999999998887752 2256788888888888888889999998888754322 33444466678888
Q ss_pred CCHHHHHHHHHHHHh---C------CCCCCHhhHHHHHHHHHhcCChhHHH
Q 004813 286 NKLEEAIRLFKMMRA---L------DLMPDELTYEELINCLCENLRLDDAN 327 (729)
Q Consensus 286 g~~~~A~~~~~~m~~---~------~~~p~~~~~~~li~~~~~~~~~~~a~ 327 (729)
|.+++|.+.|-..+. + +..++..+|..|=.++.-.++.|.+.
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 888888888755442 2 11123345655555555555555433
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=1.2e-05 Score=87.47 Aligned_cols=216 Identities=16% Similarity=0.087 Sum_probs=120.5
Q ss_pred HHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 004813 396 LEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPD-----CATYSAFVLGKCKLCNYEDALRVFRQVSA 470 (729)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 470 (729)
|++.....+.+...|-..|....+.++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444444445556666666666666666666666666543 1111 12445555554555555666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHh
Q 004813 471 QSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY-TTST 549 (729)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 549 (729)
.. ..-..|..|...|.+.+.+++|.++++.|.++ +.-...+|...+..+.++.+-+.|..++.++.+.-.+. ....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 31 12234556666666666666666666666654 23455666666666666666666666666665542111 1122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD 616 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 616 (729)
....+..-.+.|+.+.+..+|+..+...++ ....|+.+++.-.++|+.+.+..+|++.+..++.|-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 233334445566666666666666655433 455666666666666666666666666666555543
No 111
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=2.4e-05 Score=75.78 Aligned_cols=204 Identities=8% Similarity=0.011 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC--HHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK--ITEA 496 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A 496 (729)
.+..++|+.++++++...+. +...|+..-..+...| ++++++..++.+.+...+ +..+|+...-.+.+.|+ .+++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 34566666666666654221 2334444444444455 456777777777665544 44455544444444444 2556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCh----hHHHHH
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL---QRA----KDLLVV 569 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~ 569 (729)
..+++++.+.. +-+..+|+....++...|+++++++.++++++.+ ..|..+|+.....+.+. |.. ++.++.
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66776666653 4466677777777777777777777777777665 34455565555544443 222 355666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
..+++...+. |...|+.+...+.. .++..+|.+++.+..+.+. .+......|+..|+.
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 6666665444 56667666666655 2344567777777665332 244556666666664
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=8.2e-06 Score=88.64 Aligned_cols=227 Identities=10% Similarity=0.005 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-----SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTY 550 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 550 (729)
+...|-..|......++.++|.++.++++.. +.+. ..+|.++++.....|.-+...++|+++.+.. ..-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 5566777888888889999999999988764 2221 3467777777777787888888999988742 234567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD---RETMLSLLHGL 627 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 627 (729)
..|...|.+.+..++|.++++.|.++ +.-....|..++..+.+.++-+.|..++.+..+. -|- .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 88888999999999999999999886 2246778889999999999989999999988874 333 23344455556
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHhhhhhcchhhh
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA--TTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~ 705 (729)
.+.|+.+.++.+|+..... .|.....|+.+++.-.++|+.+.+..+|+++...++.|-. ..|.--|.-=...|+.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6789999999999998887 6777889999999999999999999999999988876644 234444444445566655
Q ss_pred hhhc
Q 004813 706 RFAF 709 (729)
Q Consensus 706 ~~~~ 709 (729)
++..
T Consensus 1690 vE~V 1693 (1710)
T KOG1070|consen 1690 VEYV 1693 (1710)
T ss_pred HHHH
Confidence 5444
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=4.3e-06 Score=84.91 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=185.5
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+...+.+.|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +||...|..+........
T Consensus 402 ~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 567788999999999999999764 6788899999999999999999988874 789999999998877777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 799999999876543 22222233345799999999999988764 4567788888888889999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LVP 615 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p 615 (729)
...... +-+...||.+-.+|.+.++..+|...+.+..+.+.. +...|...+......|.+++|++.+.++.... ...
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 998764 345678999999999999999999999999998744 67778888888899999999999999988641 111
Q ss_pred CHHHHHHHHHH
Q 004813 616 DRETMLSLLHG 626 (729)
Q Consensus 616 ~~~~~~~l~~~ 626 (729)
|..+...++..
T Consensus 622 d~~vl~~iv~~ 632 (777)
T KOG1128|consen 622 DDEVLLIIVRT 632 (777)
T ss_pred cchhhHHHHHH
Confidence 44444444443
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00072 Score=66.80 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
.+....+++.+...-..--..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.+..+++.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 34444455554433222123345556666666666666666666666655444 55555666665553 55666666666
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.-.+.- ..++.--...++-+...++-..+..+|++....+..|+ ...|..+++--..-|++..+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554431 22223334455555666666666666666666533333 34566666666666666666666555544
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.5e-05 Score=81.09 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=103.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004813 172 VLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS 251 (729)
Q Consensus 172 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 251 (729)
+...+... |-...|..+|+++. .|.-+|..|...|+...|..+..+-.+. +||...|..+.+......
T Consensus 404 laell~sl-GitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 404 LAELLLSL-GITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHc-chHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 33444444 55555555555443 2444555555555555555555554442 455555555555544444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 252 RVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+. --..+|-.+..+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 455555555443321 111112222235556666666655444321 233455555555556666666666665
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 004813 332 DMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWN 411 (729)
Q Consensus 332 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (729)
.-+. ..||..+- ||.+-.+|.+.++-.+|...+.+..+-+..+...|.
T Consensus 544 rcvt--L~Pd~~ea------------------------------WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 544 RCVT--LEPDNAEA------------------------------WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred HHhh--cCCCchhh------------------------------hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 5544 23443332 244444555555555555555555444433445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMV 434 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~ 434 (729)
..+....+.|.+++|++.+.++.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHH
Confidence 55555555555555555555543
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1e-05 Score=72.85 Aligned_cols=161 Identities=14% Similarity=0.063 Sum_probs=118.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004813 519 IYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL 598 (729)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 598 (729)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++.++. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467778887776544332221 11 0122356678888888888877655 888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGL-ADGSQ--LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
++|...|++..+... -+...+..+..++ ...|+ .++|.+++++..+. .+.+...+..++..+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-DANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998532 2567777777764 66676 58999999999998 4668889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHhh
Q 004813 676 DLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 676 ~~~~~~g~~p~~~~~~~ll~~ 696 (729)
+++++. ..|+..-+ .+|.+
T Consensus 168 ~~aL~l-~~~~~~r~-~~i~~ 186 (198)
T PRK10370 168 QKVLDL-NSPRVNRT-QLVES 186 (198)
T ss_pred HHHHhh-CCCCccHH-HHHHH
Confidence 999885 35555443 33354
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=6.5e-08 Score=57.79 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 197 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 228 (729)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.1e-08 Score=57.62 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=16.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 267 GIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=7e-06 Score=77.45 Aligned_cols=185 Identities=11% Similarity=-0.003 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--Hh
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-S---SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT--ST 549 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 549 (729)
....+-.+...+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 55667777788888999999999999887753 33 2 45677788888899999999999998876422111 13
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004813 550 YTKIMLGLVKL--------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML 621 (729)
Q Consensus 550 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 621 (729)
+..+..++... |++++|.+.++++....+. +...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 44455555544 6778888888888776333 2222222111100 000 000 0112
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSDS--EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.+...|.+.|++++|...++++.+.. .+.....+..++.++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667889999999999999998872 1223568889999999999999999999988764
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.002 Score=67.92 Aligned_cols=535 Identities=10% Similarity=0.019 Sum_probs=282.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHH
Q 004813 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADF 186 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 186 (729)
...+++..|.+....+.+.. |....+...-.-.+.+.|+.++|..+++.....+.. |..+...+-..|.+. ++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~-~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL-GKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH-hhhhHH
Confidence 45688899999998887764 333222222233446899999999999988665533 788888888888888 999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-C---------hhHH
Q 004813 187 VFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS-R---------VDDS 256 (729)
Q Consensus 187 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~---------~~~a 256 (729)
..+|++.... .|+......+..+|++.+.+.+-.+.--+|-+. .+-+...+-.++....+.. . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999875 566666677777888887776654444444332 2234455555555444321 1 2346
Q ss_pred HHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 257 VSILGEMFDLG-IQLELSFYTCIIPMLCRENKLEEAIRLF-KMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 257 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (729)
.+.++.+.+.+ .--+..-.-.-...+...|++++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66667766544 2122222222234455688899999998 344443332344444456677888899999999999988
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 004813 335 VIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPI 414 (729)
Q Consensus 335 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 414 (729)
..| +|. |...+.. ..++++....... -..+...+..+...+..++..... ....|-+-+
T Consensus 254 ~k~--~Dd--y~~~~~s---------v~klLe~~~~~~a------~~~~s~~~~l~~~~ek~~~~i~~~--~Rgp~LA~l 312 (932)
T KOG2053|consen 254 EKG--NDD--YKIYTDS---------VFKLLELLNKEPA------EAAHSLSKSLDECIEKAQKNIGSK--SRGPYLARL 312 (932)
T ss_pred HhC--Ccc--hHHHHHH---------HHHHHHhcccccc------hhhhhhhhhHHHHHHHHHHhhccc--ccCcHHHHH
Confidence 876 443 3222221 1111111100000 001111122222222222222111 111222222
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH
Q 004813 415 RWLC---ENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSI-------SYSKLV 484 (729)
Q Consensus 415 ~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~ 484 (729)
.... .-|+.+++.-.|-+-. |-+| .|..=+..|...=..++...++....... ++.. .+.+.+
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHH
Confidence 2222 2345554433332211 1111 11111222222222333333333332211 0100 011111
Q ss_pred HHHHccC-----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHH
Q 004813 485 EGLCQVE-----KITEAVEVFCCMS---KNG------CSLSSS---------SFNILIYGLCVMRKVD---KAIRLRSLA 538 (729)
Q Consensus 485 ~~~~~~g-----~~~~A~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~~---~A~~~~~~~ 538 (729)
....-.| ..+.-..++.+.. ++| +-|+.. +.+.|++.+.+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111122 1222223332221 122 222222 3467888888888766 344444444
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 004813 539 YSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-R 617 (729)
Q Consensus 539 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~ 617 (729)
.... +.|..+--.++..|.-.|-...|.++|+.+.-+.+.-|...|. +..-+...|++.-+...+.....- +.-+ .
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 4432 3444555668888988899999999999887776766655553 344556778888888888876653 1111 1
Q ss_pred HHHHHHHHHHhccCChHHHHHHH---HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGI---NKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.+-..+..+| +.|.+.+..++. +++......--..+-+..++.++..++.++-...++.|.
T Consensus 543 E~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 2223344444 455555554443 344333222223345667788888888888888888876
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=5.6e-05 Score=81.82 Aligned_cols=234 Identities=10% Similarity=0.024 Sum_probs=133.2
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhc
Q 004813 376 HNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL 455 (729)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 455 (729)
+..|+..|...+++++|.++.+...+..+.....|-.+...+.+.++...+..+ .++......
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~~~~ 96 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhcccc
Confidence 366777777777777777777766666555555555555555555554443333 223333334
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 456 CNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 535 (729)
.++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+++++++.. +-|..+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 44444444444444432 234466677777777788888888888877765 45667777777777777 777777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 004813 536 SLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA-GLV 614 (729)
Q Consensus 536 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 614 (729)
.++... +...+++..+.++|.++....+. +...+ .++.+.+... |..
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki~~~~~~~ 220 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKVLGHREFT 220 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHHHhhhccc
Confidence 776543 45556677777777777665322 22121 1222222221 111
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 004813 615 PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLW 663 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 663 (729)
--..++..+-..|...++++++..+++.+.+. .+.|.....-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEH-DNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-CCcchhhHHHHHHHHH
Confidence 12233444445555566666666666666665 3344445555555554
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=3.6e-05 Score=72.62 Aligned_cols=185 Identities=8% Similarity=-0.025 Sum_probs=129.9
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H---H
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-L-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-S---S 513 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~ 513 (729)
.....+..+...+...|+++.|...|+++....+. | ....+..+..++.+.|++++|...++++.+.. |+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34566777788899999999999999999876432 1 12466778899999999999999999998753 32 2 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 004813 514 SFNILIYGLCVM--------RKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEA 584 (729)
Q Consensus 514 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 584 (729)
.+..+..++... |+.++|.+.|+.+.+.. |+. ..+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 455566666654 78899999999998764 433 22222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGL-VP-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
...+...|.+.|++++|...+++..+... .| ....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678889999999999999887521 12 3567888999999999999999999888765
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=4.6e-05 Score=68.67 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC--hhHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGL-VKLQR--AKDL 566 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A 566 (729)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456666666666666653 4567777777777777777777777777777765 34556666666653 55555 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.+++++..+.++. +...+..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777554 6666777777777777777777777777764
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=8.7e-05 Score=79.69 Aligned_cols=180 Identities=7% Similarity=-0.024 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
..+...+..|.....+.|..++|..+++.+.+.. +-+......+...+.+.+++++|+..+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4567788888888888899999999888888763 233456667778888888899998888888887554 56667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
..++.+.|++++|..+|+++...+ .-+...+..+..++...|+.++|...|++..+. ..+....|+.++.- .
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------L 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------H
Confidence 788888899999999999888732 223678888888888889999999998888887 34445555544332 2
Q ss_pred hHHHHHHHHHHhCCC----CCCHHHHHHHHhhhh
Q 004813 669 SQASYLLDLMLGKGW----VPDATTHGLLVGSSV 698 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~----~p~~~~~~~ll~~~~ 698 (729)
..-...++++.-.+. ......+...|.-+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 233445555543322 222334455554444
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=1.6e-05 Score=67.51 Aligned_cols=101 Identities=7% Similarity=-0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+. .+.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 3345556666777777777777766642 224556666666677777777777777777765 35566667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 665 EGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.|++++|++.|++..+ ..|+...
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~~~ 127 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYADAS 127 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCChH
Confidence 7777777777777665 3454433
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=6.7e-05 Score=67.18 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..+-..+...|+-+.+..+....... ...+.......+....+.|++..|...+++..... .+|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444555555555555554443322 13334444456666666666666666666666543 33666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 596 NKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
|+.++|..-|.+..+. .| +...++.+.-.|.-.|+.+.|..++...... ..-|..+-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666666663 22 2445556666666666666666666666655 233555566666666666776666665
Q ss_pred HHH
Q 004813 675 LDL 677 (729)
Q Consensus 675 ~~~ 677 (729)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=8.5e-05 Score=66.52 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004813 446 SAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM 525 (729)
Q Consensus 446 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (729)
..+-..+...|+-+....+......... .|......++....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3334445555555555555544333222 244445556666666666666666666665543 45666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFF 605 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 605 (729)
|+++.|..-|.+..+.. ..++..++.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666665543 233444555555555566666666666665554332 4444455555555666666666554
Q ss_pred HH
Q 004813 606 NV 607 (729)
Q Consensus 606 ~~ 607 (729)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00057 Score=61.30 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=61.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----c
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----E 285 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 285 (729)
..|+..|++++|++...... +......=...+.+..+++-|.+.++.|.+. .+..+.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 44555666666666554411 2222222233444555566666666666552 333444444444433 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 286 NKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVI 336 (729)
Q Consensus 286 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (729)
+++.+|.-+|++|.++- .|+..+.+-...++...|++++|..++++.+..
T Consensus 187 ek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44666666666665532 255555666666666666666666666666554
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=1.7e-05 Score=67.29 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=86.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 569 VLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 569 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
.+++.+...+. +......+...+...|++++|.+.++.+...+ ..+...+..+..++...|++++|..++++..+. .
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-D 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 44555554322 33445566677778888888888888887743 235677777888888888888888888888776 4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 004813 649 VLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 649 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 695 (729)
+.+...+..+...|...|++++|.+++++..+. .|+...+..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 566777888888888888888888888888874 466655444433
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=7.4e-05 Score=80.19 Aligned_cols=148 Identities=12% Similarity=0.034 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHH
Q 004813 92 FQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNV 171 (729)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 171 (729)
+++++..+-.+..+..+.|++++|+.+++...+.. |.+...+..++.++.+.+++++|...+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 67889999999999999999999999999999886 7788999999999999999999999999998764 444555666
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 004813 172 VLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244 (729)
Q Consensus 172 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 244 (729)
+-.++.+. |++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+. ..|....|+..+
T Consensus 160 ~a~~l~~~-g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEI-GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHh-cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 66677777 99999999999999843 335788999999999999999999999998774 234445554443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00023 Score=69.63 Aligned_cols=139 Identities=14% Similarity=0.009 Sum_probs=89.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD-VEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 599 (729)
.+...|++++|+..++.+.... +-|+..+......+...++.++|.+.++++... .|+ ...+-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3445567777777777766542 344444555556667777777777777777765 333 455556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+|+.+++..... .+-|+..|..|.++|...|+..++... ....|...|++++|+..+....
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777664 334566777777777777766555433 3344556677777777777776
Q ss_pred hC
Q 004813 680 GK 681 (729)
Q Consensus 680 ~~ 681 (729)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 65
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=2.8e-05 Score=66.10 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
+..+..++...|++++|...|+......+. +...|..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 334555666667777777777766665433 56666666666777777777777777776642 2245566666666667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 630 GSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
.|+.++|+..+++..+. .+.++..|...
T Consensus 105 ~g~~~eAi~~~~~Al~~-~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM-SYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence 77777777777776665 23344444333
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.0005 Score=74.69 Aligned_cols=151 Identities=7% Similarity=0.108 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcC
Q 004813 308 LTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387 (729)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~ 387 (729)
.++..+..+|-+.|+.+++..+++++++.. +-|....+.+.-.++.. ++++|++++. ..+..+...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~-----------KAV~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK-----------KAIYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH-----------HHHHHHHhhh
Confidence 344455555555555555555555555543 22344454555555554 5555555542 2233356666
Q ss_pred ChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHhhcCCHHHHHHHHH
Q 004813 388 KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVS-SVVPDCATYSAFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 466 (729)
++..+.+++.++....+.+... -..+.+.+... |..--..++..+-..|-..++++++..+++
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~----------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDF----------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred cchHHHHHHHHHHhcCcccchH----------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7788888888887775543222 22333333322 222234455555566677777888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH
Q 004813 467 QVSAQSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~~~~ 488 (729)
.+.+.... |.....-++.+|.
T Consensus 248 ~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCc-chhhHHHHHHHHH
Confidence 88776544 5566666666665
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00036 Score=62.51 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 383 CCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE----NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
+.+..+++.|.+.+++|.+-+ +..+.+.|.+++.+ .+....|.-+|++|-++ ..|+..+.+....++...+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 344455555555555555443 33344444444332 33455555555555443 345555555555555555566
Q ss_pred HHHHHHHHHHHhCCC
Q 004813 459 EDALRVFRQVSAQSL 473 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~ 473 (729)
++|..+++.......
T Consensus 224 eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 224 EEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHHHHHHhccC
Confidence 666665555555433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00083 Score=59.82 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=98.7
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+.-+....|+.+.|...++++..+-+.+...--.-..-+-..|++++|+++++.+++.+ +.|..++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3444455566777777777777776653333332222333445677777777777777765 335555555555555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR---KVDKAIR 533 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 533 (729)
+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. +.++..+..+...+...| +.+.|.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666654 44577777777777777777777777777776642 234444455555544433 3455666
Q ss_pred HHHHHHHcC
Q 004813 534 LRSLAYSSG 542 (729)
Q Consensus 534 ~~~~~~~~~ 542 (729)
.|.+..+..
T Consensus 213 yy~~alkl~ 221 (289)
T KOG3060|consen 213 YYERALKLN 221 (289)
T ss_pred HHHHHHHhC
Confidence 666666543
No 136
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.22 E-value=0.0065 Score=58.86 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=113.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG-CALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETM-LSL 623 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l 623 (729)
-...|...+++..+....+.|..+|-++.+.| +.+++..+++++..++ .|+...|-.+|+--... .||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567778888778888889999999998887 6678888888887766 47888888888876653 4454443 456
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcc
Q 004813 624 LHGLADGSQLHLVSSGINKLVSDSEVLD--SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE 701 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 701 (729)
+.-+..-++-+.|..+|+..++. +..+ ..+|..+|.--..-|+...|..+=++|.+ +.|...+...+++.+.-..
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhc
Confidence 66677888888999999977665 3334 56899999988899999999888888887 4677777777777765333
No 137
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.16 E-value=0.0091 Score=58.09 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=91.9
Q ss_pred HHHHcCCChHHHHHHHHHhhhCCCCCC---CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 004813 68 RVLDNTNDLSSALKIFKWVSIQKRFQH---TAD-TYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFS--F 141 (729)
Q Consensus 68 ~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 141 (729)
-+|++++++++|.++|..+-......| ... .-+.++.+|. ..+.+.+...+....+.. +. ..|..+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~-~~--s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF-GK--SAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc-CC--chHHHHHHHHHH
Confidence 357789999999999998865421111 112 2345566654 467788887777776653 22 233333333 3
Q ss_pred HhcCChhhHHHHHHHHHhC--CCcc------------cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC----CCCHH
Q 004813 142 VNHYRVNGAMRVLVNMNSG--GFKL------------SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGI----VPNVD 203 (729)
Q Consensus 142 ~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~ 203 (729)
-+.+++++|.+.+...... +..+ |-..-+.....+... |.+.++..+++++...=. ..+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~-g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET-GRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 4888999999998887544 2222 112223455667778 999999999988876533 37888
Q ss_pred HHHHHHHHHHh
Q 004813 204 TLNYLLEVLFE 214 (729)
Q Consensus 204 ~~~~li~~~~~ 214 (729)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 99987666654
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0015 Score=58.27 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=129.7
Q ss_pred hhcCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004813 453 CKLCNYEDALRVFRQVSA---QS-LVLDSIS-YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK 527 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 527 (729)
....+.++..+++.++.. .| ..++..+ |..+.-+....|+.+.|...++.+...- +-+..+-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 345568888888888874 35 3444433 4444555566788888888888887752 3333333322333456688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 528 VDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
+++|+++++.+.+.+ +.|..++.-=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888888888888776 566677766666666777777888887777776 455888888888888888888888888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhccC---ChHHHHHHHHHHHhC
Q 004813 608 MVKAGLVPD-RETMLSLLHGLADGS---QLHLVSSGINKLVSD 646 (729)
Q Consensus 608 ~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 646 (729)
++=. .|. ...+..+...+...| +++.|.+++.+..+.
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8863 444 444455555544433 566788888888776
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.00052 Score=67.25 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=107.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQ 632 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 632 (729)
.-.+...|.+++|+..++.++..-+. |...+....+.+.+.++.++|.+.+++++. ..|+ ......+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCC
Confidence 34456788999999999999887433 666667778899999999999999999998 4666 6677788999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 633 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
..+|+.++++.... .+.|+..|..|..+|...|+..+|....-+....
T Consensus 390 ~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 390 PQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999987 6889999999999999999999999988887754
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=0.00012 Score=62.03 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.++. +...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCC
Confidence 3333444444444444444443332 223333344444444444444444444444333211 23333333444444444
Q ss_pred HHHHHHHHHHHHH
Q 004813 598 LKDCALFFNVMVK 610 (729)
Q Consensus 598 ~~~A~~~~~~~~~ 610 (729)
+++|.+.|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00016 Score=61.78 Aligned_cols=126 Identities=12% Similarity=0.065 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR--ETMLSLLH 625 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 625 (729)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 47778888888888887643311 223334556778889999999999998886522221 24445677
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.+...|++++|+..++..... ...+..+...+++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999998775433 345567778899999999999999988864
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00015 Score=71.77 Aligned_cols=124 Identities=15% Similarity=0.053 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG 630 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 630 (729)
..|+..+...++++.|+.+++++.+.. |+. ...+++.+...++-.+|.+++.+.++.. +-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 345555566677888888888887763 443 3346677777777788888888877642 22555666666677888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 631 SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 631 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++.+.|+++.+++.+. .|.+..+|..|+.+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887 566667888888888888888888888887663
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=9.1e-06 Score=49.58 Aligned_cols=34 Identities=44% Similarity=0.652 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999999973
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.6e-05 Score=48.48 Aligned_cols=33 Identities=36% Similarity=0.645 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004813 204 TLNYLLEVLFETNRIESALDQFRRMHKKGCCPN 236 (729)
Q Consensus 204 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 236 (729)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777765
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2e-05 Score=47.57 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCP 235 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 235 (729)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.2e-05 Score=47.38 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
.+|+.++++|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.0009 Score=57.19 Aligned_cols=125 Identities=10% Similarity=0.128 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccH--HhHHHH
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKERYPNV---REALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSV--DVFNVV 172 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l 172 (729)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+.. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3666666666666666653 222 334444556666677777777777777654422221 122334
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRR 227 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 227 (729)
...+... |++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~-~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQ-GQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHc-CCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555 6777777766553322 22334555566666667777777766654
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00065 Score=67.37 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=81.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
...|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555556677777777777777653 44 33346666666677777777777776543 3345555555566777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
.++++.|+++.+++.+..+. +..+|..|..+|...|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77778888887777776332 45577778888888888888877776554
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.044 Score=56.34 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCcc--------cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG-GFKL--------SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGI 198 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~ 198 (729)
.|.+..|..+...-...-.++.|...|-+.... |++. +...-.+=+.++. |.+++|+++|-++-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~---g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY---GEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh---cchhHhhhhhhccchh--
Confidence 355666666666655555566666555544221 1110 1111111122222 6666666666555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCC--PNSRTFEIVIKGLIANSRVDDSVSILGE 262 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (729)
...|..+.+.|+|-...++++.-- .+.. --...|+.+...++....|++|.+.+..
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123455555666665555553210 0000 0123455555555555555555555543
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00048 Score=66.12 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS-MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL 627 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (729)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. +..+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555556666666666653321 122333322222 22234455566666666654 333455555666666
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDS---SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
.+.|+.+.|+.+|++.... ++++. ..|...++.-.+.|+.+.+.++.+++.+ +-|+...+..++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 6666666666666666654 22222 3666666666666776666666666665 344544555555544
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00052 Score=68.29 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 004813 472 SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN--GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTST 549 (729)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 549 (729)
+...+......+++.+....+++.+..++-+.... ....-..|..++++.|...|..+.++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446667777788887788888888888888764 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
++.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888776666666666555555544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00059 Score=53.41 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHH
Confidence 4445566667777777877777777642 223355666777777778888888888777776 34455677777788888
Q ss_pred cCChhHHHHHHHHHHh
Q 004813 665 EGLTSQASYLLDLMLG 680 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (729)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888877765
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0037 Score=59.91 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=56.6
Q ss_pred HHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 004813 556 GLVKLQRAKDLLVVLAQMLVE---GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGS 631 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 631 (729)
-..+.|++..|.+.|.+.+.. +..|+...|........+.|+..+|+.--++..+ +.|. ...|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 345778888888888887764 3445566666666677778888888877777765 2221 111222223445567
Q ss_pred ChHHHHHHHHHHHhC
Q 004813 632 QLHLVSSGINKLVSD 646 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~ 646 (729)
+|++|.+-+++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777765
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00036 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=58.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLH 634 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 634 (729)
-+.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 345566666666666666665444 555566666666666666666666666655 3443 345666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHH
Q 004813 635 LVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
+|++.|++..+. .|+..+|.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHH
Confidence 666666666664 44444443
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.052 Score=51.93 Aligned_cols=289 Identities=12% Similarity=0.043 Sum_probs=181.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHhhcCCHHHH
Q 004813 386 AGKFFLAKCILEKMADRKIADCDSWNIPIR--WLCENEEIRKAYELLGRMVVSSVVPDCA--TYSAFVLGKCKLCNYEDA 461 (729)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 461 (729)
.|+-..|.++-.+..+.=..|....-.++. +-.-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555444433211113333333332 233468888888888888742 2221 122333344578889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHH
Q 004813 462 LRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG-CSLSSSS--FNILIYGLC---VMRKVDKAIRLR 535 (729)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~A~~~~ 535 (729)
..+-+...+.-.. -...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9888887765433 45677888899999999999999998775532 2333321 122222221 123455565555
Q ss_pred HHHHHcCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 004813 536 SLAYSSGTSYTTS-TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA-GL 613 (729)
Q Consensus 536 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 613 (729)
.+..+. .||-. .-..-..++.+.|+..++-.+++.+-+..+.|++.. +..+.+.|+ .++.=+++..+. .+
T Consensus 253 ~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC--cHHHHHHHHHHHHhc
Confidence 555443 45533 223345678899999999999999998866665432 222344444 444444444432 35
Q ss_pred CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHH
Q 004813 614 VPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE-GLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 614 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
+|| ......+..+-...|++..|..--+..... .|....|..|.+.-... ||-.++..++-+..+..-.|+..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 555 456667777888899999988888777764 78888999999888776 99999999999988766566543
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00064 Score=52.31 Aligned_cols=68 Identities=22% Similarity=0.477 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGI-VPNVDTLNYLLEVLFET--------NRIESALDQFRRMHKKGCCPNSRTFEIVIKGLI 248 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 248 (729)
+++.....+|+.++..|+ -|+..+|+.++.+.++. ++.-..+.+|+.|...+++|+..||+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 44444444444444332 123345556666666666666666666665544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.0015 Score=53.72 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCHHhHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLV--PDRETMLSLLHGLADGSQLHLVSSGINKLVSDS--EVLDSSMYNILI 659 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 659 (729)
++..++..+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|.+.++.+.... .+.....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666777777777777777653211 112345556667777777777777777776641 111244566777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004813 660 NGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777764
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00067 Score=67.55 Aligned_cols=122 Identities=8% Similarity=0.104 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004813 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKK--GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYT 276 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (729)
+.+......+++.+....+++.+..++-+.+.. ....-..|.+++++.|...|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334555555666665666666666666666553 121223344566677777777777777666666667667777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004813 277 CIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCEN 320 (729)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 320 (729)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777666666555445555555555554443
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.00089 Score=66.83 Aligned_cols=87 Identities=10% Similarity=-0.039 Sum_probs=42.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 635 (729)
+...|++++|++.|+++++..+. +...|..+..+|...|++++|+..++++++. .| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445555555555555554332 3444444455555555555555555555542 22 23344444445555555555
Q ss_pred HHHHHHHHHhC
Q 004813 636 VSSGINKLVSD 646 (729)
Q Consensus 636 A~~~~~~~~~~ 646 (729)
|+..|+++.+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.00073 Score=52.03 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=38.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 004813 244 IKGLIANSRVDDSVSILGEMFDLGI-QLELSFYTCIIPMLCREN--------KLEEAIRLFKMMRALDLMPDELTYEELI 314 (729)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li 314 (729)
|..+...+++...-.+|+.++..|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555555444331 2334455556666666666666666665
Q ss_pred HHHH
Q 004813 315 NCLC 318 (729)
Q Consensus 315 ~~~~ 318 (729)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.0016 Score=53.51 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCA--LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV--PDRETMLSLLHG 626 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~ 626 (729)
..++..+.+.|++++|.+.|..+...... .....+..+..++.+.|++++|.+.|+.+...... .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444455555555555555555543211 01233444555555555555666655555543111 112344455555
Q ss_pred HhccCChHHHHHHHHHHHhC
Q 004813 627 LADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~ 646 (729)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55556666666666655554
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.0086 Score=57.87 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=23.3
Q ss_pred HHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 555 LGLVKL-QRAKDLLVVLAQMLVE----GCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 555 ~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..|... |++++|++.|++..+. + .+. ..++..+...+.+.|++++|.++|++...
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444 5555555555554432 1 100 12233344445555555555555555544
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=8.7e-05 Score=56.35 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 595 QNKLKDCALFFNVMVKAGL-VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
.|++++|+.+++++.+... .++...+..+..+|.+.|++++|..++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776422 11344455566777777777777777766 2221 1233444455777777777777777
Q ss_pred HHHH
Q 004813 674 LLDL 677 (729)
Q Consensus 674 ~~~~ 677 (729)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7e-05 Score=43.98 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887764
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.0047 Score=59.69 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
..+...+.+.|++++|.++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444455555555555554443
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0023 Score=58.89 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=86.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 599 (729)
.-..+.+++.+|+..|.++++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34567899999999999999875 567778888889999999999999999988876544 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
+|.+.|++.++ +.|+..+|-.=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999999987 7888877655443
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.032 Score=47.44 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCc-ccHHhHHHH
Q 004813 94 HTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFK-LSVDVFNVV 172 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 172 (729)
|+...-..+...+.+.|++.+|...|++...--+-.+......+.++....+++..|...++.+-+.+.. .++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444556666666666666666666655444555666666666666666666666666666443211 112223333
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESAL 222 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 222 (729)
-+.+... |.+..|+..|+..... -|+...-......+.++|+.+++.
T Consensus 167 aR~laa~-g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQ-GKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhc-CCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4455555 6666666666666554 233222222233344455444443
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00011 Score=43.09 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (729)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0054 Score=51.34 Aligned_cols=92 Identities=4% Similarity=0.042 Sum_probs=55.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQ 632 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 632 (729)
+..-+...|++++|.++|+-+...++. +..-|-.|.-++-..|++++|+..|........ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 334445566666666666666655433 445555566666666666666666666666432 245555666666666666
Q ss_pred hHHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSD 646 (729)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (729)
.+.|++.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0018 Score=50.51 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=6.3
Q ss_pred HHHHhcCCHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFN 606 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~ 606 (729)
..+...|++++|...+.
T Consensus 76 ~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 76 LAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 33333333333333333
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.50 E-value=0.00093 Score=63.59 Aligned_cols=132 Identities=12% Similarity=0.013 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLV----EGCA-LDVEAYCILIQSMSEQNKLKDCALFFNVMVKA----G-LVPDRE 618 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~p~~~ 618 (729)
.|..|.+.|.-.|++++|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.|...... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666777888888766543222 2211 12345667788888888888888888765432 2 122345
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSD-----SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..+|...|.-..++++|+.++.+-... ...-....+.+|.++|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667777777777888888877653321 1222445677888899888988888877766544
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.0036 Score=55.38 Aligned_cols=87 Identities=5% Similarity=-0.055 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLH 625 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 625 (729)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 455566666667777777777777665433222 245566666666777777777777766663 23 2444445555
Q ss_pred HHhccCChHHHH
Q 004813 626 GLADGSQLHLVS 637 (729)
Q Consensus 626 ~~~~~g~~~~A~ 637 (729)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544333
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0063 Score=56.47 Aligned_cols=126 Identities=14% Similarity=0.183 Sum_probs=98.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHH
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS---QLHLVSSGINKL 643 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 643 (729)
..-++.-+..++. |...|-.|..+|...|+++.|..-|.+..+. -.++...+..+..++..+. ...++..+|+++
T Consensus 142 ~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3334444555555 8999999999999999999999999999985 2335667777777765433 467899999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 644 VSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 644 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
... .+.|+.....|...+...|++.+|...|+.|++. -|....+..+|...
T Consensus 220 l~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 220 LAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred Hhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 998 4678888889999999999999999999999985 45556666666553
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00022 Score=54.14 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 004813 73 TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMR 152 (729)
Q Consensus 73 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 152 (729)
+|+++.|+.+|+.+....+..++...+..+..++.+.|++++|..+++. ...+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566666666666655432111333344456666666666666666655 2222 1233444444666666666666666
Q ss_pred HHHH
Q 004813 153 VLVN 156 (729)
Q Consensus 153 ~~~~ 156 (729)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.45 E-value=0.0036 Score=62.50 Aligned_cols=92 Identities=9% Similarity=0.001 Sum_probs=63.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRA 563 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 563 (729)
...+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777777653 3455666677777777777777777777777654 34556666777777777777
Q ss_pred hHHHHHHHHHHHcC
Q 004813 564 KDLLVVLAQMLVEG 577 (729)
Q Consensus 564 ~~A~~~~~~~~~~~ 577 (729)
++|+..|++.++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0034 Score=52.52 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..-.+...+...|++++|..+|+-+... .| +..-|..|.-+|...|++++|+..+....... +.|+..+..+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3334555667899999999999999884 44 45677788889999999999999999999984 67889999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004813 663 WKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~ 681 (729)
...|+.+.|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.0057 Score=49.34 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL---DSSMYNILINGLW 663 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 663 (729)
..++-..|+.++|+.+|++..+.|+... ...+..+...+...|++++|..++++.... .+. +......+.-++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHH
Confidence 3455667777777777777777665544 335556667777777777777777777765 222 2333344555677
Q ss_pred hcCChhHHHHHHHHHH
Q 004813 664 KEGLTSQASYLLDLML 679 (729)
Q Consensus 664 ~~g~~~~A~~~~~~~~ 679 (729)
..|+.++|++++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7778877777776554
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.0094 Score=62.31 Aligned_cols=70 Identities=14% Similarity=-0.024 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
+...|..+.-.....|++++|...++++.+.+ |+...|..++..+...|+.++|.+.+++..+. .|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 44556666555556678888888888887763 56777777888888888888888888777763 455444
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.21 Score=51.61 Aligned_cols=203 Identities=10% Similarity=0.088 Sum_probs=124.9
Q ss_pred cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 163 KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA-GIVPNVD--------TLNYLLEVLFETNRIESALDQFRRMHKKGC 233 (729)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 233 (729)
.|.+..|..+....... -.++-|+..|-+...- |++.-.. .-.+=+.+ --|++++|.++|-+|-++.
T Consensus 689 nPHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 47778888777766665 6777777777655431 2211000 00111122 2478888888887776542
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 004813 234 CPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE----LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELT 309 (729)
Q Consensus 234 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 309 (729)
..|..+.+.|||-.+.++++.- |...| ...|+.+.+.++....+++|.+.|..-...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 3355666777877666655432 11111 346777888888888888888887654321
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCCh
Q 004813 310 YEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKF 389 (729)
Q Consensus 310 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 389 (729)
...+.++.+..++++-+.+...+ +.+....-.+..++...|..++|.+.+-+...+ .+.+..|....++
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQW 894 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHH
Confidence 12456666666666655544443 345556667778888899999888876554333 5677778888888
Q ss_pred hHHHHHHHHH
Q 004813 390 FLAKCILEKM 399 (729)
Q Consensus 390 ~~a~~~~~~~ 399 (729)
.+|.++-++.
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8887776553
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0028 Score=60.88 Aligned_cols=128 Identities=10% Similarity=0.056 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV-MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGL 557 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 557 (729)
+|..+++..-+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555555555555322 2223333333333222 34444455555555544 234445555555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+.++.+.|..+|++.... .|.. ..|..+++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1222 3555555555566666666666666655
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0094 Score=52.72 Aligned_cols=61 Identities=16% Similarity=-0.043 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS--SSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444555555555555555544321111 23344444444445555555555444444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.067 Score=45.57 Aligned_cols=124 Identities=14% Similarity=0.121 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHH
Q 004813 511 SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG---CALDVEAYCI 587 (729)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~ 587 (729)
+...--.|..+....|+..+|...|++...--+.-|......+.++....++...|...++++.+.. -.||. .-.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHH
Confidence 3333334444444444444444444444433333344444444444444444444444444444431 11221 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
+.+.|...|.+.+|..-|+.... ..|+..........+.++|+..++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 33444444555555555544444 23333333333333444444444433
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.045 Score=51.21 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREA---LISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.+......+.+.|++++|...|+.+.... |.+... ...++.++.+.+++++|...+++..+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33334445555666666666666665543 222222 244555666666666666666666543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.37 E-value=0.00063 Score=48.55 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD 686 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 686 (729)
+...+...|++++|++.|+++.+. .+.+...|..++.++...|++++|.++|+++.+. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 445677788888888888888887 3556778888888888888888888888888763 455
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0022 Score=56.22 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 004813 80 LKIFKWVSIQKRFQHTADTYCKMILKLGLA-----GNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVL 154 (729)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 154 (729)
...|+.+..+ ..+..+|..+++.+.+. |..+-....+..|.+.|+.-+..+|+.|+..+=+ |.+
T Consensus 34 ~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f------- 102 (228)
T PF06239_consen 34 EELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF------- 102 (228)
T ss_pred HHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc-------
Confidence 3445554222 45677787777777653 4455556666666666666666666666666532 111
Q ss_pred HHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 155 VNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETN 216 (729)
Q Consensus 155 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 216 (729)
.|.. .+.++..-+- .+-+-+++++++|...|+-||..++..|++.+.+.+
T Consensus 103 --------vp~n-~fQ~~F~hyp---~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 103 --------VPRN-FFQAEFMHYP---RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------cccc-HHHHHhccCc---HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111 1111111111 334566667777777777777777777777665443
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.052 Score=50.76 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=98.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGCSLSS-SSF---NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
....+...|++++|.+.|+++...- |+. ... -.++.++.+.+++++|...+++..+........-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3334455677777777777776642 322 222 3455666777777777777777776543322233333333322
Q ss_pred h--cC---------------C---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 559 K--LQ---------------R---AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 559 ~--~~---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
. .+ + ..+|...|+++++. -|+. .-..+|...+..+... . ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~---l-a~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR---L-AK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH---H-HH
Confidence 1 10 1 23344555555544 2222 2223443333333221 0 01
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.-..+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124556678888888888888888877 333344567778888888999888888776654
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0053 Score=53.91 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004813 199 VPNVDTLNYLLEVLFE-----TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELS 273 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 273 (729)
..|..+|..++..|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3455566666665553 24455555555556555666666666665555432 1111 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR 322 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 322 (729)
...... - .-.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~F~-h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM-H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc-c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111000 0 122456677777777777777777777777777765554
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.0048 Score=54.39 Aligned_cols=63 Identities=11% Similarity=-0.129 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY--TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
.|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555554432111 1224445555555555555555555555543
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.036 Score=49.94 Aligned_cols=138 Identities=10% Similarity=-0.044 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML-----SLLH 625 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~ 625 (729)
+.++..+.-.|.+.-...++.+.++....-+......+++.-.+.|+.+.|..+|++..+..-..|..+.+ ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555555555555444455555555555556666666666666554432222222222 2222
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
.|.-++++..|...+.+.... .+.++...|.-+-++.-.|+..+|++.++.|+.. .|...+.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 344455555555555555554 2334444444444445556666666666666652 45444444
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.31 E-value=0.2 Score=49.20 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=75.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHH--
Q 004813 105 KLGLAGNVEEMEGLCQNMVKERYPNVR------EALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAI-- 176 (729)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-- 176 (729)
.+-+++++.+++.+|.++.+.. ..+. ...+.++++|. .++.+.....+....+. .| ...|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4567788888888888876653 2221 22334566664 33455555555555332 12 22233333322
Q ss_pred HhcCCChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChh
Q 004813 177 VEEKRGFADFVFVYKEMVKA--GIVP------------NVDTLNYLLEVLFETNRIESALDQFRRMHKK----GCCPNSR 238 (729)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~ 238 (729)
.+. +.+..|.+.+....+. +..| |-..=+..+..+...|++.++..++++|... ....+..
T Consensus 90 Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 234 7788888877776654 2222 1111244556667777777777777776553 2335666
Q ss_pred hHHHHHHHHH
Q 004813 239 TFEIVIKGLI 248 (729)
Q Consensus 239 ~~~~li~~~~ 248 (729)
+|+.++-.++
T Consensus 169 ~yd~~vlmls 178 (549)
T PF07079_consen 169 MYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHh
Confidence 7776554444
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.19 Score=48.90 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
+.+..+.-+...|+...|.++-.+. . .|+..-|-..+.+++..++|++-.++... .- .+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHH
Confidence 4555666777888888888886665 2 46888899999999999999987776432 12 2366788899999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRR 706 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 706 (729)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+.--+. -|...+..+...|...++...+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~~~~~~~~~ 310 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCPGNNDQLIA 310 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCCCCChHHHH
Confidence 9999999998887722 356778889999999997764333 3555556666655554444333
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.00062 Score=49.15 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=41.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
..|++++|++.|+++.+. .|.+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 456777777777777766 3556666777777777777777777777777763 4665444444
No 193
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.32 Score=51.68 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPN--VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
......-+..+.+...++-|..+...- +.++ ..........-+.+.|++++|...|-+-+.. +.|+ .++
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 334556677788888888888776543 2111 1233444445556789999998888776543 2232 234
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRV 253 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 253 (729)
.-+... .....--.+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-.
T Consensus 405 ~kfLda-q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDA-QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHhcCH-HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 444555 5666777788888888865 66667788999999999888777666544 2221 12244566777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 254 DDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (729)
++|..+-..... .......+ +-..|++++|++.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 777666554432 23333333 345778999998887774
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.4 Score=50.31 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 61 LSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNV--EEMEGLCQNMVKERYPNVREALISLV 138 (729)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~ 138 (729)
++.+-++..|...+.+..|.++-.|+.... ....+.|......+.+..+. +++.+.+++=..... ...-.|..+.
T Consensus 438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA 514 (829)
T KOG2280|consen 438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIA 514 (829)
T ss_pred hchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHH
Confidence 444556777778889999999999984332 22256777777777776433 223333333222212 2234566677
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCc----ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLVNMNSGGFK----LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVK 195 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 195 (729)
+.-...|+.+-|..+++.=...+.. .+...+...+.-+.+. |+.+....++-.+..
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies-~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES-GDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc-CCchhHHHHHHHHHH
Confidence 7667889999998888754222211 1223344455555666 777777777766664
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.17 E-value=0.029 Score=58.70 Aligned_cols=133 Identities=5% Similarity=-0.013 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 004813 474 VLDSISYSKLVEGLCQ--V---EKITEAVEVFCCMSKNGCSLS-SSSFNILIYGLCVMR--------KVDKAIRLRSLAY 539 (729)
Q Consensus 474 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~ 539 (729)
..+...|...+.+... . ++...|..+|+++.+. .|+ ...|..+..++.... +...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3455666666655432 1 2355677777777664 343 233333333222111 1122222222222
Q ss_pred Hc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 540 SS-GTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 540 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.. ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 112233444444444444555555555555555543 3455555555555555555555555555554
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.011 Score=52.16 Aligned_cols=94 Identities=7% Similarity=-0.040 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP--DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
..|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|+..+++.... .+.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHH
Confidence 344555555566666777777666666542121 1235666666666777777777777766665 2334445555555
Q ss_pred HHH-------hcCChhHHHHHHHH
Q 004813 661 GLW-------KEGLTSQASYLLDL 677 (729)
Q Consensus 661 ~~~-------~~g~~~~A~~~~~~ 677 (729)
.+. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 77777755544443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0023 Score=46.11 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=34.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.+.|++++|...|+.+.... |.+..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777777777766665 556666667777777777777777777766553
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.17 Score=49.07 Aligned_cols=89 Identities=8% Similarity=-0.046 Sum_probs=50.7
Q ss_pred HHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 004813 487 LCQVEKITEAVEVFCCMSKNG---CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRA 563 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 563 (729)
..+.|++..|.+.+.+.+... ..++...|.....+..+.|+.++|+.--++..+.+ ..-...|..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776532 23334445555555667777777777766665422 00011222222344455677
Q ss_pred hHHHHHHHHHHHc
Q 004813 564 KDLLVVLAQMLVE 576 (729)
Q Consensus 564 ~~A~~~~~~~~~~ 576 (729)
++|.+-|++..+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776665
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.0016 Score=47.18 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG-LTSQASYLLDLMLG 680 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 680 (729)
+...|..+...+...|++++|+..|++..+. .+.+...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666677777777777777777766 3445666777777777777 57777777776654
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.32 Score=47.39 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+.+..|.-+...|+...|.++-.+..- |+..-|...+.+++..++|++-.++... +-.+..|-..+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 344445566677777777777665542 7777777888888888888776665332 123356666666666
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCIL 396 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 396 (729)
+.|+..+|..++.... +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666655511 155556666666666665543
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.036 Score=51.62 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL---QRAKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
+-|...|..|...|...|+.+.|...|....+.. .+++..+..+..++... ....++..+|++++..++. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4577788888888888888888888888777654 45566666666665433 2456777888888877544 66666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 67777788888888888888888875
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.04 E-value=0.087 Score=47.94 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKER--YPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.+-.....+...|++.+|...|+.+...- .+....+...++.++.+.|+++.|...++++.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556667777777777777776652 1234456666777777777777777777776543
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.02 Score=51.46 Aligned_cols=138 Identities=9% Similarity=-0.048 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+-++++..+.-.|.+.-....++++.+...+.+......|.+.-.+.|+.+.|...|++..+..-..|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~--- 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL--- 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH---
Confidence 34556666666777777777777777766555666677777777788888888888887765444444444433222
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
......|.-.+++..|...+.++...+..++..-|.-.-+..-.|+...|++.++.|
T Consensus 256 -----------------------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 256 -----------------------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred -----------------------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 223334556677788888888888877767777777666677778888899988888
Q ss_pred HHCC
Q 004813 434 VVSS 437 (729)
Q Consensus 434 ~~~~ 437 (729)
....
T Consensus 313 ~~~~ 316 (366)
T KOG2796|consen 313 VQQD 316 (366)
T ss_pred hccC
Confidence 8763
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.057 Score=55.08 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=30.8
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK 505 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 505 (729)
.+...+..-+.+...+..|.++|..|-+. ..+++.....+++++|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33444334444555566666666665432 2455666667777777776666554
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.03 E-value=0.0085 Score=56.43 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----ETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNI 657 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 657 (729)
.|...+..+.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+. +.+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445567777777777777764 3332 35566777777788888888888887765 11223445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 658 LINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
++..+...|++++|.++|+++.+. .|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 677777788888888888887764 45543
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.0093 Score=57.10 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=84.7
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSA----QSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCMSK----NGC-SLSS 512 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~ 512 (729)
..|..+.+.|.-.|+++.|+...+.-.. .|-+ .....+..+.+++.-.|+++.|.+.++.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666667777888888877655332 2211 1234567788888888888888888876533 221 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSS----G-TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
..+-+|...|.-..++++|+.++.+-... + ..-....+-+|..+|...|..++|+...+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667777777777888888876653321 1 112234566788888888888888877665544
No 207
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.94 E-value=0.0035 Score=44.66 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=19.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
...|++++|++.|+++++..+. +...+..+..++...|++++|...|++++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444333221 33333333344444444444444444433
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.13 Score=46.83 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHH
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDS---SMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A 671 (729)
+...|.+.|.+..|..-++.+++. .+.+. ..+..++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 444566666666666666666665 22222 2344556666666665533
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.89 E-value=0.0055 Score=44.89 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=48.9
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
..|.+.+++++|.++++++... .|.++..|...+.++.+.|++++|.+.+++..+. .|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHH
Confidence 4567788888888888888887 4667778888888888888888888888888874 46554443
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.88 E-value=0.0046 Score=44.68 Aligned_cols=21 Identities=0% Similarity=-0.051 Sum_probs=7.9
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~ 575 (729)
..+...|++++|+..|++.++
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.87 E-value=0.18 Score=49.46 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.+.+++.+..-.|+.++|.+.+++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4557888888899999999999999875
No 212
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.055 Score=43.71 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNV--REALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
...+-..|+.++|..+|++..+.|.... ...+..+..++...|++++|..+|++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455556666666665555543332 23444555555556666666666655543
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.74 E-value=0.62 Score=47.96 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHhcCCHHHHHHHHH------HHHhCCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 279 IPMLCRENKLEEAIRLFK------MMRALDLM---PDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~------~m~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 349 (729)
..++...|+.++|..+.- .+.+-+-+ .+..+...+..-+.+...+.-|-++|.+|-. ..+++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 344555666666665531 11111111 2333444444445556667777778777742 23566
Q ss_pred HHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHH
Q 004813 350 RGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYEL 429 (729)
Q Consensus 350 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 429 (729)
......+++++|..+-+..+..-+.+|-.....++...++++|.+.| .+.|+..+|..+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf---------------------hkAGr~~EA~~v 839 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF---------------------HKAGRQREAVQV 839 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH---------------------HHhcchHHHHHH
Confidence 67777888888888888877777777777777777777777776554 445777888888
Q ss_pred HHHHHHC
Q 004813 430 LGRMVVS 436 (729)
Q Consensus 430 ~~~~~~~ 436 (729)
++++...
T Consensus 840 LeQLtnn 846 (1081)
T KOG1538|consen 840 LEQLTNN 846 (1081)
T ss_pred HHHhhhh
Confidence 8887654
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.58 E-value=0.88 Score=44.85 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=74.3
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQS-LVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSF-NILIY 520 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 520 (729)
..|+..++.-.+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 445555665556666677777777776666 4566666677766554 45666666776654443 2333333 34445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYT--TSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
-+...++-+.|..+|+.....- ..+ ...|..++.--..-|+...+..+-+.+.+.
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5556666667777766443321 111 345666666556666666666555555543
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.54 E-value=0.063 Score=50.65 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=47.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCh
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAG--LVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 633 (729)
.+.|++++|...|+.+++..+... ...+-.+..+|...|++++|...|+.+++.- -......+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 445666666666666665522211 2344455566666666666666666666531 011123344445555566666
Q ss_pred HHHHHHHHHHHhC
Q 004813 634 HLVSSGINKLVSD 646 (729)
Q Consensus 634 ~~A~~~~~~~~~~ 646 (729)
++|.++++++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.006 Score=45.41 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhC----CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSD----SE-VLD-SSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+++.+...|...|++++|+..+++..+. |. .++ ..+++.++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555666666666655555432 11 111 3456677777777777777777777654
No 217
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.37 E-value=0.12 Score=49.09 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=58.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH----
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVE-----GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPDRET---- 619 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~---- 619 (729)
+..++...+.++++++.|+...+. +.......+..|...|.+..++++|.-+..+..+. ++.--...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555555555666655555442 11122334555555566666666655554444332 21111111
Q ss_pred -HHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 620 -MLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 620 -~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
...+.-++...|++-.|.+.-++..+. |-. ........+.+.|...|+.+.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122333455555555555555544332 211 1222344556666666666666555554
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=1.9 Score=45.55 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=83.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
...+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-.++-+.... +.-|.-+..
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33455556667778888888888877664 56888888888899999999987776665542 334556788
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
+|.+.|+.++|.+++-+.... .-...+|.+.|++.+|.++-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 899999999999988766543 15777888889988887654
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.041 Score=47.07 Aligned_cols=54 Identities=28% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
+..+...|++++|..+++.+.... |.+...+..++.+|...|+...|.++|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444455555555555544444 444445555555555555555555544444
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=2.1 Score=45.89 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH----HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 132 EALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV----LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY 207 (729)
Q Consensus 132 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 207 (729)
.....-+..+.+...++-|..+-+.- ..+......+ ..-+.+. |++++|...|-+-... +.| ..
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHccc-CCh-----HH
Confidence 34455566677777777777665543 2222332333 3334455 8999888887766543 222 24
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcC
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ-LELSFYTCIIPMLCREN 286 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 286 (729)
+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|.. .| ....+..+-+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhC
Confidence 566677777777888888888888765 55666788889999999888777766554 2221 12 233455555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66666555443332 22222322 34557788888887766
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.26 E-value=0.17 Score=42.85 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=49.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 593 SEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...|++++|..+|.-+.-.+.. +...|..|..+|-..+++++|+..+......+ ..|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 4556666666666655553322 34445555555556666666666666555542 344445555666666666666666
Q ss_pred HHHHHHHh
Q 004813 673 YLLDLMLG 680 (729)
Q Consensus 673 ~~~~~~~~ 680 (729)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666654
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.23 E-value=0.027 Score=41.12 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=35.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.++.+.++++.|...++.+...+ |.+...+.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666666666666664 445666666666666666666666666666553
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.041 Score=47.07 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=35.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRET 619 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 619 (729)
.++..+...|++++|..+.+.+....+. +...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666666666666665433 556666666666666666666666665543 255665544
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.97 E-value=1.9 Score=42.65 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+-..+.+++.++.-.|++++|.+..++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334444555555555566666655555554
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.12 Score=42.29 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHh
Q 004813 612 GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDSSMYNILINGLWK 664 (729)
Q Consensus 612 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 664 (729)
.+.|+..+..+++.+|+..|++..|.++++...+. +++.+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566777777777777777777777777776665 555566666666644443
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.11 Score=42.47 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=34.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 004813 267 GIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRAL-DLMPDELTYEELINCLC 318 (729)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 318 (729)
...|+..+..+++.+|+..|++..|+++.+...+. +++-+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577777777777777777777777777766543 45555666766666443
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.90 E-value=1.8 Score=41.74 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVD---KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 589 (729)
.+...++.+|...+..+ +|..+++.+.... ...+..+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 45667777887766654 4555556664432 223445545566666788888899999988876221 334444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHH-H-HH---HHHHhccCC------hHHHHHHHHHHHhC-CCCCCHHh
Q 004813 590 QSM---SEQNKLKDCALFFNVMVKAGLVPDRETM-L-SL---LHGLADGSQ------LHLVSSGINKLVSD-SEVLDSSM 654 (729)
Q Consensus 590 ~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~-~l---~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~ 654 (729)
..+ .. .....|...++.++...+.|....+ . .+ +......++ ++...+++..+.+. +.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 3345677777777766555555311 1 11 111222222 34444444433332 23334333
Q ss_pred HHH-------HHHHHHhcCChhHHHHHHHHHH
Q 004813 655 YNI-------LINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 655 ~~~-------l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
-.+ -+..+.+.+++++|.++|+-.+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 2445668899999999998554
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.85 E-value=0.12 Score=51.37 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=41.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV--EAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
+...++.+..+|.+.|++++|+..|++.++..+.... .+|..+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456666667777777777777777776665332111 34666666777777777777777776663
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.02 Score=42.57 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA--GLV---PD-RETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
+|+.+...|...|++++|+..|++.++. ... |+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554432 011 11 2344555555555566666555555544
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.83 E-value=0.54 Score=49.02 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCChHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCIL-IQSMSEQNKLKDCALFFNVMVKAG---LVPDRETMLSLLHGLADGSQLHLVS 637 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 637 (729)
..+.|.++++.+.+. -|+...|... .+.+...|+.++|++.|++..... .+.....+--+...+.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344555555555544 3444443322 233444555555555555443210 0111223333444455555555555
Q ss_pred HHHHHHHhC
Q 004813 638 SGINKLVSD 646 (729)
Q Consensus 638 ~~~~~~~~~ 646 (729)
+.|.++.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555554
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.82 E-value=0.11 Score=43.94 Aligned_cols=88 Identities=5% Similarity=-0.075 Sum_probs=55.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 45667777777777776665443 455556666666667777777777776655432 1333344556667777777777
Q ss_pred HHHHHHHHhC
Q 004813 637 SSGINKLVSD 646 (729)
Q Consensus 637 ~~~~~~~~~~ 646 (729)
+..|+..++.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7777777663
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.81 E-value=2 Score=41.70 Aligned_cols=221 Identities=12% Similarity=0.022 Sum_probs=113.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHh--HHHHHHHHh---hcCC
Q 004813 384 CNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS-VVPDCAT--YSAFVLGKC---KLCN 457 (729)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~--~~~ll~~~~---~~~~ 457 (729)
.+.|..+.|.++-++....-+.-...+...+...|..|+++.|+++++.-+... +.++..- -..|+.+-. -..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 456777777777766666555455566677777777777777777777654432 2333221 112222111 1123
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSIS-YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
...|...-.+..+. .||..- -..-...+.+.|++.++-.+++.+-+. .|.+.++...+ +.+.|+. ++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCCc--HHHHHH
Confidence 44455444444433 233222 222345666777777777777777665 34444443222 3334432 222222
Q ss_pred HH---HHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 004813 537 LA---YSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-EQNKLKDCALFFNVMVKAG 612 (729)
Q Consensus 537 ~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~ 612 (729)
+. .... +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++.+.+.+.++.-
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22 1211 233444445555556666666665555544433 555666655555543 3366666766666666543
Q ss_pred CCC
Q 004813 613 LVP 615 (729)
Q Consensus 613 ~~p 615 (729)
-.|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 333
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.72 E-value=1.6 Score=40.01 Aligned_cols=53 Identities=15% Similarity=0.042 Sum_probs=29.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCC---CcccchHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 384 CNAGKFFLAKCILEKMADRKIA---DCDSWNIPIRWLCENEEIRKAYELLGRMVVS 436 (729)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 436 (729)
.+.|++++|.+.|+.+..+.+. ...+.-.++.++.+.++++.|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3556666666666666655444 2233344445555566666666666665554
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.099 Score=52.05 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
+...|+.+..+|...|++++|+..|++.++ +.|+. ..|..+..+|...|+.++|+..++++.+.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 577899999999999999999999999998 46664 358999999999999999999999999862 11 222
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHhCCC
Q 004813 657 ILIN--GLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 657 ~l~~--~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
.+.. .+....+..+..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122334466777777777664
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=1.7 Score=40.78 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=87.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCC
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRG 182 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (729)
...+...|++.+|..+|....... +.+......++.+|...|+++.|..++..+...--.........-|..+.+. ..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-a~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-AA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-hc
Confidence 345667788888888888877765 4456777778888888888888888888774332122222223334445444 44
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCC
Q 004813 183 FADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK-GCCPNSRTFEIVIKGLIANSR 252 (729)
Q Consensus 183 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~ 252 (729)
..+...+-.++-.. +-|...-..+...+...|+.+.|++.+-.+.+. .-.-|...-..++..+.-.|.
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 45444544444442 235556666777777778888877766655543 112244455555655555553
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=1.2 Score=37.58 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004813 171 VVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIAN 250 (729)
Q Consensus 171 ~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 250 (729)
.++..+... +........++.+...+ ..+...++.++..|++.+ .....+.++. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~-~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKR-NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhC-CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 445555555 66666667777666655 245666677777776543 2333343332 12334444566666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004813 251 SRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE-NKLEEAIRLFKMMRALDLMPDELTYEELINCLC 318 (729)
Q Consensus 251 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 318 (729)
+-++++.-++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666665532 23333344434 6666666666542 24445665555544
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.24 Score=45.71 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChh
Q 004813 594 EQNKLKDCALFFNVMVKAGL--VPDRETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILINGLWKEGLTS 669 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 669 (729)
+.|++..|.+.|...++... .-....+..|..++...|++++|..+|..+.+. ..+.-+..+--|+....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555555310 001123334555555555555555555555554 11122344555555555666666
Q ss_pred HHHHHHHHHHhC
Q 004813 670 QASYLLDLMLGK 681 (729)
Q Consensus 670 ~A~~~~~~~~~~ 681 (729)
+|..+|+++.++
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 666666665553
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=2 Score=38.88 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHH
Q 004813 95 TADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLG 174 (729)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 174 (729)
-...|.....+|..++++++|...+.+..+-. ..+...| .... .++.|.-+.+++.+. +--...|+.-..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hAAK------ayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HAAK------AYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HHHH------HHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 34556666677777888888887776665321 1122122 1122 223333344444321 122233444555
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCChhhHHHHHHHHHh
Q 004813 175 AIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHK---KG--CCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~--~~p~~~~~~~li~~~~~ 249 (729)
.|..+ |.++.|-..+++.-+. ...-++++|+++|++... .+ .+--..-+...-+.+.+
T Consensus 100 lY~E~-GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVEC-GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHh-CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 66666 6666666655554321 122233344444433211 11 00111223334445555
Q ss_pred cCChhHHHHHHHHHHH----CCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcC
Q 004813 250 NSRVDDSVSILGEMFD----LGIQLEL-SFYTCIIPMLCRENKLEEAIRLFKMMRALD---LMPDELTYEELINCLCENL 321 (729)
Q Consensus 250 ~g~~~~a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~ 321 (729)
...+++|-..+..-.. ..--++. ..|...|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 5555555444433221 1111222 335555666666778888888887754432 123455666677666 456
Q ss_pred ChhHHHHHH
Q 004813 322 RLDDANDIL 330 (729)
Q Consensus 322 ~~~~a~~~~ 330 (729)
+.+++..++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 666655543
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.36 E-value=0.29 Score=39.04 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=51.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCH--HhHHHHHHHHHhcCC
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDS--SMYNILINGLWKEGL 667 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~ 667 (729)
+++..|+++.|++.|.+.+.. .+-....||.-..++.-+|+.++|++=+++..+. |..... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666666653 2224556666666666666666666666666665 211111 123344455566666
Q ss_pred hhHHHHHHHHHHhCC
Q 004813 668 TSQASYLLDLMLGKG 682 (729)
Q Consensus 668 ~~~A~~~~~~~~~~g 682 (729)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665554
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.36 E-value=2.4 Score=39.57 Aligned_cols=223 Identities=15% Similarity=0.016 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 456 CNYEDALRVFRQVSAQSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCMSKN-GCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
+....+...+......... .....+......+...+++..+...+...... ........+..+...+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444555444443221 12455566666667777777777777766542 123445555666666666777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 534 LRSLAYSSGTSYTTSTYTKIML-GLVKLQRAKDLLVVLAQMLVEGC--ALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777776644222 112222222 56777888888888887755321 11333344444446667788888888888776
Q ss_pred CCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 611 AGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 611 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.. .. ....+..+...+...++++.|...+...... .+.....+..+...+...|.++++...+++....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh-CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42 22 3566677777777778888888888888776 2223455556666666667788888888877764
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.27 E-value=1.1 Score=36.06 Aligned_cols=65 Identities=23% Similarity=0.170 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
..+...+..+..+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..+|-+++.+.-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555566666666666666666543 355666666666677777777777666666666664
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.01 E-value=1.7 Score=36.76 Aligned_cols=132 Identities=8% Similarity=0.067 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 58 RHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISL 137 (729)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 137 (729)
.+.+.++.++..+...+.+.....+++++.... +.++...+.++..+++... ......+.. . .+......+
T Consensus 5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~ 75 (140)
T smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKV 75 (140)
T ss_pred CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHH
Confidence 456677888888888888889999998887664 3567788888888877533 333333331 1 112234446
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004813 138 VFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLF 213 (729)
Q Consensus 138 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 213 (729)
++.|.+.+.++++.-++.++.. +...+..+....++++.|.+.+.+- .+...|..++..+.
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6667777777777777666521 1122222222214566666655431 14455665555544
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=1.9 Score=39.00 Aligned_cols=205 Identities=13% Similarity=0.032 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 445 YSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524 (729)
Q Consensus 445 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (729)
|.....+|-..+++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. +--...|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445555566666666655554421 111111111 122344444455555442 1122334455555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHHhcCCHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE---GCA--LDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~~~~~ 599 (729)
+|.++.|--.+++.-+ .....++++|+++|++.... +-. --...+...-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 6666655554444432 12344566666666665432 100 11223444455667777777
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 600 DCALFFNVMVKA----GLVPDR-ETMLSLLHGLADGSQLHLVSSGINKLVSD---SEVLDSSMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 600 ~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 671 (729)
+|-..+.+-... .-.++. ..|...|-.+....++..|.+.++.-.+. .-+.+..+...|+.+| ..||.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 766665543321 111221 23445555566667788888888775444 1223445666666665 34776666
Q ss_pred HHHHH
Q 004813 672 SYLLD 676 (729)
Q Consensus 672 ~~~~~ 676 (729)
..++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 55544
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=0.37 Score=44.52 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccc-HHhHHHHH
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG-GFKLS-VDVFNVVL 173 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~~~~~~ll 173 (729)
.|+..+. +.+.|++..|...|...++... .-...++..|..++...|+++.|..+|..+.+. +-.|. +..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544443 3455666666666666665531 223455666666666666666666666666432 11122 23344444
Q ss_pred HHHHhcCCChhHHHHHHHHHHHC
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
....+. |+.+.|...|+++.+.
T Consensus 223 ~~~~~l-~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRL-GNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHH
Confidence 445555 6666666666666654
No 245
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.95 E-value=5.4 Score=41.38 Aligned_cols=187 Identities=10% Similarity=-0.072 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+..+|...+..-.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+--.+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3445666666666677777777776666531 111223333333333344666666666555544332222221111111
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCH--HHHHHHHH-HHh
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAY-CILIQSMSEQNKLKDCA---LFFNVMVKAGLVPDR--ETMLSLLH-GLA 628 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~p~~--~~~~~l~~-~~~ 628 (729)
-.-..|++..|..+++.+.+.- |+..-. ..-+....+.|+.+.+. +++.........+.. ..+....+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 2234567777777777776652 333221 12233445566666665 333333221111111 11111111 122
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 666 (729)
-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 356677777777777776 5666666777776666554
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.57 Score=45.76 Aligned_cols=93 Identities=13% Similarity=-0.011 Sum_probs=60.2
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCC----CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQK----RFQHT---------ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREA 133 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 133 (729)
...+-+.|++..|..-|+.+..-- .+++. ..++..+.-.+.+.+++..|+...+..+..+ +++..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 445667889999999888865421 11111 2344555566666777777777777776666 566666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
+..-..+|...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 666667777777777777777777663
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.55 Score=45.86 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
++.+...|.+.+++..|++.-.+.+..+.. |....---..+|...|+++.|+..|+++.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444455555555555555555544322 444444444555555555555555555554
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.87 E-value=1.8 Score=45.27 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=14.0
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCC
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKR 91 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~ 91 (729)
++.++.-.|+-+.+++.+....+..+
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~ 219 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSEN 219 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCC
Confidence 34444455666666666666554433
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.86 E-value=0.59 Score=47.96 Aligned_cols=56 Identities=7% Similarity=0.164 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 236 NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
+...|..|.....+.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544433 34444444445555444444444443
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.85 E-value=8 Score=43.65 Aligned_cols=360 Identities=13% Similarity=0.120 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH-hCCC--cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 004813 135 ISLVFSFVNHYRVNGAMRVLVNMN-SGGF--KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVD--TLNYLL 209 (729)
Q Consensus 135 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li 209 (729)
...++-++..+++.+|.++..+-+ ..++ .-++..|..-+.++.+..++.+-....+..+.+..+.-+.. ++.+-.
T Consensus 681 La~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k 760 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGK 760 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccc
Confidence 344455566667777766655441 1111 22344444445555555455555555555555432221111 111111
Q ss_pred HHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004813 210 EVLFET----NRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS--RVDDSVSILGEMFDLGIQLELSFYTCIIPMLC 283 (729)
Q Consensus 210 ~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (729)
..|... +..+...+..+....+ ..|+ .-...+|.++.+.+ .++.++........... ...+=.++ ...+
T Consensus 761 ~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~al-~hll 835 (1265)
T KOG1920|consen 761 QVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEAL-KHLL 835 (1265)
T ss_pred eeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHHH-HHHH
Confidence 122221 2233333444333332 2445 33445677777766 56666666665554111 11111111 1111
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHH
Q 004813 284 RENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVN 363 (729)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 363 (729)
- +-.+-.+|+..+.. -|. =-+++-+-..+.|+.+=+-+++++.+. +++..-| ..=...++++.|+.
T Consensus 836 ~---Lvdvn~lfn~ALgt---YDl--~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF----~ID~~L~ry~~AL~ 901 (1265)
T KOG1920|consen 836 F---LVDVNELFNSALGT---YDL--DLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF----KIDDYLKRYEDALS 901 (1265)
T ss_pred h---hccHHHHHHhhhcc---cch--HHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe----eHHHHHHHHHHHHH
Confidence 0 11112222222110 000 001222233344455555555544421 1111111 00111334444444
Q ss_pred HHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 364 FLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCA 443 (729)
Q Consensus 364 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 443 (729)
-+.... ...+...++.--+.|.+.+|..++..-.+. -...|.+....+.....+++|.-.|+..-+
T Consensus 902 hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------- 967 (1265)
T KOG1920|consen 902 HLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERCGK-------- 967 (1265)
T ss_pred HHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHhcc--------
Confidence 444333 223344555555566666666555432222 233455555555556666666555554311
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC 523 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (729)
....+.+|-..|++.+|..+..++....-. -..+-..|+.-+...++.-+|-++..+.... | ...+..|+
T Consensus 968 -lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ 1037 (1265)
T KOG1920|consen 968 -LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLC 1037 (1265)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHh
Confidence 112245566666677766666655432100 1111244555556666666666666665542 1 12233344
Q ss_pred hcCCHHHHHHHHHH
Q 004813 524 VMRKVDKAIRLRSL 537 (729)
Q Consensus 524 ~~~~~~~A~~~~~~ 537 (729)
+...+++|.++...
T Consensus 1038 ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1038 KAKEWEEALRVASK 1051 (1265)
T ss_pred hHhHHHHHHHHHHh
Confidence 55556666555433
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.83 E-value=2.4 Score=42.85 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLV-PDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
+..++.+.|+.++|.+.+.+|.+.... -+..+...|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344444555555666555555543111 1223444555555555566666555555543
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=2.8 Score=39.82 Aligned_cols=153 Identities=8% Similarity=-0.063 Sum_probs=93.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHH
Q 004813 419 ENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYS----KLVEGLCQVEKIT 494 (729)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 494 (729)
..|+..+|-..++++++.- +.|...+...=.+|.-.|+.+.-...++.+... ..+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4677777777788877653 446677777777788888888777777777654 223333332 2333445678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 495 EAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS---YTTSTYTKIMLGLVKLQRAKDLLVVLA 571 (729)
Q Consensus 495 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 571 (729)
+|++.-++..+.+ +.|.-...+..+.+...|++.++.++..+-...=-. .-...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888777754 445566667777777778888887775543321000 001112222223445577888888877
Q ss_pred HHH
Q 004813 572 QML 574 (729)
Q Consensus 572 ~~~ 574 (729)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.68 E-value=1.1 Score=37.20 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=26.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCA--LDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.+.|++++|.+.|+.+...-+. -....--.++.+|.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455555555555555554111 12233334555555555555555555555553
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.67 E-value=1.9 Score=34.81 Aligned_cols=66 Identities=9% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
.......++.+...|+-++-.+++.++.+ +-.+++.....+..+|.+.|+..++.++++++.+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556667777777777777777665 2356666777777777777777777777777777764
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.67 E-value=0.21 Score=45.75 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH
Q 004813 579 ALDVEAYCILIQSMSEQ-----NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSS 653 (729)
Q Consensus 579 ~p~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 653 (729)
+-|-.+|...+..+... +..+-.-..+..|.+-|+.-|..+|+.|+..+=+..-.. ..+|++.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~---------- 131 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKV---------- 131 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHH----------
Confidence 34666666666665432 334444445566666677777777777776654332110 0111111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 705 (729)
.--|- ..-+-++.++++|...|+.||..+-..|++++.+.+.+-.
T Consensus 132 -----F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~ 176 (406)
T KOG3941|consen 132 -----FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTK 176 (406)
T ss_pred -----HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHH
Confidence 11111 1234578889999999999999999999999988776543
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=2.4 Score=36.09 Aligned_cols=139 Identities=10% Similarity=0.083 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 95 TADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPN-VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
+-..|...+. +++.+..++|+..|..+.+.|... ..-............|+...|...|.++-.....|-..-=..-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444544443 466777888888888887776432 22334445556677788888888888885544334332111111
Q ss_pred ---HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004813 174 ---GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP 235 (729)
Q Consensus 174 ---~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 235 (729)
-.+... |.++.+....+.+...+.+.-...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 137 raa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 133455 8888888888888776655556666777777788888989988888877643333
No 257
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.59 E-value=6 Score=43.05 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc-
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQS-LVLDSISYSKLVEGLCQ- 489 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 489 (729)
.....+.-.|+++.|++.+-+ ..+...|.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 445666778889999888876 2233556666666665443322222211 2222111 01122456777777775
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 004813 490 --VEKITEAVEVFCCMSKN 506 (729)
Q Consensus 490 --~g~~~~A~~~~~~~~~~ 506 (729)
..+..+|.+++--+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 45788888888777654
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.54 E-value=0.26 Score=45.17 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004813 220 SALDQFRRMHKKGCCPNSRTFEIVIKGLIANS 251 (729)
Q Consensus 220 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 251 (729)
=+++++++|...|+.||-.+-..|++++.+.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 34555555555555555555555555554444
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.49 E-value=4.9 Score=38.75 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNY---EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
++..++.++...+.. ++|..+++.+...... .+..+..-+..+.+.++.+++.+.+.+|... +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 445556666665553 4455555555443222 3444445566666677788888888888764 1223344444444
Q ss_pred HHHh--cCCHHHHHHHHHHHHHcCCCCC
Q 004813 521 GLCV--MRKVDKAIRLRSLAYSSGTSYT 546 (729)
Q Consensus 521 ~~~~--~~~~~~A~~~~~~~~~~~~~~~ 546 (729)
.+.. ......|...++.+....+.|.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4421 1223445555555544433333
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.48 E-value=4.1 Score=37.90 Aligned_cols=202 Identities=17% Similarity=0.092 Sum_probs=123.6
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
...+......+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555555666666666666666665542 122344555555666666667777777777776643222 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 521 -GLCVMRKVDKAIRLRSLAYSSGT--SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 521 -~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.+............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56777888888888777754221 122333333444456677888888888887775222135667777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 598 LKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888874 333 344445555555666788888888888776
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=2.8 Score=35.69 Aligned_cols=141 Identities=9% Similarity=0.114 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH-HHHHhcCCChhHHHHHHHHHHHCCCCCCHH-HH
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL-GAIVEEKRGFADFVFVYKEMVKAGIVPNVD-TL 205 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~ 205 (729)
..+...|...++. .+.++.++|+.-|..+.+.|..--+..-..-. ....+. |+-..|...|+++-.....|-.. -.
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhccCCCcchhhHH
Confidence 3445566666653 57788888999999988776554333322222 233444 88899999999988765555443 22
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004813 206 NYLL--EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQL 270 (729)
Q Consensus 206 ~~li--~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 270 (729)
..|= -.++..|.+++.....+.+-..+.+--...-..|.-+-.+.|++..|.+.|.++.+....|
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2222 2345678888888888777665543334444556666778899999999999888643333
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.40 E-value=0.92 Score=46.55 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=55.1
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
.+...-.++++.+.+..+.-.--+.. .....+.++..+-+.|.++.|+.+..+-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34444555666665555421111111 13345555555555666666555533211 11223334555
Q ss_pred hhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 147 VNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFR 226 (729)
Q Consensus 147 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 226 (729)
++.|.++.++. .+...|..|-....+. |+++.|++.|++..+ |..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~-g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQ-GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHT-TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHc-CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 55555443322 2344555555555555 555555555544432 3344444445555544444444
Q ss_pred HHHh
Q 004813 227 RMHK 230 (729)
Q Consensus 227 ~m~~ 230 (729)
....
T Consensus 398 ~a~~ 401 (443)
T PF04053_consen 398 IAEE 401 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.38 E-value=7.4 Score=40.43 Aligned_cols=117 Identities=9% Similarity=0.087 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHH
Q 004813 113 EEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKE 192 (729)
Q Consensus 113 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 192 (729)
+.+..+++.++.. .|.--.-|......=.+.|..+.+.++|++-... ++.+...|...+..+....|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3344445544433 1333334444444445666667777777766542 4566666666666655555666666666666
Q ss_pred HHHC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 193 MVKA-GIV-PNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 193 ~~~~-g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
..+. |.. .....|...|..-..++++.....++++.++.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6543 211 12334555565556667777777777776653
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.34 E-value=4.2 Score=37.44 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 106 LGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.++++.|+..+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455666666666666654421 223455555556666666666666666666443
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.31 E-value=7.7 Score=43.79 Aligned_cols=80 Identities=9% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE--TMLSLLHGLADGSQ 632 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 632 (729)
+-+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++... -|.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455566665555543211 12245566666666666666555421 1111 11345555666666
Q ss_pred hHHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSD 646 (729)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (729)
.-+|-++..+....
T Consensus 1015 h~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD 1028 (1265)
T ss_pred chhHHHHHHHHhcC
Confidence 66666666665543
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=94.28 E-value=3.1 Score=42.01 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
.+|.++-++..+.+.. |......+..+....++++.|...|++... +.|| ...|......+...|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444433 455544555545555555555555555554 3344 23333334444445555555555555
Q ss_pred HHhC
Q 004813 643 LVSD 646 (729)
Q Consensus 643 ~~~~ 646 (729)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5443
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=1.2 Score=42.05 Aligned_cols=188 Identities=11% Similarity=-0.060 Sum_probs=117.9
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCh
Q 004813 488 CQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTY----TKIMLGLVKLQRA 563 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 563 (729)
.-.|+..+|...++++.+. .+.|...+..--.+|...|+.+.-...++++...= .++...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888888888875 46677888888888998999888888888887541 2343322 3333445678889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA---GLVPDRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
++|++.-++..+.+.. |...-......+...|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999988888776533 6666666777777888899988887665432 11111223334444456678888898888
Q ss_pred HHHH-hCCCCCCHHh---HHHHHHHHHhcCChhHHHHHHHHH
Q 004813 641 NKLV-SDSEVLDSSM---YNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 641 ~~~~-~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
++=+ ..-.+.|.+. |..+.....+...+.+-..+-+.+
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 7543 3323334432 222333334444444444433333
No 268
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.16 E-value=7.3 Score=39.47 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 004813 544 SYTTSTY-TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS--EQNKLKDCALFFNVMVKA-GLVPDRET 619 (729)
Q Consensus 544 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~-~~~p~~~~ 619 (729)
.++..++ +.+++-+...|-+++|...+..+... +.|+...|..++..-. ..-+...+.++|+.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444433 45566666777777777777777665 4556666666665422 122366777777777765 5 56667
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
|...+.-=...|..+.+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 766666666777777777776666554
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.09 E-value=1.8 Score=35.95 Aligned_cols=84 Identities=8% Similarity=-0.016 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
+..+..-.....+.|++++|.+.|+.+...-. +-...+...++.+|.+.+++++|...+++.++.........|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33444445566677888888888888876621 2355677778888888888888888888887765433334466666
Q ss_pred HHHHhc
Q 004813 174 GAIVEE 179 (729)
Q Consensus 174 ~~~~~~ 179 (729)
.+++..
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 665543
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.06 E-value=3 Score=40.06 Aligned_cols=125 Identities=11% Similarity=0.012 Sum_probs=52.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHH-
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSY-----TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCALDV-EAYC- 586 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~-~~~~- 586 (729)
+..++...+.++++++.|+...+..... ...++..|...|....++++|.-+..+..+. ++. |. .-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 3444444445555555555543321111 1223445555555555555555444433321 211 11 1111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHH
Q 004813 587 ----ILIQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETMLSLLHGLADGSQLHLVSSGINKL 643 (729)
Q Consensus 587 ----~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (729)
.+.-++...|++..|.+.-++..+. |-.+. ......+.+.|...|+.+.|+.-++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1222344455555555554443332 21111 123334455555566665555555443
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.98 E-value=2 Score=43.42 Aligned_cols=162 Identities=11% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFF 605 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 605 (729)
.+...-++.-+++.+. .|+....-.++ +-.......+|++++++..+.|-. .+ .+....+..-..+
T Consensus 182 Rnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 182 RNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SL-------GKSQFLQHHGHFW 247 (539)
T ss_pred CCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hh-------chhhhhhcccchh
Confidence 3444444444444443 45543322222 222344578888888887765321 11 1100001111122
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 606 NVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
+........|-..+-..+..++.+.|+.++|++.++++.+.... .+..+...|+.+|...+.+.++..++.+--+.. -
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-l 326 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-L 326 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-C
Confidence 22222223333444456777888999999999999999876211 234477889999999999999999998864322 3
Q ss_pred CCH--HHHHHHHhhhhhcch
Q 004813 685 PDA--TTHGLLVGSSVGEEI 702 (729)
Q Consensus 685 p~~--~~~~~ll~~~~~~~~ 702 (729)
|.. ..|...+-..++.++
T Consensus 327 pkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVGD 346 (539)
T ss_pred CchHHHHHHHHHHHHHhhcc
Confidence 443 345555544444433
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.95 E-value=0.13 Score=32.84 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
|..+...|...|++++|.++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=93.90 E-value=3 Score=42.08 Aligned_cols=110 Identities=10% Similarity=-0.023 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
.+..+|.++.++.++.+-. |......+..+....++.+.|...|++.... .|.....|......+.-+|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH-STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456788888888886433 6777777777778888899999999999997 3556678889999999999999999999
Q ss_pred HHHHhCCCCCCH---HHHHHHHhhhhhcchhhhhhhc
Q 004813 676 DLMLGKGWVPDA---TTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 676 ~~~~~~g~~p~~---~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
++..+. .|-- .....-+..|+..+-.+....+
T Consensus 396 ~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 396 DKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 997763 4533 4455556677788877777655
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.87 E-value=0.75 Score=36.85 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=58.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHhccC
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA-GLVPDRE---TMLSLLHGLADGS 631 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g 631 (729)
+++..|+.+.|++.|.+.+..-++ +...||.-..++.-+|+.++|++=+++.++. |-+ ... .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 455667777777777777765333 5667777777777777777777777777765 222 222 2223333466677
Q ss_pred ChHHHHHHHHHHHhCC
Q 004813 632 QLHLVSSGINKLVSDS 647 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~ 647 (729)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777877777776665
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.66 E-value=0.71 Score=43.42 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATTHGLL 693 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 693 (729)
++..++..+...|+.+.+.+.++++.+. .+-+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677777788888888888888887 567778888888888888888888888877664 5788888777776
Q ss_pred Hhhh
Q 004813 694 VGSS 697 (729)
Q Consensus 694 l~~~ 697 (729)
....
T Consensus 234 ~~~~ 237 (280)
T COG3629 234 EEIL 237 (280)
T ss_pred HHHh
Confidence 6663
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=6.5 Score=37.01 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=23.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcC
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALD-LMPDELTYEELINCLCENL 321 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~ 321 (729)
|...-..+...+...|+.+.|.+.+-.+..++ -.-|...-..|+..+.--|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 34444445555555555555555444443321 1123334444555544444
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.56 E-value=0.16 Score=30.73 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|..|+..|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999653
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.52 E-value=7.3 Score=37.69 Aligned_cols=85 Identities=7% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHccCC--
Q 004813 424 RKAYELLGRMVVSSVVPDCATYSAFVLGKCK--LC----NYEDALRVFRQVSAQSL---VLDSISYSKLVEGLCQVEK-- 492 (729)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 492 (729)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666777766666555543322222 11 24456666777766532 2333444444332 2222
Q ss_pred --HHHHHHHHHHHHHCCCCC
Q 004813 493 --ITEAVEVFCCMSKNGCSL 510 (729)
Q Consensus 493 --~~~A~~~~~~~~~~~~~~ 510 (729)
.+.++.+++.+.+.|+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 234455555555555444
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.47 E-value=14 Score=40.44 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhCCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChhh
Q 004813 78 SALKIFKWVSIQKRFQHT--ADTYCKMILKLG-LAGNVEEMEGLCQNMVKERYPNVR-----EALISLVFSFVNHYRVNG 149 (729)
Q Consensus 78 ~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~ 149 (729)
.|++.++.+.++...+|. ..++-.+..++. ...+++.|+..+++.+..--.++- .+...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 445555555443322222 233444455554 455666666666655333211111 12223344444444333
Q ss_pred HHHHHHHHHhCC----CcccHHhHHHH-HHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHH
Q 004813 150 AMRVLVNMNSGG----FKLSVDVFNVV-LGAIVEEKRGFADFVFVYKEMVKAG---IVPNVDTLNYLLEVLF--ETNRIE 219 (729)
Q Consensus 150 A~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~~~~~ 219 (729)
|...+++.++.- ..+-...|..+ +..+... +++..|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 555555543221 11222222222 2222233 45666666665554321 1222333333333332 234445
Q ss_pred HHHHHHHHH
Q 004813 220 SALDQFRRM 228 (729)
Q Consensus 220 ~A~~~~~~m 228 (729)
++.+.++++
T Consensus 197 d~~~~l~~~ 205 (608)
T PF10345_consen 197 DVLELLQRA 205 (608)
T ss_pred hHHHHHHHH
Confidence 555555544
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.39 E-value=0.28 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALI 135 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 135 (729)
+..+...+.+.|++++|+++|+++++.. |.+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 3444455555555555555555555543 33444433
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.08 E-value=5.3 Score=34.45 Aligned_cols=134 Identities=12% Similarity=0.081 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004813 117 GLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
+.++.+.+.+++++...+..++..+.+.|++.....++ ..++-+|.......+-.+. +.+..+.++=-.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44555666677777777777777777777765544443 3334444443333332222 2233333333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 197 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 265 (729)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113556667777777877777777664322 222334456666666665555555554444
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.04 E-value=10 Score=38.15 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 615 PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL---DSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
....+|..++..+.+.|.++.|...+.++...+... ++.....-++.+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888888999999999999998888753111 445566678888888999999998888876
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.96 E-value=1.2 Score=41.92 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRETMLSL 623 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 623 (729)
++..++..+...|+.+.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3445566666667777777777777666544 666677777777777777777777666654 2666666655554
Q ss_pred HHH
Q 004813 624 LHG 626 (729)
Q Consensus 624 ~~~ 626 (729)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.76 E-value=16 Score=39.25 Aligned_cols=273 Identities=12% Similarity=0.024 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHhHHHHHHHHhhcC
Q 004813 389 FFLAKCILEKMADRKIADCDSWNIPIRW-----LCENEEIRKAYELLGRMVV-------SSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~ll~~~~~~~ 456 (729)
...|.++++...+.|.. ..-..+..+ +....+.+.|+..|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 56777888877777643 222222222 3356688888888888766 44 3334555555665532
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 004813 457 -----NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ-VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC----VMR 526 (729)
Q Consensus 457 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 526 (729)
+.+.|..++....+.|.. +....-..+..... ..+...|.++|....+.|. ...+-.+..+|. ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCC
Confidence 566688888777776643 44333222222222 2456788888888877763 222222222222 234
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHH---Hh----cCCH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI-QSM---SE----QNKL 598 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~----~~~~ 598 (729)
+.+.|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+.|.. ...+-...+ ... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccch
Confidence 6777888888877776 3332222222233333 6677777666666665543 222222111 111 11 1244
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcCChhH
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADG----SQLHLVSSGINKLVSDSEVLDSSMYNILINGLW----KEGLTSQ 670 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~ 670 (729)
..+...+.+....| +......+...|... .+.+.|...+....+.+ ...+|+ +...+- ..+ +..
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHL 527 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHH
Confidence 55555555555433 334444455444432 34666777666666653 222232 333322 223 566
Q ss_pred HHHHHHHHHhC
Q 004813 671 ASYLLDLMLGK 681 (729)
Q Consensus 671 A~~~~~~~~~~ 681 (729)
|.++++...+.
T Consensus 528 a~~~~~~~~~~ 538 (552)
T KOG1550|consen 528 AKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHhc
Confidence 66666666553
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.73 E-value=0.13 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 640 INKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
+++.++. -|.++..|+.++..|...|++++|+
T Consensus 2 y~kAie~-~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL-NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH-CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555 3667788888888888888888875
No 286
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.65 E-value=13 Score=37.84 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
|.....+++..+..+-...-...+..+|...| -+-..+..++++|... ..++-..+|+++.+..+ .|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444455555555555555555555555533 3444555555555554 33444555555544331 22222222333
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~ 575 (729)
-|.+ ++.+.+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3332 444455555554443
No 287
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.95 E-value=22 Score=38.89 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHh
Q 004813 89 QKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDV 168 (729)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 168 (729)
.++.+.....-...+..+++.+++....+++.. .+.+.........+....|+.++|......+=..| ...+..
T Consensus 92 ~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~ 165 (644)
T PRK11619 92 NPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNA 165 (644)
T ss_pred CCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChH
Confidence 333444444445555566666666666653211 24455555666666777777666655555553222 223344
Q ss_pred HHHHHHHHHhc
Q 004813 169 FNVVLGAIVEE 179 (729)
Q Consensus 169 ~~~ll~~~~~~ 179 (729)
++.++..+.+.
T Consensus 166 cd~l~~~~~~~ 176 (644)
T PRK11619 166 CDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHc
Confidence 44444444433
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.90 E-value=0.39 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD 686 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 686 (729)
.+|..++..|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4577788888888888888888888776 3454
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.83 E-value=7.8 Score=33.44 Aligned_cols=129 Identities=12% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 004813 188 FVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL- 266 (729)
Q Consensus 188 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 266 (729)
+.+..+.+.+++|+...|..++..+.+.|++.... .+...++-+|.......+-.+. +....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 34444556677777778888888888877755433 3444455566655554443222 2333334433333321
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 267 GIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
+ ..+..+++.+...|++-+|+++....... +......++.+..+.+|...=..+++
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12555666777778887777777664321 22223345555555555444333333
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.58 E-value=14 Score=35.81 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
..+.++++.+.+.|++.....|..++
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 35566666666666555555554433
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.40 E-value=8.2 Score=32.85 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhc
Q 004813 108 LAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEE 179 (729)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (729)
+.++.++++.+++-+.-.. |.....-..-...+...|++.+|..+|+.+.+. .|.......|+..|...
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 4455555555555554443 222333333334445555555555555555432 23333344444444443
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.30 E-value=0.45 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|..+...+...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888876
No 293
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.24 E-value=27 Score=38.49 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=121.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHH-HHhhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 004813 418 CENEEIRKAYELLGRMVVSSVVPDCA-------TYSAFVL-GKCKLCNYEDALRVFRQVSAQ----SLVLDSISYSKLVE 485 (729)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 485 (729)
....++.+|..++.++...-..|+.. .++.+-. .....|+++.+.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44678888888888876543232221 2222221 233568888888888777653 23445667777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhcCCHHHH--HHHHHHHHHcC---CC---CCHHhHHH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSS---FNILIY--GLCVMRKVDKA--IRLRSLAYSSG---TS---YTTSTYTK 552 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~~~~~~A--~~~~~~~~~~~---~~---~~~~~~~~ 552 (729)
+..-.|++++|..+..+..+..-.-+... |..+.. .+...|+...+ ...|....... .+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999988887765321223333 333322 34456633332 33333332221 01 12234444
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 004813 553 IMLGLVKLQ-RAKDLLVVLAQMLVEGCALDVEAY--CILIQSMSEQNKLKDCALFFNVMVKAGLVP----DRETMLSLLH 625 (729)
Q Consensus 553 l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~ 625 (729)
++.++.+.. ...++..-+.--......|-...+ ..|+......|++++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 555554421 122222222222222233322222 267778888999999999999988753332 2222222222
Q ss_pred --HHhccCChHHHHHHHHH
Q 004813 626 --GLADGSQLHLVSSGINK 642 (729)
Q Consensus 626 --~~~~~g~~~~A~~~~~~ 642 (729)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23457888888777766
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.11 E-value=11 Score=33.70 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHc-------CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004813 58 RHNLSPDHLIRVLDN-------TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNV 130 (729)
Q Consensus 58 ~~~~~~~~~~~~l~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 130 (729)
...++.+..+..+-. .|-+..|.--|.++.... |.-+.+||-+.--+...|+++.|.+.|+...+.+...+
T Consensus 56 ~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 56 SRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 345666665555543 345566666666665543 44467788777778888888888888888888774444
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
-...+.-|..| --|+++-|.+-|.+.-+
T Consensus 134 Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 134 YAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 44444444333 56788888777766643
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.05 E-value=8.9 Score=32.64 Aligned_cols=53 Identities=8% Similarity=-0.145 Sum_probs=24.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 453 CKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
.+.++.+++..++..+.-..+. ....-..-...+...|++++|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666555543222 1111111222344556666666666665543
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.82 E-value=0.57 Score=28.21 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=4.6 Score=38.09 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 004813 507 GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSG---TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVE 583 (729)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 583 (729)
|.+....+...++..-....+++.+...+-+++..- ..++.. -..+++.+.+ -++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444555566666666666777888888777776531 112211 1223333333 35668888888878888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887777654
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.49 E-value=0.011 Score=50.30 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=27.0
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFR 226 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 226 (729)
..+.+. +.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~-~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEER-NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTT-T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhC-CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333334 5555555555555554444455556666666666655555555554
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.41 E-value=3.8 Score=36.13 Aligned_cols=60 Identities=5% Similarity=-0.025 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
+..+..-|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444555555555555555444322211 2223344444444555555555444444
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.38 E-value=2.9 Score=36.87 Aligned_cols=97 Identities=15% Similarity=-0.073 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCHHhHH--H
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEV-LDSSMYN--I 657 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~--~ 657 (729)
..+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++...-.. .|...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677888999999999999999999998644443 356678888888999999999998887765111 1222111 1
Q ss_pred --HHHHHHhcCChhHHHHHHHHHH
Q 004813 658 --LINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 658 --l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
-+-.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1223345689999888876654
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.98 E-value=37 Score=36.62 Aligned_cols=248 Identities=13% Similarity=0.068 Sum_probs=138.8
Q ss_pred hcCChhHHHHHHHHHHh-------CCCCCcccchHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 385 NAGKFFLAKCILEKMAD-------RKIADCDSWNIPIRWLCENE-----EIRKAYELLGRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 385 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
...+.+.|...|+.+.+ .+ .......+..+|.+.. +.+.|+.++.+....| .|+...+...+...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 44455556665555544 33 4556677777777643 6677889888888877 44555554444333
Q ss_pred hh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 453 CK-LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC--QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVD 529 (729)
Q Consensus 453 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (729)
.. ..+...|.++|....+.|.. +...+.+++.... -..+...|..++.+..++| .|....-...+..+.. +.++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 33 35678899999998888754 2222222222111 2347888999999998887 3332222233333444 7777
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHH---Hh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGL---VK----LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ----NKL 598 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~ 598 (729)
.+.-.+..+.+.|.......-..++... .. ..+.+.+...+......| +......+.+.|..- .++
T Consensus 415 ~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 415 TALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred HHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCCh
Confidence 7777766666665322221111111111 11 124556666666666554 444555555555432 357
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHhC
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGL----ADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~ 646 (729)
+.|...|......+ ....-.+...+ .... +..|.+++++..+.
T Consensus 492 ~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 492 EKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 77887777777654 22222333222 2233 67777777777765
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=6.4 Score=37.19 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=68.3
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC--CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSS---VVP--DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISY 480 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 480 (729)
...+-...+..-...++++.+...+-+++..- ..| +.+++..++.. -++++++.++..=++.|+-||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhH
Confidence 44555555555566777888888877775431 112 23333333332 3567888888888888999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
+.+++.+.+.+++.+|..+...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998888877654
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.94 E-value=19 Score=33.28 Aligned_cols=82 Identities=10% Similarity=0.178 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHhhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHccC
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDC---ATYSAFVLGKCKLCNYEDALRVFRQVSAQ---SL--VLDSISYSKLVEGLCQVE 491 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 491 (729)
..++++|+.-|.+.++....-.. ..+..++....+.+++++..+.+.++... .+ .-+....+.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34666666666666544222222 23344455566666666666666665421 00 113334455555554444
Q ss_pred CHHHHHHHHH
Q 004813 492 KITEAVEVFC 501 (729)
Q Consensus 492 ~~~~A~~~~~ 501 (729)
+.+--.++++
T Consensus 120 ~m~LLQ~FYe 129 (440)
T KOG1464|consen 120 NMDLLQEFYE 129 (440)
T ss_pred hhHHHHHHHH
Confidence 4444444443
No 304
>PRK09687 putative lyase; Provisional
Probab=88.83 E-value=23 Score=34.07 Aligned_cols=235 Identities=12% Similarity=0.053 Sum_probs=138.8
Q ss_pred CCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHCCCCCCHHH
Q 004813 439 VPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI----TEAVEVFCCMSKNGCSLSSSS 514 (729)
Q Consensus 439 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 514 (729)
.+|.......+.++...|..+. ...+..+... +|...-...+.+++..|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3455555555666666664332 2233333332 3555555666666666653 4567777766433 456666
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 515 FNILIYGLCVMRKV-----DKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589 (729)
Q Consensus 515 ~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 589 (729)
-...+.++...+.. ..+...+..+.. .++..+-...+.++.+.++ .++...+-.+.+. +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 65666666554321 223333333332 3455555566677777775 5666776666653 3444444455
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 590 QSMSEQN-KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 590 ~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
.++...+ +...+...+..+.. .++..+-...+.++++.|+ ..|...+-+..+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 24466666666664 4577777788888888887 45666666666542 2 234678888888885
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 669 SQASYLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
+|...++.+.+. .||...-...+.+|.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888864 467777776666664
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.51 E-value=0.64 Score=27.56 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A 601 (729)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.40 E-value=43 Score=36.65 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHh--
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLG-IQLELSFYTCIIPMLCR-- 284 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 284 (729)
....+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667999999998876 2233456666655554433222111111 2222111 01122557778888876
Q ss_pred -cCCHHHHHHHHHHHHhC
Q 004813 285 -ENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 285 -~g~~~~A~~~~~~m~~~ 301 (729)
..+..+|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 46788888888777654
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.18 E-value=22 Score=32.95 Aligned_cols=263 Identities=9% Similarity=-0.022 Sum_probs=141.9
Q ss_pred cCChhHHHHHHHHHHhCCCC----CcccchHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHhHHHHHHHHhhcC
Q 004813 386 AGKFFLAKCILEKMADRKIA----DCDSWNIPIRWLCENEEIRKAYELLGRMVVS---SV--VPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~ll~~~~~~~ 456 (729)
..+.++|+.-|++..+.... .-.....++....+.+++++.++.+.+|+.- .+ .-+....+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566777777766654332 2233455677777888888888888777421 11 224456677776666555
Q ss_pred CHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQ-----SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCS-----------LSSSSFNILIY 520 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~ 520 (729)
+.+...++++.-.+. +-+.-..+-.-|...|...+.+.+-.++++++...-.. .=..+|..=|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555444432211 11111223355677788888888888888888653111 11346666778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHH-----HhcCChhHHHHHHHHHHH----cCCCCCHHH---HHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSG-TSYTTSTYTKIMLGL-----VKLQRAKDLLVVLAQMLV----EGCALDVEA---YCI 587 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~----~~~~p~~~~---~~~ 587 (729)
.|....+-..-..+|++..... --|.+.... .++-| .+.|++++|-.-|-+.-+ .| .|...+ |..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 8888888777788888765432 124443333 33333 466788887654433332 23 233322 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKA--GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNI 657 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 657 (729)
|...+.+.|- .-|+.-... .-.|.......++.+|. .+++.+..++++.-... +..|+..-+.
T Consensus 278 LANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~-IM~DpFIReh 342 (440)
T KOG1464|consen 278 LANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSN-IMDDPFIREH 342 (440)
T ss_pred HHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhcc-ccccHHHHHH
Confidence 4444444331 001111111 12345556677888875 44566666666554443 5555544443
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.90 E-value=4 Score=30.91 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++.+-++.+....+.|++.+..+-+++|.+.+++..|.++|+....+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666655543
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.74 E-value=1.4 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+|..+..+|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555555444
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.24 E-value=0.2 Score=42.58 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444555555555555544333344455555555555554444444444
No 311
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=47 Score=35.81 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=57.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDV--EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
++..-|+.++|..+.++|.... .|-. .-.-.+..+|+-.|+-....+++--.+.. ..-|..-...+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3445556666666666666542 1111 11113344555566655555444443331 222333333333345555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGL-TSQASYLLDLMLG 680 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 680 (729)
+....+.+-+.+. ..|.+..=..++-+.+-+|- ..+|..+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 6666666666655 34444333333322222222 2456666666653
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.08 E-value=1.4 Score=27.36 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 652 SSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..+++.|+..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988764
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.94 E-value=3.3 Score=31.72 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666666666666666554
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.81 E-value=2.6 Score=40.03 Aligned_cols=51 Identities=6% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
|.++|.+++|+..|...+. +.| |.+++..-..+|.+..++..|..-....+
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455555555555554443 233 44444444445555555444444443333
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.72 E-value=3.9 Score=36.38 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILING 661 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~ 661 (729)
|.+..++.+.+.+.+.+|+...++-++.+ +.|...-..++..|+-.|++++|..-++..-+. ...+-...|.+++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555677888889999999988877753 235566778889999999999999888877765 233345567777654
Q ss_pred H
Q 004813 662 L 662 (729)
Q Consensus 662 ~ 662 (729)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 316
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.65 E-value=57 Score=36.16 Aligned_cols=197 Identities=11% Similarity=0.037 Sum_probs=106.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCcccH-------HhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCCCHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLVNMNSGGFKLSV-------DVFNVVLGAIVEEKRGFADFVFVYKEMVKA----GIVPNVDTLNY 207 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~ 207 (729)
-......++.+|..++.++...-..|+. ..++.+-.......|+++.+..+-+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3344567889999888888544223222 234554444444448888888877776643 22334556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHH--HHHHhcCCh--hHHHHHHHHHHHC-----C-CCCCHHh
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTF---EIVI--KGLIANSRV--DDSVSILGEMFDL-----G-IQLELSF 274 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~li--~~~~~~g~~--~~a~~~~~~~~~~-----~-~~~~~~~ 274 (729)
+..+..-.|++++|..+..+..+..-.-++..+ ..+. ..+...|+. .+.+..+...... . ..+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777888889999998887766553212233322 2222 234456632 2333333333221 0 0122344
Q ss_pred HHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 275 YTCIIPMLCRENKLEEAIRL----FKMMRALDLMPDELT--YEELINCLCENLRLDDANDILEDMIVIGL 338 (729)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 338 (729)
+..++.++.+ ++.+..- +.--......|-... +..|+......|+.++|...++++.....
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 5555666655 3332222 222112111121111 23566777888999999998888876433
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.62 E-value=1.1 Score=26.37 Aligned_cols=27 Identities=19% Similarity=-0.017 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777788888888888877765
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.46 E-value=22 Score=31.32 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHhccCChHHHH
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCI--LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML-----SLLHGLADGSQLHLVS 637 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~ 637 (729)
+.....+++......-....+.. +...+...|++++|..-++..... |....+. .|.+.....|..++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444455554422212222222 345677888999999888877753 2222332 3445667788999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 638 SGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
..++...+.+. .......-.+++...|+.++|..-|++.++.+
T Consensus 147 ~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 147 KTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99887776532 23345567788899999999999999988764
No 319
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.91 E-value=1.6 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
.|+.+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777777543
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.67 E-value=8.8 Score=33.28 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=35.6
Q ss_pred CCCCH-HHHHHHHHHHhccC----C-------hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 613 LVPDR-ETMLSLLHGLADGS----Q-------LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 613 ~~p~~-~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+.|+. ..+..+..+|...+ + +++|.+.|++..+ ..|+..+|+.-+.... +|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 55663 45556666554322 2 4555566666665 3678788877666654 37777777777
Q ss_pred CCCC
Q 004813 681 KGWV 684 (729)
Q Consensus 681 ~g~~ 684 (729)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6544
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.64 E-value=59 Score=35.39 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 280 PMLCRENKLEEAIRLFKMMRALDLMP---DELTYEELINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (729)
+.+.+.+.+++|++.-+..... .| -...+...|..+...|++++|-...-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3444455555555544433221 11 12334455555555555555555555553
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.60 E-value=33 Score=32.41 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHH
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATT 689 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 689 (729)
+......|..+|.+.+|.++.++.... .+.+...|-.++..|...||--.|.+-++++.+ .|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 344566788899999999999999987 477888888999999999997777777776653 355555443
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.93 E-value=34 Score=32.10 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCC-----CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004813 64 DHLIRVLDNTNDLSSALKIFKWVSIQKR-----FQHT-------ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVR 131 (729)
Q Consensus 64 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~-----~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 131 (729)
+...+.+.-+.|+..|++.-++..+.-. -.++ ......-|++++..++|.++....-...+..-....
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 3455666677788888887776543210 0000 011222345556666666655544433322112222
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 132 EALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 132 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
.....=|-.|.+.+....+.++-....+
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3333333344555555555555544443
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.92 E-value=2.3 Score=24.82 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..+...+...|++++|++.|++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.77 E-value=13 Score=33.08 Aligned_cols=73 Identities=10% Similarity=-0.044 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD---SEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
++|.+.|-.+...+.--++.....|..-|. ..+.++++.++.+..+. +..+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666554444444444444443 55666777777666655 23556677777777777777777664
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.67 E-value=30 Score=31.11 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHH
Q 004813 387 GKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 466 (729)
|-+..|.--|.+.....+.-+..||.+.--+...|+++.|.+.|+...+.++.-+-...|.-+ ++.--|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 333333333444444444344556666666666666666666666666554333322333222 2233455666655554
Q ss_pred HHHhC
Q 004813 467 QVSAQ 471 (729)
Q Consensus 467 ~~~~~ 471 (729)
..-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 44443
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.64 E-value=37 Score=34.37 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=25.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 542 (729)
..|+++.+...+...... +.....+...++......|+++.|...-..|....
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 345555555555444332 22334444555555555555555555555554443
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.63 E-value=6.6 Score=29.81 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
+.=++.+-++.+...+..|++.+..+.+++|.+.+|+.-|+++++-.+.+ ...+...|..++.-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 44567788888888889999999999999999999999999999988854 222445666666544
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=13 Score=38.74 Aligned_cols=97 Identities=8% Similarity=0.103 Sum_probs=49.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004813 214 ETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIR 293 (729)
Q Consensus 214 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (729)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|....+ |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4556666655544332 444566666666666666666666655544 4445555555555554444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 294 LFKMMRALDLMPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 294 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
+-....+.|. +..+| .+|...|+++++.+++.
T Consensus 714 la~~~~~~g~--~N~AF----~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGK--NNLAF----LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhcc--cchHH----HHHHHcCCHHHHHHHHH
Confidence 4444444442 22222 23445566666655543
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=23 Score=36.94 Aligned_cols=150 Identities=13% Similarity=-0.026 Sum_probs=86.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 568 (729)
..|+++.|..++..+. ...-+.+++.+.++|-.++|+++ .+|+.-- .....+.|+.+.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 3466666665444432 22334455566667777777654 3333221 122345677777776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 569 VLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 569 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
+..+.. +..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 655542 556677777777777787777777766553 33445555556666555555555555432
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 649 VLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 649 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.|....+|...|+++++.+++.+-
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233444566777777777766554
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.29 E-value=42 Score=31.76 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRETM 620 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~ 620 (729)
++.....|..+|.+.+|.++-+..+..++ .+...|-.++..++..|+--.|.+-++++.+ .|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455667777777777777777776543 3666677777777777776666665555543 2555554443
No 332
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.27 E-value=59 Score=33.48 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=56.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 349 (729)
.|.....+++..+..+.+..-..-+..+|..-| -+...|..++.+|..+ ..++-..+++++.+..+ |......-+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHH
Confidence 455556677777777777777777777777765 4667777788887777 45666777777776542 333332222
Q ss_pred HHHHccCChHHHHHHHH
Q 004813 350 RGLCEVGKFDESVNFLE 366 (729)
Q Consensus 350 ~~~~~~~~~~~a~~~l~ 366 (729)
..+...++.+.+...|.
T Consensus 139 a~~yEkik~sk~a~~f~ 155 (711)
T COG1747 139 ADKYEKIKKSKAAEFFG 155 (711)
T ss_pred HHHHHHhchhhHHHHHH
Confidence 22222244444444443
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.21 E-value=1.5 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
+..++.++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666777777777777777777653
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.73 E-value=81 Score=34.66 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=13.3
Q ss_pred HHHhccCChHHHHHHHHHHHh
Q 004813 625 HGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~ 645 (729)
..+...|+.++|.....+...
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 345567777777776665543
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.54 E-value=7.7 Score=29.83 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
-+..+-++.+...+..|++.+..+.+++|.+.+++.-|+++|+-++.+ ..+....|..++.-+
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 367777888888889999999999999999999999999999999865 223333677776654
No 336
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.33 E-value=10 Score=33.39 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=48.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLAD 629 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 629 (729)
+-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|++-..+.++. .|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 345666777777777776666421111 223434444556666666666666666653 232 1111222335556
Q ss_pred cCChHHHHHHHHHHHhC
Q 004813 630 GSQLHLVSSGINKLVSD 646 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~ 646 (729)
...+++|+.=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666665
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.03 E-value=29 Score=29.12 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=23.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 109 AGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
..++++++.+++.+.-.. |.....-..-...+...|++.+|.++|+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455555555555554443 22222222223334455555555555555544
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.93 E-value=23 Score=31.33 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=10.9
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 004813 487 LCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~ 506 (729)
+.++|++++|..-|..++..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES 124 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 44555555555555555543
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.72 E-value=2.2 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004813 655 YNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456777777777777777665
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.43 E-value=31 Score=28.99 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 455 LCNYEDALRVFRQVSAQSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
.++.+++..+++.+.-..+. +...++. .-.+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443221 1112222 22234456666666666665553
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.35 E-value=1.6e+02 Score=37.08 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=88.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 278 IIPMLCRENKLEEAIRLFKMM----RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+..+-.+++.+.+|.-.++.- .+.. -...-|-.+...|..-+++|....+...-.. .|+ .
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l--------- 1452 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L--------- 1452 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H---------
Confidence 444555677777777777763 2111 1122233333367777777766665543111 111 1
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
..-+......|++..|...|+++...++.....++-++......|.++...-..+..
T Consensus 1453 -----------------------~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1453 -----------------------YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred -----------------------HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 233444567789999999999999888877778888888888888888777766655
Q ss_pred HHCCCCCCHHhHH-HHHHHHhhcCCHHHHHHHHH
Q 004813 434 VVSSVVPDCATYS-AFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 434 ~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~ 466 (729)
..+- .+....++ .-+.+-.+.++++.......
T Consensus 1510 ~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1510 IINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 4432 22223332 22334466777777766655
No 342
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=43 Score=30.56 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHHc--CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHH-HHhc--
Q 004813 561 QRAKDLLVVLAQMLVE--GCALDVEAYCILI---QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS---LLH-GLAD-- 629 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~-~~~~-- 629 (729)
.++++|+..|+..-+. |-..+...--+++ ..-+..+++.+|+.+|++.....+.-+..-|.. ++. ++|+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 3455555555555442 2221222222222 333567888999999998887654433333321 121 1222
Q ss_pred cCChHHHHHHHHHHHhC
Q 004813 630 GSQLHLVSSGINKLVSD 646 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~ 646 (729)
..+.-.+...+++..+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 35555666677777665
No 343
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=84 Score=35.44 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 004813 63 PDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKER---YPNVREALISLVF 139 (729)
Q Consensus 63 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 139 (729)
+..+...++..++.-....+=.++.+.+ -|..++..|...|+.++|+++|.+..+.. -......+..++.
T Consensus 478 ~~~v~~llrlen~~c~vee~e~~L~k~~-------~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~ 550 (877)
T KOG2063|consen 478 PGLVGPLLRLENNHCDVEEIETVLKKSK-------KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIE 550 (877)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHhcc-------cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHH
Confidence 4445555554443333333333332221 35566677777777777777777765521 1112233333444
Q ss_pred HHHhcCCh--hhHHHHHHHHHhCCCcccH-------------HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH
Q 004813 140 SFVNHYRV--NGAMRVLVNMNSGGFKLSV-------------DVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDT 204 (729)
Q Consensus 140 ~~~~~~~~--~~A~~~~~~~~~~~~~~~~-------------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 204 (729)
-+-..+.- +-..++-.........-.. ..-..++. +... ...+.+...++.+....-.++..-
T Consensus 551 YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~-~l~~-~~~~l~I~YLE~li~~~~~~~~~l 628 (877)
T KOG2063|consen 551 YLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLN-YLKS-KEPKLLIPYLEHLISDNRLTSTLL 628 (877)
T ss_pred HHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHH-Hhhh-hCcchhHHHHHHHhHhccccchHH
Confidence 44444433 4444444444322111100 11122333 3344 677888888888887665667777
Q ss_pred HHHHHHHHHh
Q 004813 205 LNYLLEVLFE 214 (729)
Q Consensus 205 ~~~li~~~~~ 214 (729)
.+.++..|+.
T Consensus 629 ht~ll~ly~e 638 (877)
T KOG2063|consen 629 HTVLLKLYLE 638 (877)
T ss_pred HHHHHHHHHH
Confidence 7788877765
No 344
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.56 E-value=63 Score=31.96 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 509 SLSSSSFNILIYGLCVMRK------------VDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+-|..+|-.++..--..-. .+.-+.+++++++.+ +.+......++..+.+..+.++..+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578888888764432211 345566788887774 356667777888888888888888888888887
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC------CC------CCC--HH---HHHHHHHHHhccCChHHH
Q 004813 577 GCALDVEAYCILIQSMSE---QNKLKDCALFFNVMVKA------GL------VPD--RE---TMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~------~~------~p~--~~---~~~~l~~~~~~~g~~~~A 636 (729)
.+. +...|...++.... .-.++....+|.+.++. +. .++ .. ++..+...+..+|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 444 67777777766543 23577777777776653 21 000 01 112222233456777777
Q ss_pred HHHHHHHHhCC
Q 004813 637 SSGINKLVSDS 647 (729)
Q Consensus 637 ~~~~~~~~~~~ 647 (729)
..+++-+.+.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 77777777663
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.55 E-value=4.3 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHK 230 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 230 (729)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666666666666666666666543
No 346
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.23 E-value=55 Score=31.13 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 492 KITEAVEVFCCMSK-NGCSLSSSSFNILIYGLCV-MR-KVDKAIRLRSLAYSS-GTSYTTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 492 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
.+.+|+++|+..-. ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 44555555552211 1123345555555554443 11 122222222222221 12445555555566666666666666
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 568 VVLAQMLVE-GCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 568 ~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
+.|+..... ++.-|...|..+|+.....|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666655444 444455566666666666666554444433
No 347
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.20 E-value=6.4 Score=26.25 Aligned_cols=41 Identities=24% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
...+.-++.+.|++++|.+..+.+++ ++|++.-...|-...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 44567788888888888888888887 578887666665544
No 348
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=34 Score=32.09 Aligned_cols=33 Identities=30% Similarity=0.193 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHH
Q 004813 657 ILINGLWKEGLTSQASYLLDLML----GKGWVPDATT 689 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~----~~g~~p~~~~ 689 (729)
-++..+.+.|.+.+|..+...+. +..-+|+-.+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 47888889999999987765443 3344555433
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.12 E-value=24 Score=30.75 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGL 627 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (729)
+++|.+.|++..+ ..|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3445555555554 467777776666554
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.58 E-value=12 Score=33.46 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCcccHHhHHHHHHH
Q 004813 100 CKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG--GFKLSVDVFNVVLGA 175 (729)
Q Consensus 100 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~ 175 (729)
...++.+.+.++..+++...+.-++.. |.+......+++.++-.|++++|..-++-..+. ...+....|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 334556677777777777777666654 556667777777777777777777777666432 223444555555544
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.21 E-value=87 Score=32.27 Aligned_cols=100 Identities=7% Similarity=0.002 Sum_probs=63.2
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCChHHHHHHHHHHHhCCCCCCHH
Q 004813 578 CALDVEAY-CILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL---ADGSQLHLVSSGINKLVSDSEVLDSS 653 (729)
Q Consensus 578 ~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~ 653 (729)
..|+..++ +.+++.+.+.|-.++|...|..+... .+|+...|..+++.= ..+| +..+.++++.+... +-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChH
Confidence 34555554 45666777777788888888877764 344555565555431 2222 66677777777665 226777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.|-.....-...|..+.+-.++.+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777766666677777777777666554
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.60 E-value=1.3e+02 Score=33.26 Aligned_cols=466 Identities=8% Similarity=-0.063 Sum_probs=211.2
Q ss_pred cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHH
Q 004813 165 SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNS-RTFEIV 243 (729)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l 243 (729)
+...|.....++.+ |++..+..+..++...-+ .....|..|..... ....++...++++-.. .|-. ..-...
T Consensus 33 ~r~~f~~A~~a~~~--g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDN--RQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPT---LPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCC---CchHHHHHHHH
Confidence 34456665555544 788888887777653211 22333333333221 2234444443333221 2222 222334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 004813 244 IKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRL 323 (729)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 323 (729)
+..+.+.+++....+.+. ..+.+.........+....|+.++|......+-..|. ........++..+.+.|..
T Consensus 106 l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 106 VNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 455566677776665221 1234555555666777778887777666666544432 2334455555555554443
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 324 DDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRK 403 (729)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 403 (729)
.... +..+| ......|+...|..+..............++..+.+- ..+...+... +
T Consensus 180 t~~d-~w~R~----------------~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p---~~~~~~~~~~---~ 236 (644)
T PRK11619 180 DPLA-YLERI----------------RLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDP---NTVETFARTT---G 236 (644)
T ss_pred CHHH-HHHHH----------------HHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCH---HHHHHHhhcc---C
Confidence 3221 11222 2222233333333332222110000012222222222 2222211111 0
Q ss_pred CCCcccchHHHHHHH--hcCCHHHHHHHHHHHHHCC-CCCCHH--hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004813 404 IADCDSWNIPIRWLC--ENEEIRKAYELLGRMVVSS-VVPDCA--TYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSI 478 (729)
Q Consensus 404 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (729)
++...-..++.++. ...+.+.|..++....... ..+... ....+.......+..+++...++...... .+..
T Consensus 237 -~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~ 313 (644)
T PRK11619 237 -PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS 313 (644)
T ss_pred -CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH
Confidence 01111111222222 3455688888888774443 222222 23333333333322556666666554332 2444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
....-+..-.+.++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+... . +|-.++.+ .
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~ 385 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-Q 385 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-H
Confidence 44555555568889998888888885532 223333444666767789999999999887431 1 23222221 1
Q ss_pred hcCChhHH-HHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 559 KLQRAKDL-LVVLA-QMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 559 ~~~~~~~A-~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+.|..-.- ..... .... +.-+. -..-+..+...|....|...+..+.+. .+......+...-...|..+.+
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~--~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSA--LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred HcCCCCCCCCCCCCchhhh--hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence 12211000 00000 0000 00000 112234556677888888877777763 2334444455555566666666
Q ss_pred HHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 637 SSGINKLVSD-----SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 637 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+......... .++ ..|...+..+.+.-..+.+.-+---..+.++.|+.
T Consensus 459 i~~~~~~~~~~~~~~rfp---~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 459 VQATIAGKLWDHLEERFP---LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHhhchhHHHHHHhCC---cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 6555433221 111 12444555555444444444322223344555554
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.83 E-value=44 Score=27.56 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 614 VPDRETMLSLLHGLADGSQ---LHLVSSGINKLVSD-SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.+...+--.+.+++.+..+ ..+.+.+++.+.+. ...........|.-++.+.|+++++.++++.+++ .+||+.-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcHH
Confidence 4455555566666666544 33455566666542 1112233444566667777777777777777766 3555543
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.38 E-value=8.1 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=12.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh
Q 004813 137 LVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 137 l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.26 E-value=53 Score=30.07 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCCh-------HHHHHHHHHHHhCCCCC-----CHHhHH
Q 004813 595 QNKLKDCALFFNVMVKA----GLVPD--RETMLSLLHGLADGSQL-------HLVSSGINKLVSDSEVL-----DSSMYN 656 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-----~~~~~~ 656 (729)
...+++|++.|.-+.-. +-.|. ...+.-+.+.|...|+- ..|.+.|.+..+....| +.....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34455555544433221 22333 33455666777777763 35666666666552221 234555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
.++....+.|+.++|.++|.++...+-
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 677778888999999999999987543
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.70 E-value=20 Score=34.50 Aligned_cols=90 Identities=10% Similarity=-0.020 Sum_probs=55.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR 562 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 562 (729)
.+-|.+.|.+++|+..+...... .| +.+++..-..+|.+...+..|..-...+...+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 34578888888888888877664 34 77777777788888888887776666655432 1112233333333334455
Q ss_pred hhHHHHHHHHHHHc
Q 004813 563 AKDLLVVLAQMLVE 576 (729)
Q Consensus 563 ~~~A~~~~~~~~~~ 576 (729)
..+|.+-++..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55555555555554
No 357
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.45 E-value=82 Score=30.05 Aligned_cols=63 Identities=5% Similarity=-0.011 Sum_probs=35.6
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 004813 233 CCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL-GIQLELSFYTCIIPMLCRENKLEEAIRLF 295 (729)
Q Consensus 233 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (729)
..++..+...++..++..+++.+-.++++..... +..-|...|..+|+.....|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3455555555666666666666666666555533 44455555666666666666655444443
No 358
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.21 E-value=9.3 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555556666666666666665554
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.46 E-value=68 Score=28.71 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhHHH
Q 004813 182 GFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK---GCCPNSRTFEIVIKGLIANSRVDDSV 257 (729)
Q Consensus 182 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~ 257 (729)
+-+.|.+.|-++...+.--+......|...|. ..+.+++++++....+. +-.+|+..+.+|...+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34667777777776654445555555555554 45777777777766552 33567777777777777777777663
No 360
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.44 E-value=1.2e+02 Score=31.40 Aligned_cols=7 Identities=57% Similarity=0.928 Sum_probs=3.2
Q ss_pred HCCCCCC
Q 004813 195 KAGIVPN 201 (729)
Q Consensus 195 ~~g~~~~ 201 (729)
+.|..|+
T Consensus 23 ~~g~~~n 29 (413)
T PHA02875 23 DIGINPN 29 (413)
T ss_pred HCCCCCC
Confidence 3454444
No 361
>PRK09687 putative lyase; Provisional
Probab=72.61 E-value=94 Score=29.95 Aligned_cols=60 Identities=18% Similarity=0.076 Sum_probs=25.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENL-RLDDANDILEDMI 334 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 334 (729)
+..+-...+.++++.++ +.+...+-.+.+. +|...-...+.++.+.+ +...+...+..+.
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 44444455555555554 3344444443332 33333333344444332 1234444444444
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.29 E-value=1.3e+02 Score=30.97 Aligned_cols=36 Identities=6% Similarity=-0.121 Sum_probs=17.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
|...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 34445555555555554433 2344455555555443
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.17 E-value=72 Score=27.97 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=23.3
Q ss_pred hHHHHhhcCCCCCHHHHHHHHHc--CCChHHHHHHHHHhhhC
Q 004813 50 YEAKIQSLRHNLSPDHLIRVLDN--TNDLSSALKIFKWVSIQ 89 (729)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~A~~~~~~~~~~ 89 (729)
.+.+...|.-.+....+.+.++. ..++++-..+++++...
T Consensus 4 ~e~v~n~W~~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~ 45 (200)
T cd00280 4 AEAVANRWVLDFYFHSACRAFREGRYEDFRRTRDIAEALLVG 45 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhc
Confidence 34444555545555556666653 34667777777777654
No 364
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.85 E-value=1.1e+02 Score=30.16 Aligned_cols=98 Identities=9% Similarity=-0.048 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHcc---CC---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004813 476 DSISYSKLVEGLCQV---EK---------ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT 543 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~---g~---------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 543 (729)
|+.+|-.++..--.. +. .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 666666666533221 11 234456677766653 3455666667777777777777777777777653
Q ss_pred CCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHH
Q 004813 544 SYTTSTYTKIMLGLVK---LQRAKDLLVVLAQMLV 575 (729)
Q Consensus 544 ~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 575 (729)
+-+...|...++.... .-.+++...+|.+.+.
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3356666666655433 2346667666666554
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=2e+02 Score=32.67 Aligned_cols=116 Identities=4% Similarity=0.012 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCC--Ccc-cHHhHHHHHHHHHhcCCCh--hHHHHHHHHHHHCCCCCCHHHHH-
Q 004813 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGG--FKL-SVDVFNVVLGAIVEEKRGF--ADFVFVYKEMVKAGIVPNVDTLN- 206 (729)
Q Consensus 133 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~- 206 (729)
-|..|+..|...|+.++|+++|.+..... ..+ -...+..++.-+.+. +.. +.+.+.-+...+....--...+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l-~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKL-GAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHh-cccchhHHHHHhhhhhccCchhheeeeec
Confidence 58999999999999999999999996632 111 112233355555555 443 44444433333321110000010
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004813 207 -----------YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 207 -----------~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 249 (729)
..+-.|......+-+..+++.+....-.++..-.+.++..|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234467778889999999999886556677777888877764
No 366
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=69.67 E-value=1.3e+02 Score=30.19 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 200 PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP---NSRTFEIVIKGLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 200 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 265 (729)
....+|..+...+.+.|.++.|...+..+...+... ++...-.-.+.+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777777888888888888888777643111 233333445566667777888887777766
No 367
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.03 E-value=8.7 Score=22.02 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
+..+..++.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455566666666666666666644
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.79 E-value=9.6 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.030 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.|..++..+...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456677777777777777777777664
No 369
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.50 E-value=71 Score=26.89 Aligned_cols=81 Identities=12% Similarity=0.216 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHH
Q 004813 169 FNVVLGAIVEEKRGFADFVFVYKEMVKAGI-----VPNVDTLNYLLEVLFETNR-IESALDQFRRMHKKGCCPNSRTFEI 242 (729)
Q Consensus 169 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ 242 (729)
.|.++.-+... +++.....+++.+.-... ..+...|++++.+..+..- --.+..+|..|++.+.+++..-|..
T Consensus 42 iN~iL~hl~~~-~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASY-QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHc-cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666666666 777777777776642210 1244567777777755544 3446677777777667777777777
Q ss_pred HHHHHHhc
Q 004813 243 VIKGLIAN 250 (729)
Q Consensus 243 li~~~~~~ 250 (729)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
No 370
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.31 E-value=5.6 Score=32.35 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 661 GLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
.+...|.-.+|..+|++|++.|-.||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344556677788999999999988884 77777665
No 371
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=68.13 E-value=86 Score=27.68 Aligned_cols=25 Identities=8% Similarity=0.204 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhC
Q 004813 447 AFVLGKCKLCNYEDALRVFRQVSAQ 471 (729)
Q Consensus 447 ~ll~~~~~~~~~~~a~~~~~~~~~~ 471 (729)
+++..|.+..++.++.++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666543
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.34 E-value=39 Score=27.29 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 601 CALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+-++.+....+.|++.+...-+++|.+.+|+..|..+|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555567777777777777777777777777777776665
No 373
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.51 E-value=1.3e+02 Score=29.16 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--------
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLA----DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG-------- 666 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 666 (729)
..|...|.++-..+ +......+...|. -..+.++|...|++..+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666666666554 2223333333332 23356677777777776653 22222233 444444
Q ss_pred -------ChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 667 -------LTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 667 -------~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
+...|..++......|.........
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7777788887777776555444444
No 374
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=65 Score=31.23 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVE---GCALDVEAYC--ILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+...-+.++.++|++.++++.+. .-.|+.+.|. ...+.+...|+..++.+++++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444555667777777766653 2234444443 334445566677777766666655
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.18 E-value=14 Score=37.52 Aligned_cols=113 Identities=7% Similarity=-0.049 Sum_probs=78.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETML-SLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
..+...+.++.|..++.++++ +.||...|. .-..++.+.+++..|+.=+.++++.. +.-...|.--+.++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 345566788888888888887 567654443 33367788888888888888887763 33344555555666666778
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhh
Q 004813 669 SQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRF 707 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 707 (729)
.+|...|+.... +.|+..-..-.+.-|-+....++.+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 888888888776 6788888888887776665554443
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.74 E-value=70 Score=25.41 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=20.0
Q ss_pred cchHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 409 SWNIPIRWLCENEEIRKAYELLGRMVV 435 (729)
Q Consensus 409 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 435 (729)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 567777777777777777777777765
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.44 E-value=65 Score=24.93 Aligned_cols=57 Identities=25% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.+...|++++|..+.+.+ ..||...|-.| +-.+.|..+++...+.+|-..| .|....
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg-~p~lq~ 104 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG-DPRLQT 104 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC-CHHHHH
Confidence 455666666666665544 24565555444 3345666666666666665554 444433
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.06 E-value=1.3e+02 Score=28.45 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVL 212 (729)
Q Consensus 133 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 212 (729)
....-|++++..+++.++..+.-+.-+..-+..+.....=|-.|.+. +.+..+.++-......--..+...|..++..|
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv-~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKV-QEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 44556788888888888877765553221122223333334456677 77888888777777642222334466665555
Q ss_pred H-----hcCCHHHHHHHH
Q 004813 213 F-----ETNRIESALDQF 225 (729)
Q Consensus 213 ~-----~~~~~~~A~~~~ 225 (729)
. -.|.+++|.++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 4 358888887776
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.05 E-value=2.2e+02 Score=30.96 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 664 KEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
+.|++.+|.+.+-.+...++.|...-...|..+.-
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~lp 541 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDALP 541 (566)
T ss_dssp -----------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 44777888777777777777777766666666544
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.05 E-value=1.1e+02 Score=27.32 Aligned_cols=87 Identities=10% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEI-----VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR 284 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (729)
..+...|++++|...++..... |....+.. |.+.....|.+++|+.+++...+.+.. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4455666667766666665542 22222222 233444555666666655555443221 1111122344555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 004813 285 ENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~ 301 (729)
.|+-++|+.-|....+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.77 E-value=46 Score=26.90 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 635 LVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
+..+.+..+...++.|++......++++.+.+|+.-|+++|+-++.+ ..+....|-.++.-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 45666777777789999999999999999999999999999998865 23333345555543
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.03 E-value=29 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=25.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 661 GLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
...+.|-..++..++++|.+.|+.-+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344567777777888888877877777777766653
No 383
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.98 E-value=2e+02 Score=29.73 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHH---HcCCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCCC-----
Q 004813 522 LCVMRKVDKAIRLRSLAY---SSGTSYT-----TSTYTKIMLGLVKLQRAKDLLVVLAQMLV-------EGCALD----- 581 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~p~----- 581 (729)
+.-.|++.+|.+++...- ..|...+ ...||.|.-.+.+.|.+.-+..+|.+.++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445677777766654321 1121111 12235555555556666666666665553 244432
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 582 ------VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 582 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
..+||+-+ .|...|++-.|.+.|.+.+.. +.-++..|.-+..+|.
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 23444333 456677888888888777764 4556677777777764
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.44 E-value=73 Score=29.30 Aligned_cols=120 Identities=10% Similarity=-0.041 Sum_probs=81.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCCh
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVE-AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS-LLHGLADGSQL 633 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~ 633 (729)
-|....+++.|...|.+.+.. .|+.. -|..-+..+.+..+++.+.+--.+.++ +.||...-.. +..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 456667888999888877765 56664 445666777888889888877777776 6777655443 34455667788
Q ss_pred HHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 634 HLVSSGINKLVSD----SEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 634 ~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
++|+..+++.... .+++-...+..|..+=...=...+..++.++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 9999999887443 455555677777666555445556666666553
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.99 E-value=20 Score=26.20 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=21.9
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHT-ADTYCKMILKLGLAGNVEEMEGL 118 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 118 (729)
..++-+.|+..|+.+.+...-+++ ..++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555443222222 22344455555555555554443
No 386
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.93 E-value=1.7e+02 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGL 613 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 613 (729)
.|...|.+....+ +......+...|.. ..+.++|...|....+.|.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5666666655554 23333333333322 3356677777777666554
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.87 E-value=43 Score=30.06 Aligned_cols=32 Identities=19% Similarity=0.040 Sum_probs=23.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 649 VLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 649 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.|++.+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777777777777777777777765
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.43 E-value=24 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 652 SSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
..-.-.++.+|...|++++|.++++++.
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334456666666666666666666654
No 389
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.54 E-value=1.6e+02 Score=27.26 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=57.6
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
.+++++.|++.+-.. ... +..-..++.++...|+.+.|.++++...-. ..+......++.. ...+.+.+|.
T Consensus 90 D~~~~~~A~~~L~~p----s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 90 DHGDFEEALELLSHP----SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred ChHhHHHHHHHhCCC----CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHH
Confidence 347788888877332 111 222335778888888888888888875221 2233334444444 5668888888
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhc
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEE 179 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (729)
.+-+...+. .....+..++..+...
T Consensus 161 ~~~R~~~~~---~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 161 SFQRSYPDE---LRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHhCchh---hhHHHHHHHHHHHHHH
Confidence 777766442 1245666667666644
No 390
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.36 E-value=1.9e+02 Score=28.08 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH----HhCCCcccH
Q 004813 92 FQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE-RYPNVREALISLVFSFVNHYRVNGAMRVLVNM----NSGGFKLSV 166 (729)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 166 (729)
...|...++.|... ...+.++..+..++..+. |-..-..++.....-|++.|+-+.|.+.+.+. ...|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34445444444321 223344444444444333 21223456666677777777777777776655 334556666
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 167 DVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVD----TLNYLLEVLFETNRIESALDQFRRMHK 230 (729)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~ 230 (729)
..+..-+..+.-...-..+-++..+.+.+.|...+.. +|..+- +...+++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 6555555444322122233444444455555433321 222221 2223466666666655443
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.24 E-value=1.2e+02 Score=25.62 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHH
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMHKKG-----CCPNSRTFEIVIKGLIANSR-VDDSVSILGEMFDLGIQLELSFYTCI 278 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 278 (729)
.|.++......+++...+.+++.+..-. -.-+..+|.+++++.++... ---+..+|..+++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556666666666666666666653210 01234455566665544433 33445555555555555555555555
Q ss_pred HHHHHh
Q 004813 279 IPMLCR 284 (729)
Q Consensus 279 i~~~~~ 284 (729)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.54 E-value=75 Score=33.33 Aligned_cols=100 Identities=11% Similarity=-0.032 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 96 ADTYCKMILKLGL-AGNVEEMEGLCQNMVKERYPN-VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 96 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
...++.+...|-+ .|+..+|...+........+. -.....++...+-+.|...+|--++..+......... -+-.+-
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~-n~y~l~ 290 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS-NYYTLG 290 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccc-cceeHH
Confidence 3444445554444 456666666655544332111 1223445555566666666665555544332111000 022233
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCC
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKAG 197 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~g 197 (729)
.+++.. +++......|++..+.|
T Consensus 291 ~i~aml-~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 291 NIYAML-GEYNHSVLCYDHALQAR 313 (886)
T ss_pred HHHHHH-hhhhhhhhhhhhhhccC
Confidence 334444 55555555555554443
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.86 E-value=22 Score=26.03 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=24.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHHHH
Q 004813 629 DGSQLHLVSSGINKLVSDSEVL--DSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
..++.++|+..++...+.-..+ -..++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665551111 112455566666666666665544
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.74 E-value=56 Score=25.05 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=16.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.++......|++++|.+.+++..+
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566666777777777777664
No 395
>PRK10941 hypothetical protein; Provisional
Probab=55.25 E-value=1.2e+02 Score=28.85 Aligned_cols=76 Identities=13% Similarity=-0.075 Sum_probs=46.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHhhhh
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK-GWVPDATTHGLLVGSSV 698 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~ 698 (729)
.+-.+|.+.++++.|+.+.+.+... .|.++.-+.--+-.|.+.|.+..|..=++...+. .-.|+.......+....
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 4455666677777777777777665 3555556666666677777777777666666543 23455555555555443
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.68 E-value=90 Score=23.48 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=4.5
Q ss_pred HHHHHHHHcC
Q 004813 328 DILEDMIVIG 337 (729)
Q Consensus 328 ~~~~~m~~~~ 337 (729)
++++.+.+.|
T Consensus 23 ~v~d~ll~~~ 32 (88)
T cd08819 23 DVCDKCLEQG 32 (88)
T ss_pred HHHHHHHhcC
Confidence 3444444444
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.58 E-value=50 Score=29.67 Aligned_cols=33 Identities=6% Similarity=-0.131 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.|+..++..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466667777777777777777777777766553
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.93 E-value=2.7e+02 Score=28.73 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCH
Q 004813 213 FETNRIESALDQFRRMHKKGCCPNSRT--FEIVIKGLIANSRVDDSVSILGEMFDLGIQLELS--FYTCIIPMLCRENKL 288 (729)
Q Consensus 213 ~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 288 (729)
+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. ...+-+...+..|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 345555443 33344566555432 2234444455566543 33344445444322 112234445556666
Q ss_pred HHHHHHH
Q 004813 289 EEAIRLF 295 (729)
Q Consensus 289 ~~A~~~~ 295 (729)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544444
No 399
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.41 E-value=90 Score=24.01 Aligned_cols=61 Identities=10% Similarity=-0.011 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
+.-.+.+++...++....+-....|.-.|.+.|+.+.|++-|+.=+. .-|...+|.-++-.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFLmk 114 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFLMK 114 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHHHH
Confidence 44455666666665555556666788888888999998888887665 46777666544433
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.79 E-value=1e+02 Score=23.22 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHH
Q 004813 595 QNKLKDCALFFNVMV 609 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~ 609 (729)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344455555555444
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.51 E-value=67 Score=33.69 Aligned_cols=99 Identities=10% Similarity=-0.050 Sum_probs=52.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSG 639 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (729)
.|+...|...+.......+.-..+....|...+.+.|-...|..++.+.+... ...+-++..+.++|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46666666666555443222222233344444455555556666666555543 23444555666666666666666666
Q ss_pred HHHHHhCCCCCCHHhHHHHHH
Q 004813 640 INKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~l~~ 660 (729)
|+++.+. .+.++++-+.|..
T Consensus 699 ~~~a~~~-~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKL-TTKCPECENSLKL 718 (886)
T ss_pred HHHHHhc-CCCChhhHHHHHH
Confidence 6666665 2334444444443
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.45 E-value=2.2e+02 Score=28.99 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHH--HhcCChhHHHHHHHHHHHc
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTTS--TYTKIMLGL--VKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~~~~~~~~~~ 576 (729)
..+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999998876 455444 344455554 3456788888888887664
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.30 E-value=94 Score=27.29 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHC
Q 004813 598 LKDCALFFNVMVKA 611 (729)
Q Consensus 598 ~~~A~~~~~~~~~~ 611 (729)
++.|+-+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 45566666665554
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.03 E-value=1e+02 Score=23.56 Aligned_cols=23 Identities=0% Similarity=-0.181 Sum_probs=12.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhC
Q 004813 624 LHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.......|+.++|...+++.++.
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444556666666666555443
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.99 E-value=2.8e+02 Score=28.01 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=63.9
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------C------------------
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE-------R------------------ 126 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~------------------ 126 (729)
...+++.-..+++. .|--..++-.+..++.++|+...|.+++++.+-. .
T Consensus 22 ~~~Dp~~l~~ll~~------~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~ 95 (360)
T PF04910_consen 22 QSHDPNALINLLQK------NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR 95 (360)
T ss_pred HccCHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence 33466666655532 2445667777777888888887777777665311 0
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004813 127 YPNVREALIS---LVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMV 194 (729)
Q Consensus 127 ~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 194 (729)
...|...|.+ .+..+.+.|-+..|.++.+-+...+..-|+......|..++-..++++-.+++.+...
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 0112333332 2345556666666666666665554333555555555555433355555555555544
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.86 E-value=1.2e+02 Score=23.63 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 004813 75 DLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVL 154 (729)
Q Consensus 75 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 154 (729)
..++|.-+-+|+...+.. ...+--.-+..+...|+|++|..+.+.+ +.|+...|..|-. .+.|-.+++...+
T Consensus 20 cHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 456777777776544211 1112222334566677777777665554 3455555554433 3556566666666
Q ss_pred HHHHhCCCcccHHhH
Q 004813 155 VNMNSGGFKLSVDVF 169 (729)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (729)
.++...| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6665554 3433333
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.67 E-value=3e+02 Score=28.41 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=11.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH
Q 004813 251 SRVDDSVSILGEMFDLGIQLELS 273 (729)
Q Consensus 251 g~~~~a~~~~~~~~~~~~~~~~~ 273 (729)
++.+.|...+..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555444433
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.08 E-value=48 Score=23.02 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
.+|.+|...|++++|.++.+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 409
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.08 E-value=64 Score=20.98 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhH
Q 004813 216 NRIESALDQFRRMHKKGCCPNSRTF 240 (729)
Q Consensus 216 ~~~~~A~~~~~~m~~~~~~p~~~~~ 240 (729)
|-..++..++++|.+.|+.-+...|
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333444444444444433333333
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.90 E-value=42 Score=18.80 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHh
Q 004813 633 LHLVSSGINKLVS 645 (729)
Q Consensus 633 ~~~A~~~~~~~~~ 645 (729)
.+.|..+++++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.39 E-value=80 Score=33.68 Aligned_cols=72 Identities=8% Similarity=0.043 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChH------HHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKA--GLVPDRETMLSLLHGLADGSQLH------LVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
+|+.+|...|++.++.++++..... |-+.-...+|..++...+.|.++ .|.+.+++.. ..-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6777777777777777777777654 22222345666666666666543 2333333333 23355555555
Q ss_pred HHH
Q 004813 659 ING 661 (729)
Q Consensus 659 ~~~ 661 (729)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 443
No 412
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.36 E-value=4.1e+02 Score=29.48 Aligned_cols=22 Identities=14% Similarity=0.079 Sum_probs=14.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 004813 313 LINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~ 334 (729)
|+..|...+++..|+.++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5666666677777776665553
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.66 E-value=2.3e+02 Score=28.85 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCChhhHHHHHHHHHhC
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVRE--ALISLVFSFV--NHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 160 (729)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556788999999999998876 555544 4444545553 456888888888887543
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.80 E-value=20 Score=29.31 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=9.8
Q ss_pred CChhHHHHHHHHHHHCCCCCC
Q 004813 181 RGFADFVFVYKEMVKAGIVPN 201 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~ 201 (729)
|.-..|..+|.+|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334444455555555444443
No 415
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.00 E-value=2.7e+02 Score=26.80 Aligned_cols=67 Identities=10% Similarity=0.256 Sum_probs=35.9
Q ss_pred CCHHHHHHHHH-HHHhCCCCCCh----hhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 004813 216 NRIESALDQFR-RMHKKGCCPNS----RTFEIVIKGLIANSR-VDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLE 289 (729)
Q Consensus 216 ~~~~~A~~~~~-~m~~~~~~p~~----~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (729)
..+++...... +|++.++ |+. ..|+.++++-.-+.+ ---|.+.++++++ |..|+.+++..|+.+
T Consensus 269 ~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~---------yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQ---------YAPLLAAFCSQGQSE 338 (412)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHh---------hhHHHHHHhcCChHH
Confidence 34445444443 4554443 444 346666655433221 1124444444443 788888899888877
Q ss_pred HHH
Q 004813 290 EAI 292 (729)
Q Consensus 290 ~A~ 292 (729)
-.+
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 554
No 416
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.36 E-value=2.5e+02 Score=26.11 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 004813 74 NDLSSALKIFKWVSIQKRFQHTA-DTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMR 152 (729)
Q Consensus 74 ~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 152 (729)
.++..|...+-+++.. .|+. .-|..-+-.+.+..+|+.+..=-.+.++.. +........+..++.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHHH
Confidence 3466777777766655 2333 334555556666777777766555555543 3444555566666777777777777
Q ss_pred HHHHHH----hCCCcccHHhHHHHHHHH
Q 004813 153 VLVNMN----SGGFKLSVDVFNVVLGAI 176 (729)
Q Consensus 153 ~~~~~~----~~~~~~~~~~~~~ll~~~ 176 (729)
.+.+.. ...+.+.......|..+-
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 777762 223333344444444443
No 417
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.21 E-value=2.8e+02 Score=26.72 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHccCCHHHH
Q 004813 478 ISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 478 ~~~~~l~~~~~~~g~~~~A 496 (729)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3566666666666665443
No 418
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.23 E-value=3.6e+02 Score=27.62 Aligned_cols=74 Identities=5% Similarity=0.090 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE 665 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 665 (729)
.|+.-|...|+..+|.+.+.++--- +.-...++.+++.+..+.|+-+..+.+++.....| ..|-+.|-++|.+-
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhh
Confidence 4555666666666666666554211 11133455566666666666665566665555443 34444455555443
No 419
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.92 E-value=2.6e+02 Score=25.87 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=32.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CC-----------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 004813 592 MSEQNKLKDCALFFNVMVKA-GL-----------VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 650 (729)
+...|+..+|+..++.-... |. .|.+.....++..|. .+++++|.+++.++-+.|+.|
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 34567777777777665432 11 244444444554443 345666666666666665543
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.82 E-value=3.4e+02 Score=27.34 Aligned_cols=57 Identities=11% Similarity=-0.042 Sum_probs=36.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-EQNKLKDCALFFNVMVK 610 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~ 610 (729)
+..+.+.|-+..|+++.+-+...++.-|......+|+.|+ +.++++--+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456667777777777777777655555666566666664 56666666666666544
No 421
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.55 E-value=17 Score=35.03 Aligned_cols=93 Identities=11% Similarity=-0.003 Sum_probs=52.3
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..|.++.|++.|..++... +++...|..-..++.+.+++..|++=++...+.+ +.+..-|-.-..+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHH
Confidence 3456666666666665543 4555556666666666666666666666655543 222333333334444456666666
Q ss_pred HHHHHHHhCCCcccHH
Q 004813 152 RVLVNMNSGGFKLSVD 167 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (729)
..|....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 6666665555444443
No 422
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.54 E-value=2.4e+02 Score=25.92 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004813 198 IVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP-----NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLEL 272 (729)
Q Consensus 198 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 272 (729)
+.+...-+|.|+--|.-...+.+|-+.| ..+.|+.| +...-..-|+.....|+++.|++....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred HhHHHHHHH----HHhcCCHHHHHHHHHH
Q 004813 273 SFYTCIIPM----LCRENKLEEAIRLFKM 297 (729)
Q Consensus 273 ~~~~~li~~----~~~~g~~~~A~~~~~~ 297 (729)
..+-.|..- ..|.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.18 E-value=1.6e+02 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 275 YTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777665
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.44 E-value=3.2e+02 Score=26.57 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPDR---ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS 652 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 652 (729)
+..+..+.|+..+|.+.++++.+. .|-. .+-..|+.+|....-+.+...++-+.-+...+.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 444445788999999998888764 2322 23346777877777777777777666655444443
No 425
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.39 E-value=99 Score=20.69 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHh
Q 004813 136 SLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 136 ~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
.+.-++.+.|++++|.+..+.+.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344455566666666666666654
No 426
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.98 E-value=2e+02 Score=27.88 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=29.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHK 230 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 230 (729)
+....+. ++.......++.+. ....-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr-~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKR-QNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3333343 45555555555554 333444556666677777777777776654
No 427
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.84 E-value=8.6e+02 Score=31.35 Aligned_cols=158 Identities=12% Similarity=0.108 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 60 NLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMIL-KLGLAGNVEEMEGLCQNMVKERYPNVREALISLV 138 (729)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 138 (729)
..+...+..+--+++.+..|+-.|+.-.......-....+..++. .|+.-++++.+..+...-.. .| .+..-|
T Consensus 1383 ~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qi 1456 (2382)
T KOG0890|consen 1383 LIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQI 1456 (2382)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHH
Confidence 344556666777889999999998873111101112234444444 89999999998888774111 11 233444
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCC
Q 004813 139 FSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYL-LEVLFETNR 217 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~~~ 217 (729)
-.....|+++.|...|+++.+.+ ++....++-++...... |.+..+....+-.... ..+....|+.+ +.+--+.++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~-~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAI-QHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcc-cchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcc
Confidence 55667899999999999998764 44466677777666666 7888777766655543 23333344333 344456777
Q ss_pred HHHHHHHHH
Q 004813 218 IESALDQFR 226 (729)
Q Consensus 218 ~~~A~~~~~ 226 (729)
++.......
T Consensus 1534 wD~~e~~l~ 1542 (2382)
T KOG0890|consen 1534 WDLLESYLS 1542 (2382)
T ss_pred hhhhhhhhh
Confidence 777666654
No 428
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.78 E-value=21 Score=34.53 Aligned_cols=86 Identities=5% Similarity=-0.141 Sum_probs=36.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE-TMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~ 638 (729)
.|.+++|++.|...+...+ +....|..-.+.+.+.+....|++=++..++ +.||.. -|-.--.+-+-.|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 3445555555555444421 2333333344444455555555544444443 223321 11111222223455555555
Q ss_pred HHHHHHhCCC
Q 004813 639 GINKLVSDSE 648 (729)
Q Consensus 639 ~~~~~~~~~~ 648 (729)
.+....+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555554433
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.70 E-value=49 Score=31.64 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRET 619 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 619 (729)
|+..|....+.||+++|+.++++.++.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34566666666666666666666666665533333
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.33 E-value=1.9e+02 Score=23.71 Aligned_cols=43 Identities=19% Similarity=0.021 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 635 LVSSGINKLVSDSEVLD-SSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
.+.++|+.|...|+-.. +..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777654433 34566777777777888888777765
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.80 E-value=1.7e+02 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=14.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004813 172 VLGAIVEEKRGFADFVFVYKEMVKAGIVP 200 (729)
Q Consensus 172 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~ 200 (729)
++..+.+. ++.-.|.++++++.+.++.-
T Consensus 26 vl~~L~~~-~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 26 VLELLLEA-DGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHhCCCC
Confidence 44444444 44455555555555554433
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.61 E-value=2.3e+02 Score=27.30 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.++|+.+.+.++.|.-.++..+.-.+.+.=.+...+.+|+.+.. |..-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 35566666666666666666555555555566666667766664 2222445555444
No 433
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=41.29 E-value=5.6e+02 Score=28.74 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=36.3
Q ss_pred cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 004813 165 SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLF---ETNRIESALDQFRRMHK 230 (729)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~ 230 (729)
+...+..||..+.+. |++++....-.+|.+. .+.+...|-..+.... ..+...++..+|++...
T Consensus 112 ~~~~~v~Li~llrk~-~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKL-GDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred chHHHHHHHHHHHHh-cchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 344456666666676 7777766666666554 2334555554444332 23556666666666554
No 434
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.06 E-value=76 Score=32.50 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=55.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI-LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR 562 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 562 (729)
.+.+.+.++++.|..++.++++. .|+-..|-. -..++.+.+++..|+.=+..+.+.. +.....|.-=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34445566777777777777764 454443322 2256666777777766666666543 1112233333344455555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 563 AKDLLVVLAQMLVEGCALDVEAYCILIQSM 592 (729)
Q Consensus 563 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 592 (729)
+.+|+..|+..... .|+..-..-.+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 66666666655443 55555544444433
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.78 E-value=64 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.220 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
|+..|..-.+.||.++|+.+++|..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345666666666666666666666666654
No 436
>PRK10941 hypothetical protein; Provisional
Probab=39.44 E-value=3.5e+02 Score=25.89 Aligned_cols=61 Identities=8% Similarity=-0.167 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
.+.+-.+|.+.++++.|..+.+.+.... +.++.-+.----.+.+. |.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHh
Confidence 3444455566666666666666665542 33333344444445555 6666666655555543
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.37 E-value=1.9e+02 Score=22.84 Aligned_cols=80 Identities=14% Similarity=-0.002 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 004813 74 NDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRV 153 (729)
Q Consensus 74 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 153 (729)
-..++|..+.+|+...++. ...+--.-+..+..+|+|++|+ ..-.. ...|+...|..| +-.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEAL---LLPQC-HCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHH---HHHTT-S--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHH---Hhccc-CCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 3567777777777665431 1222223344566777777772 11111 223444444443 23466777777777
Q ss_pred HHHHHhCC
Q 004813 154 LVNMNSGG 161 (729)
Q Consensus 154 ~~~~~~~~ 161 (729)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77665544
No 438
>PRK09857 putative transposase; Provisional
Probab=39.11 E-value=2.5e+02 Score=27.30 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=39.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
.++.-....++.++..++++.+.+. .+......-+++.-+...|.-+++.++..+|+..|+.++.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3443334455555566666655554 3333444446666677777767788888888888877653
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.73 E-value=1e+02 Score=26.07 Aligned_cols=43 Identities=16% Similarity=-0.096 Sum_probs=18.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 004813 411 NIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 411 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 453 (729)
..++..+.+.++.-.|.++++.+.+.++..+..|....+..+.
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 3444444444444445555555554444444444333333333
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.59 E-value=1.6e+02 Score=28.25 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004813 427 YELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 427 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (729)
.++++.|...+++|.-..+..+.-.+.+.=...+++.+|+.+.. |+.-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 46888888888999988888877777888888889999998875 4444666666665
No 441
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.51 E-value=7.1e+02 Score=29.16 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 004813 514 SFNILIYGLCVMR--KVDKAIRLRSLAYSS 541 (729)
Q Consensus 514 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~ 541 (729)
-...++.+|.+.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445555666555 566666666665543
No 442
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=38.20 E-value=6.7e+02 Score=28.75 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=17.3
Q ss_pred HhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcC
Q 004813 627 LADGSQLHLVSSGINKLVSD-SEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 666 (729)
+...|++-.+.+++.++.+. +..++...|..++..+...|
T Consensus 1241 a~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1241 AKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 33444444455544444442 33334444444444444444
No 443
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.07 E-value=3.6e+02 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.076 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
-|+.....+...|.+.|++.+|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 366677777788888888777776553
No 444
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.48 E-value=5.4e+02 Score=27.49 Aligned_cols=220 Identities=11% Similarity=-0.024 Sum_probs=100.6
Q ss_pred hcCCHHHHHHHHHHHHhCC--------CCCCHHHHHH---HHHHHHccCCHHHHHHHHHHH-------HHCCCCCCHH--
Q 004813 454 KLCNYEDALRVFRQVSAQS--------LVLDSISYSK---LVEGLCQVEKITEAVEVFCCM-------SKNGCSLSSS-- 513 (729)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~-- 513 (729)
....++++...|....... +..++++... +...+...|+.+.|..++++. ....+.|..-
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3455778887777665431 1123333333 344566677766655554443 3333333211
Q ss_pred -----------HHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHHHc--
Q 004813 514 -----------SFN---ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV-KLQRAKDLLVVLAQMLVE-- 576 (729)
Q Consensus 514 -----------~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~-- 576 (729)
.|. .-+....+.|-+..|.++.+.+.+....-|+.....+|+.|+ +..++.--+++++.....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 111 113334456666666666666666554445555555666553 445566566665555332
Q ss_pred -CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCC
Q 004813 577 -GCALDVEAYCILIQSMSEQNK---LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLD 651 (729)
Q Consensus 577 -~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 651 (729)
..-||..--..+...|..... -+.|...+.++... .|. +.+-|+..+.-.. .|...--++... -..+.
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~--~P~--vl~eLld~~~l~~---da~~~~~k~~~~~a~~~e 482 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH--HPL--VLSELLDELLLGD---DALTKDLKFDGSSAENSE 482 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh--CcH--HHHHHHHhccCCc---hhhhhhhccccccccccc
Confidence 122332222233333433332 33444455554442 222 2333443332221 111111111111 11123
Q ss_pred HHhHHHHHHHHHhcCCh----hHHHHHHHHHHh
Q 004813 652 SSMYNILINGLWKEGLT----SQASYLLDLMLG 680 (729)
Q Consensus 652 ~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~ 680 (729)
...+..++..|....+. -+++.+++....
T Consensus 483 ~pal~~lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 483 LPALMLLVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred chHHHHHHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 45678888888866532 345555555443
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.17 E-value=2.3e+02 Score=23.21 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
.+.++|..|...|+--. ...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66667777766654433 45566666666667777777776654
No 446
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.79 E-value=6.7e+02 Score=28.40 Aligned_cols=305 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHH
Q 004813 346 VDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRK 425 (729)
Q Consensus 346 ~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 425 (729)
+.+=+.|...|+++.|.++-...+..-..++..-.+.|...+++..|.+++.+ ...++..+.--|....+.+
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~-------t~~~FEEVaLKFl~~~~~~- 433 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAE-------TLSSFEEVALKFLEINQER- 433 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------hhhhHHHHHHHHHhcCCHH-
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHh------hcCCHH----HHHHHHHHHHhC---------CCCCCHHHHHHHHHH
Q 004813 426 AYELLGRMVVSSVVPDCATYSAFVLGKC------KLCNYE----DALRVFRQVSAQ---------SLVLDSISYSKLVEG 486 (729)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~~~~~----~a~~~~~~~~~~---------~~~~~~~~~~~l~~~ 486 (729)
++..|-.=+-..++|...+-..++..+. +.++.+ ++.+-++.-.+. ....+...+.+..+.
T Consensus 434 ~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l 513 (911)
T KOG2034|consen 434 ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQL 513 (911)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHH
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDL 566 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 566 (729)
+...|+.+....+-.-+.. |..++.-+.+.+.+++|++++.. ..++..+-.+.-.+.. ...
T Consensus 514 ~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~------~~~~el~yk~ap~Li~----~~p 574 (911)
T KOG2034|consen 514 LASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN------QRNPELFYKYAPELIT----HSP 574 (911)
T ss_pred HHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHhhhHHHh----cCc
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQ---NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKL 643 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (729)
.+........+-..+......++..+... .....+..+.+-....-..-+...+|.++..|++..+-+.-..+-...
T Consensus 575 ~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~ 654 (911)
T KOG2034|consen 575 KETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIK 654 (911)
T ss_pred HHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHh
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 644 VSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 644 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
...+. ...-....++.|.+.+....++.++-.|.
T Consensus 655 ~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 655 FMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred hcccc--ceecHHHHHHHHHHhCccceeeeHHHHHH
No 447
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.42 E-value=3e+02 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=11.9
Q ss_pred CCHHhHHHHHHHHHhcCChhHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
.|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 35555555555555555544433
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.10 E-value=4e+02 Score=25.53 Aligned_cols=144 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHcC--------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 534 LRSLAYSSG--------TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE-GCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 534 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
+|+-+.+.| +.-|...+|.|+. -+..++++--+-+++..+. |-.--...|..+...|++.++.+.+.+.
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhc-CChhHHHHHHHH
Q 004813 605 FNVMVKA----GLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDSSMYNILINGLWKE-GLTSQASYLLDL 677 (729)
Q Consensus 605 ~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 677 (729)
.++..+. |.+.| ..+-.-+.-.|....-+++-++..+.+.++ |--....-|...-..++-. .++++|-.++-+
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HH
Q 004813 678 ML 679 (729)
Q Consensus 678 ~~ 679 (729)
.+
T Consensus 218 ~l 219 (412)
T COG5187 218 IL 219 (412)
T ss_pred Hh
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.03 E-value=5.8e+02 Score=28.24 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=20.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 659 INGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
..+-.-++++.+|.+.-+.|.+. +|...-
T Consensus 373 ~~asVLAnd~~kaiqAae~mfKL--k~P~WY 401 (1226)
T KOG4279|consen 373 FEASVLANDYQKAIQAAEMMFKL--KPPVWY 401 (1226)
T ss_pred hhhhhhccCHHHHHHHHHHHhcc--CCceeh
Confidence 34445678899999999999874 454433
No 450
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.51 E-value=4.4e+02 Score=25.83 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHH----
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAY----SSGTSYTTSTYTKIMLG-LVKLQRAKDLLVVLAQMLVEGCALDVE---- 583 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~---- 583 (729)
..+.....-||+.|+.+.|.+.+.+.. ..|.+.|+..+..-+.. |....-..+-++..+.+.+.|...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 345566677888888888877765543 44566666555443332 333333455556666666666654432
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
+|..+- +....++.+|-.+|-+.+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 333222 23456777887777776654
No 451
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.43 E-value=5e+02 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 563 AKDLLVVLAQMLV-EGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 563 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.++....+....+ .|+..+......+++.. .|++..|+.+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 3455555555544 47776776666665543 58888888888877653
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.30 E-value=5.2e+02 Score=26.69 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 004813 596 NKLKDCALFFNVMVKAGLVPD 616 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~ 616 (729)
++.+.|+.++..|++.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444444444
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.26 E-value=4.9e+02 Score=26.39 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---------CCC
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNSGG--FKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA---------GIV 199 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---------g~~ 199 (729)
...+.-+...|...|+++.|.+.|.+.+..- .+.....|..+|..-.-. |+|..+..+..+.... .++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~-~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYM-GNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhh-cchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 4567778888999999999999999875542 122344455566665666 7787777766666543 123
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 200 PNVDTLNYLLEVLFETNRIESALDQFRR 227 (729)
Q Consensus 200 ~~~~~~~~li~~~~~~~~~~~A~~~~~~ 227 (729)
+....+..|..... ++++.|.+.|-.
T Consensus 229 ~kl~C~agLa~L~l--kkyk~aa~~fL~ 254 (466)
T KOG0686|consen 229 AKLKCAAGLANLLL--KKYKSAAKYFLL 254 (466)
T ss_pred cchHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 33334444443333 366666665543
No 454
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.96 E-value=2.6e+02 Score=23.00 Aligned_cols=43 Identities=14% Similarity=-0.023 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHH
Q 004813 634 HLVSSGINKLVSDSEVLDSS-MYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
++..++|..|...++-.... .|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777775544433 45667777777788888877775
No 455
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.78 E-value=5.2e+02 Score=26.53 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
...|+.-|...|++.+|.+.++++--- +-.....+.+++.+.-+.|+-..-..++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456778888899999999988876432 33456678888888888888777777777665544
No 456
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.52 E-value=2.4e+02 Score=27.78 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 634 HLVSSGINKLVSDSEVLDS----SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
+++..++..++.. .|+. ..|-++++.+...|.++.++.+|+++...|-.|-...-..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555556655554 2332 3566777777777777777777777777777776666655555554
No 457
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.28 E-value=82 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=26.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcch
Q 004813 664 KEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEI 702 (729)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 702 (729)
..|+.+.+.+++++..+.|+.|.......+..+..+-|.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 457777788888888877777777776667666655544
No 458
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.26 E-value=4.4e+02 Score=26.14 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 563 AKDLLVVLAQMLVEGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 563 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+++..++.++++. .|+. .-|.++++.....|.++.++.+|++++..|-.|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666666654 3443 4567777777778888888888888888887777666666655544
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.23 E-value=3.4e+02 Score=24.21 Aligned_cols=55 Identities=4% Similarity=-0.058 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGL--------------VPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
+++..|-+.-++.++.++++.|.+..+ .+.-...|.....+.+.|.++.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345566677777888888877765321 2222334444455555555555555554
No 460
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=4.3e+02 Score=25.28 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=105.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHH----hCCCcccHHhHHH
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVR-------EALISLVFSFVNHYRVNGAMRVLVNMN----SGGFKLSVDVFNV 171 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ 171 (729)
.+-..+.+++++|+..+.++...|+..+. .+...+...|.+.|++..-.+...... ...-+........
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34455666677777777776666554433 344456667777776665544443332 1111222333444
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHH
Q 004813 172 VLGAIVEEKRGFADFVFVYKEMVKAGIVPN-----VDTLNYLLEVLFETNRIESALDQFRRM----HKKGCCPNSRTFEI 242 (729)
Q Consensus 172 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~ 242 (729)
++..+-.....++..+.+.....+-...-+ ...-.-++..+.+.|.+.+|+.+...+ ++-.-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 554444443556666666555543211111 111234678888999999998776554 33344565554443
Q ss_pred H-HHHHHhcCChhHHHHHHHHHHHC----CCCCCHHhHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 004813 243 V-IKGLIANSRVDDSVSILGEMFDL----GIQLELSFYTCIIPML--CRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 243 l-i~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 300 (729)
+ -++|...+++.++..-+...... -++|....---|+.+. |...++..|..+|-+..+
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 3 24555666666665555544421 2344444444455443 344567777777766654
No 461
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.82 E-value=1.1e+02 Score=27.94 Aligned_cols=52 Identities=13% Similarity=-0.052 Sum_probs=32.3
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+.++.+.|.+++.+..+. .+.....|--+...-.++|+++.|.+-|++.++
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3455666666666666655 344555666666666666666666666666665
No 462
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.70 E-value=1e+02 Score=18.11 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 004813 599 KDCALFFNVMVK 610 (729)
Q Consensus 599 ~~A~~~~~~~~~ 610 (729)
+.|..+|++.+.
T Consensus 4 dRAR~IyeR~v~ 15 (32)
T PF02184_consen 4 DRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.54 E-value=4.1e+02 Score=24.64 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=42.2
Q ss_pred HhcCChhHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVE-G-----------CALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
...|+..+|+..++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|... .+++.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FR 280 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFR 280 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHH
Confidence 4556666666655544321 1 1356666666666554 468899999999988888887543 344444
Q ss_pred HH
Q 004813 626 GL 627 (729)
Q Consensus 626 ~~ 627 (729)
.+
T Consensus 281 v~ 282 (333)
T KOG0991|consen 281 VV 282 (333)
T ss_pred HH
Confidence 43
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.49 E-value=4.2e+02 Score=24.75 Aligned_cols=18 Identities=0% Similarity=-0.234 Sum_probs=9.2
Q ss_pred ccCChHHHHHHHHHHHhC
Q 004813 629 DGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~ 646 (729)
..|+.++|.++.+...+.
T Consensus 181 i~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 181 ILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp TSS-HHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHH
Confidence 356666665555555443
No 465
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.48 E-value=1.7e+02 Score=20.32 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.8
Q ss_pred HhcCChhHHHHHHHHHH
Q 004813 107 GLAGNVEEMEGLCQNMV 123 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~ 123 (729)
...|++-+|-++++.+-
T Consensus 10 ~n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELW 26 (62)
T ss_dssp HHTT-HHHHHHHHHHHC
T ss_pred HcCCCHHHhHHHHHHHH
Confidence 34455555555555544
No 466
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.72 E-value=4.3e+02 Score=24.58 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=47.0
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhc-CCHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCEN-EEIRKAYELLGR 432 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 432 (729)
+..+.++|.+.+ ..-|..|...|++..|-+....+.+ .|-.. .++++|+..|+.
T Consensus 85 kk~~~~eAv~cL-----------~~aieIyt~~Grf~~aAk~~~~iaE--------------iyEsdl~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 85 KKVDPEEAVNCL-----------EKAIEIYTDMGRFTMAAKHHIEIAE--------------IYESDLQDFEKAIAHYEQ 139 (288)
T ss_pred hccChHHHHHHH-----------HHHHHHHHhhhHHHHHHhhhhhHHH--------------HHhhhHHHHHHHHHHHHH
Confidence 344666666665 4456667777776665544332221 11111 234445544444
Q ss_pred HHHC--C---CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 004813 433 MVVS--S---VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV 474 (729)
Q Consensus 433 ~~~~--~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 474 (729)
.-+- | .......+..+..--...+++.+|+++|+++......
T Consensus 140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3221 1 1111122223333334567778888888877765443
No 467
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.51 E-value=5.1e+02 Score=25.50 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE---GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR-ETMLSLL 624 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 624 (729)
.|..=.+-|.+.+++..|...|.+-++. +...+.+.|+.-..+-...|++..|+.=....+. +.|+. ..|.-=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 4445555666777777777777766654 2223445565555555566677666666555554 34442 1222222
Q ss_pred HHHhccCChHHHHHHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKL 643 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~ 643 (729)
.++....+..+|....++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3333444444454444443
No 468
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.22 E-value=6.5e+02 Score=26.57 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 650 (729)
+...+..++.+....+....|+.++.++.+.|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 44444555555554444556666666666665433
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.14 E-value=3.3e+02 Score=29.41 Aligned_cols=75 Identities=9% Similarity=0.108 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHhHHHH
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKK--GCCPNSRTFEIVIKGLIANSRVD------DSVSILGEMFDLGIQLELSFYTCI 278 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 278 (729)
+|..+|...|++..+.++++..... |-+.-...||..|+...+.|.++ .+.+.+++. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7889999999999999999988764 33334567888888888888764 333444333 355677778777
Q ss_pred HHHHHh
Q 004813 279 IPMLCR 284 (729)
Q Consensus 279 i~~~~~ 284 (729)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 765443
No 470
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.82 E-value=9.3e+02 Score=28.24 Aligned_cols=51 Identities=10% Similarity=0.315 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHC
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS--RVDDSVSILGEMFDL 266 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 266 (729)
.++++...+.+....+.. .-...-...++.+|++.+ +++.|+....++.+.
T Consensus 791 ~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 791 ESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344455555554444321 112333456777777777 778888888877764
No 471
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=30.39 E-value=6.6e+02 Score=28.40 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-------------CCCCHHhHHHHHHHHHh
Q 004813 599 KDCALFFNVMVKA-GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-------------EVLDSSMYNILINGLWK 664 (729)
Q Consensus 599 ~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~ 664 (729)
++..+.++++.+. |+..+......+.... .|++..|+.++++....+ -..+...+..++..+..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 665 EGLTSQASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
|+..+++++++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 472
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.57 E-value=4.5e+02 Score=24.13 Aligned_cols=48 Identities=6% Similarity=0.061 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 599 KDCALFFNVMVKAGLVP----DR-ETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..|.+.|.+..+..-.| +. .....+.....+.|+.++|.+.|.++...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555555555442111 11 22233444566777777777777777766
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.56 E-value=6.2e+02 Score=25.76 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=52.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCCCHHHH
Q 004813 65 HLIRVLDNTNDLSSALKIFKWVSIQ-KRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE---------RYPNVREAL 134 (729)
Q Consensus 65 ~~~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~ 134 (729)
.+...+..+|+++.|++.+.++..- ....+....+-.++.+-.-.|+|..+.....+.... .+++....+
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 3455556678888888888775432 111344555666666666777887777766666544 123333444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHH
Q 004813 135 ISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 135 ~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
..+...+. +++..|...|-..
T Consensus 235 agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 235 AGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHH--HHHHHHHHHHHhC
Confidence 44444333 3666666666554
No 474
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.53 E-value=5.5e+02 Score=25.19 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=25.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
+......++....+.|+.+.-..+++..... ++......++.+++...+.+...++++....
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333444444444454444433333333331 2344444555555555555555555555544
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.29 E-value=2.2e+02 Score=26.84 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=26.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSD----S-EVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+.=+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555554321 1 1112233444555555666666555554443
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.89 E-value=1.4e+02 Score=21.08 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=9.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
+.++..++...-.++++..+.++.+
T Consensus 12 ~Ql~el~Aed~AieDtiy~L~~al~ 36 (65)
T PF09454_consen 12 NQLYELVAEDHAIEDTIYYLDRALQ 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 477
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=28.73 E-value=5.8e+02 Score=25.18 Aligned_cols=115 Identities=13% Similarity=0.039 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 563 AKDLLVVLAQMLVEGCALDVEAYCILIQSMS------EQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 563 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
++++..++++....+. |-.+.....|.++- ..-+|.....+|+-+... .|++++-.+-.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHHhH
Confidence 4555566666555543 45555555444432 122556666666666653 33332222222233333345555
Q ss_pred HHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 637 SSGINKLVSDS-EVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 637 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+.+.+-+.+.+ ..--...+..-.+.+.+.|+.++|..-|++...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 66666555542 111112233455666677777777777777765
No 478
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.17 E-value=2.1e+02 Score=19.91 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=6.0
Q ss_pred CChhHHHHHHHHHH
Q 004813 181 RGFADFVFVYKEMV 194 (729)
Q Consensus 181 ~~~~~a~~~~~~~~ 194 (729)
|++-+|.++++++=
T Consensus 13 g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 13 GDFFEAHEVLEELW 26 (62)
T ss_dssp T-HHHHHHHHHHHC
T ss_pred CCHHHhHHHHHHHH
Confidence 44444444444443
No 479
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.14 E-value=3e+02 Score=25.93 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 97 DTYCKMILKLGLAGNVEEMEGLCQNM 122 (729)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 122 (729)
.....+...|.+.|+++.|.++|+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555566666666666666555
No 480
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.36 E-value=6.9e+02 Score=25.63 Aligned_cols=134 Identities=8% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHH-
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE-GCALDVEAYCILIQSMSEQNKLKDCALFFNV-----MVKAGLVPDRE- 618 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~p~~~- 618 (729)
|...|--=--+-.+..-..+..+-.+.+.+. .-..+...-..++.++....++.+-++.... ....+......
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred ------HHHHHHHHHhccCChHHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 619 ------TMLSLLHGLADGSQLHLVSSGINKLVSD-------SEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 619 ------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+...|++..+-.||+..|+++++.+.-. -..-...++..++-+|.-.+++.+|.+.|...+
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.36 E-value=6e+02 Score=24.92 Aligned_cols=80 Identities=10% Similarity=-0.051 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 219 ESALDQFRRMHKKGC----CPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 219 ~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+......++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 345555555544211 223333344444444555544444444444331 3444455555555555555555555
Q ss_pred HHHHHhC
Q 004813 295 FKMMRAL 301 (729)
Q Consensus 295 ~~~m~~~ 301 (729)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555553
No 482
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.06 E-value=5.2e+02 Score=24.13 Aligned_cols=39 Identities=13% Similarity=-0.000 Sum_probs=15.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH
Q 004813 137 LVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA 175 (729)
Q Consensus 137 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (729)
+++..-+.++++++.+.+.++...+...+..--+.+-.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsva 45 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVA 45 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 334444444555555555554444434444433333333
No 483
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.97 E-value=2.6e+02 Score=22.15 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004813 208 LLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m 228 (729)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455556666666666554
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.95 E-value=1.3e+02 Score=33.60 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
..++++.+.+.+...--|. ++|.-+.+.|-.+-|+...+.-..+ ...+...|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvGq--------aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVGQ--------AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCcccH--------HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
-.++- |..+|..|...-..+|+.+-|+..+++... |+-|--.|.-.|+.++-.++.+-..
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae----- 725 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAE----- 725 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHH-----
Q ss_pred CCHHHHHHHHhhhhhcchhhhhhhccccCCCCch-HHHHhccc
Q 004813 685 PDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSV-SDILAEGL 726 (729)
Q Consensus 685 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 726 (729)
....+...+..++...+..++...+...-.-+-. ......||
T Consensus 726 ~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~ 768 (1202)
T KOG0292|consen 726 IRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGL 768 (1202)
T ss_pred hhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCc
No 485
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.55 E-value=3.8e+02 Score=22.39 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHhcCC---hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 548 STYTKIMLGLVKLQR---AKDLLVVLAQMLV-EGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+--.+..++.+..+ ..+.+.+++++.+ ..+.-.....-.|.-++.+.+++++++++.+.+.+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333334444444432 3344555555554 11111222222334455566666666666666655
No 486
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.51 E-value=1.1e+03 Score=27.84 Aligned_cols=185 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.+..+|...|...+|++.|.+... |+.-+...........-....+.+....-.+.. -..-|...++.+-..+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S-g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t------~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS-GFGEGNALRKLVYFLLPKRFSVADGKTPSEELT------ALHYYLKVVRLLEEHN 997 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh-ccccHHHHHHHHHHhcCCCCchhcCCCCCchHH------HHHHHHHHHHHHHHhc
Q ss_pred ChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH----
Q 004813 562 RAKDLLVVLAQMLVE---GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLH---- 634 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---- 634 (729)
..+.+.++-...++. ..+--..+++++.+.....|.+-+|...+-.--. ..-.......++-.+..+|.++
T Consensus 998 ~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred cHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhh
Q ss_pred --------HHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 635 --------LVSS-GINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 635 --------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
+... +++.............|+.|-..+...++|.+|-.+.
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
No 487
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=25.83 E-value=8.4e+02 Score=26.07 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 77 SSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE 125 (729)
Q Consensus 77 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 125 (729)
+.....++.+..+.+...+..++..+. ....|...+++.+++.+...
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHc
Confidence 344445555555555555555554443 23345555566666555544
No 488
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=5.6e+02 Score=24.00 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=29.0
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHK 230 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 230 (729)
..+... |++-++++.-.++.... +.|+.+|-.-..+.+..-+..+|..=|....+
T Consensus 238 QC~L~~-~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKK-EEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhH-HHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 333344 55555555555555442 33555555555555555555666655555554
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.57 E-value=2.2e+02 Score=24.85 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
++..+...++.-.|.++++.+.+.+...+..|....|..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333333333444444544444444444444333344444333
No 490
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.56 E-value=1.4e+02 Score=21.84 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=8.5
Q ss_pred ccCChHHHHHHHHHHHh
Q 004813 629 DGSQLHLVSSGINKLVS 645 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (729)
..|++++|++++....+
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34555555555554444
No 491
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.49 E-value=1.6e+02 Score=17.71 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 004813 654 MYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
-|..++-.+...|++++|..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35567778889999999999954
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.39 E-value=3.2e+02 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=10.4
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCM 503 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~ 503 (729)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555554
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.11 E-value=4.1e+02 Score=23.19 Aligned_cols=37 Identities=3% Similarity=-0.126 Sum_probs=15.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 109 AGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHY 145 (729)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 145 (729)
.++.-.|.++++.+.+.+...+..+....+..+.+.|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334444444444444443333333333333443333
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.01 E-value=6.6e+02 Score=24.58 Aligned_cols=79 Identities=13% Similarity=-0.039 Sum_probs=42.7
Q ss_pred HHHHHHHHHC-CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH---hcCChhHHHHHHH
Q 004813 602 ALFFNVMVKA-GLVPDR-ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLW---KEGLTSQASYLLD 676 (729)
Q Consensus 602 ~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~ 676 (729)
...++.+.+. ++.|+. .+...+..-...+|++..|-.++-.....-.+++....+.+-.-++ -..+|+.|.+-+.
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444443 566653 3444444555567777777776666555433444433333322222 2357888887777
Q ss_pred HHHh
Q 004813 677 LMLG 680 (729)
Q Consensus 677 ~~~~ 680 (729)
++++
T Consensus 192 rLre 195 (432)
T KOG2758|consen 192 RLRE 195 (432)
T ss_pred HHHH
Confidence 7665
No 495
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.48 E-value=2.4e+02 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=27.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcc
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE 701 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 701 (729)
++++-+.++...++|+++++=|.++| ..+....+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Confidence 45666667777777777777777766 555555555555554443
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.42 E-value=1.9e+02 Score=20.44 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=15.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALD 302 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 302 (729)
+...++.++..+++..-+++++..+++..+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444445555555444555555555555444
No 497
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=6e+02 Score=23.84 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=45.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+..+..++...|++-++++.-.+.... .+.+...|.--+.+.+..=+..+|.+=|...++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3444556667788888888888888877 566777787777777777777888888888876
No 498
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=24.09 E-value=8.3e+02 Score=25.41 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=19.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSM--YNILINGLWK 664 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 664 (729)
+..++..|+++++++.+.+-+..+++ ..+.+.++.+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 34566777777777776644444333 3344444443
No 499
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.05 E-value=8.4e+02 Score=26.07 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC----------------CCCCHHhHHHHH
Q 004813 597 KLKDCALFFNVMVKA-GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS----------------EVLDSSMYNILI 659 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~l~ 659 (729)
..++..+.+....+. |+..+......++. ...|+...|...++++...+ ...+......|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 660 NGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
++... |+.++|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 500
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.00 E-value=9.1e+02 Score=25.84 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSDSEV 649 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (729)
......++.++ ..++.++|+.+++++...|..
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC
Confidence 33444555555 457888888888888887643
Done!