Query 004813
Match_columns 729
No_of_seqs 749 out of 3733
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 06:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.8E-40 1.6E-44 359.1 41.8 522 106-697 63-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-39 4.8E-44 355.4 41.9 521 72-662 65-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-26 1E-30 235.2 48.3 378 247-666 9-387 (388)
4 4g26_A Pentatricopeptide repea 100.0 3.4E-29 1.2E-33 259.9 25.0 203 150-353 9-221 (501)
5 4g26_A Pentatricopeptide repea 100.0 4E-29 1.4E-33 259.4 24.7 185 515-699 29-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4E-26 1.4E-30 234.2 46.6 378 278-697 5-383 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-23 3.7E-28 225.2 38.2 456 203-691 7-486 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.4E-22 4.7E-27 216.6 42.1 439 97-576 7-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.9E-22 1.3E-26 209.1 38.7 391 256-711 11-449 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.9E-26 210.0 39.5 438 201-681 24-491 (537)
11 3fp2_A TPR repeat-containing p 99.9 3.7E-21 1.3E-25 206.7 40.6 444 165-646 24-491 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 6.2E-21 2.1E-25 199.9 40.5 385 219-671 9-444 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 2.3E-16 7.9E-21 172.9 58.7 219 215-469 1089-1307(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 1.8E-18 6E-23 175.1 37.3 313 377-698 7-351 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 1.1E-15 3.7E-20 167.7 59.8 437 63-567 927-1375(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 7.8E-18 2.7E-22 170.3 38.3 330 272-664 3-352 (359)
17 2xm6_A Protein corresponding t 99.8 6.5E-16 2.2E-20 163.0 50.7 127 201-336 38-180 (490)
18 3hym_B Cell division cycle pro 99.8 6.9E-18 2.3E-22 168.6 32.1 291 406-704 21-322 (330)
19 2xm6_A Protein corresponding t 99.8 1.1E-15 3.9E-20 161.1 50.2 336 181-576 57-432 (490)
20 3hym_B Cell division cycle pro 99.8 1.4E-17 4.9E-22 166.2 33.2 291 373-669 22-322 (330)
21 2ooe_A Cleavage stimulation fa 99.8 3.2E-16 1.1E-20 167.1 44.9 134 93-230 10-158 (530)
22 2ooe_A Cleavage stimulation fa 99.8 3.9E-16 1.3E-20 166.4 44.8 420 236-681 12-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 2.4E-17 8.1E-22 167.5 26.8 286 386-677 38-355 (368)
24 1fch_A Peroxisomal targeting s 99.8 8.1E-17 2.8E-21 163.5 28.2 303 250-607 38-355 (368)
25 1b89_A Protein (clathrin heavy 99.8 8.4E-17 2.9E-21 158.4 24.5 237 181-489 17-253 (449)
26 4g1t_A Interferon-induced prot 99.8 8.8E-16 3E-20 161.7 34.0 375 271-690 50-469 (472)
27 4eqf_A PEX5-related protein; a 99.8 1.2E-16 4E-21 162.1 25.2 266 406-677 64-352 (365)
28 4eqf_A PEX5-related protein; a 99.8 1.2E-16 4.2E-21 161.9 24.5 265 441-711 64-351 (365)
29 1b89_A Protein (clathrin heavy 99.8 7.9E-16 2.7E-20 151.5 28.9 290 69-428 12-303 (449)
30 3cv0_A Peroxisome targeting si 99.7 5.2E-16 1.8E-20 154.6 27.1 265 407-678 21-312 (327)
31 3cv0_A Peroxisome targeting si 99.7 4.5E-16 1.5E-20 155.1 24.5 265 376-645 24-314 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6.3E-20 146.5 27.3 256 416-689 8-270 (291)
33 4g1t_A Interferon-induced prot 99.7 4.2E-15 1.4E-19 156.5 31.7 386 201-646 50-459 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 3.9E-17 1.3E-21 173.5 13.1 130 582-711 127-260 (1134)
35 3mkr_A Coatomer subunit epsilo 99.7 6.3E-15 2.2E-19 142.7 26.7 275 381-674 7-287 (291)
36 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-17 8.2E-22 175.1 9.9 153 163-321 124-286 (1134)
37 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.6E-19 133.0 21.7 198 476-679 4-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 3.9E-14 1.3E-18 135.5 24.6 239 443-695 6-254 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 6.4E-14 2.2E-18 145.1 25.7 345 278-647 9-388 (452)
40 3uq3_A Heat shock protein STI1 99.6 8.8E-14 3E-18 133.0 23.3 225 408-646 6-236 (258)
41 3e4b_A ALGK; tetratricopeptide 99.6 2.9E-13 1E-17 140.1 28.0 374 208-645 9-420 (452)
42 1ouv_A Conserved hypothetical 99.6 3.3E-12 1.1E-16 123.1 32.2 224 441-682 5-252 (273)
43 2pl2_A Hypothetical conserved 99.6 2.7E-13 9.1E-18 125.3 23.0 199 440-644 3-212 (217)
44 2ho1_A Type 4 fimbrial biogene 99.6 5.9E-13 2E-17 126.7 25.8 212 477-694 37-249 (252)
45 4e6h_A MRNA 3'-END-processing 99.6 5.6E-11 1.9E-15 126.9 43.0 234 460-698 327-585 (679)
46 3u4t_A TPR repeat-containing p 99.6 4.4E-13 1.5E-17 129.3 24.8 238 447-691 8-258 (272)
47 2h6f_A Protein farnesyltransfe 99.6 5.2E-13 1.8E-17 133.6 25.9 246 443-698 98-364 (382)
48 3u4t_A TPR repeat-containing p 99.6 5.8E-13 2E-17 128.5 25.4 245 412-661 8-264 (272)
49 2vq2_A PILW, putative fimbrial 99.6 1.2E-12 4.3E-17 121.9 26.5 213 476-694 7-222 (225)
50 2h6f_A Protein farnesyltransfe 99.6 7.8E-13 2.7E-17 132.3 25.5 250 407-664 97-365 (382)
51 2q7f_A YRRB protein; TPR, prot 99.6 3.3E-13 1.1E-17 127.7 21.8 208 476-690 22-229 (243)
52 4e6h_A MRNA 3'-END-processing 99.5 9.7E-11 3.3E-15 125.1 41.6 151 76-230 48-222 (679)
53 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.4E-16 117.8 32.6 225 94-337 4-252 (273)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.2E-13 7.6E-18 131.6 19.1 221 420-646 18-244 (275)
55 2q7f_A YRRB protein; TPR, prot 99.5 5.8E-13 2E-17 125.9 21.2 211 442-658 23-233 (243)
56 2ho1_A Type 4 fimbrial biogene 99.5 4.3E-12 1.5E-16 120.7 26.2 200 443-646 38-238 (252)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.6E-13 1.6E-17 129.4 19.3 248 72-330 17-269 (275)
58 2vq2_A PILW, putative fimbrial 99.5 8.4E-12 2.9E-16 116.2 27.3 202 442-646 8-211 (225)
59 4a1s_A PINS, partner of inscut 99.5 8.8E-13 3E-17 135.9 18.3 271 410-681 51-372 (411)
60 3vtx_A MAMA; tetratricopeptide 99.5 9.3E-12 3.2E-16 111.7 22.2 172 511-688 4-175 (184)
61 3sf4_A G-protein-signaling mod 99.4 8.3E-13 2.8E-17 135.8 15.2 292 377-668 13-363 (406)
62 3ro2_A PINS homolog, G-protein 99.4 2.4E-12 8.3E-17 128.4 17.6 269 412-681 10-332 (338)
63 4abn_A Tetratricopeptide repea 99.4 6E-12 2.1E-16 131.2 20.5 212 458-677 84-317 (474)
64 3sf4_A G-protein-signaling mod 99.4 5.2E-12 1.8E-16 129.8 19.5 296 408-704 10-364 (406)
65 4a1s_A PINS, partner of inscut 99.4 2.9E-12 9.8E-17 132.0 16.8 270 377-646 52-372 (411)
66 2ond_A Cleavage stimulation fa 99.4 2.2E-10 7.4E-15 112.3 29.2 218 459-681 33-270 (308)
67 3vtx_A MAMA; tetratricopeptide 99.4 5.8E-11 2E-15 106.5 22.7 166 477-646 5-170 (184)
68 3ulq_A Response regulator aspa 99.4 2.5E-11 8.5E-16 123.5 21.7 231 448-680 109-367 (383)
69 3nf1_A KLC 1, kinesin light ch 99.4 4.6E-12 1.6E-16 124.8 14.5 237 443-680 28-306 (311)
70 2ond_A Cleavage stimulation fa 99.4 2.2E-10 7.5E-15 112.2 26.3 217 424-646 33-270 (308)
71 3ro2_A PINS homolog, G-protein 99.3 4.2E-11 1.4E-15 119.3 20.2 267 66-335 11-331 (338)
72 4abn_A Tetratricopeptide repea 99.3 3.8E-11 1.3E-15 125.1 19.8 215 423-643 84-318 (474)
73 3nf1_A KLC 1, kinesin light ch 99.3 3.4E-11 1.2E-15 118.5 16.6 177 130-335 26-223 (311)
74 3ulq_A Response regulator aspa 99.3 3.1E-10 1.1E-14 115.3 23.8 161 278-469 109-291 (383)
75 1hz4_A MALT regulatory protein 99.3 6.6E-10 2.3E-14 112.5 25.5 264 417-680 24-321 (373)
76 3q15_A PSP28, response regulat 99.3 3.6E-10 1.2E-14 114.5 23.2 230 448-680 107-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.3 3.6E-10 1.2E-14 101.4 20.0 165 513-681 9-173 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.3 2.3E-10 7.9E-15 123.9 21.2 164 512-680 9-173 (723)
79 4i17_A Hypothetical protein; T 99.3 4.8E-10 1.6E-14 104.5 20.8 207 475-695 5-221 (228)
80 3q15_A PSP28, response regulat 99.2 1.2E-09 4.1E-14 110.7 24.5 231 412-646 106-365 (378)
81 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.4E-14 97.1 20.9 162 480-645 11-172 (186)
82 4i17_A Hypothetical protein; T 99.2 2E-09 6.9E-14 100.2 21.8 207 440-659 5-221 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 1E-09 3.6E-14 118.8 21.5 164 477-645 9-173 (723)
84 1hz4_A MALT regulatory protein 99.2 8.9E-09 3E-13 104.1 27.1 233 102-335 20-281 (373)
85 3edt_B KLC 2, kinesin light ch 99.2 2.4E-10 8.4E-15 110.5 14.0 203 477-680 43-280 (283)
86 3mv2_B Coatomer subunit epsilo 99.1 3.8E-08 1.3E-12 92.9 23.6 178 496-680 85-281 (310)
87 1qqe_A Vesicular transport pro 99.1 8.8E-09 3E-13 99.8 19.5 129 549-679 119-267 (292)
88 3edt_B KLC 2, kinesin light ch 99.1 2.3E-09 7.9E-14 103.5 15.2 204 442-646 43-281 (283)
89 3dra_A Protein farnesyltransfe 99.0 1.5E-07 5.1E-12 90.0 26.7 223 458-686 49-291 (306)
90 1qqe_A Vesicular transport pro 99.0 7.5E-09 2.6E-13 100.3 17.6 167 444-610 39-227 (292)
91 3mv2_B Coatomer subunit epsilo 99.0 1.4E-07 4.8E-12 89.1 24.9 209 104-335 21-239 (310)
92 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.5E-13 84.3 17.2 129 549-680 3-131 (136)
93 3urz_A Uncharacterized protein 99.0 2.3E-08 7.8E-13 91.2 18.3 136 552-694 59-197 (208)
94 2uy1_A Cleavage stimulation fa 99.0 1.2E-06 4.2E-11 90.9 33.3 125 548-680 287-412 (493)
95 3qky_A Outer membrane assembly 99.0 2.7E-08 9.3E-13 94.7 19.4 211 476-709 14-254 (261)
96 3qky_A Outer membrane assembly 99.0 2.7E-08 9.1E-13 94.7 18.7 184 440-646 13-224 (261)
97 3dra_A Protein farnesyltransfe 99.0 3.1E-07 1.1E-11 87.9 25.1 233 423-660 49-301 (306)
98 2uy1_A Cleavage stimulation fa 99.0 6.3E-07 2.1E-11 93.1 29.5 125 513-645 287-412 (493)
99 3urz_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 89.5 18.2 136 518-659 60-197 (208)
100 2fo7_A Synthetic consensus TPR 98.9 5.2E-08 1.8E-12 81.6 17.7 125 482-609 6-130 (136)
101 4ga2_A E3 SUMO-protein ligase 98.9 6.2E-09 2.1E-13 89.1 11.1 142 521-667 6-149 (150)
102 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.9E-12 86.8 20.1 176 495-682 4-198 (212)
103 2pzi_A Probable serine/threoni 98.9 1.2E-08 4E-13 111.4 15.6 173 453-632 402-583 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.5E-07 5.1E-12 87.1 19.3 185 476-682 3-214 (225)
105 2pzi_A Probable serine/threoni 98.9 1.2E-07 4.1E-12 103.4 21.1 174 418-597 402-583 (681)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 6.2E-08 2.1E-12 94.6 16.6 225 420-674 4-254 (307)
107 4ga2_A E3 SUMO-protein ligase 98.8 2.5E-08 8.7E-13 85.3 11.5 142 484-631 4-148 (150)
108 3rjv_A Putative SEL1 repeat pr 98.8 4.3E-07 1.5E-11 82.9 20.1 141 426-576 5-158 (212)
109 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.7E-12 91.6 16.7 163 512-679 117-282 (287)
110 2r5s_A Uncharacterized protein 98.8 9.9E-08 3.4E-12 84.3 14.9 161 99-264 9-171 (176)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 8.8E-08 3E-12 93.5 15.5 221 455-706 4-251 (307)
112 2vsy_A XCC0866; transferase, g 98.8 1E-07 3.5E-12 102.3 17.3 164 490-658 2-168 (568)
113 2r5s_A Uncharacterized protein 98.8 8.6E-08 2.9E-12 84.7 14.0 77 601-679 93-171 (176)
114 3qou_A Protein YBBN; thioredox 98.8 5.2E-07 1.8E-11 86.9 19.6 167 93-264 114-282 (287)
115 3q7a_A Farnesyltransferase alp 98.8 4E-06 1.4E-10 80.9 25.3 222 458-685 70-334 (349)
116 2vsy_A XCC0866; transferase, g 98.7 2.1E-07 7.2E-12 99.8 18.1 154 455-612 2-158 (568)
117 2yhc_A BAMD, UPF0169 lipoprote 98.7 7.9E-07 2.7E-11 82.1 19.6 182 441-646 3-213 (225)
118 3u3w_A Transcriptional activat 98.7 3.3E-06 1.1E-10 81.7 23.2 162 519-680 82-265 (293)
119 3q7a_A Farnesyltransferase alp 98.7 6.1E-06 2.1E-10 79.6 24.3 234 422-660 69-345 (349)
120 4gco_A Protein STI-1; structur 98.7 3.8E-07 1.3E-11 75.0 13.7 105 583-691 14-118 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4E-11 80.3 18.2 92 515-611 9-100 (213)
122 2qfc_A PLCR protein; TPR, HTH, 98.6 5.8E-06 2E-10 79.9 22.5 165 516-680 79-265 (293)
123 3u3w_A Transcriptional activat 98.6 1.1E-05 3.6E-10 78.0 24.4 163 483-645 81-265 (293)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4E-06 1.4E-10 76.6 19.2 126 480-610 9-149 (213)
125 1a17_A Serine/threonine protei 98.6 1.8E-06 6.2E-11 75.2 16.1 128 549-679 15-144 (166)
126 2e2e_A Formate-dependent nitri 98.6 4.9E-07 1.7E-11 79.9 12.5 134 559-697 22-158 (177)
127 3gyz_A Chaperone protein IPGC; 98.6 1.4E-06 4.7E-11 73.9 14.5 103 582-688 36-138 (151)
128 4gco_A Protein STI-1; structur 98.6 1.6E-06 5.4E-11 71.3 14.5 95 550-646 16-110 (126)
129 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-05 4E-10 77.8 22.7 168 478-645 76-265 (293)
130 3dss_A Geranylgeranyl transfer 98.5 4.1E-05 1.4E-09 73.6 25.1 189 493-689 90-310 (331)
131 1a17_A Serine/threonine protei 98.5 3.9E-06 1.3E-10 73.0 16.8 126 480-608 16-143 (166)
132 3gw4_A Uncharacterized protein 98.5 6.6E-07 2.3E-11 81.1 12.2 132 549-680 28-175 (203)
133 2c2l_A CHIP, carboxy terminus 98.5 4.2E-07 1.4E-11 87.2 11.0 191 476-680 3-198 (281)
134 3gyz_A Chaperone protein IPGC; 98.5 3.2E-06 1.1E-10 71.7 15.1 94 515-610 39-132 (151)
135 2vgx_A Chaperone SYCD; alterna 98.5 3.4E-07 1.2E-11 77.9 8.7 97 582-680 21-117 (148)
136 1na0_A Designed protein CTPR3; 98.5 5.4E-06 1.8E-10 67.8 15.5 24 655-678 80-103 (125)
137 2lni_A Stress-induced-phosphop 98.5 3.2E-06 1.1E-10 70.3 14.0 95 549-645 18-112 (133)
138 2e2e_A Formate-dependent nitri 98.5 9.7E-07 3.3E-11 78.0 11.2 120 489-611 22-144 (177)
139 2vyi_A SGTA protein; chaperone 98.5 4.6E-06 1.6E-10 68.9 14.7 116 549-667 14-129 (131)
140 3dss_A Geranylgeranyl transfer 98.5 0.00011 3.8E-09 70.5 25.9 198 458-662 90-319 (331)
141 1na0_A Designed protein CTPR3; 98.5 7.3E-06 2.5E-10 67.0 15.8 93 480-574 12-104 (125)
142 4f3v_A ESX-1 secretion system 98.4 4.8E-06 1.6E-10 77.5 15.4 189 72-266 18-237 (282)
143 4f3v_A ESX-1 secretion system 98.4 1.5E-05 5E-10 74.3 18.6 188 108-302 18-238 (282)
144 1p5q_A FKBP52, FK506-binding p 98.4 3.8E-06 1.3E-10 82.8 15.6 96 582-679 196-292 (336)
145 2vyi_A SGTA protein; chaperone 98.4 7.4E-06 2.5E-10 67.7 15.2 94 480-575 15-108 (131)
146 3gw4_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 76.6 13.6 28 477-504 26-53 (203)
147 3upv_A Heat shock protein STI1 98.4 4.2E-06 1.4E-10 68.9 12.9 96 583-680 5-100 (126)
148 2c2l_A CHIP, carboxy terminus 98.4 1.7E-06 5.7E-11 82.9 11.7 96 96-194 4-99 (281)
149 2lni_A Stress-induced-phosphop 98.4 7.4E-06 2.5E-10 68.0 14.4 95 479-575 18-112 (133)
150 2vgx_A Chaperone SYCD; alterna 98.4 2.5E-06 8.7E-11 72.4 11.5 95 514-610 23-117 (148)
151 1p5q_A FKBP52, FK506-binding p 98.4 9.9E-06 3.4E-10 79.8 16.4 121 477-601 147-283 (336)
152 2fbn_A 70 kDa peptidylprolyl i 98.3 8.4E-07 2.9E-11 80.1 8.0 128 550-679 41-184 (198)
153 4gcn_A Protein STI-1; structur 98.3 6.3E-06 2.1E-10 67.8 11.7 104 584-691 10-120 (127)
154 3upv_A Heat shock protein STI1 98.3 1.6E-05 5.6E-10 65.2 14.3 93 516-610 8-100 (126)
155 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.5E-10 65.8 13.6 94 516-610 12-111 (127)
156 2xcb_A PCRH, regulatory protei 98.3 4.6E-06 1.6E-10 70.3 11.0 94 585-680 21-114 (142)
157 1elw_A TPR1-domain of HOP; HOP 98.3 1.6E-05 5.6E-10 64.1 13.9 98 582-681 4-101 (118)
158 1elw_A TPR1-domain of HOP; HOP 98.3 3.3E-05 1.1E-09 62.2 15.4 96 549-646 6-101 (118)
159 2fbn_A 70 kDa peptidylprolyl i 98.3 2E-06 6.8E-11 77.6 8.3 96 479-576 40-151 (198)
160 2dba_A Smooth muscle cell asso 98.3 2E-05 6.8E-10 66.8 14.2 102 581-687 27-132 (148)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 1.8E-05 6.2E-10 68.6 13.8 95 584-680 13-107 (164)
162 1elr_A TPR2A-domain of HOP; HO 98.2 1.4E-05 4.8E-10 65.9 12.3 108 584-695 6-120 (131)
163 2xcb_A PCRH, regulatory protei 98.2 1.6E-05 5.4E-10 67.0 12.3 96 549-646 20-115 (142)
164 4b4t_Q 26S proteasome regulato 98.2 4.9E-05 1.7E-09 78.2 18.5 198 449-646 11-245 (434)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 3.3E-05 1.1E-09 66.9 14.4 96 513-610 12-107 (164)
166 1hxi_A PEX5, peroxisome target 98.2 1.3E-05 4.3E-10 65.2 10.7 92 586-680 21-113 (121)
167 3q49_B STIP1 homology and U bo 98.2 3.1E-05 1.1E-09 64.6 13.5 98 581-680 8-105 (137)
168 3q49_B STIP1 homology and U bo 98.2 3E-05 1E-09 64.7 13.0 98 547-646 9-106 (137)
169 2kck_A TPR repeat; tetratricop 98.1 3.4E-05 1.2E-09 61.4 12.5 91 588-680 12-105 (112)
170 3ro3_A PINS homolog, G-protein 98.1 8.7E-06 3E-10 70.3 9.5 131 550-680 12-157 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.1 2.4E-05 8.2E-10 64.5 11.8 27 584-610 81-107 (131)
172 2kck_A TPR repeat; tetratricop 98.1 1.8E-05 6.2E-10 63.1 10.7 99 546-646 5-106 (112)
173 4b4t_Q 26S proteasome regulato 98.1 0.00015 5.3E-09 74.4 20.0 166 133-298 57-242 (434)
174 2dba_A Smooth muscle cell asso 98.1 8E-05 2.7E-09 63.0 14.9 96 548-646 29-128 (148)
175 1hxi_A PEX5, peroxisome target 98.1 3.4E-05 1.2E-09 62.6 11.6 86 522-609 27-112 (121)
176 3rkv_A Putative peptidylprolyl 98.0 3.3E-05 1.1E-09 66.8 11.2 111 584-697 13-141 (162)
177 2xev_A YBGF; tetratricopeptide 98.0 4.7E-05 1.6E-09 62.6 11.7 91 588-681 8-105 (129)
178 1dce_A Protein (RAB geranylger 98.0 0.00024 8.3E-09 74.9 19.1 174 492-670 44-244 (567)
179 1wao_1 Serine/threonine protei 98.0 2E-05 7E-10 81.6 10.4 117 557-676 16-134 (477)
180 2xev_A YBGF; tetratricopeptide 98.0 0.00015 5.3E-09 59.5 13.8 91 553-646 8-105 (129)
181 3ro3_A PINS homolog, G-protein 98.0 4E-05 1.4E-09 66.0 10.4 97 549-645 51-157 (164)
182 1wao_1 Serine/threonine protei 98.0 5.2E-05 1.8E-09 78.5 12.7 120 484-606 13-134 (477)
183 3k9i_A BH0479 protein; putativ 97.9 1E-05 3.5E-10 65.4 5.6 86 595-681 3-90 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0001 3.5E-09 76.0 14.4 96 582-679 317-413 (457)
185 2hr2_A Hypothetical protein; a 97.9 0.0001 3.5E-09 61.7 11.2 90 588-680 17-130 (159)
186 1ihg_A Cyclophilin 40; ppiase 97.9 9.3E-05 3.2E-09 73.6 12.8 87 583-671 274-360 (370)
187 3rkv_A Putative peptidylprolyl 97.9 0.00015 5.1E-09 62.5 12.4 61 549-610 65-125 (162)
188 1dce_A Protein (RAB geranylger 97.9 0.00072 2.5E-08 71.3 19.3 174 526-705 43-244 (567)
189 3k9i_A BH0479 protein; putativ 97.8 3.8E-05 1.3E-09 62.0 7.5 61 549-610 29-89 (117)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00023 7.9E-09 73.3 14.7 96 547-645 317-414 (457)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 6E-05 2.1E-09 74.2 9.9 148 512-680 179-327 (338)
192 1klx_A Cysteine rich protein B 97.8 0.00053 1.8E-08 57.0 13.9 110 562-682 10-127 (138)
193 1ihg_A Cyclophilin 40; ppiase 97.8 0.00024 8.3E-09 70.6 13.9 96 480-576 226-336 (370)
194 2hr2_A Hypothetical protein; a 97.8 0.00041 1.4E-08 58.0 12.5 25 517-541 16-40 (159)
195 3n71_A Histone lysine methyltr 97.7 0.00015 5E-09 74.6 10.4 97 584-680 353-463 (490)
196 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00013 4.4E-09 71.8 9.5 146 479-646 181-328 (338)
197 1zu2_A Mitochondrial import re 97.6 0.00012 4E-09 61.1 6.7 111 559-698 14-135 (158)
198 2l6j_A TPR repeat-containing p 97.6 6.7E-05 2.3E-09 59.7 5.2 60 620-680 7-66 (111)
199 3n71_A Histone lysine methyltr 97.6 0.0003 1E-08 72.2 11.0 86 72-157 321-419 (490)
200 2l6j_A TPR repeat-containing p 97.6 0.00058 2E-08 54.0 10.4 94 581-676 3-102 (111)
201 1klx_A Cysteine rich protein B 97.5 0.0033 1.1E-07 52.1 15.0 110 422-542 10-127 (138)
202 1zu2_A Mitochondrial import re 97.5 0.00038 1.3E-08 58.1 8.0 95 526-624 16-131 (158)
203 2kat_A Uncharacterized protein 97.4 0.00068 2.3E-08 54.2 9.4 79 600-680 3-81 (115)
204 1na3_A Designed protein CTPR2; 97.3 0.0017 5.8E-08 48.9 10.1 60 585-645 12-71 (91)
205 1na3_A Designed protein CTPR2; 97.3 0.0033 1.1E-07 47.3 11.2 23 552-574 48-70 (91)
206 3ma5_A Tetratricopeptide repea 97.3 0.00088 3E-08 51.9 7.7 63 617-680 7-69 (100)
207 2kat_A Uncharacterized protein 97.3 0.0026 9.1E-08 50.6 10.9 79 78-159 3-81 (115)
208 3ma5_A Tetratricopeptide repea 97.1 0.0019 6.4E-08 50.0 8.2 61 548-609 8-68 (100)
209 3ly7_A Transcriptional activat 97.0 0.011 3.7E-07 57.0 14.1 75 614-692 274-348 (372)
210 1pc2_A Mitochondria fission pr 96.9 0.006 2.1E-07 50.2 9.7 97 598-698 14-115 (152)
211 3qww_A SET and MYND domain-con 96.8 0.0037 1.3E-07 63.0 9.2 27 653-679 383-409 (433)
212 3qwp_A SET and MYND domain-con 96.7 0.0099 3.4E-07 60.0 11.7 90 591-680 296-399 (429)
213 3bee_A Putative YFRE protein; 96.4 0.021 7.4E-07 43.0 9.2 66 615-681 4-72 (93)
214 3qww_A SET and MYND domain-con 96.4 0.008 2.7E-07 60.5 8.6 62 132-194 341-409 (433)
215 3ly7_A Transcriptional activat 96.4 0.12 4.1E-06 49.8 16.0 66 199-266 274-339 (372)
216 1wy6_A Hypothetical protein ST 96.2 0.2 6.9E-06 39.5 13.4 138 525-684 20-157 (172)
217 3lvg_A Clathrin heavy chain 1; 96.2 7.1E-06 2.4E-10 79.9 -13.7 72 556-639 463-534 (624)
218 3qwp_A SET and MYND domain-con 96.2 0.012 4.1E-07 59.4 8.8 61 97-157 330-397 (429)
219 3mkq_A Coatomer beta'-subunit; 96.2 0.2 6.7E-06 56.0 19.7 122 181-335 613-735 (814)
220 3bee_A Putative YFRE protein; 96.2 0.07 2.4E-06 40.1 10.8 68 93-161 3-73 (93)
221 2kc7_A BFR218_protein; tetratr 96.1 0.02 6.7E-07 43.8 7.5 18 556-573 44-61 (99)
222 3mkq_B Coatomer subunit alpha; 96.0 0.51 1.7E-05 39.9 16.2 102 175-298 14-115 (177)
223 3u64_A Protein TP_0956; tetrat 96.0 0.43 1.5E-05 44.0 16.7 85 218-304 179-272 (301)
224 1nzn_A CGI-135 protein, fissio 95.9 0.063 2.1E-06 42.4 9.7 97 594-693 13-113 (126)
225 2kc7_A BFR218_protein; tetratr 95.9 0.02 6.9E-07 43.7 7.0 54 591-646 9-64 (99)
226 4ady_A RPN2, 26S proteasome re 95.9 2.7 9.2E-05 46.1 40.0 268 416-696 383-670 (963)
227 3mkq_A Coatomer beta'-subunit; 95.8 0.46 1.6E-05 52.9 20.6 153 106-298 609-762 (814)
228 2v5f_A Prolyl 4-hydroxylase su 95.8 0.043 1.5E-06 42.5 8.3 68 619-688 7-80 (104)
229 3mkq_B Coatomer subunit alpha; 95.7 0.28 9.5E-06 41.5 13.4 102 211-333 14-115 (177)
230 1pc2_A Mitochondria fission pr 95.6 0.075 2.6E-06 43.7 9.4 22 589-610 78-99 (152)
231 3lvg_A Clathrin heavy chain 1; 95.4 0.0018 6.1E-08 63.6 -1.1 224 201-455 53-276 (624)
232 3u64_A Protein TP_0956; tetrat 95.2 0.11 3.9E-06 47.8 10.0 79 564-646 180-269 (301)
233 2v5f_A Prolyl 4-hydroxylase su 94.8 0.33 1.1E-05 37.3 10.6 26 550-575 49-74 (104)
234 4h7y_A Dual specificity protei 94.5 0.45 1.6E-05 38.5 10.5 50 596-646 74-123 (161)
235 4h7y_A Dual specificity protei 94.5 0.2 6.8E-06 40.6 8.4 114 581-697 12-138 (161)
236 1wy6_A Hypothetical protein ST 93.7 2.1 7.3E-05 33.9 15.5 63 515-578 94-156 (172)
237 3o48_A Mitochondria fission 1 93.5 0.85 2.9E-05 36.1 10.2 83 612-696 35-120 (134)
238 1nzn_A CGI-135 protein, fissio 93.4 0.34 1.2E-05 38.2 7.8 21 590-610 82-102 (126)
239 1y8m_A FIS1; mitochondria, unk 93.2 2.2 7.7E-05 34.3 12.3 81 614-696 36-119 (144)
240 2ff4_A Probable regulatory pro 92.4 1.4 4.9E-05 43.5 12.9 71 620-691 174-249 (388)
241 4gns_B Protein CSD3, chitin bi 92.3 0.46 1.6E-05 50.9 9.6 54 625-679 345-398 (754)
242 4b4t_P 26S proteasome regulato 91.9 8.3 0.00028 38.8 18.0 189 420-609 29-245 (445)
243 4ady_A RPN2, 26S proteasome re 91.7 18 0.00063 39.7 45.4 154 452-609 500-656 (963)
244 1qsa_A Protein (soluble lytic 91.6 15 0.00052 38.6 29.0 376 67-477 79-485 (618)
245 4b4t_P 26S proteasome regulato 91.2 14 0.00046 37.2 23.3 326 74-437 30-387 (445)
246 2ff4_A Probable regulatory pro 89.1 4.1 0.00014 40.2 12.6 71 133-205 173-248 (388)
247 4gns_B Protein CSD3, chitin bi 88.9 2.5 8.6E-05 45.4 11.4 49 651-701 612-660 (754)
248 1v54_E Cytochrome C oxidase po 88.5 5.3 0.00018 29.7 9.3 48 599-646 27-74 (109)
249 1v54_E Cytochrome C oxidase po 88.5 4.7 0.00016 30.0 9.0 64 632-696 25-88 (109)
250 4fhn_B Nucleoporin NUP120; pro 87.5 12 0.00041 43.2 16.8 89 166-257 899-991 (1139)
251 3ffl_A Anaphase-promoting comp 87.5 4.2 0.00014 33.7 9.4 27 584-610 65-91 (167)
252 4fhn_B Nucleoporin NUP120; pro 87.3 13 0.00046 42.8 17.1 156 550-707 902-1086(1139)
253 3ffl_A Anaphase-promoting comp 86.7 3.8 0.00013 34.0 8.7 104 577-680 13-150 (167)
254 3lpz_A GET4 (YOR164C homolog); 86.4 23 0.00078 33.6 23.1 110 377-500 39-159 (336)
255 2wpv_A GET4, UPF0363 protein Y 84.5 27 0.00092 32.8 22.4 111 377-501 37-158 (312)
256 3o48_A Mitochondria fission 1 84.3 9.7 0.00033 30.2 9.5 66 545-610 38-106 (134)
257 2y69_E Cytochrome C oxidase su 84.0 9 0.00031 30.3 9.0 59 600-659 71-129 (152)
258 2y69_E Cytochrome C oxidase su 84.0 10 0.00035 29.9 9.3 65 632-697 68-132 (152)
259 1y8m_A FIS1; mitochondria, unk 83.0 17 0.00058 29.3 11.8 66 545-610 37-105 (144)
260 1qsa_A Protein (soluble lytic 82.9 50 0.0017 34.7 33.5 95 76-179 55-149 (618)
261 1zbp_A Hypothetical protein VP 79.9 7.1 0.00024 35.4 8.3 56 590-646 5-60 (273)
262 3esl_A Checkpoint serine/threo 75.4 15 0.00051 31.7 8.6 51 598-648 95-146 (202)
263 1zbp_A Hypothetical protein VP 75.3 10 0.00034 34.5 7.9 56 104-160 5-60 (273)
264 4b4t_R RPN7, 26S proteasome re 74.5 9.6 0.00033 38.2 8.7 98 549-646 133-237 (429)
265 3eiq_C Programmed cell death p 74.5 8.7 0.0003 36.9 7.9 63 377-439 221-285 (358)
266 1wdy_A 2-5A-dependent ribonucl 74.2 52 0.0018 30.0 14.1 24 318-341 190-213 (285)
267 2p58_C Putative type III secre 73.8 20 0.00067 26.6 7.5 51 626-682 49-99 (116)
268 3kea_A K1L; tropism, ANK repea 72.2 46 0.0016 30.8 12.5 62 378-443 163-224 (285)
269 4b4t_R RPN7, 26S proteasome re 71.4 35 0.0012 34.0 12.0 130 493-622 110-248 (429)
270 2uwj_G Type III export protein 70.6 19 0.00065 26.6 6.8 51 626-682 48-98 (115)
271 4a1g_A Mitotic checkpoint seri 68.8 33 0.0011 28.0 8.9 53 635-687 83-136 (152)
272 3txn_A 26S proteasome regulato 67.8 94 0.0032 30.3 23.8 26 408-433 20-45 (394)
273 1k1a_A B-cell lymphoma 3-encod 64.7 75 0.0026 28.0 12.3 17 214-230 18-34 (241)
274 3txn_A 26S proteasome regulato 63.3 1.2E+02 0.0039 29.7 23.7 25 377-401 23-47 (394)
275 3lpz_A GET4 (YOR164C homolog); 62.2 1.1E+02 0.0037 29.0 27.1 182 381-610 20-215 (336)
276 2wvi_A Mitotic checkpoint seri 61.7 42 0.0014 27.8 8.4 52 636-687 79-131 (164)
277 3ltm_A Alpha-REP4; protein eng 61.0 81 0.0028 27.2 19.2 30 305-335 155-184 (211)
278 2zu6_B Programmed cell death p 55.6 34 0.0012 32.0 7.8 25 205-229 6-30 (307)
279 2wpv_A GET4, UPF0363 protein Y 54.6 1.4E+02 0.0048 28.0 23.2 181 381-609 21-215 (312)
280 4b4t_S RPN3, 26S proteasome re 54.3 45 0.0016 33.8 8.8 66 130-196 230-299 (523)
281 2uwj_G Type III export protein 52.7 68 0.0023 23.8 8.5 13 76-88 22-34 (115)
282 3eu9_A Huntingtin-interacting 52.6 53 0.0018 28.9 8.7 18 415-432 215-232 (240)
283 2p58_C Putative type III secre 51.8 71 0.0024 23.7 10.1 13 76-88 23-35 (116)
284 3ltj_A Alpharep-4; protein eng 49.8 1.2E+02 0.0041 25.8 19.2 61 270-335 119-179 (201)
285 3hra_A Ankyrin repeat family p 49.3 1.2E+02 0.0041 25.6 11.0 14 427-440 158-171 (201)
286 3jxi_A Vanilloid receptor-rela 49.1 40 0.0014 30.4 7.4 26 246-271 11-36 (260)
287 3kea_A K1L; tropism, ANK repea 48.6 1.4E+02 0.0047 27.4 11.1 13 453-465 169-181 (285)
288 3esl_A Checkpoint serine/threo 47.9 1.3E+02 0.0046 25.8 11.7 57 560-616 92-149 (202)
289 1k1a_A B-cell lymphoma 3-encod 47.4 1.5E+02 0.005 26.0 11.8 20 248-267 17-36 (241)
290 3eiq_C Programmed cell death p 46.4 2E+02 0.007 27.5 13.3 24 377-400 58-81 (358)
291 2d2s_A Exocyst complex compone 46.4 71 0.0024 28.5 8.0 22 554-575 25-46 (235)
292 4aez_C MAD3, mitotic spindle c 44.4 59 0.002 28.6 6.8 54 634-687 131-185 (223)
293 2d2s_A Exocyst complex compone 44.0 95 0.0032 27.7 8.4 87 209-298 25-117 (235)
294 2nsz_A Programmed cell death p 43.8 1E+02 0.0034 24.3 7.7 63 377-439 11-75 (129)
295 1n11_A Ankyrin; clathrin, BAND 43.7 2.5E+02 0.0084 27.6 14.8 12 248-259 121-132 (437)
296 4b4t_S RPN3, 26S proteasome re 41.4 3E+02 0.01 27.9 13.2 65 96-160 231-299 (523)
297 2wvi_A Mitotic checkpoint seri 41.1 41 0.0014 27.9 5.1 52 391-442 78-131 (164)
298 1n11_A Ankyrin; clathrin, BAND 40.4 2.8E+02 0.0094 27.2 14.9 17 139-155 52-68 (437)
299 2pnn_A Transient receptor pote 39.3 1.2E+02 0.004 27.5 8.9 23 246-268 19-41 (273)
300 3ltm_A Alpha-REP4; protein eng 39.2 1.8E+02 0.0063 24.8 21.6 79 201-287 94-172 (211)
301 2nsz_A Programmed cell death p 38.5 1.4E+02 0.0049 23.4 8.0 22 552-573 12-33 (129)
302 4ets_A Ferric uptake regulatio 38.4 88 0.003 25.9 6.9 68 77-145 14-83 (162)
303 3ljn_A Hypothetical protein; a 37.0 2.8E+02 0.0095 26.3 11.8 15 283-297 92-106 (364)
304 2ijq_A Hypothetical protein; s 36.0 1.8E+02 0.0063 23.9 8.3 51 108-158 44-102 (161)
305 2ion_A PDCD4, programmed cell 35.5 99 0.0034 25.3 6.6 63 377-439 13-77 (152)
306 3hra_A Ankyrin repeat family p 34.8 99 0.0034 26.2 7.3 60 281-341 112-172 (201)
307 4g8k_A 2-5A-dependent ribonucl 34.0 3E+02 0.01 25.7 13.9 19 277-295 27-45 (337)
308 3ltj_A Alpharep-4; protein eng 34.0 2.1E+02 0.0073 24.1 21.8 91 200-299 88-178 (201)
309 2zu6_B Programmed cell death p 32.9 3.1E+02 0.01 25.6 10.3 69 275-344 169-239 (307)
310 2ion_A PDCD4, programmed cell 31.9 1.2E+02 0.0042 24.7 6.6 22 552-573 14-35 (152)
311 3b7b_A Euchromatic histone-lys 31.6 2.6E+02 0.0088 24.3 11.1 16 454-469 219-234 (237)
312 4aez_C MAD3, mitotic spindle c 31.6 57 0.002 28.6 4.7 51 390-440 131-183 (223)
313 2r9g_A AAA ATPase, central reg 31.3 2.5E+02 0.0086 24.1 9.7 34 595-629 27-60 (204)
314 3eu9_A Huntingtin-interacting 30.2 2.7E+02 0.0092 24.1 13.0 14 453-466 218-231 (240)
315 1ug3_A EIF4GI, eukaryotic prot 29.6 1.1E+02 0.0037 29.2 6.9 25 205-229 14-38 (339)
316 3eyy_A Putative iron uptake re 28.3 1.9E+02 0.0064 23.3 7.2 41 104-145 26-66 (145)
317 2qx5_A Nucleoporin NIC96; mRNA 28.3 5.5E+02 0.019 27.1 15.8 20 413-432 300-319 (661)
318 4gq2_M Nucleoporin NUP120; bet 27.7 4.3E+02 0.015 29.5 12.3 48 168-216 899-950 (950)
319 2etb_A Transient receptor pote 27.5 3.1E+02 0.011 24.2 9.7 26 245-270 7-32 (256)
320 1wty_A Hypothetical protein TT 27.5 2.1E+02 0.0072 22.0 7.2 17 652-668 53-69 (119)
321 2qx5_A Nucleoporin NIC96; mRNA 27.1 5.8E+02 0.02 26.9 19.9 83 207-300 299-384 (661)
322 2fe3_A Peroxide operon regulat 27.1 1.3E+02 0.0044 24.2 6.0 35 457-491 36-70 (145)
323 3mv2_A Coatomer subunit alpha; 26.9 4E+02 0.014 25.0 11.1 78 634-711 187-267 (325)
324 3t8k_A Uncharacterized protein 26.9 2.8E+02 0.0096 23.2 9.3 63 379-441 41-108 (186)
325 3aji_A 26S proteasome non-ATPa 26.8 3.1E+02 0.01 23.6 11.3 15 247-261 13-27 (231)
326 3pvs_A Replication-associated 26.7 4.8E+02 0.016 25.9 12.8 157 492-665 166-343 (447)
327 3t8k_A Uncharacterized protein 26.7 2.8E+02 0.0097 23.2 9.2 98 209-306 42-148 (186)
328 3jxi_A Vanilloid receptor-rela 26.5 3.4E+02 0.011 24.0 10.3 56 209-264 9-73 (260)
329 3bge_A Predicted ATPase; struc 25.8 3.1E+02 0.011 23.4 8.8 20 561-580 21-40 (201)
330 2fe3_A Peroxide operon regulat 25.0 2.7E+02 0.0091 22.3 7.9 42 104-145 29-70 (145)
331 2xig_A Ferric uptake regulatio 24.6 1.2E+02 0.0042 24.6 5.5 34 458-491 42-75 (150)
332 2r9g_A AAA ATPase, central reg 23.8 3.5E+02 0.012 23.2 9.7 17 216-232 28-44 (204)
333 3pvs_A Replication-associated 23.3 5.5E+02 0.019 25.4 13.6 22 285-306 268-289 (447)
334 3aji_A 26S proteasome non-ATPa 23.1 3.6E+02 0.012 23.1 12.5 50 208-258 9-58 (231)
335 3eyy_A Putative iron uptake re 23.0 1.1E+02 0.0038 24.7 4.9 27 425-451 35-61 (145)
336 1mzb_A Ferric uptake regulatio 22.9 1.3E+02 0.0043 24.0 5.1 31 459-489 35-65 (136)
337 2xig_A Ferric uptake regulatio 22.5 3.1E+02 0.01 22.1 8.1 60 296-356 16-75 (150)
338 1mzb_A Ferric uptake regulatio 21.9 2.9E+02 0.01 21.7 7.2 20 183-202 34-53 (136)
339 2w57_A Ferric uptake regulatio 21.6 1.4E+02 0.0046 24.3 5.1 33 459-491 34-66 (150)
340 3ljn_A Hypothetical protein; a 20.9 5.3E+02 0.018 24.3 11.9 96 164-270 16-114 (364)
341 3ctd_A Putative ATPase, AAA fa 20.8 4.1E+02 0.014 23.0 9.3 20 561-580 49-68 (213)
342 2rfa_A Transient receptor pote 20.6 4.1E+02 0.014 22.8 11.3 16 382-397 43-58 (232)
343 4ets_A Ferric uptake regulatio 20.5 2.1E+02 0.0073 23.5 6.2 67 289-356 14-83 (162)
344 1bd8_A P19INK4D CDK4/6 inhibit 20.2 3.2E+02 0.011 21.5 7.9 19 279-297 6-24 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-40 Score=359.13 Aligned_cols=522 Identities=11% Similarity=-0.028 Sum_probs=385.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhH
Q 004813 106 LGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFAD 185 (729)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 185 (729)
..+.|.+..+...+..+ ..++...|+.++..|.+.|++++|..+|+++.. ..|+..++..+..++.+. |++++
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~-g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT-GDYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT-TCHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc-CcHHH
Confidence 34455555555554433 235677788888888888888888888888874 356777788888888888 88888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 186 FVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 186 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 265 (729)
|..+|+++... +++..+++.++.+|.+.|++++|.++|+++. |+.. ...++.+.++. .
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------D 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-----------C
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-----------c
Confidence 88888877543 5677888888888888888888888887522 1110 01111111111 2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH--HH-HHHHHHcCCCCCH
Q 004813 266 LGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDAN--DI-LEDMIVIGLTPTD 342 (729)
Q Consensus 266 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~ 342 (729)
.+...+..+|+.++.+|.+.|++++|+++|++|.+.+. .+...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 34456778888888889999999999999988887542 24445555554444333222211 11 3334333322233
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 004813 343 DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEE 422 (729)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (729)
.++ +.++..|.+.|++++|.++|+++.+. ..+..+|+.++.+|.+.|+
T Consensus 273 ~~~-------------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 273 SLY-------------------------------MLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHH-------------------------------HTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTC
T ss_pred HHH-------------------------------HHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcC
Confidence 333 56677777888888888888887765 2378888889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCC 502 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 502 (729)
+++|.++|+++...++. +..++..++.++.+.|++++|..+++.+.+... .+..++..++..|.+.|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998877533 677888888999999999999999999886543 3788888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004813 503 MSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV 582 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 582 (729)
+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +.
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 88753 4467789999999999999999999999998775 457788999999999999999999999999887544 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 554 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 89999999999999999999999999876 66787 7899999999999999999999999998873 66889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDAT-THGLLVGSS 697 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~ 697 (729)
.++.+|.+.|++++|.++++++.+. .|+.. .+..+..++
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999999984 56554 444444433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=355.40 Aligned_cols=521 Identities=10% Similarity=-0.001 Sum_probs=342.7
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..+.+..+...|... ..++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD-----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccc-----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 445555555555443 2357888999999999999999999999999865 457788999999999999999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
.+|+++.. .+++..+++.++.++.+. |++++|..+|+++... +.. ...+.+.++ ...
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKL-YDWQGALNLLGETNPF----RKD-----EKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHT-TCHHHHHHHHCSSCTT----C---------------C-----------CCS
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHH-hhHHHHHHHHhccCCc----ccc-----ccccccccc-----------ccc
Confidence 99999865 368889999999999999 9999999999953321 100 000000000 011
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCHh
Q 004813 232 GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAI--RL-FKMMRALDLMPDEL 308 (729)
Q Consensus 232 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~p~~~ 308 (729)
+..++..+|+.++.+|.+.|++++|.++|+++.+.+. .+...+..+...+...++.+.+. .+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 2333444555555555555555555555555544321 12233333333222222111111 11 23333322223334
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCC
Q 004813 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGK 388 (729)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~ 388 (729)
+|+.++..|.+.|++++|.++|+++.+. +++..++ ..++..|.+.|+
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-------------------------------~~l~~~~~~~g~ 320 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL-------------------------------LCKADTLFVRSR 320 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH-------------------------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH-------------------------------HHHHHHHHHhcC
Confidence 4555555666666666666666666543 3455555 556666666666
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 004813 389 FFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQV 468 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 468 (729)
+++|.++|+++...++.+..+|+.++.++.+.|++++|.++++++.... +.+..++..++..|.+.|++++|.++|+++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6666666666665555566667777777777777777777777776543 335667777777777777788887777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004813 469 SAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS 548 (729)
Q Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 548 (729)
.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 400 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 400 STMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 765333 56777788888888888888888888877653 4467778888888888888888888888887764 44677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 555 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 7888888888888888888888887765 55666 6788888888888888888888888887753 336778888
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
+..+|.+.|++++|.+.++++.+. .+.+...|..+..+|
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAI-SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 888888888888888888888876 355666776666655
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.9e-26 Score=235.19 Aligned_cols=378 Identities=11% Similarity=-0.021 Sum_probs=202.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004813 247 LIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDA 326 (729)
Q Consensus 247 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 326 (729)
+.+.|++++|.+.+..+.+..+ .+...+..+...+...|++++|...++...+... .+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 3344455555554444443221 2233334444444455555555555544444321 3344455555555555555555
Q ss_pred HHHHHHHHHcCCCCCH-HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 327 NDILEDMIVIGLTPTD-DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 327 ~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
...|+++.+. .|+. ..+ ..+...+.+.|++++|.+.|+++...++.
T Consensus 87 ~~~~~~al~~--~p~~~~~~-------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGY-------------------------------INLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHH-------------------------------HHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHc--CcchHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555442 1222 223 44444455555555555555555444443
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
+...+..+...+...|++++|.+.|+++....+ .+..+|..+...+...|++++|...|+++.+.++. +...+..+..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 211 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 444445555555555555555555555554421 13455555556666666666666666666554332 4555666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKD 565 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 565 (729)
.+...|++++|...++++.... +.+..++..+..+|...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666665542 2245556666666666666666666666666543 2334556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
|.+.|+++.+..+ .+..+|..+...+...|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.++++.+
T Consensus 290 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665532 25556666666666666666666666666553 122345556666666666666666666666665
Q ss_pred CCCCCCHHhHHHHHHHHHhcC
Q 004813 646 DSEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 646 ~~~~~~~~~~~~l~~~~~~~g 666 (729)
. .|.+...|..+...+...|
T Consensus 368 ~-~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 I-SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp T-CTTCHHHHHHHHHHHHHTC
T ss_pred h-CCCCHHHHHhHHHHHHHcc
Confidence 4 2344555555555555443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.4e-29 Score=259.89 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=159.4
Q ss_pred HHHHHHHHHhCCCcccH-HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 004813 150 AMRVLVNMNSGGFKLSV-DVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNR---------IE 219 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~---------~~ 219 (729)
+..+.+++.+.+....+ ..++.+|.+|++. |++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544433 3467778888888 8888888888888888888888888888888776544 67
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 220 SALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 220 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (729)
.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88889999988888999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 300 ALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 300 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 889889999999999999999999999999999998888999999866555554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4e-29 Score=259.38 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------hhHHHHHHHHHHHcCCCCCHHHH
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR---------AKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .++|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE 665 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 665 (729)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhh
Q 004813 666 GLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 666 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 699 (729)
|++++|.+++++|.+.|..|+..||+.++..+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4e-26 Score=234.19 Aligned_cols=378 Identities=12% Similarity=-0.017 Sum_probs=322.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGK 357 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 357 (729)
+...+.+.|++++|.+.+.++.+..+ .+...+..+...+...|++++|...++...+.. +.+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~------------ 70 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAY------------ 70 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH------------
Confidence 34567788999999999988877542 345667777778889999999999998887753 3455666
Q ss_pred hHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 358 FDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 358 ~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
..+...|.+.|++++|...|+++....+.+..+|..+..++.+.|++++|.+.|+++.+..
T Consensus 71 -------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 71 -------------------SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp -------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred -------------------HHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7888888999999999999999988877677889999999999999999999999998874
Q ss_pred CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 438 VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 438 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
+. +...+..+...+...|++++|...|+.+.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...+..
T Consensus 132 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 132 PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp TT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 32 4556777788889999999999999999987544 67889999999999999999999999999864 446778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+...+...|++++|...++++.+.. +.+..++..+..++...|++++|++.|+++.+.++. +..+|..+...+.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998875 346788999999999999999999999999987544 67889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
+++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+. .+.+..+|..++..|.+.|++++|.+.+++
T Consensus 287 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999986 3457889999999999999999999999999987 466788999999999999999999999999
Q ss_pred HHhCCCCCCH-HHHHHHHhhh
Q 004813 678 MLGKGWVPDA-TTHGLLVGSS 697 (729)
Q Consensus 678 ~~~~g~~p~~-~~~~~ll~~~ 697 (729)
+.+ ..|+. ..|..+-..+
T Consensus 365 a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 365 AIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHT--TCTTCHHHHHHHHHHH
T ss_pred HHh--hCCCCHHHHHhHHHHH
Confidence 997 45654 3444444433
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-23 Score=225.19 Aligned_cols=456 Identities=9% Similarity=-0.047 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
..+......+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|...++.+.+.++ .+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 445556666667777777777777776643 5666777777777777777777777777766432 3455666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHH
Q 004813 283 CRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESV 362 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 362 (729)
.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..-...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 159 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP--- 159 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC---
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc---
Confidence 777777777777777766543 3333444444444433333333333333322222222221110000000000000
Q ss_pred HHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh---cCCHHHHHHHHHHHHH----
Q 004813 363 NFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE---NEEIRKAYELLGRMVV---- 435 (729)
Q Consensus 363 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~---- 435 (729)
-...+..+............+ ..+.+...+......+.. .|++++|...|+++..
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 160 -------------SVTSMASFFGIFKPELTFANY-----DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp -------------CHHHHHHHHTTSCCCCCCSSC-----CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------hhHHHHHHHhhcCHHHHHHHh-----cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 000011111100000000000 000023333344444443 7888888888888876
Q ss_pred -CCCC--------CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 436 -SSVV--------PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 436 -~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
.... .+..++..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 3111 23456777788889999999999999999886544 778888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004813 507 GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC 586 (729)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 586 (729)
. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...|.
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 376 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPN 376 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHH
Confidence 4 4567788889999999999999999999998875 345678888889999999999999999999887443 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhc---cCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGL-VPD----RETMLSLLHGLAD---GSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
.+...+...|++++|...++++.+... .++ ...+..+..++.. .|++++|...++++.+. .+.+..+|..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHH
Confidence 899999999999999999999887421 112 3478888999999 99999999999999887 45678889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 659 INGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
+..|.+.|++++|.+.++++.+. .|+.....
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~ 486 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADL--ARTMEEKL 486 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--ccccHHHH
Confidence 99999999999999999999984 57665443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-22 Score=216.60 Aligned_cols=439 Identities=8% Similarity=-0.064 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHH
Q 004813 97 DTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAI 176 (729)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (729)
..+......+.+.|++++|...|+++.+.+ |+..++..++.+|.+.|++++|.+.|+++.+.+ +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 344555566666666666666666666654 356666666666666666666666666665543 33445566666666
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 004813 177 VEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256 (729)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 256 (729)
.+. |++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 84 ~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGL-GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHT-TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHH-hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 666 666666666666666542 233333344443333333333333332222222112211111111111111111111
Q ss_pred HHHHHHHHHCCC---------CCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CCHhhHH
Q 004813 257 VSILGEMFDLGI---------QLELSFYTCIIPMLCR---ENKLEEAIRLFKMMRA-----LDLM--------PDELTYE 311 (729)
Q Consensus 257 ~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--------p~~~~~~ 311 (729)
..+...+..... +.+...+......+.. .|++++|..+|+++.+ ..-. .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1123334444444443 7788888888877776 3111 1244566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhH
Q 004813 312 ELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFL 391 (729)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (729)
.+...+...|++++|...++++.+.. |+...+ ..+...+...|++++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~-------------------------------~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY-------------------------------IYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH-------------------------------HHHHHHHHTSSCCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH-------------------------------HHHHHHHHHCCCHHH
Confidence 67777778888888888888877654 334444 556666777777777
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 004813 392 AKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQ 471 (729)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 471 (729)
|...++++....+.+...+..+...+...|++++|...+++....... +...+..+...+...|++++|...++.+.+.
T Consensus 289 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777666555666666666677777777777777766655322 4455555666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC
Q 004813 472 SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC-SLS----SSSFNILIYGLCV---MRKVDKAIRLRSLAYSSGT 543 (729)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 543 (729)
... +...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+..
T Consensus 368 ~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~- 445 (514)
T 2gw1_A 368 FPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD- 445 (514)
T ss_dssp STT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred ccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-
Confidence 322 344555556666666666666666665544210 001 2245555555555 555555555555555443
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 544 SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 544 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+.+..++..+...+.+.|++++|.+.|++..+.
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 233444455555555555555555555555544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3.9e-22 Score=209.10 Aligned_cols=391 Identities=10% Similarity=-0.008 Sum_probs=257.7
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 256 SVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.+... .+..+|..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444322 24456677777777777888888888877776432 4566777777777777777777777777776
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchH
Q 004813 336 IGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADC---DSWNI 412 (729)
Q Consensus 336 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 412 (729)
.+ +.+...+ ..+...|.+.|++++|...|+++....+.+. ..+..
T Consensus 89 ~~-p~~~~~~-------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 89 LK-MDFTAAR-------------------------------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp HC-TTCHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cC-CCcHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 53 1123333 6677777777777777777777777655433 44444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK 492 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 492 (729)
++..+.. ..+..+...+...|++++|...|+.+.+.... +...+..+..+|.+.|+
T Consensus 137 l~~~~~~-----------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 137 LIKSDEM-----------------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHH-----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCC
Confidence 4333111 11222334466677777777777777765433 66677777777777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH------------HHHHHhc
Q 004813 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKI------------MLGLVKL 560 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~ 560 (729)
+++|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+...+..+ ...+.+.
T Consensus 193 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 193 PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888777776643 3456777777777777888888888887777653 2233344333 6778888
Q ss_pred CChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 561 QRAKDLLVVLAQMLVEGCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
|++++|...|+++.+..+. + ...|..+..++.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|
T Consensus 271 g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888876332 2 3467778888888888888888888887742 23577888888888888889999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHH------------HHHhcC-----ChhHHHHHHHH-HHhCCCCCCH-----------
Q 004813 637 SSGINKLVSDSEVLDSSMYNILIN------------GLWKEG-----LTSQASYLLDL-MLGKGWVPDA----------- 687 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~-~~~~g~~p~~----------- 687 (729)
...++++.+. .+.+...+..+.. .|...| +.+++.+.+++ .++ ..||.
T Consensus 349 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~ 425 (450)
T 2y4t_A 349 IQDYETAQEH-NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAE 425 (450)
T ss_dssp HHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHh-CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHH
Confidence 9888888886 3556667777663 344445 56777888886 333 33432
Q ss_pred HHHHHHHhhhhhcchhhhhhhccc
Q 004813 688 TTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 688 ~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
..+..+..++...++++....|++
T Consensus 426 ~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 426 KKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HHHHHHHHHHHHSSGGGGC-----
T ss_pred HHHHHHHHHHHHhCCHHHHHhccC
Confidence 367888899999999998888874
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.4e-21 Score=209.96 Aligned_cols=438 Identities=10% Similarity=0.028 Sum_probs=291.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIP 280 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 280 (729)
....|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++++.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34567778888888888888888888887753 33677788888888888888888888888887543 45677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHhHHHHHHHHHc
Q 004813 281 MLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVI------GLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~ 354 (729)
++...|++++|.+.|+.+.. . |+. ....+..+...+....|...++++... ...|+.... ..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-N--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL----ASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc-C--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----HHHHH
Confidence 88888888888888864322 1 221 122234455555667788888777543 122332222 22223
Q ss_pred cCChHHHHHHHHhhcCCCCC---CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHH
Q 004813 355 VGKFDESVNFLEDKCGYVTS---PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLG 431 (729)
Q Consensus 355 ~~~~~~a~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 431 (729)
..+.+.+...+......+.. ....+...+...+ .......|++++|..+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD--------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH--------------------------HHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh--------------------------hhhHHHHHHHHHHHHHHH
Confidence 33333333222222221111 0111111110000 000111246777777787
Q ss_pred HHHHCCCCCC------HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004813 432 RMVVSSVVPD------CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK 505 (729)
Q Consensus 432 ~~~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 505 (729)
++.+..+... ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 7776532210 2245556667778888888888888888763 4477778888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 506 NGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+
T Consensus 305 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 381 (537)
T 3fp2_A 305 LN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVP 381 (537)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHH
T ss_pred cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 53 4467788888888888888888888888888765 344567788888888888888898888888877543 56678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcc----------CChHHHHHHHHHHHhCCCCC
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAG-----LVPDRETMLSLLHGLADG----------SQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 650 (729)
..+...+...|++++|.+.|+++.+.. .......+.....++... |++++|...++++.+. .+.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCC
Confidence 888888888889999988888887641 111222344455666666 8889999999988886 456
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
+...|..++..|.+.|++++|.+.|+++.+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7778888899999999999999999988874
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=3.7e-21 Score=206.72 Aligned_cols=444 Identities=8% Similarity=-0.024 Sum_probs=329.8
Q ss_pred cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 004813 165 SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244 (729)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 244 (729)
....+..+...+.+. |++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.+.. +.+...+..+.
T Consensus 24 ~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA-KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHT-TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 346677788888898 99999999999999875 4478899999999999999999999999998853 33678888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCC
Q 004813 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDL--MPDELTYEELINCLCENLR 322 (729)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~ 322 (729)
.++...|++++|...|+.+ ... |+. ....+..+...+....|...++.+..... .+........+..+....+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999999743 322 222 22234456666777899999999876421 1111122334555666677
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 323 LDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR 402 (729)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 402 (729)
.+.+...+.+... ..+....+...+..... ...-......|++++|..+++++.+.
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~----------------------~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYS----------------------ATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHT----------------------CSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHH----------------------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7666555444322 22332222222221111 11122233356778888888888877
Q ss_pred CCCCcc-------cchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC
Q 004813 403 KIADCD-------SWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL 475 (729)
Q Consensus 403 ~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 475 (729)
.+.+.. ++..+...+...|++++|...++++... .|+...+..+...+...|++++|...++.+.+....
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 308 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE- 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-
Confidence 665433 4666667788899999999999999886 455788888899999999999999999999887544
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 78889999999999999999999999998864 4457788999999999999999999999998875 455678888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGC-----ALDVEAYCILIQSMSEQ----------NKLKDCALFFNVMVKAGLVPDRETM 620 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~p~~~~~ 620 (729)
.+...|++++|.+.|+++.+..+ ......+......+... |++++|...|+++.+.. +.+...+
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 465 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAK 465 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 99999999999999999887521 11233344556677777 99999999999999853 2357888
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 621 LSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+..+|...|++++|.+.++++.+.
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.2e-21 Score=199.91 Aligned_cols=385 Identities=10% Similarity=-0.013 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 219 ESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 219 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
..+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+... .+..++..+..+|...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555555432 34677888999999999999999999999987543 56888999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDD----VFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 299 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
.+.+. .+..++..+..+|...|++++|...|+++.+. .|+.. .+
T Consensus 87 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~----------------------------- 134 (450)
T 2y4t_A 87 IQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQ----------------------------- 134 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHH-----------------------------
T ss_pred HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHH-----------------------------
Confidence 88753 46788999999999999999999999999875 35543 23
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 454 (729)
..+...+... .+..+...+...|++++|...|+++.... +.+...+..+...+.+
T Consensus 135 --~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 135 --SQLIKSDEMQ----------------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIK 189 (450)
T ss_dssp --HHHHHHHHHH----------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4454432111 12223334455566666666666665543 2245556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNIL------------IYGL 522 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~ 522 (729)
.|++++|...|+.+.+.... +..++..+...|...|++++|...|+++.... +.+...+..+ ...+
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554322 55666666666666666666666666666542 2233333333 6677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYT-----TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|+..++++.+..+. +...|..+..+|...|+
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcC
Confidence 77788888888887777653 33 335667777778888888888888887766332 56777778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH------------HhccC-----ChHHHHHHHHH-HHhCCCCCC----H--
Q 004813 598 LKDCALFFNVMVKAGLVPD-RETMLSLLHG------------LADGS-----QLHLVSSGINK-LVSDSEVLD----S-- 652 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~----~-- 652 (729)
+++|.+.++++.+. .|+ ...+..+..+ |...| +.+++.+.+++ ..+. .|| .
T Consensus 345 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~ 420 (450)
T 2y4t_A 345 YDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEE 420 (450)
T ss_dssp HHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHH
T ss_pred HHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchH
Confidence 88888888888763 444 4444444422 33333 56677887876 3333 222 1
Q ss_pred -----HhHHHHHHHHHhcCChhHH
Q 004813 653 -----SMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 653 -----~~~~~l~~~~~~~g~~~~A 671 (729)
..+..+..+|...||.+++
T Consensus 421 ~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 421 KKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2555666666666665554
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=2.3e-16 Score=172.94 Aligned_cols=219 Identities=13% Similarity=0.158 Sum_probs=96.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
.+++++|.++.++.. +..+|..+.+++...|++++|...|.+. .|...|..++..+.+.|++++|.+.
T Consensus 1089 i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 344455554444331 2344445555555555555555554332 2333444445555555555555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 295 FKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 295 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
|....+.. ++....+.++.+|++.+++++...+. + .++...+..+...|...|++++|..+|... .
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----S 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----h
Confidence 54444332 22222223444444444444322221 1 133334444444555555555555554443 2
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 454 (729)
.|..+...|.+.|+++.|.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHH
Confidence 34445555555555555555554431 3344444444444444444444433321 1233334444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 004813 455 LCNYEDALRVFRQVS 469 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~ 469 (729)
.|.+++|+.+++...
T Consensus 1293 ~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1293 RGYFEELITMLEAAL 1307 (1630)
T ss_pred cCCHHHHHHHHHHHh
Confidence 455555554444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.8e-18 Score=175.12 Aligned_cols=313 Identities=11% Similarity=-0.013 Sum_probs=253.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+...+...|++++|...|+++....+.+...+..+...+...|++++|...++++....+ .+...+..+...+...|
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcC
Confidence 56677788889999999999988887777778888889999999999999999999887643 25677888888889999
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLV--LDSISYSKL------------VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 999999999998876430 144444444 578888999999999999998864 45778889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH------------HHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC------------ILIQ 590 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~------------~l~~ 590 (729)
...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+. .+..
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 567788899999999999999999999999887443 444333 2366
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPD-R----ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE 665 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 665 (729)
.+...|++++|.+.++++.+.. |+ . ..+..+..++...|++++|...++++.+. .+.+...|..++..|...
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHc
Confidence 7889999999999999999853 44 3 23455778899999999999999999987 466888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhhh
Q 004813 666 GLTSQASYLLDLMLGKGWVPDAT-THGLLVGSSV 698 (729)
Q Consensus 666 g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~ 698 (729)
|++++|.+.++++.+. .|+.. .+..+..+..
T Consensus 320 g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 9999999999999974 57644 4444444443
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.1e-15 Score=167.70 Aligned_cols=437 Identities=11% Similarity=0.116 Sum_probs=274.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 004813 63 PDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFS 140 (729)
Q Consensus 63 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 140 (729)
...++++..+.+-+...-+.+- + +.++..|..++. ... +.=.++.+......+ ..++.-....+++
T Consensus 927 d~eli~vt~~n~l~k~~arylv---~----r~d~~lW~~vl~---~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKa 994 (1630)
T 1xi4_A 927 DLELINVCNENSLFKSLSRYLV---R----RKDPELWGSVLL---ESN--PYRRPLIDQVVQTALSETQDPEEVSVTVKA 994 (1630)
T ss_pred cHHHHHHHhcchhHHHHHHHHH---H----hcCHHHHHHHhc---CCc--HHHHHHHHHHHHhhcccccCHHHhHHHHHH
Confidence 4456666666666543322221 1 245666665552 111 111122222222211 2345556677778
Q ss_pred HHhcCChhhHHHHHHHHHhCCC--cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004813 141 FVNHYRVNGAMRVLVNMNSGGF--KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRI 218 (729)
Q Consensus 141 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 218 (729)
|...|.+.+|++++++....+- .-+...-+.++....+. +.....+...++... + ..-+...+...|.+
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNY----D---APDIANIAISNELF 1065 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCH
Confidence 8888888888888888863321 12334455566666554 455566655555421 1 33366677778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 219 ESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 219 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|++.|.+.
T Consensus 1066 EEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 888888887521 2222233322 567788888877755 33566778888888888888888888553
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchH
Q 004813 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNA 378 (729)
Q Consensus 299 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 378 (729)
.|...|..++.++.+.|++++|.++|....+.. ++......++.+|++.+++++...++. ..+...+..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHHHHH
Confidence 456677778888888888888888887766643 333334457778888888776444432 222233556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+-.+|...|++
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 777788888888888888774 36788888888888888888888766 2567787777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM--RKVDKAIRLRS 536 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~ 536 (729)
..|......+ ..++..+..++..|.+.|.+++|+.+++...... +.....|+-+...|++. ++..++.++|.
T Consensus 1267 ~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8777765542 2355666778888888888888888887776543 33445666666666543 34445555554
Q ss_pred HHHHcCCCC------CHHhHHHHHHHHHhcCChhHHH
Q 004813 537 LAYSSGTSY------TTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 537 ~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
.-.. +++ +...|..++..|.+.|+++.|.
T Consensus 1341 ~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1341 SRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred Hhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3222 122 4556777777888888888776
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=7.8e-18 Score=170.34 Aligned_cols=330 Identities=9% Similarity=-0.016 Sum_probs=224.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHhHHHHHH
Q 004813 272 LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP-TDDVFVDIVR 350 (729)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 350 (729)
+..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+.. | +...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~----- 74 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAAR----- 74 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHH-----
Confidence 44566667777777777777777777766542 345667777777777777777777777776642 3 23333
Q ss_pred HHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCC---CCcccchHHHHHHHhcCCHHHHH
Q 004813 351 GLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKI---ADCDSWNIPIRWLCENEEIRKAY 427 (729)
Q Consensus 351 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 427 (729)
..+...+...|++++|...|+++....+ .+...+..+...+.
T Consensus 75 --------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 119 (359)
T 3ieg_A 75 --------------------------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE--------- 119 (359)
T ss_dssp --------------------------HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------
T ss_pred --------------------------HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH---------
Confidence 5666677777777777777777766654 22222222211000
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004813 428 ELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG 507 (729)
Q Consensus 428 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 507 (729)
...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+..
T Consensus 120 --------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 184 (359)
T 3ieg_A 120 --------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK 184 (359)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111222345667777778888777777765443 66677777777777888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH------------HHHHHHHhcCChhHHHHHHHHHHH
Q 004813 508 CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT------------KIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+.+..++..+...+...|++++|...++++.+.. +.+...+. .+...+.+.|++++|...++++.+
T Consensus 185 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 185 -SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp -SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4466777777777778888888888887777654 22233222 235668888999999999999888
Q ss_pred cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 004813 576 EGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD 651 (729)
Q Consensus 576 ~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 651 (729)
..+. +. ..+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.++++.+. .+.+
T Consensus 263 ~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~ 339 (359)
T 3ieg_A 263 TEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-NEND 339 (359)
T ss_dssp HCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTC
T ss_pred cCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Confidence 6433 33 234457788889999999999999998852 236778888899999999999999999999987 3555
Q ss_pred HHhHHHHHHHHHh
Q 004813 652 SSMYNILINGLWK 664 (729)
Q Consensus 652 ~~~~~~l~~~~~~ 664 (729)
...+..+..+...
T Consensus 340 ~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 340 QQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6666666665543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.5e-16 Score=162.99 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCH
Q 004813 201 NVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA----NSRVDDSVSILGEMFDLGIQLEL 272 (729)
Q Consensus 201 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 272 (729)
+...+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 566666666666665543 44455555555555 566666666666665543 33
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 004813 273 SFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCE----NLRLDDANDILEDMIVI 336 (729)
Q Consensus 273 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 336 (729)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 444455555555 556666666666655543 34444555555544 45566666666655554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.9e-18 Score=168.56 Aligned_cols=291 Identities=11% Similarity=-0.070 Sum_probs=193.8
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
+...+..+...+...|++++|.++++++....+. +...+..++..+...|++++|..+++.+.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 4555666666666667777777777766655322 3444555556666777777777777776665433 5556666777
Q ss_pred HHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 004813 486 GLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAK 564 (729)
Q Consensus 486 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 564 (729)
.+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 777777 7777777777776653 3345667777777777777777777777777654 233455566777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhccCChHHH
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG--------LVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+|.+.++++.+..+. +...+..+...+...|++++|...++++.+.. ...+...+..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 777777777766433 56677777777777788888888777776531 122346777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHhhh-hhcchhh
Q 004813 637 SSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD-ATTHGLLVGSS-VGEEIDS 704 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~-~~~~~~~ 704 (729)
...++++.+. .+.+...|..++..|...|++++|.+.++++.+. .|+ ...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 8888887776 3556677788888888888888888888877763 453 44455555555 3444443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.1e-15 Score=161.09 Aligned_cols=336 Identities=11% Similarity=-0.009 Sum_probs=161.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCC
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA----NSR 252 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 252 (729)
++++.|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 55555555555555432 34445555555555 555555555555555543 34444445555554 455
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChh
Q 004813 253 VDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCE----NLRLD 324 (729)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~ 324 (729)
+++|...|+...+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .++++
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 666666666555543 34445555555554 556666666666666543 45555556556655 56666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHh----cCChhHHHHHHHHHH
Q 004813 325 DANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCN----AGKFFLAKCILEKMA 400 (729)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 400 (729)
+|...|++..+.| +...+ ..+...|.. .+++++|..+|++..
T Consensus 205 ~A~~~~~~a~~~~---~~~a~-------------------------------~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQ-------------------------------LHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHH-------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHH-------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6666666666543 23333 223333332 344444444444444
Q ss_pred hCCCCCcccchHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhc-----CCHHHHHHHHHHHHhC
Q 004813 401 DRKIADCDSWNIPIRWLCE----NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL-----CNYEDALRVFRQVSAQ 471 (729)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~ 471 (729)
+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|+...+.
T Consensus 251 ~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 251 EQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 332 22233333333333 444555555555444332 223333333333333 4455555555554443
Q ss_pred CCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 004813 472 SLVLDSISYSKLVEGLCQVE---KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSGTS 544 (729)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 544 (729)
+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.+
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 2 2233344444444333 4445555555554432 34444444444444 445555555555544432
Q ss_pred CCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 004813 545 YTTSTYTKIMLGLVK----LQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 576 (729)
+...+..|...|.. .+++++|...|++..+.
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 23344444444444 44444454444444444
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.4e-17 Score=166.22 Aligned_cols=291 Identities=9% Similarity=-0.063 Sum_probs=246.0
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 373 TSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
+..+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++..... .+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHH
Confidence 334477778888889999999999999988877788888888999999999999999999988653 3677888888899
Q ss_pred hhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 453 CKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKA 531 (729)
Q Consensus 453 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 531 (729)
...| ++++|...|+.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 9999 999999999999987544 67788899999999999999999999998864 34567777899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 532 IRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG--------CALDVEAYCILIQSMSEQNKLKDCAL 603 (729)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~A~~ 603 (729)
.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ...+...|..+...+...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998875 4567888999999999999999999999998752 13346788899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChh
Q 004813 604 FFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL-WKEGLTS 669 (729)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 669 (729)
.++++.+.. +.+...+..+..+|...|++++|.+.++++.+. .+.+...+..+..++ ...|+.+
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 999999853 235678889999999999999999999999987 466788888898888 4556544
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.2e-16 Score=167.14 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH
Q 004813 93 QHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV 172 (729)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (729)
|.+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++.... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 567788888887 477889999999999988775 7788889999999999999999999999987753 577777777
Q ss_pred HHHHHhcCCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHh
Q 004813 173 LGAIVEEKRGFADFVF----VYKEMVKA-GIVP-NVDTLNYLLEVLFE---------TNRIESALDQFRRMHK 230 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~ 230 (729)
+.......|+++.|.+ +|++..+. |..| +...|...+....+ .|+++.|..+|++..+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 6544333277776655 66666542 4333 45677777766554 6788889999988887
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.9e-16 Score=166.45 Aligned_cols=420 Identities=9% Similarity=0.000 Sum_probs=259.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004813 236 NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELIN 315 (729)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 315 (729)
+...|..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++..... |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 4455555555 345566666666666666532 2345556666666666666666666666666543 45555555443
Q ss_pred H-HHhcCChhHHHH----HHHHHHHc-CCCCC-HHhHHHHHHHHHc---------cCChHHHHHHHHhhcCCCCCCchHH
Q 004813 316 C-LCENLRLDDAND----ILEDMIVI-GLTPT-DDVFVDIVRGLCE---------VGKFDESVNFLEDKCGYVTSPHNAL 379 (729)
Q Consensus 316 ~-~~~~~~~~~a~~----~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~l~~~~~~~~~~~~~l 379 (729)
. ....|+.+.|.+ +|++.+.. |..|+ ...+...+....+ .|+++.|..+|+............+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 2 223455555444 55555432 43333 3444333333322 4556666666665544211111111
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------H
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM------VVSS---VVPD--------C 442 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~p~--------~ 442 (729)
...|.. ++... +..+...++. ...+++..|..++..+ .+.. +.|+ .
T Consensus 168 ~~~~~~---~e~~~------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 168 WRDYNK---YEEGI------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHH---HHHHH------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHH---HHHhh------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111111 00000 0000000000 1234566676666652 2221 2333 1
Q ss_pred HhHHHHHHHHhh----cCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHH
Q 004813 443 ATYSAFVLGKCK----LCNY----EDALRVFRQVSAQSLVLDSISYSKLVEGLCQ-------VEKIT-------EAVEVF 500 (729)
Q Consensus 443 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~ 500 (729)
..|...+..... .++. +.+..+|+++....+. +...|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 344444332221 1222 4677888888876433 77888888887775 68887 899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 501 CCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYT--TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC 578 (729)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 578 (729)
++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+...
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99986322446888999999999999999999999999985 343 35788888888899999999999999987633
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-CCC--CHHh
Q 004813 579 ALDVEAYCILIQS-MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-EVL--DSSM 654 (729)
Q Consensus 579 ~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~ 654 (729)
. +...|...... +...|++++|..+|++.++.. +-+...|..++..+.+.|+.++|..+|++....+ ..| ....
T Consensus 388 ~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 388 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp C-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred C-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 2 33333322222 346899999999999998852 2257889999999999999999999999999872 122 2348
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
|...+......|+.+.+..+++++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999999999998873
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=2.4e-17 Score=167.50 Aligned_cols=286 Identities=7% Similarity=-0.079 Sum_probs=193.1
Q ss_pred cCChhHHHH-HHHHHHhCCCC----CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHH
Q 004813 386 AGKFFLAKC-ILEKMADRKIA----DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYED 460 (729)
Q Consensus 386 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 460 (729)
.|++++|.. .+++.....+. +...+..+...+.+.|++++|...|+++.+..+ .+...+..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 455555555 55543333222 245566677777777777777777777776542 355666677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 004813 461 ALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI---------------LIYGLCVM 525 (729)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 525 (729)
|...++.+.+.... +...+..+...|...|++++|...++++.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777765433 66677777777777777777777777777653 112222211 13333377
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
|++++|...|+++.+..... +..++..+...+...|++++|+..++++.+..+. +...|..+...+...|++++|.+.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887764221 4677788888888888888888888888776433 577788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-----------HHhHHHHHHHHHhcCChhHHHH
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-----------SSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
++++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +.+ ..+|..++.+|...|++++|..
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 88887742 2346777888888888888888888888877651 222 5778888888888888888887
Q ss_pred HHHH
Q 004813 674 LLDL 677 (729)
Q Consensus 674 ~~~~ 677 (729)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 7664
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=8.1e-17 Score=163.53 Aligned_cols=303 Identities=12% Similarity=-0.048 Sum_probs=139.1
Q ss_pred cCChhHHHH-HHHHHHHCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004813 250 NSRVDDSVS-ILGEMFDLGI---QLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDD 325 (729)
Q Consensus 250 ~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 325 (729)
.|++++|.. .+++..+... ..+...+..+...+.+.|++++|...|+++.+... .+..+|..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554432211 11234455566666666666666666666665432 345556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 326 ANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
|...|+++.+.. +.+..++ ..+...|...|++++|...++++....+.
T Consensus 117 A~~~~~~al~~~-~~~~~~~-------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTAL-------------------------------MALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhcC-CCCHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 666666666543 1233334 44444455555555555555555554443
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL-DSISYSKLV 484 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 484 (729)
+...+..+.... . ...+. ..+.. +..+...|++++|...++.+.+..... +..++..+.
T Consensus 165 ~~~~~~~~~~~~-------~-----------~~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 165 YAHLVTPAEEGA-------G-----------GAGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TGGGCC----------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cHHHHHHHHHHh-------h-----------hhccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 222222110000 0 00000 00001 111113444444444444444332111 244444555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 004813 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAK 564 (729)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 564 (729)
..|.+.|++++|...++++.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|+++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555554432 2234455555555555555555555555555442 233445555555555555555
Q ss_pred HHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 565 DLLVVLAQMLVEGCAL----------DVEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
+|...|+++.+..+.. ...+|..+..+|...|++++|..++.+
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5555555555432111 145566666666666666666665543
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=8.4e-17 Score=158.38 Aligned_cols=237 Identities=12% Similarity=0.099 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 260 (729)
|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666662 2236667777777777777777776432 35556666666666666676666655
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004813 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP 340 (729)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 340 (729)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 555542 2445566666666666666666666553 145556666666666666666666666644
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 004813 341 TDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCEN 420 (729)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (729)
..| ..++.++.+.|++++|.+.++++. ++.+|..++.+|...
T Consensus 149 --~n~-------------------------------~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 149 --SNF-------------------------------GRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDG 190 (449)
T ss_dssp --TCH-------------------------------HHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHT
T ss_pred --hhH-------------------------------HHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHc
Confidence 133 555666666666666666666551 455566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 421 EEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 421 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
|+++.|......+ ...+.-...++..|.+.|.+++|..+++...... +-....|+-+.-.|++
T Consensus 191 ~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 191 KEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6666663333221 1122223345555666666666666666655443 2244455555444443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=8.8e-16 Score=161.69 Aligned_cols=375 Identities=9% Similarity=-0.048 Sum_probs=219.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRAL--------DLMPDELTYEELINCLCENLRLDDANDILEDMIVIG----- 337 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----- 337 (729)
....||.|...+...|++++|++.|++..+. .-.....+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777665431 111235678888888888888888888888776421
Q ss_pred -CCC-CHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 004813 338 -LTP-TDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIR 415 (729)
Q Consensus 338 -~~p-~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 415 (729)
..+ ...++.....++. ....+++++|...|++..+..+.+...+..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~-----------------------------~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRL-----------------------------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp SSCCCCHHHHHHHHHHHH-----------------------------HHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHH-----------------------------HHccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111 1233322222211 122345666666666666665555555544444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004813 416 WL---CENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK----LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 416 ~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (729)
.+ ...++.++|++.+++..+..+. +...+..+...+.. .+++++|.+.+++.....+. +...+..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHH
Confidence 32 2345556666666666654322 33444444333332 34566677777776665433 5566667777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCHHh
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV-------------------MRKVDKAIRLRSLAYSSGTSYTTST 549 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~~~~~~~~~~~~~ 549 (729)
..|++++|...++++.+.. +.+..++..+..+|.. .+..+.|...+++..+.. +.+..+
T Consensus 259 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred HcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 7777777777777776642 3344555555544432 223567888888887765 455677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVE--AYCILIQ-SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
+..+...+...|++++|++.|++.++....+... .+..+.. .+...|++++|++.|++.++ +.|+......
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---- 410 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---- 410 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH----
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH----
Confidence 8889999999999999999999998875443221 2223332 23578999999999999998 4565433222
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHH
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG-WVPDATTH 690 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~ 690 (729)
....+.+++++..+. .+.++.+|..++.+|...|++++|++.|++.++.| ..|+..+|
T Consensus 411 -----~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -----HHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred -----HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 234455666666665 46788899999999999999999999999999864 24554443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.2e-16 Score=162.08 Aligned_cols=266 Identities=7% Similarity=-0.062 Sum_probs=181.6
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
+...|..+...+.+.|++++|...|+++....+ .+..++..+...+...|++++|...|+.+.+.... +...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 444577777777778888888888887776643 35667777777788888888888888887776433 5677777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLS-----------SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-YTTSTYTKI 553 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 553 (729)
.|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.... .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888888888877642 22 122234466777778888888888887776422 156677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
...+...|++++|++.|+++.+..+. +..+|..+..+|...|++++|.+.|+++++.. +.+...+..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 77788888888888888887776433 57777778888888888888888888777742 22366777777778888888
Q ss_pred HHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 634 HLVSSGINKLVSDSEV-----------LDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
++|...++++.+.... .+...|..+..++...|+.+.|.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888777664100 0256777788888888887777666543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.2e-16 Score=161.94 Aligned_cols=265 Identities=10% Similarity=-0.094 Sum_probs=218.7
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
+...+..+...+.+.|++++|...|+.+.+..+. +...+..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4456888889999999999999999999987554 78899999999999999999999999998864 456889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-H----------HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYT-T----------STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LDVEAYCIL 588 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l 588 (729)
+|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|++.++++.+..+. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998754 32 2 22334578889999999999999999987443 268899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
...|...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|+..++++.+. .+.+...|..++.+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999999853 335889999999999999999999999999987 466788999999999999999
Q ss_pred hHHHHHHHHHHhCC---CCC--------CHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 669 SQASYLLDLMLGKG---WVP--------DATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 669 ~~A~~~~~~~~~~g---~~p--------~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
++|.+.++++.+.. ..| +...|..+..++...|..+.+.....
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999998632 011 25778888888888888887776654
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=7.9e-16 Score=151.48 Aligned_cols=290 Identities=11% Similarity=0.085 Sum_probs=100.2
Q ss_pred HHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 004813 69 VLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVN 148 (729)
Q Consensus 69 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (729)
++.+.|+.++|.++++.. +.+.+|..++.++.+.|++++|++.|.+. ++...|..++.++...|+++
T Consensus 12 ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHH
Confidence 344566677777777765 12246777777777777777777777542 34556777777777777777
Q ss_pred hHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 149 GAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 149 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 228 (729)
+|+.+++..++. .+++.+.+.++.++.+. |+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 777766655542 34456666777777777 77777666653 355567777777777777777777777655
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 004813 229 HKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDEL 308 (729)
Q Consensus 229 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 308 (729)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 35667777777777777777777766 256667777777777777777755443322 2222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc--CChHHHHHHHHhhcCCCCCCchHHHHHHHhc
Q 004813 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEV--GKFDESVNFLEDKCGYVTSPHNALLECCCNA 386 (729)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~ 386 (729)
-...++..|.+.|.+++|..+++..+... .-....|..+...+++- ++..+.++.|...... ..++++|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini-----~k~~~~~~-- 280 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI-----PKVLRAAE-- 280 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH-----HHHHHHHH--
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC-----cHHHHHHH--
Confidence 23356666777777777777776665432 22344454444444332 2233333333211110 11122111
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHH
Q 004813 387 GKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
+...|..+...|.+.++++.|..
T Consensus 281 -------------------~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 281 -------------------QAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp -------------------TTTCHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhhchHHHHHH
Confidence 45577777777777788877765
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=5.2e-16 Score=154.58 Aligned_cols=265 Identities=8% Similarity=-0.051 Sum_probs=193.7
Q ss_pred cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004813 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEG 486 (729)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (729)
...+..+...+...|++++|..+|+++....+ .+...+..+...+...|++++|...++.+.+.... +...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 34555666677777777777777777766542 25566667777777777788888777777765433 56677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNIL--------------IY-GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT 551 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 551 (729)
+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 777888888888888777653 1222222222 22 3667788888888888888765 34677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS 631 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 631 (729)
.+...+...|++++|.+.++++.+..+. +...|..+...+...|++++|.+.++++.+.. +.+...+..+..+|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 8888888888899998888888877443 67788888888888899999999998888753 235677888888888899
Q ss_pred ChHHHHHHHHHHHhCCCCC------------CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 632 QLHLVSSGINKLVSDSEVL------------DSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
++++|.+.++++.+.. +. +...|..++.++...|++++|.+++++.
T Consensus 255 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998887762 22 4678888999999999999998887654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=4.5e-16 Score=155.08 Aligned_cols=265 Identities=13% Similarity=-0.039 Sum_probs=219.5
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhc
Q 004813 376 HNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL 455 (729)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 455 (729)
+..+...+...|++++|..+|+++.+..+.+...+..+...+...|++++|...++++.... +.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 45667788889999999999999988877778888899999999999999999999998874 33677888888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 456 CNYEDALRVFRQVSAQSLVLDSISYSKL--------------VE-GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 9999999999999876433 22222222 22 3778899999999999998864 447888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 600 (729)
.+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+...|...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998875 456788999999999999999999999999887543 68889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 601 CALFFNVMVKAGLVP-----------DRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 601 A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
|.+.++++.+..... +...+..+..++...|+.++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999998752221 367888999999999999999999876543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.8e-15 Score=146.51 Aligned_cols=256 Identities=11% Similarity=-0.004 Sum_probs=182.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 004813 416 WLCENEEIRKAYELLGRMVVSSVVPDC--ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI 493 (729)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 493 (729)
-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-.|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344567777777777665433 2332 3445566778888888888875543 1345666777788888888888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 494 TEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQ 572 (729)
Q Consensus 494 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 572 (729)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765434 455666677788888888888888776 46677788888888888888888888888
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 004813 573 MLVEGCALDVEAY---CILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV 649 (729)
Q Consensus 573 ~~~~~~~p~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (729)
+.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+. .+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DS 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 88764 332211 12334444557888888888888876 3446778888888888888888888888888876 46
Q ss_pred CCHHhHHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQ-ASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~ 689 (729)
.++.++..++..+...|+.++ +.++++++.+ ..|+...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 677788888888888888865 5678888876 3566543
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=4.2e-15 Score=156.52 Aligned_cols=386 Identities=11% Similarity=-0.032 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKK-----G--CCP-NSRTFEIVIKGLIANSRVDDSVSILGEMFDL-----G 267 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~ 267 (729)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777777777777777777765431 1 112 3456777777777788888887777766531 1
Q ss_pred -CC-CCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCC
Q 004813 268 -IQ-LELSFYTCIIPMLCR--ENKLEEAIRLFKMMRALDLMPDELTYEELINC---LCENLRLDDANDILEDMIVIGLTP 340 (729)
Q Consensus 268 -~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p 340 (729)
.. ....++..+..++.. .+++++|++.|++..+..+ -+...+..+..+ +...++.++|++.+++..+.. |
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--C
Confidence 11 123445544444444 3468888888888776542 233444444333 345677778888888777643 3
Q ss_pred C-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh
Q 004813 341 T-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419 (729)
Q Consensus 341 ~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (729)
+ ...+..+... +...+...+++++|.+.+++.....+.+..++..+...|..
T Consensus 207 ~~~~~~~~l~~~---------------------------~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 207 DNQYLKVLLALK---------------------------LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp SCHHHHHHHHHH---------------------------HHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH---------------------------HHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3 3333222211 11222334566777777777776666666677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
.|++++|...+++..+..+. +..++..+...|...+... .... ...........+.++.|...
T Consensus 260 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 88888888888777765322 3444544444432211000 0000 00000001112234566666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHH-HHHhcCChhHHHHHHHHHHHc
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS--TYTKIML-GLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+++..+.. +.+..++..+...|...|++++|+..|+++.+....+... .+..+.. .....|++++|+..|++.++.
T Consensus 323 ~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 323 LKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66665542 3344556666666777777777777777766654322211 1222222 223556677777777776664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
. |+..... +....+.+++++.++.+ +.+..+|..+..+|...|++++|++.|++..+.
T Consensus 402 ~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 402 N--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp C--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred C--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 3322211 11233444455554432 224556777777777777777777777777765
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=173.48 Aligned_cols=130 Identities=8% Similarity=0.018 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVK---AGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666666543 256666666666666666666666677777666666666777777777
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 659 INGLWKEGLT-SQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 659 ~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
|+++++.|+. ++|.++|++|.+.|+.||..+|+++++++.+.+..+.+..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 7777766653 5666677777766777777777766666666666666665544
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=6.3e-15 Score=142.72 Aligned_cols=275 Identities=7% Similarity=-0.043 Sum_probs=200.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHH
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIAD-CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYE 459 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 459 (729)
+-....|++..|+..+++.....+.+ ......+..+|...|+++.|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33456678888888777665443332 234455678888888888888766541 3556677888888888888999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 460 DALRVFRQVSAQSLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 460 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
+|.+.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999888765434 556667777888899999999998887 457788888888999999999999999998
Q ss_pred HHcCCCCCHHhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 539 YSSGTSYTTSTY---TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP 615 (729)
Q Consensus 539 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 615 (729)
.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...|+.+..++.+.|++++|.+.++++++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8764 443211 2233444455889999999999988743 478888999999999999999999999988853 22
Q ss_pred CHHHHHHHHHHHhccCChHH-HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 616 DRETMLSLLHGLADGSQLHL-VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
+..++..++..+...|+.++ +.++++++.+. .|.++.+ .+...+.+.+++|..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-HRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCChHH----HHHHHHHHHHHHHHHH
Confidence 57788888888888888865 57888888876 2334433 2344555555555443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=175.10 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=112.7
Q ss_pred cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 004813 163 KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVK---AGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRT 239 (729)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 239 (729)
..-..+||++|.+|++. |+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 124 ~~~~~TynaLIdglcK~-G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44556788888888888 888888888877653 47788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HhhHHH
Q 004813 240 FEIVIKGLIANSRV-DDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPD------ELTYEE 312 (729)
Q Consensus 240 ~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ 312 (729)
|+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++..+++ ..+..|+ ..+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 88888888888874 67888888888888888888888888766554 333333333 2233332 344445
Q ss_pred HHHHHHhcC
Q 004813 313 LINCLCENL 321 (729)
Q Consensus 313 li~~~~~~~ 321 (729)
|...|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.9e-14 Score=133.00 Aligned_cols=198 Identities=12% Similarity=-0.016 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..++++.+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666666777777777777777776643 3455666667777777777777777777776654 344556666667
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 556 GLVKL-----------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLL 624 (729)
Q Consensus 556 ~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (729)
++... |++++|+..|++.++..+. +...|..+..++...|++++|+..|++.++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77776 8888888888888877544 67778888888888888888888888888876 5778888888
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.+|...|++++|+..++++.+. .|.+...+..++..+...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888876 45677788888888888888888888887765
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.9e-14 Score=135.51 Aligned_cols=239 Identities=13% Similarity=0.004 Sum_probs=170.9
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC--SLS----SSSFN 516 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 516 (729)
..+..+...+...|++++|...|+.+.+.. .+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455566666777777777777777776665 4666777777777777777777777777665320 111 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN 596 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 596 (729)
.+...+...|++++|...|+++.+.. |+. ..+.+.|++++|...++++....+. +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 77777777888888888887777653 332 3455667788888888888776332 4566777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
++++|.+.++++.+.. +.+...+..+..+|...|++++|...++++.+. .+.+...|..++..|...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888753 235777888888888888899999888888876 35567788888999999999999999988
Q ss_pred HHHhCC----CCCCHHHHHHHHh
Q 004813 677 LMLGKG----WVPDATTHGLLVG 695 (729)
Q Consensus 677 ~~~~~g----~~p~~~~~~~ll~ 695 (729)
+..+.. ..|+.......+.
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHH
Confidence 887632 1266555444443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=6.4e-14 Score=145.11 Aligned_cols=345 Identities=8% Similarity=-0.037 Sum_probs=147.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRL---DDANDILEDMIVIGLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 354 (729)
+...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666778888888888888887765 334455566666667777 7888888887753 44445444443333
Q ss_pred cC-----ChHHHHHHHHhhc-CCCCCCchHHHHHHHhcCChh---HHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHH
Q 004813 355 VG-----KFDESVNFLEDKC-GYVTSPHNALLECCCNAGKFF---LAKCILEKMADRKIADCDSWNIPIRWLCENEEIRK 425 (729)
Q Consensus 355 ~~-----~~~~a~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 425 (729)
.+ +.++|.+.+++.. ..++..+..|...|...+..+ .+.+.+......+ +...+..+...|...+.+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCccc
Confidence 32 4555555555422 223334455555554443322 2333333333322 33444455555555443333
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----CCHHHHHH
Q 004813 426 AYELLGRMVVSSVVPDCATYSAFVLGKCKLC---NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV----EKITEAVE 498 (729)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 498 (729)
+......+...-...+...+..+...|...| +.++|...|+...+.|.. +...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 2222222211111112224444444555555 555555555555555432 333333444444333 45555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-----ChhHHHHHH
Q 004813 499 VFCCMSKNGCSLSSSSFNILIYG-L--CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ-----RAKDLLVVL 570 (729)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~ 570 (729)
.|++.. . -+...+..|... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|.+.|
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 555554 2 233344444443 2 23455555555555555443 3344444444444 22 555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHH
Q 004813 571 AQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVSSGINK 642 (729)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 642 (729)
++.. . -+...+..+...|.. ..++++|..+|++..+.|. |+ ....|...|.. ..+.++|...++.
T Consensus 311 ~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 5544 2 134444444444443 2255555555555554432 12 22233333332 2345555555555
Q ss_pred HHhCC
Q 004813 643 LVSDS 647 (729)
Q Consensus 643 ~~~~~ 647 (729)
..+.|
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 55543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.8e-14 Score=132.99 Aligned_cols=225 Identities=8% Similarity=0.042 Sum_probs=171.0
Q ss_pred ccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 004813 408 DSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV--LD----SISYS 481 (729)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 481 (729)
..|..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...++.+.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666777777888888888888877766 56777777888888888888888888877764221 11 56777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.+...+...|++++|...|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 8888888888888888888888774 3443 34556677888888888887753 334567777888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
++++|...++++.+..+. +...|..+...+...|++++|.+.++++++.. +.+...+..+..++...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888877544 67788888888888888888888888888753 2246778888888888888888888888
Q ss_pred HHHhC
Q 004813 642 KLVSD 646 (729)
Q Consensus 642 ~~~~~ 646 (729)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88775
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=2.9e-13 Score=140.15 Aligned_cols=374 Identities=9% Similarity=-0.042 Sum_probs=207.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRV---DDSVSILGEMFDLGIQLELSFYTCIIPMLCR 284 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (729)
+...+.+.|++++|+++|++..+.| +...+..|...+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445556667777777776665544 222333344444455555 6677776666643 33444445553444
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 004813 285 EN-----KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLD---DANDILEDMIVIGLTPTDDVFVDIVRGLCEVG 356 (729)
Q Consensus 285 ~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 356 (729)
.+ ++++|++.|++..+.|. ...+..|...|...+..+ ++.+.+......|. ....
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~----------- 144 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAG----------- 144 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHH-----------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHH-----------
Confidence 33 56777777777776543 225555555555544332 34444444444332 2222
Q ss_pred ChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHH----HHHHHhCCCCCcccchHHHHHHHhcC---CHHHHHHH
Q 004813 357 KFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCI----LEKMADRKIADCDSWNIPIRWLCENE---EIRKAYEL 429 (729)
Q Consensus 357 ~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 429 (729)
..+...|...+.++.+... ++..... ++..+..+...|...| +.++|++.
T Consensus 145 --------------------~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 145 --------------------LAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp --------------------HHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 3344445555544333333 3333222 4447777777777777 77888888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHH
Q 004813 430 LGRMVVSSVVPDCATYSAFVLGKCKL----CNYEDALRVFRQVSAQSLVLDSISYSKLVEG-L--CQVEKITEAVEVFCC 502 (729)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~ 502 (729)
|++..+.| .++...+..+...|... +++++|..+|+... .| ++..+..+... + ...+++++|.+.|++
T Consensus 202 ~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 202 MEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 88877776 33444445555555443 67888888888877 32 44555566655 3 457888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHH
Q 004813 503 MSKNGCSLSSSSFNILIYGLCVMR-----KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK----LQRAKDLLVVLAQM 573 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 573 (729)
..+.| +...+..|...|. .| ++++|.+.|++.. .-+...+..|...|.. ..++++|...|++.
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 88765 5667777777776 44 8888888888777 3455666666666665 34888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 574 LVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 574 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
.+.|. ......|...|.. ..+.++|..+|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 349 a~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 349 ARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87663 3344455556653 45788888888888876632 222222233333334455666666665544
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=3.3e-12 Score=123.13 Aligned_cols=224 Identities=11% Similarity=-0.009 Sum_probs=180.7
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ----VEKITEAVEVFCCMSKNGCSLSSSSFN 516 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 516 (729)
+..++..+...+...|++++|...|+...+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777888888888888887773 245667777777887 888888888888888764 677777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 517 ILIYGLCV----MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK----LQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 517 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888888888888888764 66777788888888 888999999998888865 56677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 589 IQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 589 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888877 889999999999988763 56677788888888 899999999999998874 3677888899
Q ss_pred HHHh----cCChhHHHHHHHHHHhCC
Q 004813 661 GLWK----EGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 661 ~~~~----~g~~~~A~~~~~~~~~~g 682 (729)
.|.. .|++++|.+++++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 899999999999998865
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=2.7e-13 Score=125.29 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=132.9
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILI 519 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 519 (729)
++...+..+...+.+.|++++|...|+...+..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34555666666777777777777777777765443 56667777777777777777777777776653 33556667777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 520 YGLCVM-----------RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 520 ~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
.++... |++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 88888888888887764 3456677777788888888888888888888776 577778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
..+|...|++++|...|+++++.. +.+...+..+..++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888887742 2246677777888888888888888777654
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=5.9e-13 Score=126.71 Aligned_cols=212 Identities=10% Similarity=-0.078 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556677777778888888888888877653 3466777788888888888888888888887764 3456777778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (729)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732334 45667778888888899999999988888753 2257778888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 636 VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
|...++++.+. .+.+...+..++..+...|++++|.++++++.+. .|+...+..++
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 99999988876 4567778888888999999999999999998874 46655554443
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=5.6e-11 Score=126.94 Aligned_cols=234 Identities=11% Similarity=-0.027 Sum_probs=158.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 460 DALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAV-EVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 460 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
.+..+|++.+.... .+...|-..+..+...|+.++|. ++|++.... ++.+...|...+....+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666665432 36677777777777778877886 888888764 3445666777777777888888888888887
Q ss_pred HHcCC---------CC------------CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C
Q 004813 539 YSSGT---------SY------------TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ-N 596 (729)
Q Consensus 539 ~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~ 596 (729)
.+... .| ...+|...+....+.|+.+.|..+|.+..+....+....|...+..-.+. +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 75310 12 12357777777777788888888888887751111233343333333333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV--LDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
+.+.|..+|+..++. ..-+...|...+......|+.+.|..+|++......+ .....|...+..-.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 588888888888875 3335566667777777788888888888888876321 1345788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 675 LDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 675 ~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
.+++.+. .|+......++.-|.
T Consensus 564 ~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 564 EKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHh--CCCCcHHHHHHHHhc
Confidence 8888874 566666666666664
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=4.4e-13 Score=129.29 Aligned_cols=238 Identities=13% Similarity=0.012 Sum_probs=136.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 004813 447 AFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL--SSSSFNILIYGLCV 524 (729)
Q Consensus 447 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 524 (729)
.....+...|++++|...|+.+.+..+. +...+..+...|...|++++|...++++.+.+-.+ ....|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555556666666666665554322 33345555556666666666666666665522111 12235556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
.|++++|++.|+++.+.. +.+..++..+...|...|++++|++.|++..+..+. +...|..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666543 234455666666666666666666666666555322 455555555233333477777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCC---hHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHhcCChhHHHH
Q 004813 605 FNVMVKAGLVPD-RETMLSLLHGLADGSQ---LHLVSSGINKLVSDS-EVLD------SSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 605 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
|+++.+. .|+ ...+..+..++...|+ .++|...++++.+.. ..|+ ...|..++..|...|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7776663 233 4555566666666666 666666666665541 1122 2466777888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHH
Q 004813 674 LLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 674 ~~~~~~~~g~~p~~~~~~ 691 (729)
.++++.+. .|+.....
T Consensus 243 ~~~~al~~--~p~~~~a~ 258 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAI 258 (272)
T ss_dssp HHHHHHHH--CTTCHHHH
T ss_pred HHHHHHhc--CccHHHHH
Confidence 88888763 46554433
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=5.2e-13 Score=133.60 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=197.8
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK-ITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
..|..+...+.+.|++++|+..++.+++.... +...|..+...+...|+ +++|+..|++++... +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666677788889999999999998887654 77888888888999996 999999999998864 4477888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE-QNKLKD 600 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 600 (729)
+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998876 567788889999999999999999999999988665 78889999988888 566577
Q ss_pred H-----HHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC------
Q 004813 601 C-----ALFFNVMVKAGLVP-DRETMLSLLHGLADGS--QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG------ 666 (729)
Q Consensus 601 A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 666 (729)
| ++.|++.++. .| +...|..+...+...| ++++|++.++++ +. .+.+...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 5888888874 44 4678888888888888 689999999888 44 4667788899999998874
Q ss_pred --C-hhHHHHHHHHH-HhCCCCCCHHH-HHHHHhhhh
Q 004813 667 --L-TSQASYLLDLM-LGKGWVPDATT-HGLLVGSSV 698 (729)
Q Consensus 667 --~-~~~A~~~~~~~-~~~g~~p~~~~-~~~ll~~~~ 698 (729)
+ .++|+++++++ .+ +.|+..- |..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 2 58999999998 65 4565543 454444443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5.8e-13 Score=128.45 Aligned_cols=245 Identities=7% Similarity=-0.012 Sum_probs=124.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHc
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL--DSISYSKLVEGLCQ 489 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 489 (729)
.....+...|++++|+..|++..+..+. +...+..+...+...|++++|...++.+.+.+..+ ....|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444455555555555555443211 22344444445555555555555555555422111 12234555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555532 2344555556666666666666666666555542 23344444444233333466666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHhccCChHHHHHH
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNK---LKDCALFFNVMVKA-GLVPD------RETMLSLLHGLADGSQLHLVSSG 639 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 639 (729)
|+++.+..+. +...+..+...+...|+ +++|...++++.+. .-.|+ ...|..+...|...|++++|.+.
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666655322 34555555555655555 55666666665543 11122 13555566666667777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHH
Q 004813 640 INKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
++++.+. .|.+...+..+...
T Consensus 244 ~~~al~~-~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 244 WKNILAL-DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHH-CTTCHHHHHHHC--
T ss_pred HHHHHhc-CccHHHHHHHhhhh
Confidence 7776665 24444444444333
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.2e-12 Score=121.93 Aligned_cols=213 Identities=11% Similarity=-0.062 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566667777777777777777777776643 3456677777777777788888888887777654 345667777777
Q ss_pred HHHhc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 556 GLVKL-QRAKDLLVVLAQMLVEGCALD-VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 556 ~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 78888 888888888888777322233 5667777788888888888888888887742 22467777888888888888
Q ss_pred HHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 634 HLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
++|...++++.+. .+ .+...+..+...+...|+.++|..+++.+.+. .|+......++
T Consensus 164 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 8888888888776 34 56777777888888888888888888888753 46665555444
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=7.8e-13 Score=132.35 Aligned_cols=250 Identities=7% Similarity=0.018 Sum_probs=203.6
Q ss_pred cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCN-YEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
...|+.+...+...|++++|++.+++.+...+. +...|..+...+...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 446677778888889999999999998887533 56778888888999996 99999999999987665 7888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCChh
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK-LQRAK 564 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 564 (729)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998864 4578889999999999999999999999999876 4567889999999988 56657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------
Q 004813 565 DL-----LVVLAQMLVEGCALDVEAYCILIQSMSEQN--KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS------ 631 (729)
Q Consensus 565 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 631 (729)
+| ++.+++.++..+. +...|+.+...+...| ++++|.+.+.++ +. -..+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5889998887655 7788988888888888 689999999888 32 2335677888888888864
Q ss_pred ---ChHHHHHHHHHH-HhCCCCCCHHhHHHHHHHHHh
Q 004813 632 ---QLHLVSSGINKL-VSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 632 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 664 (729)
..++|+++++++ .+. -+.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~-DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK-DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHH
Confidence 358999999999 665 34455677777766654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3.3e-13 Score=127.67 Aligned_cols=208 Identities=13% Similarity=0.079 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44456666667777778888888887777643 3456677777777778888888888888777664 345667777778
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (729)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888776433 66777778888888888888888888887752 2356777888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 636 VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
|...++++.+. .+.+..+|..++.+|...|++++|.+.++++.+. .|+....
T Consensus 178 A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~ 229 (243)
T 2q7f_A 178 ALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLA 229 (243)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHH
Confidence 88888888876 3556778888888899999999999999888874 4554443
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=9.7e-11 Score=125.13 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHH
Q 004813 76 LSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR---VNGAMR 152 (729)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 152 (729)
....+..|+...... +.+...|..++..+.+.+.++.+..+|+++...- |.....|...+..-.+.+. ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344454555555543 5788899999999888899999999999988774 7788888888888888888 999999
Q ss_pred HHHHHHhCC-CcccHHhHHHHHHHHHhcCCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh------
Q 004813 153 VLVNMNSGG-FKLSVDVFNVVLGAIVEEKRGF--------ADFVFVYKEMVK-AGI-VPN-VDTLNYLLEVLFE------ 214 (729)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~------ 214 (729)
+|++..... .+|++..|...+....+. ++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 999987653 137888888888776665 543 334467777654 354 443 4577777665432
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 004813 215 ---TNRIESALDQFRRMHK 230 (729)
Q Consensus 215 ---~~~~~~A~~~~~~m~~ 230 (729)
.++++.+..+|++.+.
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3446677788877774
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.9e-11 Score=117.80 Aligned_cols=225 Identities=8% Similarity=0.024 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCcccHHhH
Q 004813 94 HTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVN----HYRVNGAMRVLVNMNSGGFKLSVDVF 169 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 169 (729)
.++.++..+...+...|++++|...|++..+. .+..++..+...|.. .+++++|.++|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677788888888999999999999988873 456788888888888 999999999999998765 56777
Q ss_pred HHHHHHHHh----cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 004813 170 NVVLGAIVE----EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFE 241 (729)
Q Consensus 170 ~~ll~~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 241 (729)
..+-..+.. . +++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVS-QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 777777877 7 99999999999998864 67888888888888 899999999999988865 566777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 004813 242 IVIKGLIA----NSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEEL 313 (729)
Q Consensus 242 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 313 (729)
.+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77788887 889999999999988764 45677788888888 899999999999988864 36677778
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcC
Q 004813 314 INCLCE----NLRLDDANDILEDMIVIG 337 (729)
Q Consensus 314 i~~~~~----~~~~~~a~~~~~~m~~~~ 337 (729)
...|.. .+++++|...|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 899999999999988865
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.2e-13 Score=131.62 Aligned_cols=221 Identities=11% Similarity=-0.093 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVV---PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 496 (729)
.|++++|+..++++.+.... .+..++..+...+...|++++|...|+.+.+.... +...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 45555666666655544211 12344555555555566666666666555554322 455555555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
...|+++.+.. +.+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66555555532 2234555555555555555555555555555432 22222222233334445555555555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV--P-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.. ++...+. ++..+...++.++|.+.++++.+.... | +...+..+...|...|++++|...++++.+.
T Consensus 174 ~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 SD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 21 1222222 333444444445555555444432100 0 0233444444444455555555555544443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=5.8e-13 Score=125.94 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=118.7
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
...|..+...+...|++++|...|+.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344455555555666666666666666554332 45556666666666666666666666665542 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666554 344556666666666677777777777766665332 556666666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 602 ALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
.+.++++.+.. ..+...+..+..+|...|++++|.+.++++.+. .+.+...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI-QPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-CcchHHHHHHH
Confidence 77777766642 224556666777777777777777777777665 23344444443
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=4.3e-12 Score=120.71 Aligned_cols=200 Identities=11% Similarity=-0.007 Sum_probs=138.4
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
..+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44555666666777777777777776665332 56666777777777777777777777776653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776622233 3456666777777777788888777777776433 566777777777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 602 ALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+++++.+.. ..+...+..+...+...|+.++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888777642 235566677777777788888888888877775
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.6e-13 Score=129.38 Aligned_cols=248 Identities=12% Similarity=-0.028 Sum_probs=165.2
Q ss_pred cCCChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 72 NTNDLSSALKIFKWVSIQKRF--QHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
..++++.|+..|+.+.+.... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456788888888888765211 2346677888888888888888888888888775 5677888888888888888888
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMH 229 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 229 (729)
|.+.|+++.+.. +.+...+..+...+.+. |++++|...|+++.+. .|+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888887653 34566777777777777 8888888888888775 3444444444455566688888888887666
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004813 230 KKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQL---ELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPD 306 (729)
Q Consensus 230 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 306 (729)
... +++...+ .++..+...++.++|...++...+..... +..++..+...|.+.|++++|...|++..+.. |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 542 2233333 35566666777777777777766432111 14566677777777777777777777777643 32
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHH
Q 004813 307 ELTYEELINCLCENLRLDDANDIL 330 (729)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~ 330 (729)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 222234555666666666554
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=8.4e-12 Score=116.23 Aligned_cols=202 Identities=12% Similarity=-0.020 Sum_probs=128.4
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344555566666666666666666666654332 45566666666666777777777777666542 3355566666667
Q ss_pred HHhc-CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 522 LCVM-RKVDKAIRLRSLAYSSGTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 522 ~~~~-~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 599 (729)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777665222222 455666666777777777777777777665433 4666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+|.++++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777766422134555666666667777777777777776654
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=8.8e-13 Score=135.86 Aligned_cols=271 Identities=14% Similarity=0.029 Sum_probs=191.4
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhhcCCHHHHHHHHHHHHhC----C-CCCCHHHH
Q 004813 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC----ATYSAFVLGKCKLCNYEDALRVFRQVSAQ----S-LVLDSISY 480 (729)
Q Consensus 410 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 480 (729)
+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++..+. + .......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334555667777777777777777765322 22 35666677777788888888877776543 1 11234556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKN----G-CSLSSSSFNILIYGLCVMRK-----------------VDKAIRLRSLA 538 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~ 538 (729)
..+...|...|++++|...++++.+. + ......++..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777888888888888888877553 1 01124467777788888888 88888888776
Q ss_pred HHc----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 539 YSS----GT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD----VEAYCILIQSMSEQNKLKDCALFFNVM 608 (729)
Q Consensus 539 ~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 608 (729)
.+. +. .....++..+...+...|++++|++.+++..+.... ++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11 112346777888889999999999999888764111 12 236778888999999999999999988
Q ss_pred HHCC--CC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 609 VKAG--LV---PDRETMLSLLHGLADGSQLHLVSSGINKLVSD----S-EVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 609 ~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.+.. .. ....++..+...|...|++++|...+++..+. + ......++..++..|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7641 11 11457778888999999999999999988765 1 1112347888999999999999999999998
Q ss_pred HhC
Q 004813 679 LGK 681 (729)
Q Consensus 679 ~~~ 681 (729)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=9.3e-12 Score=111.75 Aligned_cols=172 Identities=13% Similarity=0.036 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004813 511 SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQ 590 (729)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 590 (729)
+..+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56677777788888888888888888877765 345667777778888888888888888887776544 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
.+...++++.|.+.+.+..+.. +-+...+..+..+|.+.|++++|++.+++..+. .|.+...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887742 224667778888888888888888888888876 35677788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 004813 671 ASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 671 A~~~~~~~~~~g~~p~~~ 688 (729)
|.+.|++.++. .|+..
T Consensus 160 A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHhC--CccCH
Confidence 88888888873 46543
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=8.3e-13 Score=135.79 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=173.7
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCC----cccchHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHhHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIAD----CDSWNIPIRWLCENEEIRKAYELLGRMVVS----SVVP-DCATYSA 447 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ 447 (729)
......+...|++++|...|++.....+.+ ...+..+...+...|++++|...+++.... +-.| ...++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345556677777777777777777665443 245667777777788888888877775432 1111 2345566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHccCC--------------------HHHHHHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQSL-----VLDSISYSKLVEGLCQVEK--------------------ITEAVEVFCC 502 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 502 (729)
+...+...|++++|...++...+... .....++..+...|...|+ +++|...+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 66777777888888877777654310 0013356667777777777 7777777776
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 503 MSKN----GCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-SYT----TSTYTKIMLGLVKLQRAKDLLVVLAQ 572 (729)
Q Consensus 503 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 572 (729)
.... +..+ ...++..+...|...|++++|...++++.+... .++ ..++..+...+...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5432 1011 133566666777777777777777776654310 111 22566666677777777777777776
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 573 MLVEGCA-LD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGL-VPD----RETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 573 ~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
..+.... ++ ..++..+...|...|++++|.+.+++..+... ..+ ..++..+...|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6543111 11 34556666677777777777777776654310 111 34555666666777777777777766
Q ss_pred HHhC----CC-CCCHHhHHHHHHHHHhcCCh
Q 004813 643 LVSD----SE-VLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 643 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 668 (729)
..+. +. +....++..+...+...|+.
T Consensus 333 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 333 HLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 5543 11 11233555566666666655
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=2.4e-12 Score=128.38 Aligned_cols=269 Identities=15% Similarity=0.049 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLV-LDSISYSK 482 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 482 (729)
.....+...|++++|...|+++...... + ...+..+...+...|++++|...++...+. +.. .....+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3345556667777777777766655322 2 245556666677777777777777665432 111 12445666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGC-SLS----SSSFNILIYGLCVMRK--------------------VDKAIRLRSL 537 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 537 (729)
+...+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77777778888888877777654210 011 3366677777777777 7888777776
Q ss_pred HHHc----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 538 AYSS----GT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALD----VEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 538 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
..+. +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6432 11 11234667777888888999999988888765311 111 33677888888999999999999998
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 608 MVKAGL-VPD----RETMLSLLHGLADGSQLHLVSSGINKLVSD----S-EVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 608 ~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
..+... ..+ ..++..+...|...|++++|...++++.+. + ......++..++..|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 875310 112 456777888899999999999999988764 1 111144788899999999999999999999
Q ss_pred HHhC
Q 004813 678 MLGK 681 (729)
Q Consensus 678 ~~~~ 681 (729)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8864
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6e-12 Score=131.19 Aligned_cols=212 Identities=11% Similarity=-0.060 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI-TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
++.+...++....... .+...+..+...+...|++ ++|.+.|+++.+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666555433 3677777888888888888 88888888887753 3457778888888888888888888888
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKL---------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ--------NKLK 599 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~ 599 (729)
++.+.. |+...+..+...+... |++++|++.|++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888764 5567777888888888 8888888888888887544 677888888888888 8899
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 600 DCALFFNVMVKAGLVP----DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
+|++.|++.++. .| +...|..+..+|...|++++|.+.|+++.+. .+.+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998884 44 6788888899999999999999999998887 3556778888999999999988888765
Q ss_pred HH
Q 004813 676 DL 677 (729)
Q Consensus 676 ~~ 677 (729)
++
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=5.2e-12 Score=129.77 Aligned_cols=296 Identities=15% Similarity=0.037 Sum_probs=221.6
Q ss_pred ccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 004813 408 DSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLVL-DSI 478 (729)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 478 (729)
..+......+...|++++|...|++....+.. + ...+..+...+...|++++|...++...+. +..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34556677888999999999999999887433 3 356778888999999999999999887543 2111 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGC-SLS----SSSFNILIYGLCVMRK--------------------VDKAIR 533 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 533 (729)
.+..+...|...|++++|...++++.+... .++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678888999999999999999998865310 011 4477888899999999 999999
Q ss_pred HHHHHHHc----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 004813 534 LRSLAYSS----GTS-YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALD----VEAYCILIQSMSEQNKLKDCAL 603 (729)
Q Consensus 534 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~ 603 (729)
.+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 98887543 111 1234678888999999999999999999876411 122 3377888899999999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHH
Q 004813 604 FFNVMVKAGL-VPD----RETMLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 604 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
.+++..+... .++ ..++..+...|...|++++|...+++..+. +.. ....++..++..|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876310 112 457788889999999999999999998765 111 115578899999999999999999
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHhhhhhcchhh
Q 004813 674 LLDLMLGK----GWVP-DATTHGLLVGSSVGEEIDS 704 (729)
Q Consensus 674 ~~~~~~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 704 (729)
.+++..+. |..+ ...++..+...+...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99987753 2122 1344566666777777654
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2.9e-12 Score=132.03 Aligned_cols=270 Identities=10% Similarity=-0.006 Sum_probs=204.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----ccchHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHhHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADC----DSWNIPIRWLCENEEIRKAYELLGRMVVS----S-VVPDCATYSA 447 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~ 447 (729)
..+...+...|++++|...|+++.+..+.+. ..|..+...+...|++++|...+++.... + .......+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4456677888899999999988888765543 46788888899999999999999887643 1 1223456777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQ----S-LVLDSISYSKLVEGLCQVEK-----------------ITEAVEVFCCMSK 505 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~ 505 (729)
+...+...|++++|...+++..+. + .......+..+...|...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888889999999999999887653 1 11234567888888999999 9999999888754
Q ss_pred C----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 506 N----GCS-LSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-YT----TSTYTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 506 ~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
. +.. ....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 111 12347788888999999999999999988764211 11 23678888999999999999999998876
Q ss_pred cCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 576 EGCA-L----DVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 576 ~~~~-p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
.... . ...++..+...|...|++++|.+++++..+. +..+ ....+..+...|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4211 1 1467788889999999999999999988764 1111 134777888999999999999999999887
Q ss_pred C
Q 004813 646 D 646 (729)
Q Consensus 646 ~ 646 (729)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 5
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=2.2e-10 Score=112.30 Aligned_cols=218 Identities=7% Similarity=-0.061 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLC-------QVEKI-------TEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (729)
+.|..+|+++....+. +...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778777765433 6667777766665 34775 8899999998873113356688888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYT-TS-TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-EQNKLKDC 601 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A 601 (729)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+..+. +...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998875 343 33 7888888888899999999999998876443 4455544333322 36999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 602 ALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-EVL--DSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.++|++.++.. +-+...|..++..+.+.|+.++|+.+|+++.+.. .+| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988752 2257788888888999999999999999999862 343 4668888999999999999999999998
Q ss_pred HhC
Q 004813 679 LGK 681 (729)
Q Consensus 679 ~~~ 681 (729)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=5.8e-11 Score=106.52 Aligned_cols=166 Identities=8% Similarity=-0.023 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...|..+...|.+.|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...+..+.... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444455555555555555555555554432 2234444555555555555555555555544433 2233344444444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+...++++.|.+.+.+.....+. +...+..+...|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555444322 44445555555555555555555555555431 11344455555555555555555
Q ss_pred HHHHHHHHhC
Q 004813 637 SSGINKLVSD 646 (729)
Q Consensus 637 ~~~~~~~~~~ 646 (729)
++.|+++.+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5555555543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=2.5e-11 Score=123.47 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=176.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQ----SLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNG--C----SLSSSSFN 516 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~ 516 (729)
....+...|++++|...++...+. +-.+ ...++..+...|...|++++|...+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677889999999999998764 1111 34578888999999999999999999886531 1 11235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTS-YT----TSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----GC-ALDVEAYC 586 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~ 586 (729)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|++.+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988754211 11 247788999999999999999999998872 22 22466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKA----GLVPDRETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+...|...|++++|.+.+++..+. +-......+..+...|...|+ +++|+.++++... .+.....+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8999999999999999999998764 111112335667788889999 7777777776621 223345778899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004813 660 NGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=4.6e-12 Score=124.78 Aligned_cols=237 Identities=12% Similarity=0.008 Sum_probs=135.7
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQ-------SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN------GC- 508 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~- 508 (729)
.++..+...+...|++++|..+++.+.+. ........+..+...|...|++++|...++++... +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555556666666666666555542 11223444555666666666666666666666542 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS------GTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----- 576 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 576 (729)
+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|+++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 123445566666677777777777777666543 1112 2345666777777777777777777777654
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHhccCChHHHHHHH
Q 004813 577 -GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKA-------GLVPDR-------ETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 577 -~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
+..| ...++..+...|...|++++|.++++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1122 2345667777788888888888888877752 111111 12222333344566667777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 641 NKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..... .+....+|..++.+|.+.|++++|.+++++..+
T Consensus 268 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777665 345667889999999999999999999998875
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=2.2e-10 Score=112.25 Aligned_cols=217 Identities=8% Similarity=-0.011 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-------hcCCH-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 004813 424 RKAYELLGRMVVSSVVPDCATYSAFVLGKC-------KLCNY-------EDALRVFRQVSA-QSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 488 (729)
++|..+|++.+... +.+...|..+...+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34555555554432 123444444444433 34554 778888887777 3332 5667777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCChhH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLS-SS-SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV-KLQRAKD 565 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 565 (729)
+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|+++.+.. +.+...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888774 343 33 67777777888888888888888887754 233444443333322 3688888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LVP--DRETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
|.++|++.++..+. +...|..++..+.+.|++++|..+|++.++.. +.| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776443 67778888888888888888888888888752 344 356777788888888888888888888
Q ss_pred HHhC
Q 004813 643 LVSD 646 (729)
Q Consensus 643 ~~~~ 646 (729)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=4.2e-11 Score=119.33 Aligned_cols=267 Identities=10% Similarity=-0.034 Sum_probs=173.1
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCHHHHHH
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHT----ADTYCKMILKLGLAGNVEEMEGLCQNMVKE----R-YPNVREALIS 136 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 136 (729)
....+...|+++.|+..|+.+.+.. +.+ ...+..+...+...|++++|...+++..+. + .+....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4556677888999999998887763 233 356778888888889999888888876543 1 1223567778
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC----CCc-ccHHhHHHHHHHHHhcCCC--------------------hhHHHHHHH
Q 004813 137 LVFSFVNHYRVNGAMRVLVNMNSG----GFK-LSVDVFNVVLGAIVEEKRG--------------------FADFVFVYK 191 (729)
Q Consensus 137 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~--------------------~~~a~~~~~ 191 (729)
+...+...|++++|.+.+++..+. +.. .....+..+...+... |+ ++.|...++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888888888888888887432 111 1133566666677777 77 778877777
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 192 EMVKA----GI-VPNVDTLNYLLEVLFETNRIESALDQFRRMHKK----GCC-PNSRTFEIVIKGLIANSRVDDSVSILG 261 (729)
Q Consensus 192 ~~~~~----g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (729)
+..+. +. ......+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76432 11 112345667777777888888888888776542 100 012356666777777788888877777
Q ss_pred HHHHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 262 EMFDLGIQ-LE----LSFYTCIIPMLCRENKLEEAIRLFKMMRALD----L-MPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 262 ~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
+..+.... .+ ..++..+...|...|++++|...+++..+.. - .....++..+...+...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76542110 11 3456667777777777777777777665421 0 0013355666677777777777777777
Q ss_pred HHHH
Q 004813 332 DMIV 335 (729)
Q Consensus 332 ~m~~ 335 (729)
+..+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=3.8e-11 Score=125.14 Aligned_cols=215 Identities=13% Similarity=0.004 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY-EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
+++++..+++..... ..+...+..+...+...|++ ++|...|++..+.... +...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 23555666666666666776 7777777666665433 46666667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------CChh
Q 004813 502 CMSKNGCSLSSSSFNILIYGLCVM---------RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL--------QRAK 564 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 564 (729)
++.+. .|+...+..+...|... |++++|++.|+++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77664 35566666666667666 77777777777776654 34456666677777666 7777
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 565 DLLVVLAQMLVEGCA--LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
+|++.|++..+..+. -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777765331 266677777777777777777777777777642 11345666677777777777777766554
Q ss_pred H
Q 004813 643 L 643 (729)
Q Consensus 643 ~ 643 (729)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.4e-11 Score=118.52 Aligned_cols=177 Identities=10% Similarity=0.097 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-------CCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 004813 130 VREALISLVFSFVNHYRVNGAMRVLVNMNSG-------GFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNV 202 (729)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 202 (729)
...++..+...+...|++++|..+|+++.+. ..+.....+..+...+... |++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH-----
Confidence 3455556666666666666666666665431 1122233344444444444 55555555555444320
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHhH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL------GI-QLELSFY 275 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~ 275 (729)
+............++..+...+...|++++|...++++.+. +. ......+
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00000000111233444444444445555554444444432 11 1123345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 276 TCIIPMLCRENKLEEAIRLFKMMRAL------DLMP-DELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
..+...+...|++++|.++|+++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666665542 1112 234566666677777777777777777664
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=3.1e-10 Score=115.34 Aligned_cols=161 Identities=9% Similarity=-0.071 Sum_probs=88.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-----HHhHH
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALD-LMP----DELTYEELINCLCENLRLDDANDILEDMIVIGL-TPT-----DDVFV 346 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~-~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-----~~~~~ 346 (729)
....+...|++++|...|++..+.- -.+ ...+|..+...|...|++++|...+++..+.-. .++ ..++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~- 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH- 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH-
Confidence 4556677888999988888876531 012 235677788888888999999888888765311 111 1122
Q ss_pred HHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC------CcccchHHHHHHHhc
Q 004813 347 DIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA------DCDSWNIPIRWLCEN 420 (729)
Q Consensus 347 ~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 420 (729)
..+...|...|++++|...|++..+.... ...++..+...|...
T Consensus 188 ------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 188 ------------------------------SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp ------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 45555566666666666666554432110 112444455555555
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004813 421 EEIRKAYELLGRMVV-----SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVS 469 (729)
Q Consensus 421 ~~~~~a~~~~~~~~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 469 (729)
|++++|...+++... ........++..+...+.+.|++++|...+++..
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555443 1101123344444445555555555555554443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=6.6e-10 Score=112.48 Aligned_cols=264 Identities=11% Similarity=-0.072 Sum_probs=129.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH----hHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHH
Q 004813 417 LCENEEIRKAYELLGRMVVSSVVPDCA----TYSAFVLGKCKLCNYEDALRVFRQVSAQSL-VLD----SISYSKLVEGL 487 (729)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 487 (729)
+...|++++|...+++........+.. .+..+...+...|++++|...+.+...... ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344555555555555554432211211 233344445555666666666555443200 001 12234455555
Q ss_pred HccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHhHHHHHHH
Q 004813 488 CQVEKITEAVEVFCCMSKN----GCS--L-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY----TTSTYTKIMLG 556 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~ 556 (729)
...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5666666666666655432 111 1 12334445556666666666666666655432111 12345555556
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALD--VEAYC----ILIQSMSEQNKLKDCALFFNVMVKAGLVP---DRETMLSLLHGL 627 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~ 627 (729)
+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 6666666666666666554311111 11111 12233556666666666666655432111 122344555666
Q ss_pred hccCChHHHHHHHHHHHhC----CCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 628 ADGSQLHLVSSGINKLVSD----SEVLDS-SMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...|++++|...+++.... +.+++. ..+..+..++...|+.++|.+.+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666666665443 111122 2455556666666777776666666543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=3.6e-10 Score=114.55 Aligned_cols=230 Identities=10% Similarity=-0.021 Sum_probs=173.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQSL-VL----DSISYSKLVEGLCQVEKITEAVEVFCCMSKNG--C---SL-SSSSFN 516 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~ 516 (729)
....+...|++++|...|+...+... .+ ...++..+...|...|+++.|...+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999876411 12 24567888889999999999999999886531 1 11 245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSG----TS-YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLV-----EGCALDVEAYC 586 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 586 (729)
.+..+|...|++++|.+.|++..+.. .. ....++..+...|...|++++|++.+++..+ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 88999999999999999998887531 11 1234677888999999999999999999887 4333 367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGL---VPD-RETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+...|.+.|++++|.+.+++..+... .|. ...+..+...|...++ +.+|+..+++... .+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHH
Confidence 899999999999999999999987411 122 3455666667778888 7777777776321 222344677899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004813 660 NGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=3.6e-10 Score=101.36 Aligned_cols=165 Identities=9% Similarity=0.016 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSM 592 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 592 (729)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345555666666777777777776665543 334566666777777777777777777777665332 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 593 SEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCHHHHH
Confidence 77888888888888777652 335667777777888888888888888887776 3556778888888888888888888
Q ss_pred HHHHHHHhC
Q 004813 673 YLLDLMLGK 681 (729)
Q Consensus 673 ~~~~~~~~~ 681 (729)
+.++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887753
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=2.3e-10 Score=123.90 Aligned_cols=164 Identities=11% Similarity=0.034 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 591 (729)
...++.|...|.+.|++++|++.|+++.+.. +-+..++..+..+|.+.|++++|++.|++.++..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4456666666666666666666666666553 233555666666666666666666666666665433 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
|...|++++|++.|++.++. .| +...|..+..+|...|++++|++.++++.+. .+.+...|..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666663 33 3556666666666667777777776666665 24455666667777777777776
Q ss_pred HHHHHHHHHh
Q 004813 671 ASYLLDLMLG 680 (729)
Q Consensus 671 A~~~~~~~~~ 680 (729)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=4.8e-10 Score=104.47 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIM 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 554 (729)
.|+..+......+...|++++|...|++..+..-+++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36678888899999999999999999999886532677788789999999999999999999999875 34567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDV-------EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD---RETMLSLL 624 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 624 (729)
..+...|++++|+..+++..+..+. +. ..|..+...+...|++++|++.|+++++ ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 9999999999999999999987543 44 4577788888999999999999999987 4565 45667777
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 695 (729)
.+|...| ...++++...+ ..+...|.... ....|.+++|...+++..+ +.|+......++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 7775443 44556665552 33444444333 3455778999999999998 4677665554444
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.2e-09 Score=110.67 Aligned_cols=231 Identities=10% Similarity=-0.026 Sum_probs=168.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CC-C-CCHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSV-VPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SL-V-LDSISY 480 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~ 480 (729)
.....+...|++++|...|++...... .++ ..++..+...|...|+++.|...+.+..+. +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556678899999999988765421 122 346777788889999999999998887653 11 1 124567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKN----GCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYS-----SGTSYTTSTY 550 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 550 (729)
+.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|.+.+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888999999999999999888653 1111 234677888899999999999999998876 33 2336678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEG----CALDVEAYCILIQSMSEQNK---LKDCALFFNVMVKAGLVPD-RETMLS 622 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~-~~~~~~ 622 (729)
..+...+.+.|++++|...+++..+.. .......+..+...+...++ +.+|+.++++ .+..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 888999999999999999999988752 11123455666666777788 7777777765 222333 345667
Q ss_pred HHHHHhccCChHHHHHHHHHHHhC
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+...|...|++++|...+++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999999988653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.6e-09 Score=97.07 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=77.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 2234444444444445555555555554444432 2234444444455555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSG 639 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (729)
.|++++|.+.++++.+..+. +...+..+...+...|++++|.++++++.+.. ..+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555444222 44445555555555555555555555555432 12344555555555555555555555
Q ss_pred HHHHHh
Q 004813 640 INKLVS 645 (729)
Q Consensus 640 ~~~~~~ 645 (729)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2e-09 Score=100.21 Aligned_cols=207 Identities=10% Similarity=-0.049 Sum_probs=159.8
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILI 519 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 519 (729)
.|+..+......+...|++++|...|+...+....++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888888999999999999999999987654677787779999999999999999999999864 34567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTT-------STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD---VEAYCILI 589 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 589 (729)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++.++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999999875 3344 45778888899999999999999999876 454 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+|... +..+++++...+ ..+...|.... ....+.+++|+..+++..+. .|.+..+...+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l-~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL-SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHH
Confidence 777654 444556665543 22344444433 33456789999999999987 344554544443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=1e-09 Score=118.79 Aligned_cols=164 Identities=17% Similarity=0.106 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...|+.|...|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|++.|+++.+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666666666666666666665542 2235556666666666666666666666666543 2335556666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 635 (729)
|...|++++|++.|++.++..+. +...|+.+..+|...|++++|++.|++.++. .|+ ...+..+..+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666665433 4556666666666666666666666666653 333 4556666666666666666
Q ss_pred HHHHHHHHHh
Q 004813 636 VSSGINKLVS 645 (729)
Q Consensus 636 A~~~~~~~~~ 645 (729)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=8.9e-09 Score=104.11 Aligned_cols=233 Identities=11% Similarity=0.028 Sum_probs=132.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCcc-cHHhHHHH
Q 004813 102 MILKLGLAGNVEEMEGLCQNMVKERYPNVR----EALISLVFSFVNHYRVNGAMRVLVNMNSG----GFKL-SVDVFNVV 172 (729)
Q Consensus 102 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l 172 (729)
....+...|++++|...+++........+. .++..+...+...|++++|.+.+++.... +... ....+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334455566666666666665554322221 14455556666667777777776666332 1110 11223444
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--ChhhHH
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKA----GIV--P-NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCC--P--NSRTFE 241 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~ 241 (729)
...+... |++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 100 a~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 4555556 7777777777766542 111 2 2344555666777777888877777776542111 1 124556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHH
Q 004813 242 IVIKGLIANSRVDDSVSILGEMFDLGIQLEL-SFYT-----CIIPMLCRENKLEEAIRLFKMMRALDLMPD---ELTYEE 312 (729)
Q Consensus 242 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ 312 (729)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6667777778888888877777643111111 1111 233446678888888888877765432111 224556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 004813 313 LINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
+...+...|++++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777788888888888877654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=2.4e-10 Score=110.49 Aligned_cols=203 Identities=12% Similarity=-0.014 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKN------GC-SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS------G- 542 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~- 542 (729)
..++..+...|...|++++|...++++.+. +- +....++..+...|...|++++|...++++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334455555555555555555555555432 11 112334555555666666666666665555443 1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 004813 543 TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE------GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKA---- 611 (729)
Q Consensus 543 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 611 (729)
.+....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|.++++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0122345566666667777777777777666553 1111 2455667777777788888888887777652
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCC------hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 612 ---GLVPD-RETMLSLLHGLADGSQ------LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 612 ---~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...+. ...+..+...+...+. +..+...++..... .+....++..++..|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122 1223333333322222 22333333322221 233455788899999999999999999998875
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=3.8e-08 Score=92.89 Aligned_cols=178 Identities=14% Similarity=0.115 Sum_probs=94.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 496 AVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQML 574 (729)
Q Consensus 496 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 574 (729)
|...|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444444555666666666666666666554432 1234455555666666666666666666665
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 575 VEGCAL-----DVEAYCILIQSM--SEQN--KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 575 ~~~~~p-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 233334444442 2223 666666666666542 34422223333356666666666666665443
Q ss_pred CC---------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 646 DS---------EVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 646 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.. -+.++.++..+|......|+ +|.++++++++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 13345555455555555565 56666666665
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=8.8e-09 Score=99.81 Aligned_cols=129 Identities=6% Similarity=-0.065 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----
Q 004813 549 TYTKIMLGLVKL-QRAKDLLVVLAQMLVEGCAL-D----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----- 617 (729)
Q Consensus 549 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----- 617 (729)
+++.+..+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 445555566664 66666666666655431110 1 234566666677777777777777776664222111
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 004813 618 -ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS------SMYNILINGLW--KEGLTSQASYLLDLML 679 (729)
Q Consensus 618 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 679 (729)
..|..+..++...|++++|+..+++..+. .|+. ..+..++..+. ..+++++|++.|+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 14555666666677777777777776654 1211 12334455553 3455677777766654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=2.3e-09 Score=103.52 Aligned_cols=204 Identities=12% Similarity=0.004 Sum_probs=107.5
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------C-
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQ------SL-VLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN------G- 507 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~- 507 (729)
..++..+...+...|++++|...++.+.+. +- .....++..+...|...|++++|.+.++++... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555566666666666666666665543 11 113345566666666667777776666666543 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 004813 508 CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS------GTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE---- 576 (729)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 576 (729)
.+....++..+...|...|++++|...++++.+. ...| ...++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0123445666666667777777777777666553 1112 2345666667777777777777777766653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-C-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 ---GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVK---A-G-LVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ---~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
...+ ....|..+...+...+....+.. +..+.. . + ..| ....+..+...|...|++++|..++++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 12223333333333222222221 111111 1 1 111 2345667777778888888888888777653
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=1.5e-07 Score=90.03 Aligned_cols=223 Identities=9% Similarity=-0.013 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE--KITEAVEVFCCMSKNGCSLSSSSFNILIYGL----CVM---RKV 528 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 528 (729)
.++|+..++.++..++. +...|+.-...+...| ++++++++++.+.... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45788888888776554 5566777777777777 8888888888887754 44566666554444 444 678
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHH
Q 004813 529 DKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAK--DLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK------LKD 600 (729)
Q Consensus 529 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 600 (729)
++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++++.++. |...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888765 567778888888888888888 889999999888766 88888877777777776 888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 601 CALFFNVMVKAGLVPDRETMLSLLHGLADGSQL-HLVSSGINKLVSDS--EVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
+++.+++++..... |...|+.+...+.+.|+. +.+.....++.+.+ .+.++..+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999988886433 677888888788777774 44556666665542 245777888999999999999999999999
Q ss_pred HHhCCCCCC
Q 004813 678 MLGKGWVPD 686 (729)
Q Consensus 678 ~~~~g~~p~ 686 (729)
+.+. +.|.
T Consensus 284 l~~~-~Dpi 291 (306)
T 3dra_A 284 LKSK-YNPI 291 (306)
T ss_dssp HHHT-TCGG
T ss_pred HHhc-cChH
Confidence 8863 3443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=7.5e-09 Score=100.29 Aligned_cols=167 Identities=8% Similarity=-0.161 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CC--CHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC---SL--SSS 513 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~ 513 (729)
.|......|...|++++|...|.+..+. +-.+ ...+|+.+..+|.+.|++++|+..+++..+... .+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555555666666666666555432 1111 134555566666666666666666665544210 00 023
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----
Q 004813 514 SFNILIYGLCVM-RKVDKAIRLRSLAYSSGTSY-T----TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV----- 582 (729)
Q Consensus 514 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----- 582 (729)
+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555566654 66666666666655432100 0 234555556666666666666666666654322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 583 -EAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 583 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..|..+..++...|++++|...|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344555555666666666666666554
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1.4e-07 Score=89.07 Aligned_cols=209 Identities=10% Similarity=0.044 Sum_probs=134.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF 183 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (729)
+-..-.|.+..++.-.. +............+.++|...|++... ..-.|....+..+. .+... +
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~-~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDT-K-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTT-T--
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhcc-c--
Confidence 44455677777766322 222223334555566777777776642 11123332333222 22232 2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 184 ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGC-CPNSRTFEIVIKGLIANSRVDDSVSILGE 262 (729)
Q Consensus 184 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (729)
+...|+++.+.+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777777654 45566666788888888999999999988766543 12556777788888889999999999988
Q ss_pred HHHCCCCC-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 263 MFDLGIQL-----ELSFYTCIIPML--CREN--KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 263 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
|.+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764 34 345555566553 3334 8999999999987653 55334445555888999999999999876
Q ss_pred HH
Q 004813 334 IV 335 (729)
Q Consensus 334 ~~ 335 (729)
.+
T Consensus 238 ~~ 239 (310)
T 3mv2_B 238 LS 239 (310)
T ss_dssp HS
T ss_pred HH
Confidence 65
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.9e-08 Score=84.35 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3455666666777777777777777665433 56666667777777777777777777777643 234566677777777
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 788888888888777765 345667777788888888888888888888775
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.3e-08 Score=91.25 Aligned_cols=136 Identities=10% Similarity=-0.000 Sum_probs=92.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADG 630 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 630 (729)
.+..+|.+.|++++|+..|++.++..+. +...|..+..++...|++++|.+.|++.++. .| +...+..+..+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 3677788888888888888888877544 6777888888888888888888888888874 34 466777777776555
Q ss_pred CC--hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 631 SQ--LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 631 g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
|+ .+.+...++.... ..|....+..+..++...|++++|.+.|++.++ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 43 3444555555432 222233455566777778888888888888886 467765554443
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=1.2e-06 Score=90.90 Aligned_cols=125 Identities=8% Similarity=-0.066 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE-QNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
..|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.- .-+...+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666777899999999988 32 22344555433322222 336899999999988752 2234556667777
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778899999999999973 2577888888888888999999998888774
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=2.7e-08 Score=94.68 Aligned_cols=211 Identities=7% Similarity=-0.092 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS---SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS--YTTSTY 550 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 550 (729)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+++.+.... .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45555666666777777777777777777642 222 456666777777777777777777777765321 113445
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 551 TKIMLGLVK--------LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 551 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
..+..++.. .|++++|+..|+++++..+. +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 556666666 67777777777777665322 1111111100 0000000 0012356
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCHH-
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVL---DSSMYNILINGLWKE----------GLTSQASYLLDLMLGKGWVPDAT- 688 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~- 688 (729)
+...|...|++++|+..++++.+.. +. ....+..++.+|... |++++|.+.++++.+. .|+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 6777888888888888888888762 22 244677788888766 8888999999988874 46542
Q ss_pred ---HHHHHHhhhhhcchhhhhhhc
Q 004813 689 ---THGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 689 ---~~~~ll~~~~~~~~~~~~~~~ 709 (729)
....+-..+...+..++...+
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 233344444455555544433
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=2.7e-08 Score=94.74 Aligned_cols=184 Identities=9% Similarity=-0.006 Sum_probs=132.3
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHH
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLD---SISYSKLVEGLCQVEKITEAVEVFCCMSKNGC--SLSSSS 514 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 514 (729)
.+...+......+.+.|++++|...|+.+.+..+. + ...+..+..+|.+.|++++|...|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35667777788899999999999999999987443 3 67788899999999999999999999988521 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 515 FNILIYGLCV--------MRKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 515 ~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
+..+..++.. .|++++|+..|+++.+.. |+. .....+. .+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 7778888888 999999999999998864 332 2222211 11111110 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcc----------CChHHHHHHHHHHHhC
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVPD----RETMLSLLHGLADG----------SQLHLVSSGINKLVSD 646 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 646 (729)
..+...|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|...++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 55677788888888888888888774 233 34566667777655 7788888888888876
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=3.1e-07 Score=87.86 Aligned_cols=233 Identities=9% Similarity=0.015 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hcc---CCH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC--NYEDALRVFRQVSAQSLVLDSISYSKLVEGL----CQV---EKI 493 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 493 (729)
.++|+++++.++...+. +...|+.--..+...+ ++++++..++.+....++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 45677777777665322 3445555555666666 788888888887776554 445555444444 334 678
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC------hhH
Q 004813 494 TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVD--KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR------AKD 565 (729)
Q Consensus 494 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 565 (729)
++++++++++.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.++ +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888764 557778877777777778777 8888888888776 4667777777777777666 888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL-KDCALFFNVMVKAG--LVPDRETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
+++.+++++...+. |...|+.+...+.+.|+. +++.++..++.+.+ -..+...+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 89999988888766 888888888888887774 44556777666532 123667888888889899999999999999
Q ss_pred HHhCCCCCCHHhHHHHHH
Q 004813 643 LVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~ 660 (729)
+.+.--|.....|+..++
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 987423445556665543
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=6.3e-07 Score=93.07 Aligned_cols=125 Identities=5% Similarity=-0.106 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL-QRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 591 (729)
.+|...+..+.+.++.+.|..+|+++ ... ..+...|......-... ++.+.|..+|+...+.-.. +...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 34555555555566677777777766 211 12233333222222222 2577777777777665222 33445556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
....|+.+.|..+|+++. -....|...+..-...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777777777762 1355666666655566777777776666654
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=4.1e-08 Score=89.53 Aligned_cols=136 Identities=11% Similarity=-0.023 Sum_probs=90.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++..+. +...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 7777888888888888888887765 445677778888888888888888888888877544 66777777777765543
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 598 --LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 598 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+.+...+..... ..|....+.....++...|++++|+..|+++.+. .|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 3444555555432 2222223344455566678888888888888875 55655444443
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=5.2e-08 Score=81.58 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=50.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33344444444444444444443321 1233333444444444444444444444443332 122333333444444444
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
++++|.+.++++.+..+. +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444333211 23333334444444444444444444433
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=6.2e-09 Score=89.13 Aligned_cols=142 Identities=10% Similarity=-0.062 Sum_probs=75.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 600 (729)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++..+. +...|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3344455556655555554321 112334445555666666666666666666655433 55566666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHH-HHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004813 601 CALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSG-INKLVSDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 601 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
|...|++.++. .| +...+..+...|.+.|+.++|.+. ++++.+. .|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 66666666653 23 345555566666666665544433 3555554 24445555555555555443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=1.1e-07 Score=86.77 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----ChhHHHHHH
Q 004813 495 EAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ----RAKDLLVVL 570 (729)
Q Consensus 495 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 570 (729)
+|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555566666666666666666666666543 34445555555555 4 666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCChHHHHHHHH
Q 004813 571 AQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLV-PDRETMLSLLHGLAD----GSQLHLVSSGIN 641 (729)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 641 (729)
++..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45555566666655 66777777777777664321 014556666666665 667777777777
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 004813 642 KLVSDSEVLDSSMYNILINGLWKE-G-----LTSQASYLLDLMLGKG 682 (729)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 682 (729)
+..+. +.+...+..|...|... | ++++|.++|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77765 23445666666666543 2 7777777777777665
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.2e-08 Score=111.44 Aligned_cols=173 Identities=8% Similarity=-0.062 Sum_probs=109.1
Q ss_pred hhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 453 CKLCNYEDALRVFRQVS--------AQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (729)
...|++++|.+.+++.. +... .+...+..+...+...|++++|.+.|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 3322 245566666667777777777777777776642 3355666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
.|++++|++.|+++.+.. +.+...+..+..++.+.|++++ ++.|++.++.++. +...|..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776654 3345566666677777777777 7777777666443 556666677777777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 004813 605 FNVMVKAGLVPD-RETMLSLLHGLADGSQ 632 (729)
Q Consensus 605 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 632 (729)
|+++.+ +.|+ ...+..+..++...++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 776665 3444 3455556666655444
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.5e-07 Score=87.07 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--Hh
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT--ST 549 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 549 (729)
+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+....... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34455566677888899999999999888752 32 356777888888889999999988888876422111 13
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE----------- 618 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----------- 618 (729)
+..+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+..
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH
Confidence 44444444432100 00 00111111222234444444444444432 12210
Q ss_pred -------HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 619 -------TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS---SMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 619 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
....+...|.+.|++++|+..++++.+. .|.++ ..+..++.+|.+.|++++|.+.++.+...+
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1134566788999999999999999987 33333 568889999999999999999999998753
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=1.2e-07 Score=103.42 Aligned_cols=174 Identities=8% Similarity=-0.118 Sum_probs=126.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 418 CENEEIRKAYELLGRMV--------VSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 418 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
...|++++|++.+++.. +.. ..+...+..+...+...|++++|...|+.+.+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888877 332 224566777777888888888888888888876544 67777888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887753 3356777788888888888888 88888887765 44566778888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
|++..+.++. +...|..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8887765322 35566666666655444
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=6.2e-08 Score=94.57 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK-LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVE 498 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 498 (729)
.|++++|.+++++..+.... . +.+ .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45666677766665543111 0 111 35666666666544 334556677777777
Q ss_pred HHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHhcCChhHHHH
Q 004813 499 VFCCMSKNGC---SL--SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT---SYT--TSTYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 499 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~ 568 (729)
.|.+...... .+ -..+|+.+...|...|++++|+..|++..+... .+. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766644210 01 133566677777777788877777777654311 111 3456667777777 88888888
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHH
Q 004813 569 VLAQMLVEGCAL-----DVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 569 ~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
.|++.++..... ...++..+...|...|++++|++.|++.++. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888876641110 1456777888888899999999999888763 11111 2255666677777899999999
Q ss_pred HHHHHHhCCCCC--CH---HhHHHHHHHHHhcCChhHHHHH
Q 004813 639 GINKLVSDSEVL--DS---SMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 639 ~~~~~~~~~~~~--~~---~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
.+++.. . .+. +. .....++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~-~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S-IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T-STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C-CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999888 5 121 11 2344555555 56777666553
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=2.5e-08 Score=85.29 Aligned_cols=142 Identities=6% Similarity=-0.109 Sum_probs=86.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR 562 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 562 (729)
...+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|+++.+.. +.+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445566677777777666543 22 23345556667777777777777777776654 3456667777777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 004813 563 AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF-FNVMVKAGLVPD-RETMLSLLHGLADGS 631 (729)
Q Consensus 563 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g 631 (729)
+++|+..|++.++..+. +...|..+...|.+.|++++|.+. +++.++. .|+ ...|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 77777777777766443 566677777777777777665544 4666653 343 445555555554444
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=4.3e-07 Score=82.94 Aligned_cols=141 Identities=14% Similarity=-0.019 Sum_probs=63.2
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 004813 426 AYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE----KITEAVEVFC 501 (729)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 501 (729)
|++.|++..+.| +...+..+...|...+++++|...|+...+.| ++..+..|...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444332 33444444444444555555555555554432 33344444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHh----cCChhHHHHHHHH
Q 004813 502 CMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSGTS-YTTSTYTKIMLGLVK----LQRAKDLLVVLAQ 572 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 572 (729)
+..+.| +...+..|...|.. .+++++|++.|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 34444444444443 44555555555555443311 013344444444444 3444455555544
Q ss_pred HHHc
Q 004813 573 MLVE 576 (729)
Q Consensus 573 ~~~~ 576 (729)
..+.
T Consensus 155 A~~~ 158 (212)
T 3rjv_A 155 SSSL 158 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4443
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=1.1e-07 Score=91.63 Aligned_cols=163 Identities=12% Similarity=-0.015 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCI-LIQ 590 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~ 590 (729)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.... |+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3344445555555566666666655555543 2334455555555566666666666665554442 23222211 122
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCh
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD--SSMYNILINGLWKEGLT 668 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 668 (729)
.+...++.++|.+.+++..+.. +.+...+..+...|...|++++|+..++++.+.. +.+ ...+..++..|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCC
Confidence 2444555555666666665532 1235555666666666666666666666666542 112 44566666666666766
Q ss_pred hHHHHHHHHHH
Q 004813 669 SQASYLLDLML 679 (729)
Q Consensus 669 ~~A~~~~~~~~ 679 (729)
++|...+++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666544
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=9.9e-08 Score=84.33 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH-HH
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA-IV 177 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 177 (729)
+......+.+.|++++|...+++..+.. |.+...+..+..++...|++++|...|+++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445556667777777777777666554 5566677777777777777777777777765432 233322221111 11
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHH
Q 004813 178 EEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP-NSRTFEIVIKGLIANSRVDDS 256 (729)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a 256 (729)
.. ++...+...|++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 86 ~~-~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQ-AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HH-HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hh-cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22 23334667777776653 2256677777777777888888888887777653222 244666777777777777777
Q ss_pred HHHHHHHH
Q 004813 257 VSILGEMF 264 (729)
Q Consensus 257 ~~~~~~~~ 264 (729)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=8.8e-08 Score=93.49 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=157.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ-VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
.|++++|.+++++..+.... . +.+ .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46778888888877653211 1 122 57888888888776 346778899999999
Q ss_pred HHHHHHHcCC---CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004813 534 LRSLAYSSGT---SY--TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG--C-ALD--VEAYCILIQSMSEQNKLKDCAL 603 (729)
Q Consensus 534 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~~~~~~A~~ 603 (729)
.|.++.+... .+ -..+|+.+...|...|++++|+..|++.++.- . .+. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9988765321 11 13478888899999999999999999887641 1 111 3567788888988 99999999
Q ss_pred HHHHHHHCCCC---C--CHHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHhcCChhHHHH
Q 004813 604 FFNVMVKAGLV---P--DRETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVLD-SSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 604 ~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
.|++.++.... + ...++..+...|...|++++|+..+++..+. +..+. ...+..++.++...|++++|.+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998864111 1 1457888899999999999999999998875 11111 2366778888888999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHhhhhhcchhhhh
Q 004813 674 LLDLMLGKGWVPDA------TTHGLLVGSSVGEEIDSRR 706 (729)
Q Consensus 674 ~~~~~~~~g~~p~~------~~~~~ll~~~~~~~~~~~~ 706 (729)
.|++.. . .|+. .....++.++ ..++.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 999998 3 3432 2344455555 34444444
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1e-07 Score=102.27 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=109.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887653 3456778888888888888888888888888764 34567778888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHHHhC
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG---SQLHLVSSGINKLVSD 646 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 646 (729)
+++..+..+. +...+..+..+|...|++++|.+.+++..+.. ..+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888877543 57778888888888888888888888888752 22466777788888888 8888888888888776
Q ss_pred CCCCCHHhHHHH
Q 004813 647 SEVLDSSMYNIL 658 (729)
Q Consensus 647 ~~~~~~~~~~~l 658 (729)
+ +.+...|..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 3 3334444433
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=8.6e-08 Score=84.73 Aligned_cols=77 Identities=10% Similarity=-0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 601 CALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 601 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
|...+++.++. .| +...+..+..++...|++++|...++++.+.... .+...+..++.++...|+.++|...|++.
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 44455555442 22 2445555555555555555555555555554211 12335555555555556555555555554
Q ss_pred H
Q 004813 679 L 679 (729)
Q Consensus 679 ~ 679 (729)
+
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=5.2e-07 Score=86.89 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH
Q 004813 93 QHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV 172 (729)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (729)
+.+...+..+...+.+.|++++|...|++..+.. |.+..++..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3455667778888888999999999999888876 667888888899999999999999999888654 3444433333
Q ss_pred HH-HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhc
Q 004813 173 LG-AIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCC-PNSRTFEIVIKGLIAN 250 (729)
Q Consensus 173 l~-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~ 250 (729)
.. .+.+. ++.+.|...|++..+.. +.+...+..+...+...|++++|++.|+++.+.... .+...+..++..+...
T Consensus 191 ~~~~l~~~-~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQ-AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHH-HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhh-cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 32 24455 77788888888888764 346778888888888899999999999888775321 1256777888888888
Q ss_pred CChhHHHHHHHHHH
Q 004813 251 SRVDDSVSILGEMF 264 (729)
Q Consensus 251 g~~~~a~~~~~~~~ 264 (729)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888777654
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=4e-06 Score=80.90 Aligned_cols=222 Identities=10% Similarity=-0.015 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM-R-KVDKAIRL 534 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~ 534 (729)
.++|+++++.++..++. +..+|+.-...+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34566666666665444 5555665555555556 4777777777777653 44566666666555555 5 66777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HH
Q 004813 535 RSLAYSSGTSYTTSTYTKIMLGLVKLQRAK--------DLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK-------LK 599 (729)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------~~ 599 (729)
++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++++..+. |...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 77777654 445666666555555555555 777888888777655 77777777777766665 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh--------------------HHHHHHHHHHHhCC-----CCCCHHh
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL--------------------HLVSSGINKLVSDS-----EVLDSSM 654 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~ 654 (729)
++++++++++..... |...|+.+-..+.+.|+. ....+....+.... ..+.+..
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 788888887775322 566666655555555443 22333333332221 1356678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
+..|++.|...|+.++|.++++.+.+. +.|
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dp 334 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQ 334 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hCh
Confidence 888999999999999999999998754 444
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=2.1e-07 Score=99.79 Aligned_cols=154 Identities=10% Similarity=-0.075 Sum_probs=120.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 534 (729)
.|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876544 67889999999999999999999999999864 44678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004813 535 RSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ---NKLKDCALFFNVMVKA 611 (729)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 611 (729)
+++..+.. +.+...+..+..++...|++++|.+.|++..+..+. +...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999875 456788999999999999999999999999988554 678888999999999 9999999999999986
Q ss_pred C
Q 004813 612 G 612 (729)
Q Consensus 612 ~ 612 (729)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=7.9e-07 Score=82.12 Aligned_cols=182 Identities=7% Similarity=-0.049 Sum_probs=123.7
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-L-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS----SS 514 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 514 (729)
+...+..+...+.+.|++++|...|+.+.+..+. + ....+..+..+|.+.|++++|...|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445566677889999999999999999976433 1 24577788999999999999999999998853 432 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 515 FNILIYGLCV------------------MRKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 515 ~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+..+..++.. .|++++|...|+++.+.. |+. ..+...... ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH--
Confidence 4555555554 355666666666666542 222 111111100 0000000
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 576 EGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----ETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
......+...|.+.|++++|+..|+++++. .|+. ..+..+..+|.+.|+.++|.+.++.+...
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011124567788999999999999999985 3442 46778889999999999999999998887
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=3.3e-06 Score=81.65 Aligned_cols=162 Identities=11% Similarity=-0.007 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 004813 519 IYGLCVMRKVDKAIRLRSLAYSSGT-SYTTS----TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD----VEAYCIL 588 (729)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 588 (729)
+..+...|++++|..++++..+... .++.. .+..+...+...+++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777788888888777765421 12211 2233555566667888888888888774221 22 3367788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCC-HHhHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKA-----GLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVLD-SSMYNI 657 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 657 (729)
...|...|++++|..+|+++++. +..+. ..++..+...|.+.|++++|++.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888888888888888888742 11112 236778888888899999999888887654 22222 567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHh
Q 004813 658 LINGLWKEGL-TSQASYLLDLMLG 680 (729)
Q Consensus 658 l~~~~~~~g~-~~~A~~~~~~~~~ 680 (729)
++.+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999994 6999999888764
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=6.1e-06 Score=79.63 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-C-CHHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV-E-KITEAVE 498 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 498 (729)
..++|+++++.++...+. +...|+.--..+...+ .+++++.+++.+....++ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345677777776665422 4444555555555556 477777777777776555 666666665555554 5 6677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------h
Q 004813 499 VFCCMSKNGCSLSSSSFNILIYGLCVMRKVD--------KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR-------A 563 (729)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 563 (729)
+++++.+.. +.+...|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++ +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 777777653 446666666555555555444 7777777777765 4566677777766666665 5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCCHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL--------------------KDCALFFNVMVKAG-----LVPDRE 618 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~-----~~p~~~ 618 (729)
+++++.+++++...+. |...|+.+-..+.+.|+. .+..++..++...+ -.+...
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 7788888887777655 777777766666655543 22333333332221 135677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
.+..++..|...|+.++|.++++.+.+.--+....-|+..++
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 778888899999999999999999886633444455655444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=3.8e-07 Score=75.02 Aligned_cols=105 Identities=10% Similarity=-0.098 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++.++. .+.+...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhhhHHHHHHHHHH
Confidence 345556667777777777777777777642 224667777777777777777777777777776 355667777777888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 663 WKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
...|++++|.+.|++.++ +.|+.....
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~ 118 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAR 118 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHH
Confidence 888888888888887776 356654433
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=1.2e-06 Score=80.25 Aligned_cols=92 Identities=8% Similarity=-0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|++.|++..+..+. +...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444555556666666666655542 345555555666666666666666666665554322 45555555556666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004813 595 QNKLKDCALFFNVMVKA 611 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~ 611 (729)
.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 66666666666665553
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=5.8e-06 Score=79.89 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HHHH
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT-----STYTKIMLGLVKLQRAKDLLVVLAQMLVEGC---ALD--VEAY 585 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~ 585 (729)
...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|+..+++..+... .+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33445556666666666666665554321110 1223344555667777788777777765311 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHhCC----CCC-CHHh
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKA-GLVPD-----RETMLSLLHGLADGSQLHLVSSGINKLVSDS----EVL-DSSM 654 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~ 654 (729)
+.+...|...|++++|..+|+++.+. ...|+ ..++..+...|...|++++|+..+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77788888888888888888877632 01122 1477778888888888888888888776541 111 1567
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHh
Q 004813 655 YNILINGLWKEGLTSQA-SYLLDLMLG 680 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 680 (729)
|..++.+|.+.|++++| ...+++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888899999999988 777777653
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=1.1e-05 Score=78.03 Aligned_cols=163 Identities=9% Similarity=-0.089 Sum_probs=120.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGC-SLSS----SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-YT----TSTYTK 552 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 552 (729)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999999877421 1221 12334666677778999999999998874322 22 236888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVE-----GCALD-VEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETML 621 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~ 621 (729)
+...|...|++++|+..|+++++. +..+. ..+|..+...|.+.|++++|.+++++.++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999998852 11112 236788889999999999999999988753 22223 56888
Q ss_pred HHHHHHhccCC-hHHHHHHHHHHHh
Q 004813 622 SLLHGLADGSQ-LHLVSSGINKLVS 645 (729)
Q Consensus 622 ~l~~~~~~~g~-~~~A~~~~~~~~~ 645 (729)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999994 6999999888765
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=4e-06 Score=76.59 Aligned_cols=126 Identities=7% Similarity=-0.006 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...|++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445555666666666666666553 3456666666666666666666666666666554 3445566666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALD---------------VEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|++++|++.|++..+...... ...+..+..+|...|++++|.+.|++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666432211 13444455555555555555555555554
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=1.8e-06 Score=75.17 Aligned_cols=128 Identities=6% Similarity=-0.143 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4555666677777777777777777766433 56677777777777888888888888777642 224667777777888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHHHH
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNI--LINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
..|++++|...++++.+. .+.+...+.. ++..+...|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888887776 3445555533 3334677788888888887654
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=4.9e-07 Score=79.90 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=87.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCh--HH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG-LADGSQL--HL 635 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 635 (729)
..|++++|...+++..+..+. +...|..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456677777777777666433 56677777777777777777777777777642 1245566666666 6677777 78
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 636 VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
|...++++.+. .+.+...|..++..|...|++++|.+.++++.+. .|+......++...
T Consensus 100 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 100 TRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence 88888777776 3455677777788888888888888888887764 34443333444333
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=1.4e-06 Score=73.94 Aligned_cols=103 Identities=8% Similarity=0.032 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...+..+...+.+.|++++|...|+++++.. +-+...|..+..+|...|++++|+..|+++.+. .|.++..|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence 4466677778888889999999988888753 225778888888888889999999999888887 45677888888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 662 LWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
|...|++++|.+.|++..+. .||..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999888874 46654
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=1.6e-06 Score=71.29 Aligned_cols=95 Identities=3% Similarity=-0.102 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
+......|.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444455555555555555555444322 44445555555555555555555555555431 1124445555555555
Q ss_pred cCChHHHHHHHHHHHhC
Q 004813 630 GSQLHLVSSGINKLVSD 646 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~ 646 (729)
.|++++|++.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555555544
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.2e-05 Score=77.78 Aligned_cols=168 Identities=9% Similarity=-0.077 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--H
Q 004813 478 ISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS-----SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS---YT--T 547 (729)
Q Consensus 478 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~ 547 (729)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788899999999999888775322111 22344556677888999999999998764321 11 3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLV---EGCA-L--DVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP-D 616 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~ 616 (729)
.+++.+...|...|++++|+..|++..+ .... + ...++..+...|...|++++|.+++++.++. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999999873 2111 1 1257888999999999999999999988763 1111 1
Q ss_pred HHHHHHHHHHHhccCChHHH-HHHHHHHHh
Q 004813 617 RETMLSLLHGLADGSQLHLV-SSGINKLVS 645 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 645 (729)
..+|..+..+|.+.|+.++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 777877664
No 130
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=4.1e-05 Score=73.58 Aligned_cols=189 Identities=7% Similarity=-0.010 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-hhHHHHH
Q 004813 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR--KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR-AKDLLVV 569 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 569 (729)
+++++.+++.+.... +-+..+|+.-...+...+ .+++++.+++.+.+.. +.|..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 466677777766643 446666766666666666 3677777777777665 4566666666666666666 4777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQ--------------NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG----- 630 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 630 (729)
++++++..+. |...|+.....+... +.++++++++.+.+.... -|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 7777776655 666676665555444 346777777777776422 2455565544444443
Q ss_pred ------CChHHHHHHHHHHHhCCCCCCH-HhHHHHHH---HHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 631 ------SQLHLVSSGINKLVSDSEVLDS-SMYNILIN---GLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 631 ------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
+.++++++.++++.+. .||. -++.+++. .....|..+++..+++++.+ +.|.-..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 3467888888888875 3333 22222221 11235677788888888876 4554433
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=3.9e-06 Score=73.01 Aligned_cols=126 Identities=7% Similarity=-0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2234445555555555555555555555554443 2334444445555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCI--LIQSMSEQNKLKDCALFFNVM 608 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~A~~~~~~~ 608 (729)
.|++++|.+.|++..+..+. +...+.. .+..+...|++++|.+.+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555544222 2223322 222234445555555554443
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=6.6e-07 Score=81.12 Aligned_cols=132 Identities=8% Similarity=-0.116 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCA-LDVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP--DR 617 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p--~~ 617 (729)
++..+...+...|++++|...+++.... +.. .....+..+...+...|++++|.+.+++..+. +-.| ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 3444444444444444444444444331 001 11233444555555555555555555554432 1011 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..+..+...+...|++++|...+++..+. +.+ ....++..+...+...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23445555555666666666666555432 100 0112345666667777777777766666553
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=4.2e-07 Score=87.17 Aligned_cols=191 Identities=9% Similarity=-0.020 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666777777777777777776642 3356666777777777777777777777776654 344566667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCA----LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS 631 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 631 (729)
++...|++++|+..|++..+.++. .....+..+ ... ++.. +..........+......+.. + ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~------~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIA------KKKR-WNSIEERRIHQESELHSYLTR-L-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHH------HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHH------HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHH
Confidence 777777777777777776654211 011111111 111 1111 122222223334433333322 2 257
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE-GLTSQASYLLDLMLG 680 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 680 (729)
+.++|++.+++..+. .+.+......+...+.+. +.+++|.++|+++.+
T Consensus 150 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEG-HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTT-TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhcc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 778888888777765 233344445555555555 667788888877664
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=3.2e-06 Score=71.70 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++..+..+. +...|..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 3334444444444444444444444432 223334444444444444444444444444443322 33344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 004813 595 QNKLKDCALFFNVMVK 610 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~ 610 (729)
.|++++|...|++.++
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=3.4e-07 Score=77.91 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|+..++++.+. .+.++..|..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-DIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHH
Confidence 3344555556666666666666666666532 124555666666666666666666666666665 24455666666667
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 004813 662 LWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~ 680 (729)
|...|++++|.+.|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766665
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=5.4e-06 Score=67.82 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 004813 655 YNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
+..++..+...|++++|.++++++
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333333333333333333333
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=3.2e-06 Score=70.26 Aligned_cols=95 Identities=4% Similarity=-0.117 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++.+.. ..+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3344444444444444444444444433221 33444444444444444444444444444421 112334444444444
Q ss_pred ccCChHHHHHHHHHHHh
Q 004813 629 DGSQLHLVSSGINKLVS 645 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (729)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=9.7e-07 Score=77.97 Aligned_cols=120 Identities=7% Similarity=0.041 Sum_probs=71.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHhcCCh--hH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG-LVKLQRA--KD 565 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 565 (729)
..|++++|...+++..+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3556666666666665542 3355666666666666677777776666666543 2345555556666 5566666 77
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
|...+++..+..+. +...+..+...|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777766665433 4556666666666777777777777776663
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=4.6e-06 Score=68.93 Aligned_cols=116 Identities=7% Similarity=-0.085 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...+++.....+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3334444444445555555555544443221 34444444445555555555555555544431 112344444444555
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
..|++++|...+++..+. .+.+...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHhc
Confidence 555555555555554443 22344444444444444443
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=0.00011 Score=70.53 Aligned_cols=198 Identities=8% Similarity=0.006 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE--KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK-VDKAIRL 534 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 534 (729)
++++..+++.+....++ +..+|+.-.-.+.+.| .+++++.+++++.+.. +.|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554443 5555555444444444 3566666666665543 3455555555555555555 3566666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc--------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 004813 535 RSLAYSSGTSYTTSTYTKIMLGLVKL--------------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ----- 595 (729)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 595 (729)
++.+.+.. +-|...|+.....+.+. +.++++++.+++.+...+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 66666554 34455555544444433 3466777777777776555 667776555444444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHH---HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 596 ------NKLKDCALFFNVMVKAGLVPDR-ETMLSLL---HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 596 ------~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
+.++++++.++++.+ ..||. ..+..++ .+....|..+++...+.++++. -|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV-DPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH-CGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh-CcchhhHHHHHHHHH
Confidence 457888888888887 45553 2222222 1223467778888999999886 233444555554443
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=7.3e-06 Score=67.00 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333334444444444444444443321 1223333333444444444444444444433322 1223333333333334
Q ss_pred cCChhHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQML 574 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~ 574 (729)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444333
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=4.8e-06 Score=77.54 Aligned_cols=189 Identities=10% Similarity=-0.081 Sum_probs=116.2
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHc------------CC-----
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKM-------ILKLGLAGNVEEMEGLCQNMVKE------------RY----- 127 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~----- 127 (729)
..+++..|++.|..+.... +.....|..+ ..++.+.++..++...+..-.+. |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999998875 5667788777 56666666666666666655442 10
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--H
Q 004813 128 ---PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN--V 202 (729)
Q Consensus 128 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 202 (729)
.............+...|++++|.++|+.+...+ |+......+-..+.+. +++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccHH
Confidence 0113455556677777778888888777776543 3322333334455556 77777777776544321 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPN--SRTFEIVIKGLIANSRVDDSVSILGEMFDL 266 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 266 (729)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666677777777777777777664322133 223444455566667777777777776654
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=1.5e-05 Score=74.28 Aligned_cols=188 Identities=11% Similarity=-0.022 Sum_probs=133.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCccc---------------
Q 004813 108 LAGNVEEMEGLCQNMVKERYPNVREALISL-------VFSFVNHYRVNGAMRVLVNMNSGGFKLS--------------- 165 (729)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 165 (729)
..++...|.+.|.++.+.+ |.....|..+ ..++.+.++..++...+.+..+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5789999999999999887 6778888888 67777777777777777766542 221
Q ss_pred -------HHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 004813 166 -------VDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPN-- 236 (729)
Q Consensus 166 -------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-- 236 (729)
......+...+... |++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQ-GNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 12233455666677 89999999998887653 333355666667888899999999987554421 111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004813 237 SRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE--LSFYTCIIPMLCRENKLEEAIRLFKMMRALD 302 (729)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 302 (729)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23566677788888888888888888875332143 3345566677778888888888888887754
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=3.8e-06 Score=82.82 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+. .+.+...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4566667777777777777777777777642 224666777777777777777777777777776 34566677777777
Q ss_pred HHhcCChhHH-HHHHHHHH
Q 004813 662 LWKEGLTSQA-SYLLDLML 679 (729)
Q Consensus 662 ~~~~g~~~~A-~~~~~~~~ 679 (729)
+.+.|++++| ..+++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777 44555554
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=7.4e-06 Score=67.65 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 1233333444444444444444444444443332 1223333333344444
Q ss_pred cCChhHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLV 575 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~ 575 (729)
.|++++|...|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=3.1e-06 Score=76.60 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMS 504 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 504 (729)
...+..+...+...|++++|...+++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3344444444444555555555444443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=4.2e-06 Score=68.87 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++..+. .+.+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 345556666677777777777777777642 224566777777777777777777777777766 345566777777777
Q ss_pred HhcCChhHHHHHHHHHHh
Q 004813 663 WKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~ 680 (729)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777765
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.7e-06 Score=82.95 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA 175 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (729)
...+..+...+.+.|++++|...|+...+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555555443 3344555555555555555555555555554432 2233344444444
Q ss_pred HHhcCCChhHHHHHHHHHH
Q 004813 176 IVEEKRGFADFVFVYKEMV 194 (729)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~ 194 (729)
+... |++++|...|++..
T Consensus 82 ~~~~-g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEM-ESYDEAIANLQRAY 99 (281)
T ss_dssp HHHT-TCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHH
Confidence 4444 55555555554444
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=7.4e-06 Score=67.97 Aligned_cols=95 Identities=9% Similarity=0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 33344444444444444444444444321 1233334444444444444444444444443332 122333333344444
Q ss_pred hcCChhHHHHHHHHHHH
Q 004813 559 KLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~ 575 (729)
..|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=2.5e-06 Score=72.43 Aligned_cols=95 Identities=5% Similarity=-0.054 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS 593 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (729)
.+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|++.....+. +...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33444444445555555555555544433 233444444444455555555555555554444322 3344444444555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004813 594 EQNKLKDCALFFNVMVK 610 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~ 610 (729)
..|++++|.+.|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=9.9e-06 Score=79.79 Aligned_cols=121 Identities=10% Similarity=-0.114 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----------------SSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
...+..+...|.+.|++++|...|++..... |+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555666666666666666666665542 22 24455555555555555555555555555
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 541 SGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 541 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
.. +.+...+..+..+|...|++++|+..|++.++..+. +...+..+..++...|++++|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 43 234445555555555555555555555555554332 344455555555555555554
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=8.4e-07 Score=80.08 Aligned_cols=128 Identities=9% Similarity=-0.054 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD---------------VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV 614 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 614 (729)
+..+...+...|++++|+..|++.++....-. ...|..+..+|...|++++|+..+++.++.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 33444445555555555555555554321100 2455556666666666666666666666542 2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH-HHHHHHH
Q 004813 615 PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS-YLLDLML 679 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 679 (729)
.+...+..+..+|...|++++|...|++..+. .+.+...+..+..++...|+.+++. ..+..|.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24555666666666666666666666666655 2445556666666666666555554 3444444
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=6.3e-06 Score=67.80 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCC----HHhHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDS--EVLD----SSMYN 656 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 656 (729)
.+..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++.++.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445566666666666666666666653 22 35556666666666666666666666665531 0111 13566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
.++.++...|++++|++.|++.+.. .||.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6777777788888888888877763 46654443
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.6e-05 Score=65.20 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++..+. +...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 333444444444444444444444432 223344444444444444444444444444443322 334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 004813 596 NKLKDCALFFNVMVK 610 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~ 610 (729)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 444444444444443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.3e-05 Score=65.82 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHHH
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC--ALD----VEAYCILI 589 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~----~~~~~~l~ 589 (729)
..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|++.+++.++..+ .++ ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444444444444444444444432 22333444444444444444444444444433211 001 12333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.++...|++++|++.|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444455555555555555444
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=4.6e-06 Score=70.33 Aligned_cols=94 Identities=10% Similarity=-0.093 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+..+...+...|++++|...|++++..+ +.+...|..+..+|...|++++|+..++++.+. .+.++..|..++.+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 3344445555555555555555555432 113445555555555555555555555555554 23444555555566666
Q ss_pred cCChhHHHHHHHHHHh
Q 004813 665 EGLTSQASYLLDLMLG 680 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (729)
.|++++|.+.|++..+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655554
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=1.6e-05 Score=64.08 Aligned_cols=98 Identities=10% Similarity=-0.092 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 3445555666666677777777776666532 224556666666666777777777777776665 34456667777777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 004813 662 LWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~ 681 (729)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777777653
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=3.3e-05 Score=62.24 Aligned_cols=96 Identities=5% Similarity=-0.118 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444445555555555555555555554322 44555555555555566666666665555532 113445555555566
Q ss_pred ccCChHHHHHHHHHHHhC
Q 004813 629 DGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~ 646 (729)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666665554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=2e-06 Score=77.57 Aligned_cols=96 Identities=11% Similarity=-0.078 Sum_probs=42.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----------------SSSFNILIYGLCVMRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 542 (729)
.+..+...+...|++++|...|++..... +.+ ...+..+..+|...|++++|+..++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444555555555555555555555431 011 1334444444444444444444444444432
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 543 TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 543 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+.+...+..+..+|...|++++|...|++..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223334444444444444444444444444443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2e-05 Score=66.81 Aligned_cols=102 Identities=11% Similarity=-0.059 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD----RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|+..+++..+. .+.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHH
Confidence 4566666777777777777777777777763 455 456667777777777888888777777765 344666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
.++.+|...|++++|.+.+++..+. .|+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~ 132 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKN 132 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 7778888888888888888877763 4544
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=1.8e-05 Score=68.60 Aligned_cols=95 Identities=4% Similarity=-0.099 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLW 663 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 663 (729)
.|..+...+...|++++|++.|++.++.. .-+...|..+..+|...|++++|+..+++..+. .+.+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34444444455555555555555554431 113444445555555555555555555555544 2334445555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 004813 664 KEGLTSQASYLLDLMLG 680 (729)
Q Consensus 664 ~~g~~~~A~~~~~~~~~ 680 (729)
..|++++|.+.|++.++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555554
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=1.4e-05 Score=65.94 Aligned_cols=108 Identities=7% Similarity=-0.024 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-------HHhHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-------SSMYN 656 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 656 (729)
.|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence 44455555556666666666666655532 2244555555666666666666666666655541 111 45666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 695 (729)
.++..|...|++++|.+.++++.+. .|+...+..+-.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6777777777777777777776663 345444444433
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=1.6e-05 Score=66.99 Aligned_cols=96 Identities=6% Similarity=-0.051 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|++.++... -+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 3444455556666666666666666655433 555566666666666666666666666665421 13445555666666
Q ss_pred ccCChHHHHHHHHHHHhC
Q 004813 629 DGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~ 646 (729)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.9e-05 Score=78.19 Aligned_cols=198 Identities=12% Similarity=-0.011 Sum_probs=100.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC
Q 004813 449 VLGKCKLCNYEDALRVFRQVSAQSLVLD----------------SISYSKLVEGLCQVEKITEAVEVFCCMSKNGC-SLS 511 (729)
Q Consensus 449 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 511 (729)
...+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+++..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445667777777777777776533211 11345566666677777777776666544210 111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CC--
Q 004813 512 S----SSFNILIYGLCVMRKVDKAIRLRSLAYSS----GTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVE--GC-- 578 (729)
Q Consensus 512 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-- 578 (729)
. .+.+.+...+...|+.+.|..+++..... +..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222223333456666666666555431 11111 334555566666666666666666655442 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 579 AL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKA--GLV-P-D--RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 579 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+ ....+..++..|...|++++|..++++.... ... | . ...+..+...+...|++++|...+.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1234555556666666666666666655432 111 1 1 123344444555556666666655555543
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=3.3e-05 Score=66.93 Aligned_cols=96 Identities=10% Similarity=-0.044 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSM 592 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 592 (729)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++..+. +...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555443 234445555555555555555555555555554332 455555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004813 593 SEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~ 610 (729)
...|++++|.+.|++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555666666655555554
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=1.3e-05 Score=65.23 Aligned_cols=92 Identities=21% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
..+...+.+.|++++|...|++.++. .| +...|..+..++...|++++|+..+++..+. .+.+...|..++.+|..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 34455666677777777777777664 23 4566666677777777777777777777765 34456677777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 004813 665 EGLTSQASYLLDLMLG 680 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (729)
.|++++|.+.+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=3.1e-05 Score=64.58 Aligned_cols=98 Identities=6% Similarity=-0.143 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
+...|..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|...+++..+. .+.+...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHHH
Confidence 45566666666666677777777776666642 123556666666667777777777777776665 2445666777777
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 004813 661 GLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|...|++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777776664
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=3e-05 Score=64.70 Aligned_cols=98 Identities=4% Similarity=-0.106 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 547 TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
...+..+...+...|++++|...|++.+...+. +...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444555555555555555555555544322 34455555555555555555555555555432 1134455555555
Q ss_pred HhccCChHHHHHHHHHHHhC
Q 004813 627 LADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~ 646 (729)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=3.4e-05 Score=61.43 Aligned_cols=91 Identities=8% Similarity=-0.054 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhc
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL--DSSMYNILINGLWKE 665 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 665 (729)
+...+...|++++|...+++..+.. ..+...+..+..++...|++++|.+.+++..+. .+. +...|..++..+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHHHHH
Confidence 3334444444444444444444321 112334444444444444444444444444443 122 344444444455555
Q ss_pred -CChhHHHHHHHHHHh
Q 004813 666 -GLTSQASYLLDLMLG 680 (729)
Q Consensus 666 -g~~~~A~~~~~~~~~ 680 (729)
|++++|.+.+++...
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 555555555544443
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=8.7e-06 Score=70.31 Aligned_cols=131 Identities=14% Similarity=0.010 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LVPD----RET 619 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~ 619 (729)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. -.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555444432000 01 1345555666666667777766666655420 0011 335
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..+...+...|++++|.+.+++..+. +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666777777777777777766543 111 1134677788888888888888888888764
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=2.4e-05 Score=64.52 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+..+..++...|++++|.+.|+++.+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.8e-05 Score=63.10 Aligned_cols=99 Identities=3% Similarity=-0.022 Sum_probs=86.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP--DRETMLSL 623 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l 623 (729)
+...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|.+.+++..+.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4567778888999999999999999999987544 67888899999999999999999999999852 22 47888999
Q ss_pred HHHHhcc-CChHHHHHHHHHHHhC
Q 004813 624 LHGLADG-SQLHLVSSGINKLVSD 646 (729)
Q Consensus 624 ~~~~~~~-g~~~~A~~~~~~~~~~ 646 (729)
..++... |++++|.+.+++..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 9999999999999987
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00015 Score=74.44 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCC-Cccc---HHhHHHHHHHHHhcCCChhHHHHHHHHHHH----CCCCCC-HH
Q 004813 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGG-FKLS---VDVFNVVLGAIVEEKRGFADFVFVYKEMVK----AGIVPN-VD 203 (729)
Q Consensus 133 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~g~~~~-~~ 203 (729)
++..++..|...|++++|.+.+..+...- ..++ .......+..+....|+++.+..++++... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 45677788888888888888887774321 0111 112233333333333777777777776653 222222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CC-C--H
Q 004813 204 TLNYLLEVLFETNRIESALDQFRRMHKK--GCC--P-NSRTFEIVIKGLIANSRVDDSVSILGEMFDL--GI-QL-E--L 272 (729)
Q Consensus 204 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~ 272 (729)
++..+...|...|++++|..++++.... +.. + ....+..+++.|...|++++|..+++..... .. .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6667777777788888888877776542 111 1 1235556666666677777777666665431 11 11 1 1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 273 SFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23344444455555666655555444
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=8e-05 Score=62.95 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSL 623 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (729)
..+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|.+.+++..+.. ..+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444455555555555544443 222 3444444555555555555555555554431 1134444455
Q ss_pred HHHHhccCChHHHHHHHHHHHhC
Q 004813 624 LHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555543
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=3.4e-05 Score=62.62 Aligned_cols=86 Identities=7% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 333444444444444443332 123333333334444444444444444444333222 233333344444444444444
Q ss_pred HHHHHHHH
Q 004813 602 ALFFNVMV 609 (729)
Q Consensus 602 ~~~~~~~~ 609 (729)
+..+++.+
T Consensus 105 ~~~~~~al 112 (121)
T 1hxi_A 105 LASLRAWL 112 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.04 E-value=3.3e-05 Score=66.76 Aligned_cols=111 Identities=11% Similarity=-0.035 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA-------GL---------VP-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+......+.+.|++++|+..|.+.++. .- .| +...|..+..+|.+.|++++|+..++++.+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555555542 00 11 2356777888888899999999999888887
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhh
Q 004813 647 SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT-THGLLVGSS 697 (729)
Q Consensus 647 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~ 697 (729)
.+.+...|..++.+|...|++++|.+.|++.++ +.|+.. .....+..+
T Consensus 93 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 93 -EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 466778888899999999999999999998887 457765 544444444
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=4.7e-05 Score=62.63 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---HHhHHHHHH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPD-R---ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD---SSMYNILIN 660 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 660 (729)
+...+...|++++|...|+++.+.. |+ . ..+..+..++...|++++|...++++.+. .+.+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHHHHH
Confidence 3444555666666666666665531 22 1 34555555666666666666666666654 2223 445666666
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004813 661 GLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~ 681 (729)
++...|++++|.+.|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666653
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00024 Score=74.89 Aligned_cols=174 Identities=9% Similarity=-0.050 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 492 KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK----------VDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 492 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
..++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777776653 3345556555555555555 677777777777654 456667777777777777
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------
Q 004813 562 --RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN-KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG-------- 630 (729)
Q Consensus 562 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 630 (729)
+++++++.++++.+.++. +...|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 557777777777777655 6777777666666777 677777777777765433 556666655554432
Q ss_pred ------CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 631 ------SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 631 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
+.++++++.+++++.. .|.|...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 4467777888777776 35677778777777777666443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=2e-05 Score=81.57 Aligned_cols=117 Identities=6% Similarity=-0.131 Sum_probs=58.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++.++.. +-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555554322 35555555555555556666665555555532 11344555555555556666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 004813 637 SSGINKLVSDSEVLDSSMYNILING--LWKEGLTSQASYLLD 676 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 676 (729)
++.++++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH-STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555554 22333444444444 555566666666555
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.00015 Score=59.47 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVEGCALDV---EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD----RETMLSLLH 625 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 625 (729)
+...+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...|+++.+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 334445555555555555555554222 11 344445555555556666665555555531 22 344455555
Q ss_pred HHhccCChHHHHHHHHHHHhC
Q 004813 626 GLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666655554
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=4e-05 Score=65.97 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP-DRE 618 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~ 618 (729)
++..+...+...|++++|.+.+++..+... ..+ ...+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444445555555555555554443200 001 234445555666666666666666655532 1111 123
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666667777777777766554
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=5.2e-05 Score=78.53 Aligned_cols=120 Identities=8% Similarity=-0.021 Sum_probs=80.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRA 563 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 563 (729)
...+.+.|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++.++++.+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344566778888888888877753 3356777777888888888888888888877764 34566777777778888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQS--MSEQNKLKDCALFFN 606 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~ 606 (729)
++|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877776433 33344444444 667777778877776
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=1e-05 Score=65.43 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 595 QNKLKDCALFFNVMVKAGL-VP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
.|++++|+..|++.++.+. .| +...+..+..+|...|++++|+..++++.+. .+.+...+..++.+|...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4677777777777776421 12 2455666777777777777777777777776 3556677777777778888888888
Q ss_pred HHHHHHHhC
Q 004813 673 YLLDLMLGK 681 (729)
Q Consensus 673 ~~~~~~~~~ 681 (729)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777763
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=0.0001 Score=75.97 Aligned_cols=96 Identities=5% Similarity=-0.028 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+. .+.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 4566666777777777777777777777642 124566667777777777777777777777765 34455667777777
Q ss_pred HHhcCChhHHHH-HHHHHH
Q 004813 662 LWKEGLTSQASY-LLDLML 679 (729)
Q Consensus 662 ~~~~g~~~~A~~-~~~~~~ 679 (729)
+.+.|++++|.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766543 344444
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=0.0001 Score=61.67 Aligned_cols=90 Identities=10% Similarity=-0.045 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhccCChHHHHHHHHHHHhC-------C
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPD-------------RETMLSLLHGLADGSQLHLVSSGINKLVSD-------S 647 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 647 (729)
....+.+.|++++|++.|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. +
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444455555555555555542 222 125566666666666666666666666653 2
Q ss_pred CCCCHHhH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 648 EVLDSSMY----NILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 648 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+.+...| .....++...|++++|++.|++.++
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2344566 7778888888888888888887764
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=9.3e-05 Score=73.64 Aligned_cols=87 Identities=6% Similarity=-0.058 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..|..+..+|.+.|++++|++.+++.++.. .-+...+..+..+|...|++++|++.++++.+. .+.+...+..+..++
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 444555555555555555555555555431 113444555555555555555555555555554 233444455555555
Q ss_pred HhcCChhHH
Q 004813 663 WKEGLTSQA 671 (729)
Q Consensus 663 ~~~g~~~~A 671 (729)
...++.+++
T Consensus 352 ~~~~~~~~a 360 (370)
T 1ihg_A 352 QKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00015 Score=62.55 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4444445555555555555555555544322 444455555555555555555555555554
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00072 Score=71.30 Aligned_cols=174 Identities=10% Similarity=-0.092 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR----------AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
...++|++.++++.... +-+..+|+.--.++.+.|+ ++++++.++++.+..++ +..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999999875 4556778877777777777 89999999999998777 888999888888899
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-------
Q 004813 596 N--KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS-QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE------- 665 (729)
Q Consensus 596 ~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 665 (729)
+ ++++++++++++.+.... +...|+.-..++.+.| .++++++.++++++. .+.+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999997544 6788888888888888 899999999999998 477889999988888774
Q ss_pred -------CChhHHHHHHHHHHhCCCCCCH-HHHHHHHhhhhhcchhhh
Q 004813 666 -------GLTSQASYLLDLMLGKGWVPDA-TTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 666 -------g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 705 (729)
+.+++|++.++++... .|+. ..|.-+-..+.+.+..+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5679999999999874 4644 456555555555555444
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=3.8e-05 Score=62.00 Aligned_cols=61 Identities=8% Similarity=0.008 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+..+..+|...|++++|+..|++.++..+. +...+..+..++...|++++|.+.+++.++
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444322 344444444444444444444444444443
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.82 E-value=0.00023 Score=73.33 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=65.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 004813 547 TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLH 625 (729)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 625 (729)
...|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|+..|+++++. .|+ ...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 356677777778888888888888888776544 6777777788888888888888888888764 343 446666777
Q ss_pred HHhccCChHHHHH-HHHHHHh
Q 004813 626 GLADGSQLHLVSS-GINKLVS 645 (729)
Q Consensus 626 ~~~~~g~~~~A~~-~~~~~~~ 645 (729)
++.+.++.+++.+ .+++|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 7777777766553 3444433
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=6e-05 Score=74.18 Aligned_cols=148 Identities=8% Similarity=0.025 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 591 (729)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556667777777888888888888777642 33221 112223333322211 1366777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChhH
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL-WKEGLTSQ 670 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 670 (729)
|.+.|++++|+..+++.++.. ..+...|..+..+|...|++++|+..|+++.+. .+.+...+..+.... ...+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888742 225677888888888888888888888888776 244555666666553 34466777
Q ss_pred HHHHHHHHHh
Q 004813 671 ASYLLDLMLG 680 (729)
Q Consensus 671 A~~~~~~~~~ 680 (729)
+.++|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7788888775
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00053 Score=56.98 Aligned_cols=110 Identities=11% Similarity=-0.062 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVS 637 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 637 (729)
++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666655 22322 4455555556666666666666643 44555566666655 56777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 004813 638 SGINKLVSDSEVLDSSMYNILINGLWK----EGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 682 (729)
+.|++..+.| ++..+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776654 55666667777776 677777777777777665
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.79 E-value=0.00024 Score=70.63 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNG--------------C-SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 544 (729)
+..+...+.+.|++++|...|+++.+.- . +.+...|..+..+|.+.|++++|+..++++.+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4445555666666666666666665410 0 1122333444444444444444444444444332 1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
.+...+..+..+|...|++++|++.|++..+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22333444444444444444444444444443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.76 E-value=0.00041 Score=57.99 Aligned_cols=25 Identities=16% Similarity=-0.140 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSS 541 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~ 541 (729)
.....+.+.|++++|+..|++.++.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444555555555555555443
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00015 Score=74.56 Aligned_cols=97 Identities=8% Similarity=0.024 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA-----G-LVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD-----S--EV 649 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~ 649 (729)
+++.|..+|...|++++|..++++.++. | -.|+ ..+++.|...|...|++++|+.++++..+. | .+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444455555555555544444321 1 1111 234455555555555555555555544332 1 11
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 650 LDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
....+.+.+..++...|.+++|..++.++++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444555666666667777777766654
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00013 Score=71.80 Aligned_cols=146 Identities=14% Similarity=0.035 Sum_probs=70.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4556666677778888888888777664 233321 122233333322211 125666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccCChHHH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHG-LADGSQLHLV 636 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A 636 (729)
+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++.++. .|+ ...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776433 5667777777777777777777777777653 343 3333344333 2234556677
Q ss_pred HHHHHHHHhC
Q 004813 637 SSGINKLVSD 646 (729)
Q Consensus 637 ~~~~~~~~~~ 646 (729)
..+++++...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.59 E-value=0.00012 Score=61.12 Aligned_cols=111 Identities=6% Similarity=-0.086 Sum_probs=60.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
+.+.+++|.+.++...+..+. +...|..+..++...++++.+.... +.+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 344556666666666655433 5555555555555555443111111 01346666
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 639 GINKLVSDSEVLDSSMYNILINGLWKE-----------GLTSQASYLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
.|++.++. -|.+...|..+..+|... |++++|++.|++.++ +.|+...|...+..+.
T Consensus 68 ~le~AL~l-dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 68 KFEEALLI-DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh-CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 66666655 233455566666666554 367777777777766 4566666655555443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=6.7e-05 Score=59.68 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..+...+...|++++|++.+++..+. .+.+...|..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333334444444444444444444433 222333444444444444444444444444443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.57 E-value=0.0003 Score=72.21 Aligned_cols=86 Identities=8% Similarity=-0.014 Sum_probs=37.9
Q ss_pred cCCChHHHHHHHHHhhhC------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHH
Q 004813 72 NTNDLSSALKIFKWVSIQ------KRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE-------RYPNVREALISLV 138 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~ 138 (729)
.+|++++|+.+++.+... +..+....+++.+..+|...|++++|+.++++.++. +.+....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555544321 011112334455555555555555555555444322 1112233444444
Q ss_pred HHHHhcCChhhHHHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~ 157 (729)
..|..+|++++|..++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 4555555555554444444
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00058 Score=54.03 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC------HHh
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD------SSM 654 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 654 (729)
+...|..+...+...|++++|.+.|++.++.. +.+...+..+..+|...|++++|++.+++..+. .+.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 56778889999999999999999999999853 236788899999999999999999999999987 2333 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004813 655 YNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
+..+..++...|++++|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 6777777777777776655544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.53 E-value=0.0033 Score=52.06 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ----VEKITEAV 497 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 497 (729)
++++|++.|++..+.| .++.. +...|...+.+++|.++|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555544 22222 3334444444555555555555542 34444444444544 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004813 498 EVFCCMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 542 (729)
+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34444445445544 455555555555555443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.00038 Score=58.07 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR----------AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++..+. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 33445555555554443 2344444444444444433 45777777777766544 566666777777665
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 596 N-----------KLKDCALFFNVMVKAGLVPDRETMLSLL 624 (729)
Q Consensus 596 ~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (729)
| ++++|++.|++.++ +.|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3 67777777777776 456655444333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.00068 Score=54.19 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+|++.|++..+.. +.+...+..+...|...|++++|+..+++..+. .+.+...|..++.+|...|++++|.+.|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555432 123455555666666666666666666666654 23445566666666666666666666666655
Q ss_pred h
Q 004813 680 G 680 (729)
Q Consensus 680 ~ 680 (729)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0017 Score=48.92 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444444321 11233334444444444444444444444444
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.0033 Score=47.29 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=8.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQML 574 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~ 574 (729)
.+...+...|++++|...+++..
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.00088 Score=51.89 Aligned_cols=63 Identities=13% Similarity=-0.088 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...+..+..+|...|++++|+..|+++.+. .+.+...|..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET-DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555556666666666655554 233445555566666666666666666665553
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.26 E-value=0.0026 Score=50.62 Aligned_cols=79 Identities=8% Similarity=-0.109 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004813 78 SALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 78 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
.|+..|+.+.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677766553 4567777778888888888888888888877765 556777777888888888888888888777
Q ss_pred Hh
Q 004813 158 NS 159 (729)
Q Consensus 158 ~~ 159 (729)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.0019 Score=49.95 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
..+..+...|...|++++|+..|++.++..+. +...|..+..+|...|++++|.+.|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444443322 23344444444444444444444444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.011 Score=57.01 Aligned_cols=75 Identities=12% Similarity=-0.079 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 614 VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGL 692 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 692 (729)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 4456677776666666788888888888888864 6777777788888888888888888888877 3577766543
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.91 E-value=0.006 Score=50.22 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS---QLHLVSSGINKLVSDSEVL--DSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...+.+-|.+..+.|. ++..+...+.+++++.+ +.++++.+++.+.+.. .| +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666776666554 68888888888888888 6668999999888863 23 4667778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 673 YLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 673 ~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
++++.+++ +.|++.--..+...+-
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 99999998 5788766666655543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.0037 Score=63.00 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.+++.|+..|...|++++|..++++.+
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 355666666666666666666666554
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0099 Score=59.99 Aligned_cols=90 Identities=9% Similarity=-0.010 Sum_probs=57.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CCCCHHhHH
Q 004813 591 SMSEQNKLKDCALFFNVMVKA---GLVPD----RETMLSLLHGLADGSQLHLVSSGINKLVSD-----S--EVLDSSMYN 656 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 656 (729)
.+...|++++|.+++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++.+. | .+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777777766643 12222 245666777777777777777777766543 1 122234677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.|+..|...|++++|..++++.++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788888888888888888777653
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.44 E-value=0.021 Score=42.95 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 615 PDRETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.|...+..+..++...++ .++|..++++..+. -+.++..+..++..+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677777777754444 68888999888887 4667778888889999999999999999999875
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.39 E-value=0.008 Score=60.54 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCC-ccc-HHhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004813 132 EALISLVFSFVNHYRVNGAMRVLVNMNS-----GGF-KLS-VDVFNVVLGAIVEEKRGFADFVFVYKEMV 194 (729)
Q Consensus 132 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 194 (729)
.+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|-..|... |++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q-g~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL-ENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 4444455555555555555555544421 111 111 22344444444444 55555555555443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.36 E-value=0.12 Score=49.81 Aligned_cols=66 Identities=5% Similarity=-0.081 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004813 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL 266 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 266 (729)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455566666555555566666666666666653 55555555566666666666666666666654
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.25 E-value=0.2 Score=39.47 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
.|..++..++..+.... .+..-||.++--....-+-+...++++.+-+ -.| ....|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHH
Confidence 45566666666555542 3333444444333333333444444433321 111 1234444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
+-.+- -+...+...+..+..+|.-+.-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 43321 23345555666667777777777777775443 4667777777777777777777777777777777753
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.23 E-value=7.1e-06 Score=79.94 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (729)
.|.+.++|+++.++.++ .+ .|.-.|...+..|+.+-|.++++-.++.| +...|...+-.|...=+.+-
T Consensus 463 LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDv 530 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 530 (624)
T ss_dssp HHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHH
T ss_pred HHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHH
Confidence 45556666666554321 11 11222334455666666666666666543 33455555555555555555
Q ss_pred HHHH
Q 004813 636 VSSG 639 (729)
Q Consensus 636 A~~~ 639 (729)
++++
T Consensus 531 VlEl 534 (624)
T 3lvg_A 531 VLET 534 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.22 E-value=0.012 Score=59.38 Aligned_cols=61 Identities=11% Similarity=-0.103 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004813 97 DTYCKMILKLGLAGNVEEMEGLCQNMVKE-------RYPNVREALISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
.+++.+..+|...|++++|+.++++.++. ..|....+++.|...|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444555555555555555555444322 11112334444445555555555554444444
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.2 Score=55.96 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=70.3
Q ss_pred CChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004813 181 RGFADFVF-VYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSI 259 (729)
Q Consensus 181 ~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 259 (729)
+++++|.+ ++..+ + +......++..+.+.|.++.|+++.+... .-.......|+++.|.++
T Consensus 613 ~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 613 GEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDL 674 (814)
T ss_dssp TCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHH
Confidence 67777765 44111 1 12223566666777777777776553111 112234556777777776
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 260 LGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
.+.+ .+...|..+...+.+.|+++.|.++|..+.+ |..+...+...|+.+...++.+....
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 5432 4556777788888888888888887776643 33444445556666655554444443
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.17 E-value=0.07 Score=40.10 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 004813 93 QHTADTYCKMILKLGLAGN---VEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGG 161 (729)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 161 (729)
+.++..+..+..++...++ .++|..++++.++.+ |.+..+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 688888888888877 6777888888888888888888888888887653
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.06 E-value=0.02 Score=43.81 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=6.6
Q ss_pred HHHhcCChhHHHHHHHHH
Q 004813 556 GLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~ 573 (729)
++...|++++|++.|++.
T Consensus 44 ~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 44 AYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333333333333333333
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.51 Score=39.90 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=63.8
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 004813 175 AIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVD 254 (729)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 254 (729)
...+. |+++.|.++.+++. +...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 14 LAL~l-g~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEY-GNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHT-TCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHhc-CCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34445 77777777766652 566777777777777777777777776542 334444455566766
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 255 DSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
+..++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66655555544432 455555566677777777776544
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.97 E-value=0.43 Score=44.00 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CCH
Q 004813 218 IESALDQFRRMHKKGCCPN---SRTFEIVIKGLIAN-----SRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE-NKL 288 (729)
Q Consensus 218 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 288 (729)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35566666666653 344 44677777777773 77888888888777755433456666677777774 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 004813 289 EEAIRLFKMMRALDLM 304 (729)
Q Consensus 289 ~~A~~~~~~m~~~~~~ 304 (729)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888777776544
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.94 E-value=0.063 Score=42.40 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=70.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH---HHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChh
Q 004813 594 EQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL---VSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTS 669 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 669 (729)
.......+.+-|.+....|. |+..+-..+.+++.+.++... ++.+++.+...+.+ ........|+-++.+.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33445566666666665544 778888888999998887665 88888888876312 24456778899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 670 QASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 670 ~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
+|.+.++.+++ +.|++.-...|
T Consensus 92 ~A~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHH
Confidence 99999999998 57876444433
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.91 E-value=0.02 Score=43.73 Aligned_cols=54 Identities=4% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVP-DRE-TMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+...|++++|.+.++++++. .| +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555442 22 233 4444444455555555555555555443
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.90 E-value=2.7 Score=46.10 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=122.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhH--HHHHHHHhhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 004813 416 WLCENEEIRKAYELLGRMVVSSVVPDCATY--SAFVLGKCKLCNYEDALRVFRQVSAQSL-------VLDSISYSKLVEG 486 (729)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 486 (729)
+....|+.++++.+++.....+-..+..+- ..+.-+....|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 344566666666666655432101122221 2222233344444455665555443211 0112222333333
Q ss_pred HHccCC-HHHHHHHHHHHHHCCCCCCHHH--H--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 487 LCQVEK-ITEAVEVFCCMSKNGCSLSSSS--F--NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 487 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
++-.|. -+++.+.+..+.... +..+ . ..|...+.-.|+.+....++..+.+.. .-+..-...+.-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCC
Confidence 333332 234455555554421 2111 1 123333445566666666666665432 112222223333444667
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCChHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYC---ILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH--GLADGSQLHLV 636 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A 636 (729)
+.+.+..+.+.+... ..|. .-|. .+.-+|+-.|+.....+++..+... ++..+-...+- ++...|+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred ChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHH
Confidence 777777777766653 1222 2222 2233455667766666677777653 23222222222 33345555666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 637 SSGINKLVSDSEVLDSSMYNILINGLWKEGLT-SQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
.++++.+.+.+ .|....-..++-+....|+. .+|+.++..+.. .+|..+-...+-+
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 66666665542 33333333444444445544 467777777763 4565554444433
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.85 E-value=0.46 Score=52.89 Aligned_cols=153 Identities=11% Similarity=0.087 Sum_probs=86.1
Q ss_pred HHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChh
Q 004813 106 LGLAGNVEEMEG-LCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184 (729)
Q Consensus 106 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (729)
....+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+. +. .-+...... |+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~-~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKV-GQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHH-TCHH
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhc-CCHH
Confidence 345666777665 43211 1 022235666666677777777655421 11 112233445 7788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMF 264 (729)
Q Consensus 185 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 264 (729)
.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775433 2567788888888888888888888876643 3344445555666666555555544
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 265 DLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 265 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
..|. ++....+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4332 333444455566666666655443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.043 Score=42.46 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDS------EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
.+..+...+...|+++.|...++.+.+.. ..+...++..|+.+|.+.|++++|..+++++.+ +.|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 33444555555555555555555544320 122344556666666666666666666666665 345543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.28 Score=41.50 Aligned_cols=102 Identities=12% Similarity=0.214 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004813 211 VLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEE 290 (729)
Q Consensus 211 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (729)
.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|....+ +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888877665 2667788888888888888888888877765 5556666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 291 AIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 291 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
-.++-+.....| -++.....+...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666655554443 2445555666778888887777443
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.63 E-value=0.075 Score=43.72 Aligned_cols=22 Identities=0% Similarity=0.033 Sum_probs=10.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.-+|.+.|++++|.++++.+++
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.41 E-value=0.0018 Score=63.60 Aligned_cols=224 Identities=13% Similarity=0.185 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIP 280 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 280 (729)
....|..|..+....+++.+|++.| + +. -|+..|..+|.+..+.|.++.-...+....+.. -+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--I-kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--I-KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--C-CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--H-hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3456778888888888888777655 2 22 367778888888888888888888877766542 33444567888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHH
Q 004813 281 MLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDE 360 (729)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 360 (729)
+|++.+++.+-.+++. .||..-...+..-|...|.++.|.-+|..+.. |..+...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8888888665444321 26666677777888888888888777765432 1122222333344333
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 361 SVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVP 440 (729)
Q Consensus 361 a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 440 (729)
|.+.-++ ..++.+|..+-.+|...+++..|.-.--.+.- ...-...++..|-..|.+++-+.+++...... ..
T Consensus 189 AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 189 AVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp STTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred HHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 3322111 22344455555566666555555433322222 22333444445555566666555555544221 23
Q ss_pred CHHhHHHHHHHHhhc
Q 004813 441 DCATYSAFVLGKCKL 455 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~ 455 (729)
..-.|+-|.-.|++-
T Consensus 262 HmGmFTELaILYsKY 276 (624)
T 3lvg_A 262 HMGMFTELAILYSKF 276 (624)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHhc
Confidence 444555555444443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.21 E-value=0.11 Score=47.82 Aligned_cols=79 Identities=6% Similarity=0.086 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc-CC
Q 004813 564 KDLLVVLAQMLVEGCALD---VEAYCILIQSMSEQ-----NKLKDCALFFNVMVKAGLVP--DRETMLSLLHGLADG-SQ 632 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~ 632 (729)
..|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++. .| +..++..+.+.++.. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence 3445555555544 233 33455555555552 5666666666666552 33 244455555555553 55
Q ss_pred hHHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSD 646 (729)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (729)
.++|.+.+++....
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666665554
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.83 E-value=0.33 Score=37.32 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+..+..++.+.|+++.|...+++..+
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33344444444444444444444433
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.52 E-value=0.45 Score=38.54 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++.++|.++|+.+++.+-.- ...|......-.++|++..|.+++.+.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 44555555555554321111 333333333334444455555554444444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.50 E-value=0.2 Score=40.58 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHhccCChHHHHHHHHHHHhCC
Q 004813 581 DVEAYCILIQSMSEQNKL------KDCALFFNVMVKAGLVPDRE-TMLSLLH------GLADGSQLHLVSSGINKLVSDS 647 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 647 (729)
|..+|-..+....+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666666 6667777777663 444321 1111111 1223489999999999997663
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 648 EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 648 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
-.. ...|-..+..-.+.|+...|.+++.+....+-+| .......|..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 334 7889999999999999999999999999876554 44555555554
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.65 E-value=2.1 Score=33.86 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC 578 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 578 (729)
....++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444444455555555555443221 134444444555555555555555555555555443
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.51 E-value=0.85 Score=36.13 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 612 GLVPDRETMLSLLHGLADGSQL---HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 612 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
+-.|+..+--.+.+++.+..+. .+++.+++.+.+.+.......+..|+-++.+.|++++|.++.+.+++ ..|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4457777777888888877654 46788888888764223456788899999999999999999999997 578876
Q ss_pred HHHHHHhh
Q 004813 689 THGLLVGS 696 (729)
Q Consensus 689 ~~~~ll~~ 696 (729)
-...|-..
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.39 E-value=0.34 Score=38.23 Aligned_cols=21 Identities=0% Similarity=0.047 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~ 610 (729)
-++.+.|++++|.++++.+++
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 344444555555555554444
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.23 E-value=2.2 Score=34.26 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 614 VPDRETMLSLLHGLADGSQL---HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
.|+..+--.+.+++.+..+. .+++.+++.+...+..........|+-++.+.|++++|.++.+.+++ ..|++.-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 57777777888888877654 46777888877753223455777888899999999999999999998 57877554
Q ss_pred HHHHhh
Q 004813 691 GLLVGS 696 (729)
Q Consensus 691 ~~ll~~ 696 (729)
..|-..
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.44 E-value=1.4 Score=43.51 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=57.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATTHG 691 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 691 (729)
...++.++...|+.++|...+..+... .|.+...|..++.+|.+.|+..+|.+.|+++.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667777889999999888888876 577888999999999999999999999888654 48899887643
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.32 E-value=0.46 Score=50.94 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=42.8
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
..|...|+++.|+++.++.... .|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455678888888888888877 56677888888888888888888888887763
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.94 E-value=8.3 Score=38.83 Aligned_cols=189 Identities=10% Similarity=0.023 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----cc
Q 004813 420 NEEIRKAYELLGRMVVS-----SVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC----QV 490 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 490 (729)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..-. -......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36778888777665432 23445566777788888888888877776665543222 1222233333221 12
Q ss_pred CCHHH--HHHHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHH
Q 004813 491 EKITE--AVEVFCCMSK--NG-CSL---SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY-T----TSTYTKIMLGL 557 (729)
Q Consensus 491 g~~~~--A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~ 557 (729)
...+. -..+.+.... .| +-. .......|...|...|++.+|..++..+...-... + ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22111 1111111100 00 111 11122345555556666666666665554211111 1 12344444555
Q ss_pred HhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVE----GCALD--VEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
...+++.+|..++.++... ...|+ ...+...+..+...+++.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5556666665555554321 11111 1233444445555555555555555544
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.69 E-value=18 Score=39.74 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=64.8
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHH
Q 004813 452 KCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSF--NILIYGLCVMRKVD 529 (729)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 529 (729)
+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 344555555555555554431 1111122222223334566666666666655421 1111111 12333455566655
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL-KDCALFFNVM 608 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~ 608 (729)
...+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+. .++.+++..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666655431 2222222222233344455554555554443322 22322222222333333332 4555555555
Q ss_pred H
Q 004813 609 V 609 (729)
Q Consensus 609 ~ 609 (729)
.
T Consensus 656 ~ 656 (963)
T 4ady_A 656 T 656 (963)
T ss_dssp H
T ss_pred c
Confidence 5
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.61 E-value=15 Score=38.60 Aligned_cols=376 Identities=10% Similarity=-0.021 Sum_probs=194.2
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
+..|.+.++|...+.++.. .+.+...-+....+....|+..+|......+-..+ ......+..++..+.+.|.
T Consensus 79 l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 4455567777777765532 24566666667778888898888887777776665 4455677788888877665
Q ss_pred hhh--HHHHHHHHHhCCC-----------cccHHh-HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH---HHHHH
Q 004813 147 VNG--AMRVLVNMNSGGF-----------KLSVDV-FNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDT---LNYLL 209 (729)
Q Consensus 147 ~~~--A~~~~~~~~~~~~-----------~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li 209 (729)
... ..+-+..+...|- +++... ...++. +. .+...+...... +.++... +...+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~a-l~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS-LA---NNPNTVLTFART-----TGATDFTRQMAAVAF 222 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH-HH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHH-HH---hChHhHHHHHhc-----cCCChhhHHHHHHHH
Confidence 433 2222222333221 111111 111111 11 222333222211 1222221 22223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIK----GLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE 285 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (729)
.-+.+ .+.+.|...+....+.. ..+......+-. .+...+...++...+....... .+.....-.+....+.
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 33333 47899999998886533 223333322322 2333443556666666655433 3333344455556688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 004813 286 NKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFL 365 (729)
Q Consensus 286 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l 365 (729)
|+++.|...|+.|..... ......--+..++...|+.++|..+|..+.. +. +|..++.+ .+.|..-. +
T Consensus 299 ~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~----~ 366 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE----L 366 (618)
T ss_dssp TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC----C
T ss_pred CCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC----C
Confidence 999999999999876321 1233333455677889999999999999864 22 34333322 22221100 0
Q ss_pred HhhcCCCCC--------CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 366 EDKCGYVTS--------PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 366 ~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
........ .....+..+...|....|...+..+.... +......+.......|.++.++.........+
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~ 443 (618)
T 1qsa_A 367 -KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGKLWD 443 (618)
T ss_dssp -CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred -CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhc
Confidence 00000000 01223456778899999998888876642 22223344455566777877765554332221
Q ss_pred CC--CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH
Q 004813 438 VV--PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDS 477 (729)
Q Consensus 438 ~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 477 (729)
.. .-+..|...+....+...++...-.--...+.++.|+.
T Consensus 444 ~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 444 HLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp CHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred chhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 00 00113455555555554444433222223345555543
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.18 E-value=14 Score=37.25 Aligned_cols=326 Identities=10% Similarity=0.081 Sum_probs=165.9
Q ss_pred CChHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 74 NDLSSALKIFKWVSIQ----KRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 74 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
++++.|++.+-.+.++ .....+......++..|...++|+...+.+..+.... .-.......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH--------
Confidence 6788888777665543 2345567777888888888888887777665554332 11222222333222
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcC-CChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEK-RGFADFVFVYKEMVKAGIVP---NVDTLNYLLEVLFETNRIESALDQF 225 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~A~~~~ 225 (729)
..++... ..++..+...++..+.... |. +-. .......|...|...|++.+|.+++
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vte~k---------------iflE~erarl~~~La~i~e~~g~~~eA~~iL 160 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVTENK---------------IFVEVERARVTKDLVEIKKEEGKIDEAADIL 160 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSSSCC---------------CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHhccc---------------hHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1222211 0122222222222211100 10 000 1223346777888889999999999
Q ss_pred HHHHhC--CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHhHHHHHHHHHhcCCHHHHHHH
Q 004813 226 RRMHKK--GCCPN---SRTFEIVIKGLIANSRVDDSVSILGEMFD----LGIQLE--LSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 226 ~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
..+... |..+. ...+...++.|...+++..|..++..+.. ....|+ ...+...+..+...+++.+|-+.
T Consensus 161 ~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 161 CELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 887653 22211 24566677888889999999988887642 222222 23566777778888999888888
Q ss_pred HHHHHhC-CCCCCHhhHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc--CChHHHHHHHHh
Q 004813 295 FKMMRAL-DLMPDELTYEE----LINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEV--GKFDESVNFLED 367 (729)
Q Consensus 295 ~~~m~~~-~~~p~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~l~~ 367 (729)
|.++.+. ...-|...+.. ++.+..-.+....-..++.........++...+..++.+|... .+++...+.+..
T Consensus 241 y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 241 LQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 8776542 01112222221 1112222222222223333333332334556677778877654 456666666654
Q ss_pred hcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC------CcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 368 KCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA------DCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
....+...... .+.-.....+.+.+.++++. +..++..+...+. =..+++...+.+|...|
T Consensus 321 ~L~~~~~~~~~-------~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~--l~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 321 VLNEDDLAFGG-------EANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD--LTESQTETYISDLVNQG 387 (445)
T ss_dssp STTTCCSSCCC-------SCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT--SCHHHHHHHHHHHHHHT
T ss_pred Hhcccchhhhc-------chhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC--cCHHHHHHHHHHHHHCC
Confidence 43333221100 00000111122222222110 2333444444442 25788899999998765
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.15 E-value=4.1 Score=40.23 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 004813 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVK-----AGIVPNVDTL 205 (729)
Q Consensus 133 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 205 (729)
+...++..+...|++.+|...+..+.... +.+...+..+|.++.+. |+..+|++.|+++.+ .|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34445555666666666666666664432 44555666666666666 666666666666542 3666655543
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.91 E-value=2.5 Score=45.36 Aligned_cols=49 Identities=10% Similarity=-0.076 Sum_probs=41.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcc
Q 004813 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE 701 (729)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 701 (729)
+..-|..|+....+.+++++|.+.|+..+.. +-+...+.-||..|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 4456999999999999999999999999974 577888999999997654
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.53 E-value=5.3 Score=29.68 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
=+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444455554455555555555555555555555555555555544
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.52 E-value=4.7 Score=29.98 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
+.=+..+.++.+...+..|++.+..+.+++|.+.+++.-|+++++-++.+ ..+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 34455566666666666666666666666666666666666666666643 22333445555544
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.46 E-value=12 Score=43.19 Aligned_cols=89 Identities=7% Similarity=0.036 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 004813 166 VDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN----VDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFE 241 (729)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 241 (729)
..-|..++..+-+. +.++.+.+.-....+...+-+ ...|..+.+.+...|++++|...+-.+.....+ .....
T Consensus 899 ~~YY~hv~~LFe~~-~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr 975 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLL 975 (1139)
T ss_dssp HHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHH
Confidence 34566677777776 777777776665554321111 125677778888888888888888777765332 44566
Q ss_pred HHHHHHHhcCChhHHH
Q 004813 242 IVIKGLIANSRVDDSV 257 (729)
Q Consensus 242 ~li~~~~~~g~~~~a~ 257 (729)
.|+..++..|..+.-.
T Consensus 976 ~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhCCChhhhh
Confidence 6777777766655443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.45 E-value=4.2 Score=33.72 Aligned_cols=27 Identities=4% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
++..+.+++...|++.+|...|++.++
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455566666666666666666543
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.31 E-value=13 Score=42.75 Aligned_cols=156 Identities=11% Similarity=0.026 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
|..++..+.+.+.++.+.+.-...++....-+. ..|..+.+.+...|++++|-..+-.+-.... -...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 445555555556666665555554443111111 1355556666666666666655555544322 2334444444
Q ss_pred HHhccC------------ChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhHHHH-HHHHHHhCC---CCC--
Q 004813 626 GLADGS------------QLHLVSSGINKLVSD--SEVLDSSMYNILINGLWKEGLTSQASY-LLDLMLGKG---WVP-- 685 (729)
Q Consensus 626 ~~~~~g------------~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~g---~~p-- 685 (729)
.++..| ..++..+++..-... .....+.-|..|-.-+...||+..|.+ +|+.+.+.+ -..
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~ 1059 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGK 1059 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccc
Confidence 444333 334444444332221 011122345566666677788876554 466655421 111
Q ss_pred -----CHHHHHHHHhhhhhcchhhhhh
Q 004813 686 -----DATTHGLLVGSSVGEEIDSRRF 707 (729)
Q Consensus 686 -----~~~~~~~ll~~~~~~~~~~~~~ 707 (729)
-...|-++|+++.--+..+++.
T Consensus 1060 ~~~~~q~~~yL~~INaLslvd~~~aWI 1086 (1139)
T 4fhn_B 1060 KERTFIIEHYLIVLNTLELLPKEDTWI 1086 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCCC
T ss_pred hhHHHHHHHHHHHHHHHhcCChhhCEE
Confidence 1245777888876554434433
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.67 E-value=3.8 Score=33.97 Aligned_cols=104 Identities=10% Similarity=0.018 Sum_probs=66.8
Q ss_pred CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 GCALDVEAYC--ILIQSMSEQNKLKDCALFFNVMVKA-GLVPDR-------ETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ~~~p~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
|..|....|+ .-++.+...|.++.|+-+.+.++.. +..|+. .++..+.+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445444333 3356677888899988887776643 223331 35667788999999999999999986432
Q ss_pred --CC----------------------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 647 --SE----------------------VLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 647 --~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+ ..+...-.-+..+|.+.|++++|+.+++.+..
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 01 11123445588999999999999999887643
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.36 E-value=23 Score=33.57 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=56.2
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHhHHHHHHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELL----GRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
.++..-|.+.+++++|.+++..-. ..+.+.|+...+-++. +-+.+.++++|......++..+
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455555666666666666554321 1233344444333333 4444556666666666665555
Q ss_pred hhcCCHH-HHHHHHHHHH----hC--CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 004813 453 CKLCNYE-DALRVFRQVS----AQ--SLVLDSISYSKLVEGLCQVEKITEAVEVF 500 (729)
Q Consensus 453 ~~~~~~~-~a~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 500 (729)
.....-+ .-..+.+.++ +. ...-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4433210 1122222222 11 13346666777777777777777777766
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.52 E-value=27 Score=32.80 Aligned_cols=111 Identities=14% Similarity=0.042 Sum_probs=60.7
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHhHHHHHHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYEL----LGRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
.++..-|.+.+++++|.+++..-. ..+.+.|+...|-++ ++-+.+.+++++......++..+
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 556666666667776666654432 223444554444443 44445556777777666666655
Q ss_pred hhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 453 CKLCNYE-DALRVFRQVS----AQS--LVLDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 453 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
.....-+ .-.++.+.++ +.| ..-|+.....+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4422111 1122222222 221 22367777788888888888888777664
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.26 E-value=9.7 Score=30.20 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=32.0
Q ss_pred CCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 545 YTTSTYTKIMLGLVKLQR---AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444544443 234555555555543211233333444455566666666666666655
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.98 E-value=9 Score=30.26 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
+..+-++.+....+.|++.+....+.+|.+.+|+..|.++|+-++.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44555555555666777777777777777777777777777766665 223344455443
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.97 E-value=10 Score=29.94 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
|.-+..+-++.+...+..|++.+....+++|.+.+|+.-|+++||-++.+ ..+....|..++.-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44567777888888889999999999999999999999999999999875 345566687777654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.95 E-value=17 Score=29.26 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=30.8
Q ss_pred CCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 545 YTTSTYTKIMLGLVKLQR---AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 234455555555443221222233344455555666666665555555
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.91 E-value=50 Score=34.69 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 004813 76 LSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLV 155 (729)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 155 (729)
+.+...|++. .++.+.....-..-+..+++.+++.....++.. .+.+...-.....+....|+..+|.....
T Consensus 55 ~~ev~~Fl~~---~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~ 126 (618)
T 1qsa_A 55 AVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (618)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 4444444433 333344444445556666777777766654432 24456666666667777777666666555
Q ss_pred HHHhCCCcccHHhHHHHHHHHHhc
Q 004813 156 NMNSGGFKLSVDVFNVVLGAIVEE 179 (729)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~ 179 (729)
.+-..| ...+..+..++..+.+.
T Consensus 127 ~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 127 ELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHhCC-CCCcHHHHHHHHHHHHC
Confidence 553332 22333344444444443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.88 E-value=7.1 Score=35.44 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=40.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
....+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++.+.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556778888888777777753 336666677778888888888888888877775
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.36 E-value=15 Score=31.65 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 598 LKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
..++.++|..|...|+--. ...|......+...|++.+|.++++.-++.+-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555555555443322 33444455555555555555555555555433
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.28 E-value=10 Score=34.48 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=39.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
..+.+.|++++++.....-++.. |.+......+++.+|-.|+++.|..-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566777777777777666665 667777777777777777777777777777553
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.50 E-value=9.6 Score=38.16 Aligned_cols=98 Identities=5% Similarity=-0.085 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHH--H
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE--GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA---GLVPDRETM--L 621 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~--~ 621 (729)
+...+..-|.+.|+++.|.+.|.++... +..--...+-..++.+...+++..+...+.++... +-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566778888888888888888888765 22333456667777777888888888888776543 222222111 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhC
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234566777777766665544
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.50 E-value=8.7 Score=36.93 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=34.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcC--CHHHHHHHHHHHHHCCCC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENE--EIRKAYELLGRMVVSSVV 439 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 439 (729)
..++.-|...++.++|.+.++++.............+..++-+.+ ..+...+++..+...|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 667777777788888888887775321112222333333443332 234455566666555543
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.22 E-value=52 Score=30.00 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=13.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC
Q 004813 318 CENLRLDDANDILEDMIVIGLTPT 341 (729)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~~~~p~ 341 (729)
+..+......++++.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 344555555566666666665544
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.84 E-value=20 Score=26.61 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=29.0
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
.+...|++++|..+.+.+. .||...|-.| +-.+.|..+++...+.++-..|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 4556666666666555443 4555555444 3446666666666666665544
No 268
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=72.21 E-value=46 Score=30.79 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 378 ALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCA 443 (729)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 443 (729)
+.+...+..|+.+-+.-+++.-......+..-++..+...+..|+. ++.+.+.+.|..++..
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 3444445556665555555544443333333333323333344443 3344445555555544
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.39 E-value=35 Score=34.04 Aligned_cols=130 Identities=12% Similarity=-0.056 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCChhHHHH
Q 004813 493 ITEAVEVFCCMSKNGC-SL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS--YTTSTYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 568 (729)
+++-.+.+....+... .. -..+...+...|.+.|+++.|.+.+.++...-.. .-...+-.+++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444444221 12 2336778999999999999999999999875333 335567788899999999999999
Q ss_pred HHHHHHHc---CCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 569 VLAQMLVE---GCALDVEA--YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 569 ~~~~~~~~---~~~p~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
.+.++... +..|+... ...-+..+...+++.+|...|-+....--..+...+..
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 99988653 33333322 11222334567899999998887766422334444433
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.58 E-value=19 Score=26.61 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=29.8
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
.+...|++++|..+.+.+. .||...|-.| +-.+.|..+++...+.++-..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 4556667766666554432 4555555444 3456666666666666666554
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.82 E-value=33 Score=27.99 Aligned_cols=53 Identities=17% Similarity=0.023 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 635 LVSSGINKLVSDSEVLD-SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
++.++|..|...|+-.. +..|...+..+...|++++|.++|+.-.+.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37777777777754443 345667777777888888888888887777666644
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.84 E-value=94 Score=30.33 Aligned_cols=26 Identities=4% Similarity=-0.057 Sum_probs=16.2
Q ss_pred ccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 408 DSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
.....+...|.+.|+.++..+++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666666666666666666654
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.68 E-value=75 Score=28.03 Aligned_cols=17 Identities=0% Similarity=0.022 Sum_probs=7.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q 004813 214 ETNRIESALDQFRRMHK 230 (729)
Q Consensus 214 ~~~~~~~A~~~~~~m~~ 230 (729)
..|+.+....+++.+.+
T Consensus 18 ~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 33444444444443333
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.32 E-value=1.2e+02 Score=29.73 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=21.3
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 377 NALLECCCNAGKFFLAKCILEKMAD 401 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~ 401 (729)
..|...|.+.|+.++..+++.....
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999887643
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=62.20 E-value=1.1e+02 Score=29.02 Aligned_cols=182 Identities=8% Similarity=-0.017 Sum_probs=104.4
Q ss_pred HHHHhcCCh---hHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCC
Q 004813 381 ECCCNAGKF---FLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCN 457 (729)
Q Consensus 381 ~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 457 (729)
..-...|++ =+|.+.++.+ ..-|.+++++++|++++..-. ..+.+.|+
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~RTi--------------~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q 70 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETRLV--------------AARYSKQGNWAAAVDILASVS---------------QTLLRSGQ 70 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTC
T ss_pred HHHHhCCCCccccHHHHHHHHH--------------HHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCC
Confidence 345567887 6777666554 444888999999999876532 12334455
Q ss_pred HHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcC
Q 004813 458 YEDALRV----FRQVSAQSLVLDSISYSKLVEGLCQVEKIT-EAVEVFCCMSK----NG--CSLSSSSFNILIYGLCVMR 526 (729)
Q Consensus 458 ~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~ 526 (729)
...|.++ .+-..+.++++|......++..+.....-+ .=..+++++.+ .| -.-++.....+...|.+.+
T Consensus 71 ~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~ 150 (336)
T 3lpz_A 71 GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG 150 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC
Confidence 4444333 344455677778777777777776544311 11233333322 12 2236778888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
++.+|...|- .|-.++...+..++..+...+...++ +...-..+ --|...++...|..+++
T Consensus 151 ~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV-L~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 151 EFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV-LPYLLVANVRAANTAYR 211 (336)
T ss_dssp CHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH-HHHHHhCCHHHHHHHHH
Confidence 9999887752 23233445665555444433322111 22222222 24556678888888776
Q ss_pred HHHH
Q 004813 607 VMVK 610 (729)
Q Consensus 607 ~~~~ 610 (729)
...+
T Consensus 212 ~f~~ 215 (336)
T 3lpz_A 212 IFTS 215 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.68 E-value=42 Score=27.83 Aligned_cols=52 Identities=8% Similarity=-0.096 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 636 VSSGINKLVSDSEVLDS-SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+.++|..|...|+-... ..|...+..+...|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 55666666666444333 34556666666777777777777777666666654
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.97 E-value=81 Score=27.21 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=12.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 305 PDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 305 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
++..+-...+.++.+.+. .++...+.++.+
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 344444444444444443 334444444443
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.55 E-value=34 Score=32.03 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMH 229 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~ 229 (729)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888888888888888764
No 279
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.56 E-value=1.4e+02 Score=27.95 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=102.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHH
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYED 460 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 460 (729)
+.-...|++=+|.+.++.+ ..-|.+++++++|++++..-. ..+.+.|+...
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl--------------~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~s 71 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTI--------------ANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGS 71 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHH
T ss_pred HHHhhccChHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcch
Confidence 3445567777777766554 444778888999988876542 22344455544
Q ss_pred HHH----HHHHHHhCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHH
Q 004813 461 ALR----VFRQVSAQSLVLDSISYSKLVEGLCQVEKIT-EAVEVFCCMS----KNG--CSLSSSSFNILIYGLCVMRKVD 529 (729)
Q Consensus 461 a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~ 529 (729)
|.+ +.+-..+.+.+++......++..+.....-+ .=.++++++. +.| -.-++..+..+...|.+.|++.
T Consensus 72 a~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~ 151 (312)
T 2wpv_A 72 GTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVY 151 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHH
Confidence 444 3444556677888888888877776533111 1133334443 222 1236778888889999999998
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL---QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
+|...|-. +-.-+...+..++.-+... |...++ +...-.. +--|...|+...|..+++
T Consensus 152 ~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 152 EAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHH
Confidence 88776531 1111334444444433332 322221 1111112 223456788888888888
Q ss_pred HHH
Q 004813 607 VMV 609 (729)
Q Consensus 607 ~~~ 609 (729)
...
T Consensus 213 ~f~ 215 (312)
T 2wpv_A 213 IFL 215 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.26 E-value=45 Score=33.76 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-cccH--HhHHHHH-HHHHhcCCChhHHHHHHHHHHHC
Q 004813 130 VREALISLVFSFVNHYRVNGAMRVLVNMNSGGF-KLSV--DVFNVVL-GAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
...+++.+++.|...+.++.|..+..+..-... .++. ..|...+ +...-. +++.+|.+.|......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence 356788899999999999999999998842111 1111 2233222 334444 8899999888887754
No 281
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.71 E-value=68 Score=23.79 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=5.8
Q ss_pred hHHHHHHHHHhhh
Q 004813 76 LSSALKIFKWVSI 88 (729)
Q Consensus 76 ~~~A~~~~~~~~~ 88 (729)
.++|.-+-+|+..
T Consensus 22 HqEA~tIAdwL~~ 34 (115)
T 2uwj_G 22 HEEALCIAEWLER 34 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.56 E-value=53 Score=28.94 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 004813 415 RWLCENEEIRKAYELLGR 432 (729)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~ 432 (729)
....+.|+.+-+.-+++.
T Consensus 215 ~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 333445555544444443
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.80 E-value=71 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=5.9
Q ss_pred hHHHHHHHHHhhh
Q 004813 76 LSSALKIFKWVSI 88 (729)
Q Consensus 76 ~~~A~~~~~~~~~ 88 (729)
.++|.-+-+|+..
T Consensus 23 HqEA~tIAdwL~~ 35 (116)
T 2p58_C 23 HEEANCIAEWLHL 35 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.81 E-value=1.2e+02 Score=25.79 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=24.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
++..+-...+.++.+.++.+ +...+..+... ++..+-...+.++...|. .++...+..+..
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 34444444444444444322 22233333221 344444444444444443 334444444443
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.31 E-value=1.2e+02 Score=25.64 Aligned_cols=14 Identities=0% Similarity=0.076 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCCCC
Q 004813 427 YELLGRMVVSSVVP 440 (729)
Q Consensus 427 ~~~~~~~~~~~~~p 440 (729)
.++++.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444555443
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.09 E-value=40 Score=30.44 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=15.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC
Q 004813 246 GLIANSRVDDSVSILGEMFDLGIQLE 271 (729)
Q Consensus 246 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 271 (729)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34456666666666666665554444
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.62 E-value=1.4e+02 Score=27.42 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=5.3
Q ss_pred hhcCCHHHHHHHH
Q 004813 453 CKLCNYEDALRVF 465 (729)
Q Consensus 453 ~~~~~~~~a~~~~ 465 (729)
+..|+.+-+.-++
T Consensus 169 ~~~g~~~~v~~Ll 181 (285)
T 3kea_A 169 IKNGHVDMMILLL 181 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcChHHHHHHHH
Confidence 3444444433333
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.91 E-value=1.3e+02 Score=25.80 Aligned_cols=57 Identities=7% Similarity=0.036 Sum_probs=37.3
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004813 560 LQRAKDLLVVLAQMLVEGCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD 616 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 616 (729)
.+...++..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 334567777777777765443 344556666666777777777777777777766663
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.42 E-value=1.5e+02 Score=26.03 Aligned_cols=20 Identities=5% Similarity=0.111 Sum_probs=8.8
Q ss_pred HhcCChhHHHHHHHHHHHCC
Q 004813 248 IANSRVDDSVSILGEMFDLG 267 (729)
Q Consensus 248 ~~~g~~~~a~~~~~~~~~~~ 267 (729)
+..|+.+.+..+++.+.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 33444444444444444333
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.43 E-value=2e+02 Score=27.48 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=18.2
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMA 400 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~ 400 (729)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 777777888888888877777653
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.36 E-value=71 Score=28.49 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
++.+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666666666665543
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.38 E-value=59 Score=28.56 Aligned_cols=54 Identities=15% Similarity=-0.047 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 634 HLVSSGINKLVSDSEVLD-SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+.+..+|..|...|+-.. ...|...+..+...|++++|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466677777777754443 335667777777778888888888777776666644
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.05 E-value=95 Score=27.67 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 209 LEVLFETNRIESALDQFRRMHKK--GCCP----NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 209 i~~~~~~~~~~~A~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
++.+....++++|.+++++..+. +.++ +.......++.-.....-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45566667777777777665441 1221 111112222222222222233333333322 23344444555666
Q ss_pred HhcCCHHHHHHHHHHH
Q 004813 283 CRENKLEEAIRLFKMM 298 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m 298 (729)
.+.|+-++|.++|=+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 6666666666666433
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.82 E-value=1e+02 Score=24.33 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcC--CHHHHHHHHHHHHHCCCC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENE--EIRKAYELLGRMVVSSVV 439 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 439 (729)
..++.-|...|+.++|.+.++++.............+..++-+.+ ..+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 567777777888888888888775321112222233333444332 134555666666555433
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.73 E-value=2.5e+02 Score=27.63 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=5.0
Q ss_pred HhcCChhHHHHH
Q 004813 248 IANSRVDDSVSI 259 (729)
Q Consensus 248 ~~~g~~~~a~~~ 259 (729)
+..|+.+.+..+
T Consensus 121 ~~~g~~~~v~~L 132 (437)
T 1n11_A 121 AREGHVETVLAL 132 (437)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 344444443333
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.35 E-value=3e+02 Score=27.93 Aligned_cols=65 Identities=8% Similarity=-0.034 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERY-PNVR---EALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
...++.+++.|...+.+++|..+..+..--.. .++. .-+..++..+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56789999999999999999999998741110 1121 22344677888899999999999988654
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.06 E-value=41 Score=27.89 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCC--CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004813 391 LAKCILEKMADRKIA--DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC 442 (729)
Q Consensus 391 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 442 (729)
.+.++|..|..+++. -...|......+-..|++.+|.++|..-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 355666666666665 3444555566666666666666666666666555543
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.35 E-value=2.8e+02 Score=27.24 Aligned_cols=17 Identities=12% Similarity=-0.125 Sum_probs=8.7
Q ss_pred HHHHhcCChhhHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLV 155 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~ 155 (729)
...+..|+.+-+..+++
T Consensus 52 ~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 52 HMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33445566555554444
No 299
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=39.28 E-value=1.2e+02 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=14.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC
Q 004813 246 GLIANSRVDDSVSILGEMFDLGI 268 (729)
Q Consensus 246 ~~~~~g~~~~a~~~~~~~~~~~~ 268 (729)
..++.|+.+.+..+++...+.+.
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~~ 41 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSKK 41 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSCC
T ss_pred HHHHcCCHHHHHHHHHHHhhccc
Confidence 34456777777777766665543
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.15 E-value=1.8e+02 Score=24.83 Aligned_cols=79 Identities=9% Similarity=-0.158 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIP 280 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 280 (729)
+...-...+.++.+.++.+ +...+..+.+ .++...-...+.++.+.|+.+ +...+..+.+ .++..+-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444444444422 2333333332 234444445555555555433 2222333332 244455555555
Q ss_pred HHHhcCC
Q 004813 281 MLCRENK 287 (729)
Q Consensus 281 ~~~~~g~ 287 (729)
++.+.+.
T Consensus 166 aL~~~~~ 172 (211)
T 3ltm_A 166 ALGEIGG 172 (211)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 5555554
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.52 E-value=1.4e+02 Score=23.42 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~ 573 (729)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444455555555555544
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.38 E-value=88 Score=25.90 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 004813 77 SSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE--RYPNVREALISLVFSFVNHY 145 (729)
Q Consensus 77 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 145 (729)
+.+++-+....+..|.+.++. -..++..+...+.+-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344444444444444444432 233444555555555566666655554 43444444444445555544
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.97 E-value=2.8e+02 Score=26.32 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.3
Q ss_pred HhcCCHHHHHHHHHH
Q 004813 283 CRENKLEEAIRLFKM 297 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~ 297 (729)
+..|+.+-+..+++.
T Consensus 92 ~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 92 VMANKTDLVVALVEG 106 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHh
Confidence 334444444444433
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.04 E-value=1.8e+02 Score=23.92 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=29.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHhcCChhhHHHHHHHHH
Q 004813 108 LAGNVEEMEGLCQNMVKERYPN--VREALISLVF------SFVNHYRVNGAMRVLVNMN 158 (729)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~ 158 (729)
..|+|-+|-++++..-.....+ ....+..||+ ...+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3477777777777665554344 4455555555 2234566666766666663
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.55 E-value=99 Score=25.26 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=33.8
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEE--IRKAYELLGRMVVSSVV 439 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 439 (729)
..++.-|...|+.++|.+.++++.............+..++-+.++ .+.+..++..+...++-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 6677777778888888888887743211122222333334433221 34455566666555433
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.84 E-value=99 Score=26.19 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004813 281 MLCRENKLEEAIRLFKMM-RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPT 341 (729)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 341 (729)
..++.|+.+-+..+++.- .... ..|..-++.+..+.........-.++.+.+.+.|..++
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 344566665544444332 1111 12222333343333322223333455666666665544
No 307
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.01 E-value=3e+02 Score=25.74 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 004813 277 CIIPMLCRENKLEEAIRLF 295 (729)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~ 295 (729)
+.+...++.|+++-+..++
T Consensus 27 t~L~~Av~~g~~~~V~~LL 45 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLL 45 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3444455667766555444
No 308
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.98 E-value=2.1e+02 Score=24.11 Aligned_cols=91 Identities=8% Similarity=-0.149 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004813 200 PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCII 279 (729)
Q Consensus 200 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 279 (729)
++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.++.+ +...+..+.+ .++..+-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444445555555555432 3333333332 245555555555555555533 2333333332 24555555556
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004813 280 PMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~ 299 (729)
.++.+.|.. ++...+..+.
T Consensus 160 ~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 160 DALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHHhCch-hHHHHHHHHH
Confidence 666665553 3333443333
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.90 E-value=3.1e+02 Score=25.59 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHh
Q 004813 275 YTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR--LDDANDILEDMIVIGLTPTDDV 344 (729)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 344 (729)
...++.-|...|+.++|.+.++++..-.. -...++..+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45678888888999999999988864111 012334444444444333 4556778888877776544443
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.93 E-value=1.2e+02 Score=24.68 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~ 573 (729)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3445555555555555555554
No 311
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.57 E-value=2.6e+02 Score=24.28 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=6.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 004813 454 KLCNYEDALRVFRQVS 469 (729)
Q Consensus 454 ~~~~~~~a~~~~~~~~ 469 (729)
..|+...+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444444433
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.56 E-value=57 Score=28.62 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhCCCC--CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 390 FLAKCILEKMADRKIA--DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVP 440 (729)
Q Consensus 390 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 440 (729)
+.+..+|..|...++. -...|......+-..|++.+|.++|..-++++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666777777777766 44556666677777777777777777777666565
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.30 E-value=2.5e+02 Score=24.07 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=16.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 595 QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
-.+.+.|+-++-+|++.| .|....-..++-+...
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 345555555555555555 4443333334434333
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.17 E-value=2.7e+02 Score=24.06 Aligned_cols=14 Identities=7% Similarity=-0.341 Sum_probs=6.0
Q ss_pred hhcCCHHHHHHHHH
Q 004813 453 CKLCNYEDALRVFR 466 (729)
Q Consensus 453 ~~~~~~~~a~~~~~ 466 (729)
.+.|+.+-+.-+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44444444443333
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.58 E-value=1.1e+02 Score=29.24 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMH 229 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~ 229 (729)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888777764
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.35 E-value=1.9e+02 Score=23.26 Aligned_cols=41 Identities=2% Similarity=-0.181 Sum_probs=19.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHY 145 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 145 (729)
..+...+ .-.|.++++.+.+.+...+..+...-+..+...|
T Consensus 26 ~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 26 EAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3333333 4455555555555444444444444444444444
No 317
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.31 E-value=5.5e+02 Score=27.09 Aligned_cols=20 Identities=10% Similarity=-0.167 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004813 413 PIRWLCENEEIRKAYELLGR 432 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~ 432 (729)
....+.-.|+++.|++.+-.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~ 319 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYT 319 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 44444555666666665543
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.69 E-value=4.3e+02 Score=29.51 Aligned_cols=48 Identities=8% Similarity=-0.014 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 004813 168 VFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNV----DTLNYLLEVLFETN 216 (729)
Q Consensus 168 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~ 216 (729)
-|..++..+-+. +.++-+.+.-+...+.--+-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~-~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 577788888887 8888888887777754222232 35667777666544
No 319
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.47 E-value=3.1e+02 Score=24.16 Aligned_cols=26 Identities=8% Similarity=-0.010 Sum_probs=14.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC
Q 004813 245 KGLIANSRVDDSVSILGEMFDLGIQL 270 (729)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 270 (729)
...+..|+.+.+..+++.+.+.|..+
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 33445566666666666555555433
No 320
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=27.47 E-value=2.1e+02 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=6.9
Q ss_pred HHhHHHHHHHHHhcCCh
Q 004813 652 SSMYNILINGLWKEGLT 668 (729)
Q Consensus 652 ~~~~~~l~~~~~~~g~~ 668 (729)
+.++...++.+.+.|-.
T Consensus 53 ~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 53 ARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp CSSHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 33344444444444433
No 321
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.14 E-value=5.8e+02 Score=26.93 Aligned_cols=83 Identities=10% Similarity=0.005 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR-- 284 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 284 (729)
.....+.-.|+++.|++++-.. ...+.+.+...+.. .|-+.. -+.+..........-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~----~~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKI----DSSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccC----CCcccccCCCcccccHHHHHHHHHHHh
Confidence 3455666789999999987644 23455555444443 333322 1111111000112336778888875
Q ss_pred -cCCHHHHHHHHHHHHh
Q 004813 285 -ENKLEEAIRLFKMMRA 300 (729)
Q Consensus 285 -~g~~~~A~~~~~~m~~ 300 (729)
..+..+|.++|--+..
T Consensus 368 ~~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITL 384 (661)
T ss_dssp TTTCHHHHHHHHHGGGG
T ss_pred hcCCHHHHHHHHHHHhc
Confidence 5788999998877743
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.12 E-value=1.3e+02 Score=24.24 Aligned_cols=35 Identities=3% Similarity=-0.008 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE 491 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 491 (729)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444445555444443334444333344444433
No 323
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.93 E-value=4e+02 Score=24.97 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHhhhhhcchhhhhhhcc
Q 004813 634 HLVSSGINKLVSDSEVLDS--SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA-TTHGLLVGSSVGEEIDSRRFAFD 710 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~ 710 (729)
....++.--+...+..|.- -++...+....+.+++..|..+-+++++.+-.|+. .-..-++..|-+.+..+--..|+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da~eidyD 266 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFD 266 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCSSCCSCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCccccCCC
Confidence 3444444444443333322 25667788889999999999999999987643332 23566777777666555444554
Q ss_pred c
Q 004813 711 S 711 (729)
Q Consensus 711 ~ 711 (729)
.
T Consensus 267 ~ 267 (325)
T 3mv2_A 267 P 267 (325)
T ss_dssp T
T ss_pred C
Confidence 3
No 324
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.89 E-value=2.8e+02 Score=23.22 Aligned_cols=63 Identities=8% Similarity=-0.072 Sum_probs=27.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC----CcccchHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIA----DCDSWNIPIRWLCE-NEEIRKAYELLGRMVVSSVVPD 441 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~ 441 (729)
.+...+..|+.+.-.++.+-+.+.|.. +..-++.|..+... ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 333444445444444445555555443 22223333332222 1223334455555666665444
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.84 E-value=3.1e+02 Score=23.63 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=7.1
Q ss_pred HHhcCChhHHHHHHH
Q 004813 247 LIANSRVDDSVSILG 261 (729)
Q Consensus 247 ~~~~g~~~~a~~~~~ 261 (729)
.+..|+++....++.
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344455555444444
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.74 E-value=4.8e+02 Score=25.88 Aligned_cols=157 Identities=10% Similarity=-0.006 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHhHHHHHHHHHh
Q 004813 492 KITEAVEVFCCMSKN--------GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-S---YTTSTYTKIMLGLVK 559 (729)
Q Consensus 492 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~ 559 (729)
..++...+++..... ++..+......++.. ..|+..++..+++.+..... . ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 456667777777653 233466666666655 46888888888888765431 0 012222222221111
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 004813 560 LQ-RAKDLLVVLAQMLVEGCALDVEAYCILIQSM---SEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQ--- 632 (729)
Q Consensus 560 ~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 632 (729)
.. .++ +-....| .++.++ .+.++.+.|+.++.+|++.|..|....-..+..+...-|.
T Consensus 244 ~~~~~d--------------k~gd~~y-d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p 308 (447)
T 3pvs_A 244 RSARFD--------------NKGDRFY-DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADP 308 (447)
T ss_dssp CCCC-----------------CCHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCT
T ss_pred hhhccC--------------CccchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCh
Confidence 10 000 0012223 233343 3457899999999999998887776655556666655553
Q ss_pred --hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004813 633 --LHLVSSGINKLVSDSEVLDSSMYNILINGLWKE 665 (729)
Q Consensus 633 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 665 (729)
+..|...++.....|.|.-.......+-.++.+
T Consensus 309 ~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~ 343 (447)
T 3pvs_A 309 RAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACA 343 (447)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcC
Confidence 345566666666666544333344333333433
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.70 E-value=2.8e+02 Score=23.20 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHh---HHHHHHH
Q 004813 209 LEVLFETNRIESALDQFRRMHKKGCCPNSR---TFEIVIKGLIA-NSRVDDSVSILGEMFDLGIQLELSF---YTCIIPM 281 (729)
Q Consensus 209 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~ 281 (729)
+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++... .++.+..
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~ 121 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGG
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHH
Confidence 334445555555556666666666555432 12222222221 1223334555666666665544321 1122222
Q ss_pred HHhcCCH-HHHHHHHHHHHh-CCCCCC
Q 004813 282 LCRENKL-EEAIRLFKMMRA-LDLMPD 306 (729)
Q Consensus 282 ~~~~g~~-~~A~~~~~~m~~-~~~~p~ 306 (729)
.+..+.. ..-.++++.+.+ .|..++
T Consensus 122 A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 122 IFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp GGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred HHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 2222221 334455555665 554443
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.52 E-value=3.4e+02 Score=24.00 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=34.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHH--hcCChhHHHHHHHHHH
Q 004813 209 LEVLFETNRIESALDQFRRMHKKGCCPNSRT-------FEIVIKGLI--ANSRVDDSVSILGEMF 264 (729)
Q Consensus 209 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------~~~li~~~~--~~g~~~~a~~~~~~~~ 264 (729)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445577888888888887777766666433 233333332 4577766666666543
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.81 E-value=3.1e+02 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=9.9
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 004813 561 QRAKDLLVVLAQMLVEGCAL 580 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~~~~p 580 (729)
.+.+.|+-.+.+|++.|..|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555544443
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.98 E-value=2.7e+02 Score=22.31 Aligned_cols=42 Identities=5% Similarity=-0.151 Sum_probs=18.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHY 145 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 145 (729)
..+...+..-.|.++++.+.+.+...+..+....+..+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444445555555544443334444444444444443
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.61 E-value=1.2e+02 Score=24.57 Aligned_cols=34 Identities=6% Similarity=-0.048 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE 491 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 491 (729)
.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 42 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444444333333333333333343333
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.85 E-value=3.5e+02 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHhCC
Q 004813 216 NRIESALDQFRRMHKKG 232 (729)
Q Consensus 216 ~~~~~A~~~~~~m~~~~ 232 (729)
.+.+.|+-.+-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 333
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.32 E-value=5.5e+02 Score=25.42 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC
Q 004813 285 ENKLEEAIRLFKMMRALDLMPD 306 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~ 306 (729)
.++.+.|+..+.+|.+.|..|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3455555555555555554333
No 334
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.10 E-value=3.6e+02 Score=23.15 Aligned_cols=50 Identities=2% Similarity=-0.038 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVS 258 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 258 (729)
.+...++.|+++....+++.-...-..++....+. +...+..|+.+-+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~ 58 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVEF 58 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHHH
Confidence 35556677888877777765322111123333333 333445566544433
No 335
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.03 E-value=1.1e+02 Score=24.67 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004813 425 KAYELLGRMVVSSVVPDCATYSAFVLG 451 (729)
Q Consensus 425 ~a~~~~~~~~~~~~~p~~~~~~~ll~~ 451 (729)
.|.++++.+.+.+...+..|...-|..
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~ 61 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLEL 61 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHH
Confidence 344444444444333333333333333
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.88 E-value=1.3e+02 Score=23.95 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
-.|.++++.+.+.+...+..|.-.-++.+..
T Consensus 35 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3344444444444333333333333333333
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.53 E-value=3.1e+02 Score=22.13 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=38.1
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 004813 296 KMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVG 356 (729)
Q Consensus 296 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 356 (729)
+.+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 ~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 16 MSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34556666443 3344566666666677888888888888776667777755566555555
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.91 E-value=2.9e+02 Score=21.71 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHCCCCCCH
Q 004813 183 FADFVFVYKEMVKAGIVPNV 202 (729)
Q Consensus 183 ~~~a~~~~~~~~~~g~~~~~ 202 (729)
.-.|.++++.+.+.+...+.
T Consensus 34 ~~sa~ei~~~l~~~~~~is~ 53 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGL 53 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCH
T ss_pred CCCHHHHHHHHHhhCCCCCH
Confidence 34444444444444333333
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.63 E-value=1.4e+02 Score=24.31 Aligned_cols=33 Identities=3% Similarity=0.067 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE 491 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 491 (729)
-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444433333333333333343333
No 340
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.92 E-value=5.3e+02 Score=24.27 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=43.2
Q ss_pred ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 004813 164 LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVD---TLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTF 240 (729)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 240 (729)
.|..-.+.|..+. .. |+.+.+..++ +.|..++.. -++ .+...+..|+.+-+.-+ .+.|..++...-
T Consensus 16 ~d~~g~t~L~~Aa-~~-g~~~~v~~Ll----~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g 84 (364)
T 3ljn_A 16 SDDENMEKIHVAA-RK-GQTDEVRRLI----ETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYL----ASVGEVHSLWHG 84 (364)
T ss_dssp CCHHHHHHHHHHH-HH-TCHHHHHHHH----HTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHH----HHHCCCCCCBTT
T ss_pred cCCCCCCHHHHHH-Hc-CCHHHHHHHH----HcCCCccccCCCCCc-HHHHHHHcCCHHHHHHH----HHCCCCccccCC
Confidence 3444455544443 33 6665544444 344444322 222 33334455665443333 333333333222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004813 241 EIVIKGLIANSRVDDSVSILGEMFDLGIQL 270 (729)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 270 (729)
.+.+...+..|+.+-+..+++...+.|..+
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 223344455677666666666555444433
No 341
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.81 E-value=4.1e+02 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=9.6
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 004813 561 QRAKDLLVVLAQMLVEGCAL 580 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~~~~p 580 (729)
.+.+.|+-.+.+|++.|..|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34455555555555444443
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.63 E-value=4.1e+02 Score=22.83 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=7.1
Q ss_pred HHHhcCChhHHHHHHH
Q 004813 382 CCCNAGKFFLAKCILE 397 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~ 397 (729)
..+..|+.+-+..+++
T Consensus 43 ~A~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 43 IAALYDNLEAAMVLME 58 (232)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344455444444443
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.52 E-value=2.1e+02 Score=23.51 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHccC
Q 004813 289 EEAIRLFKM-MRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVI--GLTPTDDVFVDIVRGLCEVG 356 (729)
Q Consensus 289 ~~A~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~ 356 (729)
+.+++-+.+ +.+.|++.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 444444433 4455766654 3455667777777788888899888877 66667777655566655555
No 344
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.19 E-value=3.2e+02 Score=21.51 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=10.2
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 004813 279 IPMLCRENKLEEAIRLFKM 297 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~ 297 (729)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334555666666555554
Done!